Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211190 | RHN63602.1 | 99.648 | 284 | 1 | 0 | 1 | 284 | 6 | 289 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211190 | sp|Q9FM19|HIR1_ARATH | 89.007 | 282 | 31 | 0 | 1 | 282 | 1 | 282 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211190 | A0A396IDJ7 | 99.648 | 284 | 1 | 0 | 1 | 284 | 6 | 289 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1211190 | Msa1299450 | 0.890001 | 1.461205e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211190 | MtrunA17_Chr4g0060091 | 99.648 | 284 | 1 | 0 | 1 | 284 | 6 | 289 | 0.0 | 584 |
| Msa1211190 | MtrunA17_Chr4g0060171 | 89.761 | 293 | 21 | 1 | 1 | 284 | 1 | 293 | 0.0 | 537 |
| Msa1211190 | MtrunA17_Chr4g0060111 | 94.406 | 286 | 14 | 1 | 1 | 284 | 1 | 286 | 0.0 | 536 |
| Msa1211190 | MtrunA17_Chr4g0060151 | 94.406 | 286 | 14 | 1 | 1 | 284 | 1 | 286 | 0.0 | 536 |
| Msa1211190 | MtrunA17_Chr4g0060101 | 94.014 | 284 | 17 | 0 | 1 | 284 | 1 | 284 | 0.0 | 535 |
| Msa1211190 | MtrunA17_Chr6g0452801 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 1.37e-178 | 493 |
| Msa1211190 | MtrunA17_Chr8g0362631 | 80.142 | 282 | 56 | 0 | 1 | 282 | 1 | 282 | 2.00e-176 | 488 |
| Msa1211190 | MtrunA17_Chr6g0476481 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 3.23e-115 | 333 |
| Msa1211190 | MtrunA17_Chr6g0476411 | 55.102 | 49 | 22 | 0 | 234 | 282 | 1 | 49 | 6.29e-17 | 73.2 |
| Msa1211190 | MtrunA17_Chr6g0476421 | 55.932 | 59 | 25 | 1 | 148 | 205 | 1 | 59 | 4.63e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211190 | AT5G62740.1 | 89.007 | 282 | 31 | 0 | 1 | 282 | 1 | 282 | 0.0 | 529 |
| Msa1211190 | AT1G69840.1 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 3.28e-172 | 478 |
| Msa1211190 | AT1G69840.2 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 3.28e-172 | 478 |
| Msa1211190 | AT1G69840.5 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 3.28e-172 | 478 |
| Msa1211190 | AT1G69840.7 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 3.28e-172 | 478 |
| Msa1211190 | AT1G69840.4 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 3.28e-172 | 478 |
| Msa1211190 | AT1G69840.6 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 3.28e-172 | 478 |
| Msa1211190 | AT1G69840.3 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 3.28e-172 | 478 |
| Msa1211190 | AT3G01290.1 | 77.739 | 283 | 63 | 0 | 1 | 283 | 1 | 283 | 4.24e-167 | 464 |
| Msa1211190 | AT5G51570.1 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 1.97e-120 | 347 |
Find 95 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTTTGAAAGAAAT+TGG | 0.117209 | 8_1:-70706927 | Msa1211190:CDS |
| ATATACCATTTATAATTAAT+AGG | 0.219579 | 8_1:-70709466 | Msa1211190:five_prime_UTR |
| ATAGTTGATACTGTAATATT+TGG | 0.227892 | 8_1:+70706680 | None:intergenic |
| TCGCCCCTATTAATTATAAA+TGG | 0.245174 | 8_1:+70709461 | None:intergenic |
| CCATGTCACATATTCTATTA+TGG | 0.260120 | 8_1:-70706604 | Msa1211190:three_prime_UTR |
| ACATATTCTATTATGGAAAA+TGG | 0.267504 | 8_1:-70706597 | Msa1211190:three_prime_UTR |
| CTATTCTCATTGCAGTAATC+AGG | 0.273861 | 8_1:-70707775 | Msa1211190:intron |
| GGAGAAGTCCATCGCGAATT+TGG | 0.274844 | 8_1:+70706838 | None:intergenic |
| TATACCATTTATAATTAATA+GGG | 0.309618 | 8_1:-70709465 | Msa1211190:five_prime_UTR |
| GCGACATCCAAGTAGAGTTT+TGG | 0.314278 | 8_1:+70707743 | None:intergenic |
| ATGACAAAATATATCTTTGC+AGG | 0.317521 | 8_1:+70706653 | None:intergenic |
| CCATTGCATGCCATGGTTCC+TGG | 0.324425 | 8_1:-70708379 | Msa1211190:CDS |
| TTGACACTTTGAAAGAAATT+GGG | 0.334978 | 8_1:-70706926 | Msa1211190:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8_1:-70707599 | Msa1211190:intron |
| CTCCCTTCGGCTACAACAAT+TGG | 0.345628 | 8_1:-70708334 | Msa1211190:CDS |
| TAATAGGGGCGATTAATATC+AGG | 0.376790 | 8_1:-70709450 | Msa1211190:five_prime_UTR |
| TCCTATCTTTAGTTAATTTG+AGG | 0.383989 | 8_1:-70709324 | Msa1211190:intron |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.407086 | 8_1:-70708432 | Msa1211190:CDS |
| ACATTGCAGTTAAAAGCAAA+TGG | 0.407909 | 8_1:-70708493 | Msa1211190:intron |
| TTCCTGGGAAAACGGATTGC+CGG | 0.420365 | 8_1:-70708363 | Msa1211190:CDS |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8_1:-70707017 | Msa1211190:CDS |
| AATTCGCGATGGACTTCTCC+AGG | 0.436039 | 8_1:-70706835 | Msa1211190:CDS |
| TGCTAAAGATGTCATGGATA+TGG | 0.438467 | 8_1:-70706967 | Msa1211190:CDS |
| CATTGCAGTTAAAAGCAAAT+GGG | 0.439348 | 8_1:-70708492 | Msa1211190:intron |
| GCCCGCTTCACATGCTCATC+GGG | 0.440215 | 8_1:+70707539 | None:intergenic |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8_1:-70707077 | Msa1211190:CDS |
| TGCCATGGTTCCTGGGAAAA+CGG | 0.457814 | 8_1:-70708371 | Msa1211190:CDS |
| AATCAGCCGAACAGTGGAAA+AGG | 0.476372 | 8_1:+70709561 | None:intergenic |
| AGCCCGCTTCACATGCTCAT+CGG | 0.481339 | 8_1:+70707538 | None:intergenic |
| AAGAATGAGGTTGGCAGCTA+AGG | 0.482595 | 8_1:-70707150 | Msa1211190:CDS |
| GCCCGATGAGCATGTGAAGC+GGG | 0.484110 | 8_1:-70707540 | Msa1211190:CDS |
| GTTGATACTGTAATATTTGG+AGG | 0.489947 | 8_1:+70706683 | None:intergenic |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8_1:-70707950 | Msa1211190:CDS |
| CAGTGTTCCAAAACTCTACT+TGG | 0.493504 | 8_1:-70707750 | Msa1211190:CDS |
| CATGGCATGCAATGGCATCC+TGG | 0.506841 | 8_1:+70708387 | None:intergenic |
| TATCCAATTGTTGTAGCCGA+AGG | 0.512577 | 8_1:+70708331 | None:intergenic |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8_1:-70707072 | Msa1211190:CDS |
| ATCAGCTGCAAGAATGAGGT+TGG | 0.517543 | 8_1:-70707159 | Msa1211190:intron |
| CTTGGCAGACAAGGCTAATG+AGG | 0.518494 | 8_1:-70707932 | Msa1211190:CDS |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8_1:+70706896 | None:intergenic |
| CATTGCATGCCATGGTTCCT+GGG | 0.523914 | 8_1:-70708378 | Msa1211190:CDS |
| TATTCTCATTGCAGTAATCA+GGG | 0.525164 | 8_1:-70707774 | Msa1211190:intron |
| CACTTCATATCTGATTTGTA+CGG | 0.525495 | 8_1:-70706785 | Msa1211190:three_prime_UTR |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8_1:-70706882 | Msa1211190:CDS |
| TTTGAAGAAGTGCTTCAGCC+AGG | 0.529505 | 8_1:-70708405 | Msa1211190:CDS |
| ACAGTAACAAACCTTTGTCT+TGG | 0.530913 | 8_1:+70708296 | None:intergenic |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8_1:-70707038 | Msa1211190:CDS |
| ACATCTTTAGCACTTGTCCC+TGG | 0.540845 | 8_1:+70706978 | None:intergenic |
| TAGCCGAAGGGAGAGATGAC+CGG | 0.541932 | 8_1:+70708344 | None:intergenic |
| CCATAATAGAATATGTGACA+TGG | 0.543112 | 8_1:+70706604 | None:intergenic |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8_1:-70707071 | Msa1211190:CDS |
| GACAAGTGCTAAAGATGTCA+TGG | 0.545051 | 8_1:-70706973 | Msa1211190:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8_1:-70707099 | Msa1211190:CDS |
| TGACACTTTGAAAGAAATTG+GGG | 0.551717 | 8_1:-70706925 | Msa1211190:CDS |
| CTCATTAGCCTTGTCTGCCA+AGG | 0.555637 | 8_1:+70707933 | None:intergenic |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8_1:+70706864 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8_1:-70706888 | Msa1211190:CDS |
| CGTACAAATCAGATATGAAG+TGG | 0.567066 | 8_1:+70706786 | None:intergenic |
| TTGCCGGTCATCTCTCCCTT+CGG | 0.567067 | 8_1:-70708347 | Msa1211190:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8_1:-70707076 | Msa1211190:CDS |
| CAGGATGCCATTGCATGCCA+TGG | 0.571416 | 8_1:-70708386 | Msa1211190:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8_1:+70706899 | None:intergenic |
| GAAGCTACTGATGAGAACCC+TGG | 0.574524 | 8_1:+70706817 | None:intergenic |
| ATCCAATTGTTGTAGCCGAA+GGG | 0.579325 | 8_1:+70708332 | None:intergenic |
| CCAGGAACCATGGCATGCAA+TGG | 0.581813 | 8_1:+70708379 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.585634 | 8_1:-70707518 | Msa1211190:intron |
| GTTGGCAGCTAAGGAGAAAG+CGG | 0.586849 | 8_1:-70707141 | Msa1211190:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8_1:-70707941 | Msa1211190:CDS |
| ATACCATTTATAATTAATAG+GGG | 0.589545 | 8_1:-70709464 | Msa1211190:five_prime_UTR |
| TTTGATCAGCTGCAAGAATG+AGG | 0.593297 | 8_1:-70707163 | Msa1211190:intron |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8_1:+70707088 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8_1:-70707708 | Msa1211190:CDS |
| TTAATTAATCAGCCGAACAG+TGG | 0.611605 | 8_1:+70709555 | None:intergenic |
| TCTACAGTGGCTATGAGAGA+AGG | 0.612018 | 8_1:-70708438 | Msa1211190:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.621419 | 8_1:-70707690 | Msa1211190:intron |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8_1:-70707904 | Msa1211190:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8_1:+70707938 | None:intergenic |
| ATTGCAGTTAAAAGCAAATG+GGG | 0.628697 | 8_1:-70708491 | Msa1211190:intron |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8_1:-70707906 | Msa1211190:CDS |
| GGCAGCTAAGGAGAAAGCGG+AGG | 0.632411 | 8_1:-70707138 | Msa1211190:CDS |
| AGCCCGATGAGCATGTGAAG+CGG | 0.638188 | 8_1:-70707541 | Msa1211190:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8_1:-70707105 | Msa1211190:CDS |
| TCGCCAACGTCAAGCCATTG+TGG | 0.640251 | 8_1:-70707042 | Msa1211190:CDS |
| GTTGCTAGCCAAATTCGCGA+TGG | 0.641354 | 8_1:-70706846 | Msa1211190:CDS |
| CATCCACAATGGCTTGACGT+TGG | 0.649829 | 8_1:+70707039 | None:intergenic |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8_1:-70707104 | Msa1211190:CDS |
| ATTCGCGATGGACTTCTCCA+GGG | 0.652495 | 8_1:-70706834 | Msa1211190:CDS |
| CAAATCAGATATGAAGTGGG+AGG | 0.656567 | 8_1:+70706790 | None:intergenic |
| GTACAAATCAGATATGAAGT+GGG | 0.663713 | 8_1:+70706787 | None:intergenic |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8_1:+70707028 | None:intergenic |
| AAAATGTGAGACCAAGACAA+AGG | 0.665463 | 8_1:-70708307 | Msa1211190:intron |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8_1:+70706873 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8_1:-70707905 | Msa1211190:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.697140 | 8_1:+70706943 | None:intergenic |
| GCAAGTTGATCAATCTACAG+TGG | 0.699512 | 8_1:-70708451 | Msa1211190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACCATTTATAATTAAT+AGG | - | chr8_1:70706685-70706704 | Msa1211190:three_prime_UTR | 10.0% |
| !! | TATACCATTTATAATTAATA+GGG | - | chr8_1:70706686-70706705 | Msa1211190:three_prime_UTR | 10.0% |
| !! | ATACCATTTATAATTAATAG+GGG | - | chr8_1:70706687-70706706 | Msa1211190:three_prime_UTR | 15.0% |
| !! | ACGAATATTATTTATTGATA+TGG | - | chr8_1:70708496-70708515 | Msa1211190:intron | 15.0% |
| !! | GGAAATAAAATTAATTACAA+AGG | + | chr8_1:70708730-70708749 | None:intergenic | 15.0% |
| !!! | ATTAATTTTATTTCCAAAAG+AGG | - | chr8_1:70708735-70708754 | Msa1211190:intron | 15.0% |
| !!! | AAAGATATATTTTGTCATTA+AGG | - | chr8_1:70709503-70709522 | Msa1211190:five_prime_UTR | 15.0% |
| !! | TTGTATGATACAAGAAAATA+CGG | + | chr8_1:70706874-70706893 | None:intergenic | 20.0% |
| !! | TTAAAGAAACTTAAAGTCAT+AGG | + | chr8_1:70707093-70707112 | None:intergenic | 20.0% |
| !!! | TATAGGATTTCTTGTTTAAT+TGG | + | chr8_1:70707366-70707385 | None:intergenic | 20.0% |
| !! | TATGTATGTTATAGACTTAT+TGG | + | chr8_1:70707925-70707944 | None:intergenic | 20.0% |
| !! | ATAGATAAACATGTAATAAG+TGG | - | chr8_1:70708321-70708340 | Msa1211190:CDS | 20.0% |
| !! | AATACTTAATAATAAGAACC+TGG | + | chr8_1:70708842-70708861 | None:intergenic | 20.0% |
| !!! | ATAGTTGATACTGTAATATT+TGG | + | chr8_1:70709474-70709493 | None:intergenic | 20.0% |
| !! | ACATATTCTATTATGGAAAA+TGG | - | chr8_1:70709554-70709573 | Msa1211190:five_prime_UTR | 20.0% |
| !!! | TAATTGTTTTGTATCTTTGT+GGG | - | chr8_1:70709599-70709618 | Msa1211190:five_prime_UTR | 20.0% |
| !! | TCCTATCTTTAGTTAATTTG+AGG | - | chr8_1:70706827-70706846 | Msa1211190:CDS | 25.0% |
| ! | ACCTCAAATTAACTAAAGAT+AGG | + | chr8_1:70706831-70706850 | None:intergenic | 25.0% |
| ! | CTTCTGTCTATATATATATG+TGG | - | chr8_1:70707524-70707543 | Msa1211190:CDS | 25.0% |
| !! | ATATGTGGCTTGTATATAAA+TGG | - | chr8_1:70707539-70707558 | Msa1211190:CDS | 25.0% |
| ! | CCATAGTTAAGAAAACATAT+AGG | + | chr8_1:70708017-70708036 | None:intergenic | 25.0% |
| !! | CCTATATGTTTTCTTAACTA+TGG | - | chr8_1:70708014-70708033 | Msa1211190:intron | 25.0% |
| ! | ATGGTTATCTATTTCGTTAT+TGG | - | chr8_1:70708033-70708052 | Msa1211190:intron | 25.0% |
| ! | TTTACTATTTATTTGCTTGC+AGG | - | chr8_1:70708153-70708172 | Msa1211190:intron | 25.0% |
| ! | CAAAAACATAAGCTTGAATT+TGG | + | chr8_1:70708273-70708292 | None:intergenic | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8_1:70708274-70708293 | Msa1211190:intron | 25.0% |
| ! | TTTATTGATATGGTGAATTG+TGG | - | chr8_1:70708506-70708525 | Msa1211190:intron | 25.0% |
| ! | TAACTTTGAATAATCTCAAC+AGG | - | chr8_1:70708536-70708555 | Msa1211190:intron | 25.0% |
| ! | CATATAAAAACAATGTTGTG+AGG | + | chr8_1:70708684-70708703 | None:intergenic | 25.0% |
| !! | ATTGCCATATTTTCTTATAC+TGG | - | chr8_1:70708957-70708976 | Msa1211190:intron | 25.0% |
| ! | GAAACCAGTATAAGAAAATA+TGG | + | chr8_1:70708964-70708983 | None:intergenic | 25.0% |
| !! | TTTGACACTTTGAAAGAAAT+TGG | - | chr8_1:70709224-70709243 | Msa1211190:intron | 25.0% |
| !! | TTGACACTTTGAAAGAAATT+GGG | - | chr8_1:70709225-70709244 | Msa1211190:intron | 25.0% |
| ! | ATGACAAAATATATCTTTGC+AGG | + | chr8_1:70709501-70709520 | None:intergenic | 25.0% |
| !!! | ACATGGTTTTAAATTGTTGA+AGG | + | chr8_1:70709533-70709552 | None:intergenic | 25.0% |
| ! | GTGACACAAAAATACTAATT+TGG | - | chr8_1:70709576-70709595 | Msa1211190:five_prime_UTR | 25.0% |
| !!! | GTAATTGTTTTGTATCTTTG+TGG | - | chr8_1:70709598-70709617 | Msa1211190:five_prime_UTR | 25.0% |
| ! | AATATTCCTTTTCCACTGTT+CGG | - | chr8_1:70706584-70706603 | Msa1211190:three_prime_UTR | 30.0% |
| TCGCCCCTATTAATTATAAA+TGG | + | chr8_1:70706693-70706712 | None:intergenic | 30.0% | |
| TGTCGATCATTATTTATAGC+TGG | - | chr8_1:70706905-70706924 | Msa1211190:CDS | 30.0% | |
| !!! | TTATAGCTGGTTTGTTTTCA+TGG | - | chr8_1:70706918-70706937 | Msa1211190:CDS | 30.0% |
| ! | TACAAACTGTATCTTTAGGA+AGG | + | chr8_1:70706966-70706985 | None:intergenic | 30.0% |
| AAGCTACAAACTGTATCTTT+AGG | + | chr8_1:70706970-70706989 | None:intergenic | 30.0% | |
| TCCTTACATATCTTATACCA+CGG | + | chr8_1:70707001-70707020 | None:intergenic | 30.0% | |
| AAGAAAACACTTGCAAATAG+CGG | + | chr8_1:70707200-70707219 | None:intergenic | 30.0% | |
| ATTCATGCATAAGAACTAAG+AGG | + | chr8_1:70707340-70707359 | None:intergenic | 30.0% | |
| AACAAGAAATCCTATAGTAG+AGG | - | chr8_1:70707370-70707389 | Msa1211190:intron | 30.0% | |
| AAATTTGATCTCTCTTGTTG+AGG | - | chr8_1:70707417-70707436 | Msa1211190:intron | 30.0% | |
| CACTCTAGTAGTAAAACAAA+CGG | + | chr8_1:70707475-70707494 | None:intergenic | 30.0% | |
| TATATAGACAGAAGTCTTGA+TGG | + | chr8_1:70707518-70707537 | None:intergenic | 30.0% | |
| ACATTGCAGTTAAAAGCAAA+TGG | - | chr8_1:70707658-70707677 | Msa1211190:intron | 30.0% | |
| CATTGCAGTTAAAAGCAAAT+GGG | - | chr8_1:70707659-70707678 | Msa1211190:intron | 30.0% | |
| ATTGCAGTTAAAAGCAAATG+GGG | - | chr8_1:70707660-70707679 | Msa1211190:intron | 30.0% | |
| TATAGACTTATTGGTATGCA+TGG | + | chr8_1:70707916-70707935 | None:intergenic | 30.0% | |
| ! | TAACATACATACCTTCGTTT+TGG | - | chr8_1:70707934-70707953 | Msa1211190:CDS | 30.0% |
| AATCAAAATAACATAGCTCC+TGG | + | chr8_1:70707994-70708013 | None:intergenic | 30.0% | |
| TCTATTTCGTTATTGGTATC+AGG | - | chr8_1:70708040-70708059 | Msa1211190:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8_1:70708245-70708264 | Msa1211190:intron | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | - | chr8_1:70708246-70708265 | Msa1211190:intron | 30.0% | |
| ATGTTTATCTATTGCTAAGC+AGG | + | chr8_1:70708313-70708332 | None:intergenic | 30.0% | |
| TATTCTCATTGCAGTAATCA+GGG | - | chr8_1:70708377-70708396 | Msa1211190:CDS | 30.0% | |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8_1:70708443-70708462 | Msa1211190:CDS | 30.0% | |
| ! | AAACACTTATTGACCTCTTT+TGG | + | chr8_1:70708751-70708770 | None:intergenic | 30.0% |
| GAAACATCGTAAATGATACA+AGG | + | chr8_1:70708896-70708915 | None:intergenic | 30.0% | |
| ATAAGAAAATATGGCAATCC+AGG | + | chr8_1:70708955-70708974 | None:intergenic | 30.0% | |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8_1:70709156-70709175 | Msa1211190:intron | 30.0% |
| ! | TGACACTTTGAAAGAAATTG+GGG | - | chr8_1:70709226-70709245 | Msa1211190:intron | 30.0% |
| GTACAAATCAGATATGAAGT+GGG | + | chr8_1:70709367-70709386 | None:intergenic | 30.0% | |
| ! | CACTTCATATCTGATTTGTA+CGG | - | chr8_1:70709366-70709385 | Msa1211190:intron | 30.0% |
| GTTGATACTGTAATATTTGG+AGG | + | chr8_1:70709471-70709490 | None:intergenic | 30.0% | |
| CCATAATAGAATATGTGACA+TGG | + | chr8_1:70709550-70709569 | None:intergenic | 30.0% | |
| CCATGTCACATATTCTATTA+TGG | - | chr8_1:70709547-70709566 | Msa1211190:five_prime_UTR | 30.0% | |
| TTAATTAATCAGCCGAACAG+TGG | + | chr8_1:70706599-70706618 | None:intergenic | 35.0% | |
| TAATAGGGGCGATTAATATC+AGG | - | chr8_1:70706701-70706720 | Msa1211190:three_prime_UTR | 35.0% | |
| TTTGCAAATCAAAGCTGACT+TGG | + | chr8_1:70706807-70706826 | None:intergenic | 35.0% | |
| ACCGTGGTATAAGATATGTA+AGG | - | chr8_1:70706997-70707016 | Msa1211190:CDS | 35.0% | |
| ATCCTATAGTAGAGGTAACT+AGG | - | chr8_1:70707378-70707397 | Msa1211190:intron | 35.0% | |
| TCCTATAGTAGAGGTAACTA+GGG | - | chr8_1:70707379-70707398 | Msa1211190:intron | 35.0% | |
| ! | GTGGCTTGTATATAAATGGT+CGG | - | chr8_1:70707543-70707562 | Msa1211190:CDS | 35.0% |
| AAAATGTGAGACCAAGACAA+AGG | - | chr8_1:70707844-70707863 | Msa1211190:intron | 35.0% | |
| ACAGTAACAAACCTTTGTCT+TGG | + | chr8_1:70707858-70707877 | None:intergenic | 35.0% | |
| TAAAATCCTAGCCAAAACGA+AGG | + | chr8_1:70707948-70707967 | None:intergenic | 35.0% | |
| ATTTATATTAGGCGTCATCC+AGG | - | chr8_1:70707973-70707992 | Msa1211190:CDS | 35.0% | |
| TCGATTGAATTCATGCTGAT+TGG | - | chr8_1:70708129-70708148 | Msa1211190:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | - | chr8_1:70708247-70708266 | Msa1211190:intron | 35.0% | |
| TCTATTGCTAAGCAGGTTTA+TGG | + | chr8_1:70708306-70708325 | None:intergenic | 35.0% | |
| CTATTCTCATTGCAGTAATC+AGG | - | chr8_1:70708376-70708395 | Msa1211190:CDS | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8_1:70708633-70708652 | Msa1211190:intron | 35.0% | |
| ! | AAAACCTACCTTTTTCCTCT+TGG | - | chr8_1:70708771-70708790 | Msa1211190:intron | 35.0% |
| ATGATGTACCAAGAGGAAAA+AGG | + | chr8_1:70708782-70708801 | None:intergenic | 35.0% | |
| CCAGGAACAAAGTAGATATT+TGG | + | chr8_1:70708937-70708956 | None:intergenic | 35.0% | |
| CCAAATATCTACTTTGTTCC+TGG | - | chr8_1:70708934-70708953 | Msa1211190:intron | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8_1:70709075-70709094 | Msa1211190:intron | 35.0% | |
| !! | TCTAAATATCTCTCTGGGAT+GGG | - | chr8_1:70709080-70709099 | Msa1211190:intron | 35.0% |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8_1:70709155-70709174 | Msa1211190:intron | 35.0% |
| TGCTAAAGATGTCATGGATA+TGG | - | chr8_1:70709184-70709203 | Msa1211190:intron | 35.0% | |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8_1:70709211-70709230 | None:intergenic | 35.0% |
| CGTACAAATCAGATATGAAG+TGG | + | chr8_1:70709368-70709387 | None:intergenic | 35.0% | |
| ! | TGTATCTTTAGGAAGGACGT+TGG | + | chr8_1:70706959-70706978 | None:intergenic | 40.0% |
| TTGTAGCTTCACTAAAACCG+TGG | - | chr8_1:70706981-70707000 | Msa1211190:CDS | 40.0% | |
| AGAGTTGGAGAGTTGAAGTA+CGG | + | chr8_1:70707269-70707288 | None:intergenic | 40.0% | |
| TTCAACTCTCCAACTCTATC+CGG | - | chr8_1:70707272-70707291 | Msa1211190:intron | 40.0% | |
| ACCCTAGTTACCTCTACTAT+AGG | + | chr8_1:70707383-70707402 | None:intergenic | 40.0% | |
| GAGGTAACTAGGGTTTGTAT+TGG | - | chr8_1:70707389-70707408 | Msa1211190:intron | 40.0% | |
| TGATGGAAACCTCCAATTCT+CGG | + | chr8_1:70707501-70707520 | None:intergenic | 40.0% | |
| ! | TCCTGTATCTTGTTGAGTTG+AGG | - | chr8_1:70707615-70707634 | Msa1211190:intron | 40.0% |
| TCCTCAACTCAACAAGATAC+AGG | + | chr8_1:70707619-70707638 | None:intergenic | 40.0% | |
| !! | GCAAGTTGATCAATCTACAG+TGG | - | chr8_1:70707700-70707719 | Msa1211190:CDS | 40.0% |
| ATCCAATTGTTGTAGCCGAA+GGG | + | chr8_1:70707822-70707841 | None:intergenic | 40.0% | |
| TATCCAATTGTTGTAGCCGA+AGG | + | chr8_1:70707823-70707842 | None:intergenic | 40.0% | |
| CATGGAATGACATGATGGTT+TGG | + | chr8_1:70707898-70707917 | None:intergenic | 40.0% | |
| GTATGCATGGAATGACATGA+TGG | + | chr8_1:70707903-70707922 | None:intergenic | 40.0% | |
| !!! | TACATACCTTCGTTTTGGCT+AGG | - | chr8_1:70707939-70707958 | Msa1211190:CDS | 40.0% |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8_1:70708201-70708220 | Msa1211190:intron | 40.0% | |
| !!! | CAAGTAGAGTTTTGGAACAC+TGG | + | chr8_1:70708403-70708422 | None:intergenic | 40.0% |
| CAGTGTTCCAAAACTCTACT+TGG | - | chr8_1:70708401-70708420 | Msa1211190:CDS | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8_1:70708461-70708480 | Msa1211190:CDS | 40.0% | |
| AATGTTGTGAGGACATCTCA+CGG | + | chr8_1:70708673-70708692 | None:intergenic | 40.0% | |
| TGTACCAAGAGGAAAAAGGT+AGG | + | chr8_1:70708778-70708797 | None:intergenic | 40.0% | |
| TGCATGTATGATGTACCAAG+AGG | + | chr8_1:70708789-70708808 | None:intergenic | 40.0% | |
| CTTGGTACATCATACATGCA+TGG | - | chr8_1:70708789-70708808 | Msa1211190:intron | 40.0% | |
| ACATGCATGGACAACTATGA+AGG | - | chr8_1:70708802-70708821 | Msa1211190:intron | 40.0% | |
| CATGCATGGACAACTATGAA+GGG | - | chr8_1:70708803-70708822 | Msa1211190:intron | 40.0% | |
| AAGGGATACGTGTAATATCC+AGG | - | chr8_1:70708821-70708840 | Msa1211190:intron | 40.0% | |
| TTTGATCAGCTGCAAGAATG+AGG | - | chr8_1:70708988-70709007 | Msa1211190:intron | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8_1:70709074-70709093 | Msa1211190:intron | 40.0% | |
| ! | GTCTAAATATCTCTCTGGGA+TGG | - | chr8_1:70709079-70709098 | Msa1211190:intron | 40.0% |
| GACAAGTGCTAAAGATGTCA+TGG | - | chr8_1:70709178-70709197 | Msa1211190:intron | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8_1:70709258-70709277 | None:intergenic | 40.0% | |
| CAAATCAGATATGAAGTGGG+AGG | + | chr8_1:70709364-70709383 | None:intergenic | 40.0% | |
| AATCAGCCGAACAGTGGAAA+AGG | + | chr8_1:70706593-70706612 | None:intergenic | 45.0% | |
| GAGTTGGAGAGTTGAAGTAC+GGG | + | chr8_1:70707268-70707287 | None:intergenic | 45.0% | |
| TCAACTCTCCAACTCTATCC+GGG | - | chr8_1:70707273-70707292 | Msa1211190:intron | 45.0% | |
| AGAGAATGTGTGATGCAACC+CGG | + | chr8_1:70707294-70707313 | None:intergenic | 45.0% | |
| ACTAGAGTGTGTCCGAGAAT+TGG | - | chr8_1:70707486-70707505 | Msa1211190:intron | 45.0% | |
| TCTACAGTGGCTATGAGAGA+AGG | - | chr8_1:70707713-70707732 | Msa1211190:CDS | 45.0% | |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | - | chr8_1:70707719-70707738 | Msa1211190:CDS | 45.0% |
| !! | TTTGAAGAAGTGCTTCAGCC+AGG | - | chr8_1:70707746-70707765 | Msa1211190:CDS | 45.0% |
| ! | GCGACATCCAAGTAGAGTTT+TGG | + | chr8_1:70708411-70708430 | None:intergenic | 45.0% |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8_1:70708552-70708571 | Msa1211190:intron | 45.0% | |
| ATCAGCTGCAAGAATGAGGT+TGG | - | chr8_1:70708992-70709011 | Msa1211190:intron | 45.0% | |
| AAGAATGAGGTTGGCAGCTA+AGG | - | chr8_1:70709001-70709020 | Msa1211190:intron | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8_1:70709047-70709066 | Msa1211190:intron | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | + | chr8_1:70709126-70709145 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | - | chr8_1:70709134-70709153 | Msa1211190:intron | 45.0% | |
| ACATCTTTAGCACTTGTCCC+TGG | + | chr8_1:70709176-70709195 | None:intergenic | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8_1:70709263-70709282 | Msa1211190:intron | 45.0% | |
| !!! | ATTTTATTTTCATTTATATT+AGG | - | chr8_1:70707962-70707981 | Msa1211190:CDS | 5.0% |
| ! | GGAAGGACGTTGGTTGAAGT+TGG | + | chr8_1:70706949-70706968 | None:intergenic | 50.0% |
| TGATGCAACCCGGATAGAGT+TGG | + | chr8_1:70707284-70707303 | None:intergenic | 50.0% | |
| AGAGTGTGTCCGAGAATTGG+AGG | - | chr8_1:70707489-70707508 | Msa1211190:intron | 50.0% | |
| CATTGCATGCCATGGTTCCT+GGG | - | chr8_1:70707773-70707792 | Msa1211190:intron | 50.0% | |
| TGCCATGGTTCCTGGGAAAA+CGG | - | chr8_1:70707780-70707799 | Msa1211190:intron | 50.0% | |
| ! | ATCCGTTTTCCCAGGAACCA+TGG | + | chr8_1:70707785-70707804 | None:intergenic | 50.0% |
| !! | TTCCTGGGAAAACGGATTGC+CGG | - | chr8_1:70707788-70707807 | Msa1211190:intron | 50.0% |
| CTCCCTTCGGCTACAACAAT+TGG | - | chr8_1:70707817-70707836 | Msa1211190:intron | 50.0% | |
| !! | CTCATTAGCCTTGTCTGCCA+AGG | + | chr8_1:70708221-70708240 | None:intergenic | 50.0% |
| CTTGGCAGACAAGGCTAATG+AGG | - | chr8_1:70708219-70708238 | Msa1211190:intron | 50.0% | |
| GTTGGCAGCTAAGGAGAAAG+CGG | - | chr8_1:70709010-70709029 | Msa1211190:intron | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8_1:70709046-70709065 | Msa1211190:intron | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8_1:70709066-70709085 | None:intergenic | 50.0% | |
| CATCCACAATGGCTTGACGT+TGG | + | chr8_1:70709115-70709134 | None:intergenic | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8_1:70709113-70709132 | Msa1211190:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8_1:70709255-70709274 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8_1:70709269-70709288 | Msa1211190:intron | 50.0% | |
| GTTGCTAGCCAAATTCGCGA+TGG | - | chr8_1:70709305-70709324 | Msa1211190:intron | 50.0% | |
| GGAGAAGTCCATCGCGAATT+TGG | + | chr8_1:70709316-70709335 | None:intergenic | 50.0% | |
| ! | AATTCGCGATGGACTTCTCC+AGG | - | chr8_1:70709316-70709335 | Msa1211190:intron | 50.0% |
| ! | ATTCGCGATGGACTTCTCCA+GGG | - | chr8_1:70709317-70709336 | Msa1211190:intron | 50.0% |
| GAAGCTACTGATGAGAACCC+TGG | + | chr8_1:70709337-70709356 | None:intergenic | 50.0% | |
| CATGGCATGCAATGGCATCC+TGG | + | chr8_1:70707767-70707786 | None:intergenic | 55.0% | |
| CAGGATGCCATTGCATGCCA+TGG | - | chr8_1:70707765-70707784 | Msa1211190:intron | 55.0% | |
| CCAGGAACCATGGCATGCAA+TGG | + | chr8_1:70707775-70707794 | None:intergenic | 55.0% | |
| CCATTGCATGCCATGGTTCC+TGG | - | chr8_1:70707772-70707791 | Msa1211190:intron | 55.0% | |
| TTGCCGGTCATCTCTCCCTT+CGG | - | chr8_1:70707804-70707823 | Msa1211190:intron | 55.0% | |
| TAGCCGAAGGGAGAGATGAC+CGG | + | chr8_1:70707810-70707829 | None:intergenic | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | - | chr8_1:70708210-70708229 | Msa1211190:intron | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | + | chr8_1:70708216-70708235 | None:intergenic | 55.0% |
| AGCCCGATGAGCATGTGAAG+CGG | - | chr8_1:70708610-70708629 | Msa1211190:intron | 55.0% | |
| AGCCCGCTTCACATGCTCAT+CGG | + | chr8_1:70708616-70708635 | None:intergenic | 55.0% | |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8_1:70709052-70709071 | Msa1211190:intron | 55.0% | |
| TCGCCAACGTCAAGCCATTG+TGG | - | chr8_1:70709109-70709128 | Msa1211190:intron | 55.0% | |
| ! | GACCGGCAATCCGTTTTCCC+AGG | + | chr8_1:70707793-70707812 | None:intergenic | 60.0% |
| GCCCGATGAGCATGTGAAGC+GGG | - | chr8_1:70708611-70708630 | Msa1211190:intron | 60.0% | |
| GCCCGCTTCACATGCTCATC+GGG | + | chr8_1:70708615-70708634 | None:intergenic | 60.0% | |
| GGCAGCTAAGGAGAAAGCGG+AGG | - | chr8_1:70709013-70709032 | Msa1211190:intron | 60.0% | |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8_1:70709281-70709300 | None:intergenic | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8_1:70709290-70709309 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 70706546 | 70709627 | 70706546 | ID=Msa1211190;Name=Msa1211190 |
| chr8_1 | mRNA | 70706546 | 70709627 | 70706546 | ID=Msa1211190-mRNA-1;Parent=Msa1211190;Name=Msa1211190-mRNA-1;_AED=0.19;_eAED=0.19;_QI=270|1|1|1|0.66|0.57|7|275|284 |
| chr8_1 | exon | 70706546 | 70707176 | 70706546 | ID=Msa1211190-mRNA-1:exon:23694;Parent=Msa1211190-mRNA-1 |
| chr8_1 | exon | 70707519 | 70707615 | 70707519 | ID=Msa1211190-mRNA-1:exon:23693;Parent=Msa1211190-mRNA-1 |
| chr8_1 | exon | 70707691 | 70707782 | 70707691 | ID=Msa1211190-mRNA-1:exon:23692;Parent=Msa1211190-mRNA-1 |
| chr8_1 | exon | 70707878 | 70707998 | 70707878 | ID=Msa1211190-mRNA-1:exon:23691;Parent=Msa1211190-mRNA-1 |
| chr8_1 | exon | 70708308 | 70708506 | 70708308 | ID=Msa1211190-mRNA-1:exon:23690;Parent=Msa1211190-mRNA-1 |
| chr8_1 | exon | 70709325 | 70709334 | 70709325 | ID=Msa1211190-mRNA-1:exon:23689;Parent=Msa1211190-mRNA-1 |
| chr8_1 | exon | 70709378 | 70709627 | 70709378 | ID=Msa1211190-mRNA-1:exon:23688;Parent=Msa1211190-mRNA-1 |
| chr8_1 | five_prime_UTR | 70709378 | 70709627 | 70709378 | ID=Msa1211190-mRNA-1:five_prime_utr;Parent=Msa1211190-mRNA-1 |
| chr8_1 | five_prime_UTR | 70709325 | 70709334 | 70709325 | ID=Msa1211190-mRNA-1:five_prime_utr;Parent=Msa1211190-mRNA-1 |
| chr8_1 | five_prime_UTR | 70708497 | 70708506 | 70708497 | ID=Msa1211190-mRNA-1:five_prime_utr;Parent=Msa1211190-mRNA-1 |
| chr8_1 | CDS | 70708308 | 70708496 | 70708308 | ID=Msa1211190-mRNA-1:cds;Parent=Msa1211190-mRNA-1 |
| chr8_1 | CDS | 70707878 | 70707998 | 70707878 | ID=Msa1211190-mRNA-1:cds;Parent=Msa1211190-mRNA-1 |
| chr8_1 | CDS | 70707691 | 70707782 | 70707691 | ID=Msa1211190-mRNA-1:cds;Parent=Msa1211190-mRNA-1 |
| chr8_1 | CDS | 70707519 | 70707615 | 70707519 | ID=Msa1211190-mRNA-1:cds;Parent=Msa1211190-mRNA-1 |
| chr8_1 | CDS | 70706821 | 70707176 | 70706821 | ID=Msa1211190-mRNA-1:cds;Parent=Msa1211190-mRNA-1 |
| chr8_1 | three_prime_UTR | 70706546 | 70706820 | 70706546 | ID=Msa1211190-mRNA-1:three_prime_utr;Parent=Msa1211190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
