Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299450 | RHN63602.1 | 100.000 | 284 | 0 | 0 | 1 | 284 | 6 | 289 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299450 | sp|Q9FM19|HIR1_ARATH | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299450 | A0A396IDJ7 | 100.000 | 284 | 0 | 0 | 1 | 284 | 6 | 289 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0336640 | Msa1299450 | 0.813865 | 2.061699e-51 | -8.615850e-47 |
| Msa1211190 | Msa1299450 | 0.890001 | 1.461205e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299450 | MtrunA17_Chr4g0060091 | 100.000 | 284 | 0 | 0 | 1 | 284 | 6 | 289 | 0.0 | 588 |
| Msa1299450 | MtrunA17_Chr4g0060171 | 90.102 | 293 | 20 | 1 | 1 | 284 | 1 | 293 | 0.0 | 541 |
| Msa1299450 | MtrunA17_Chr4g0060111 | 94.755 | 286 | 13 | 1 | 1 | 284 | 1 | 286 | 0.0 | 540 |
| Msa1299450 | MtrunA17_Chr4g0060151 | 94.755 | 286 | 13 | 1 | 1 | 284 | 1 | 286 | 0.0 | 540 |
| Msa1299450 | MtrunA17_Chr4g0060101 | 94.366 | 284 | 16 | 0 | 1 | 284 | 1 | 284 | 0.0 | 539 |
| Msa1299450 | MtrunA17_Chr6g0452801 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 1.82e-178 | 493 |
| Msa1299450 | MtrunA17_Chr8g0362631 | 80.142 | 282 | 56 | 0 | 1 | 282 | 1 | 282 | 1.10e-176 | 488 |
| Msa1299450 | MtrunA17_Chr6g0476481 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 8.25e-116 | 334 |
| Msa1299450 | MtrunA17_Chr6g0476411 | 55.102 | 49 | 22 | 0 | 234 | 282 | 1 | 49 | 7.05e-17 | 73.2 |
| Msa1299450 | MtrunA17_Chr6g0476421 | 55.932 | 59 | 25 | 1 | 148 | 205 | 1 | 59 | 4.36e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299450 | AT5G62740.1 | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 532 |
| Msa1299450 | AT1G69840.1 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.47e-172 | 478 |
| Msa1299450 | AT1G69840.2 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.47e-172 | 478 |
| Msa1299450 | AT1G69840.5 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.47e-172 | 478 |
| Msa1299450 | AT1G69840.7 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.47e-172 | 478 |
| Msa1299450 | AT1G69840.4 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.47e-172 | 478 |
| Msa1299450 | AT1G69840.6 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.47e-172 | 478 |
| Msa1299450 | AT1G69840.3 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.47e-172 | 478 |
| Msa1299450 | AT3G01290.1 | 78.092 | 283 | 62 | 0 | 1 | 283 | 1 | 283 | 1.08e-168 | 468 |
| Msa1299450 | AT5G51570.1 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 4.73e-120 | 345 |
Find 100 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTTTGAAAGAAAT+TGG | 0.117209 | 8_3:+60639328 | Msa1299450:CDS |
| CGATTTGGTGATGAAGTATT+TGG | 0.167487 | 8_3:+60639728 | Msa1299450:three_prime_UTR |
| ATATACCATTTATAATTAAT+AGG | 0.219579 | 8_3:+60636789 | Msa1299450:five_prime_UTR |
| ATAGTTGATACTGTAATATT+TGG | 0.227892 | 8_3:-60639575 | None:intergenic |
| TCGCCCCTATTAATTATAAA+TGG | 0.245174 | 8_3:-60636794 | None:intergenic |
| CTATTCTCATTGCAGTAATC+AGG | 0.273861 | 8_3:+60638480 | Msa1299450:intron |
| GGAGAAGTCCATCGCGAATT+TGG | 0.274844 | 8_3:-60639417 | None:intergenic |
| TATACCATTTATAATTAATA+GGG | 0.309618 | 8_3:+60636790 | Msa1299450:five_prime_UTR |
| ATGACAAAATATATCTTTGC+AGG | 0.317521 | 8_3:-60639602 | None:intergenic |
| CCATTGCATGCCATGGTTCC+TGG | 0.324425 | 8_3:+60637876 | Msa1299450:CDS |
| TTGACACTTTGAAAGAAATT+GGG | 0.334978 | 8_3:+60639329 | Msa1299450:CDS |
| GCGTCATCCAAGTAGAGTTT+TGG | 0.342771 | 8_3:-60638512 | None:intergenic |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8_3:+60638656 | Msa1299450:intron |
| CTCCCTTCGGCTACAACAAT+TGG | 0.345628 | 8_3:+60637921 | Msa1299450:CDS |
| TAATAGGGGCGATTAATATC+AGG | 0.376790 | 8_3:+60636805 | Msa1299450:five_prime_UTR |
| TCCTATCTTTAGTTAATTTG+AGG | 0.383989 | 8_3:+60636931 | Msa1299450:intron |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.407086 | 8_3:+60637823 | Msa1299450:CDS |
| ACATTGCAGTTAAAAGCAAA+TGG | 0.407909 | 8_3:+60637762 | Msa1299450:intron |
| TTCCTGGGAAAACGGATTGC+CGG | 0.420365 | 8_3:+60637892 | Msa1299450:CDS |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8_3:+60639238 | Msa1299450:CDS |
| TTTAGATAACTTGTATATCC+AGG | 0.435704 | 8_3:-60639860 | None:intergenic |
| AATTCGCGATGGACTTCTCC+AGG | 0.436039 | 8_3:+60639420 | Msa1299450:CDS |
| TGCTAAAGATGTCATGGATA+TGG | 0.438467 | 8_3:+60639288 | Msa1299450:CDS |
| CATTGCAGTTAAAAGCAAAT+GGG | 0.439348 | 8_3:+60637763 | Msa1299450:intron |
| GCCCGCTTCACATGCTCATC+GGG | 0.440215 | 8_3:-60638716 | None:intergenic |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8_3:+60639178 | Msa1299450:CDS |
| TGCCATGGTTCCTGGGAAAA+CGG | 0.457814 | 8_3:+60637884 | Msa1299450:CDS |
| GTATCTTTGTGGGATCGATT+TGG | 0.473513 | 8_3:+60639713 | Msa1299450:intron |
| GTATTTGGAGGACTGTTTAA+CGG | 0.475063 | 8_3:+60639743 | Msa1299450:three_prime_UTR |
| AATCAGCCGAACAGTGGAAA+AGG | 0.476372 | 8_3:-60636694 | None:intergenic |
| AGCCCGCTTCACATGCTCAT+CGG | 0.481339 | 8_3:-60638717 | None:intergenic |
| AAGAATGAGGTTGGCAGCTA+AGG | 0.482595 | 8_3:+60639105 | Msa1299450:CDS |
| GCCCGATGAGCATGTGAAGC+GGG | 0.484110 | 8_3:+60638715 | Msa1299450:CDS |
| GTTGATACTGTAATATTTGG+AGG | 0.489947 | 8_3:-60639572 | None:intergenic |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8_3:+60638305 | Msa1299450:CDS |
| CAGTGTTCCAAAACTCTACT+TGG | 0.493504 | 8_3:+60638505 | Msa1299450:CDS |
| CATGGCATGCAATGGCATCC+TGG | 0.506841 | 8_3:-60637868 | None:intergenic |
| TATCCAATTGTTGTAGCCGA+AGG | 0.512577 | 8_3:-60637924 | None:intergenic |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8_3:+60639183 | Msa1299450:CDS |
| ATCAGCTGCAAGAATGAGGT+TGG | 0.517543 | 8_3:+60639096 | Msa1299450:intron |
| CTTGGCAGACAAGGCTAATG+AGG | 0.518494 | 8_3:+60638323 | Msa1299450:CDS |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8_3:-60639359 | None:intergenic |
| CATTGCATGCCATGGTTCCT+GGG | 0.523914 | 8_3:+60637877 | Msa1299450:CDS |
| TATTCTCATTGCAGTAATCA+GGG | 0.525164 | 8_3:+60638481 | Msa1299450:intron |
| CACTTCATATCTGATTTGTA+CGG | 0.525495 | 8_3:+60639470 | Msa1299450:three_prime_UTR |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8_3:+60639373 | Msa1299450:CDS |
| TTTGGTGATGAAGTATTTGG+AGG | 0.528930 | 8_3:+60639731 | Msa1299450:three_prime_UTR |
| TTTGAAGAAGTGCTTCAGCC+AGG | 0.529505 | 8_3:+60637850 | Msa1299450:CDS |
| ACAGTAACAAACCTTTGTCT+TGG | 0.530913 | 8_3:-60637959 | None:intergenic |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8_3:+60639217 | Msa1299450:CDS |
| ACATCTTTAGCACTTGTCCC+TGG | 0.540845 | 8_3:-60639277 | None:intergenic |
| TAGCCGAAGGGAGAGATGAC+CGG | 0.541932 | 8_3:-60637911 | None:intergenic |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8_3:+60639184 | Msa1299450:CDS |
| GACAAGTGCTAAAGATGTCA+TGG | 0.545051 | 8_3:+60639282 | Msa1299450:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8_3:+60639156 | Msa1299450:CDS |
| TGACACTTTGAAAGAAATTG+GGG | 0.551717 | 8_3:+60639330 | Msa1299450:CDS |
| CTCATTAGCCTTGTCTGCCA+AGG | 0.555637 | 8_3:-60638322 | None:intergenic |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8_3:-60639391 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8_3:+60639367 | Msa1299450:CDS |
| CGTACAAATCAGATATGAAG+TGG | 0.567066 | 8_3:-60639469 | None:intergenic |
| TTGCCGGTCATCTCTCCCTT+CGG | 0.567067 | 8_3:+60637908 | Msa1299450:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8_3:+60639179 | Msa1299450:CDS |
| ACTAGACTATCACCTGTCCC+TGG | 0.569122 | 8_3:+60639842 | Msa1299450:three_prime_UTR |
| TAACTTGTATATCCAGGGAC+AGG | 0.570703 | 8_3:-60639854 | None:intergenic |
| CAGGATGCCATTGCATGCCA+TGG | 0.571416 | 8_3:+60637869 | Msa1299450:CDS |
| TTAGATAACTTGTATATCCA+GGG | 0.571822 | 8_3:-60639859 | None:intergenic |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8_3:-60639356 | None:intergenic |
| GAAGCTACTGATGAGAACCC+TGG | 0.574524 | 8_3:-60639438 | None:intergenic |
| ATCCAATTGTTGTAGCCGAA+GGG | 0.579325 | 8_3:-60637923 | None:intergenic |
| CCAGGAACCATGGCATGCAA+TGG | 0.581813 | 8_3:-60637876 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.585634 | 8_3:+60638737 | Msa1299450:CDS |
| GTTGGCAGCTAAGGAGAAAG+CGG | 0.586849 | 8_3:+60639114 | Msa1299450:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8_3:+60638314 | Msa1299450:CDS |
| ATACCATTTATAATTAATAG+GGG | 0.589545 | 8_3:+60636791 | Msa1299450:five_prime_UTR |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8_3:-60639167 | None:intergenic |
| TTTGATCAGCTGCAAGAATG+AGG | 0.600186 | 8_3:+60639092 | Msa1299450:intron |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8_3:+60638547 | Msa1299450:CDS |
| TTAATTAATCAGCCGAACAG+TGG | 0.611605 | 8_3:-60636700 | None:intergenic |
| TCTACAGTGGCTATGAGAGA+AGG | 0.612018 | 8_3:+60637817 | Msa1299450:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.621419 | 8_3:+60638565 | Msa1299450:CDS |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8_3:+60638351 | Msa1299450:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8_3:-60638317 | None:intergenic |
| ATTGCAGTTAAAAGCAAATG+GGG | 0.628697 | 8_3:+60637764 | Msa1299450:intron |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8_3:+60638349 | Msa1299450:CDS |
| GGCAGCTAAGGAGAAAGCGG+AGG | 0.632411 | 8_3:+60639117 | Msa1299450:CDS |
| AGCCCGATGAGCATGTGAAG+CGG | 0.638188 | 8_3:+60638714 | Msa1299450:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8_3:+60639150 | Msa1299450:CDS |
| TCGCCAACGTCAAGCCATTG+TGG | 0.640251 | 8_3:+60639213 | Msa1299450:CDS |
| GTTGCTAGCCAAATTCGCGA+TGG | 0.641354 | 8_3:+60639409 | Msa1299450:CDS |
| CATCCACAATGGCTTGACGT+TGG | 0.649829 | 8_3:-60639216 | None:intergenic |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8_3:+60639151 | Msa1299450:CDS |
| ATTCGCGATGGACTTCTCCA+GGG | 0.652495 | 8_3:+60639421 | Msa1299450:CDS |
| CAAATCAGATATGAAGTGGG+AGG | 0.656567 | 8_3:-60639465 | None:intergenic |
| GTACAAATCAGATATGAAGT+GGG | 0.663713 | 8_3:-60639468 | None:intergenic |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8_3:-60639227 | None:intergenic |
| AAAATGTGAGACCAAGACAA+AGG | 0.665463 | 8_3:+60637948 | Msa1299450:CDS |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8_3:-60639382 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8_3:+60638350 | Msa1299450:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.697140 | 8_3:-60639312 | None:intergenic |
| GCAAGTTGATCAATCTACAG+TGG | 0.699512 | 8_3:+60637804 | Msa1299450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACCATTTATAATTAAT+AGG | + | chr8_3:60636789-60636808 | Msa1299450:five_prime_UTR | 10.0% |
| !! | TATACCATTTATAATTAATA+GGG | + | chr8_3:60636790-60636809 | Msa1299450:five_prime_UTR | 10.0% |
| !! | ATACCATTTATAATTAATAG+GGG | + | chr8_3:60636791-60636810 | Msa1299450:five_prime_UTR | 15.0% |
| !! | ACGAATATTATTTATTGATA+TGG | + | chr8_3:60638600-60638619 | Msa1299450:intron | 15.0% |
| !! | GGAAATAAAATTAATTACAA+AGG | - | chr8_3:60638834-60638853 | None:intergenic | 15.0% |
| !!! | ATTAATTTTATTTCCAAAAG+AGG | + | chr8_3:60638839-60638858 | Msa1299450:intron | 15.0% |
| !!! | AAAGATATATTTTGTCATTA+AGG | + | chr8_3:60639607-60639626 | Msa1299450:three_prime_UTR | 15.0% |
| !! | TTGTATGATACAAGAAAATA+CGG | - | chr8_3:60636978-60636997 | None:intergenic | 20.0% |
| !! | TTAAAGAAACTTAAAGTCAT+AGG | - | chr8_3:60637197-60637216 | None:intergenic | 20.0% |
| !!! | TATAGGATTTCTTGTTTAAT+TGG | - | chr8_3:60637470-60637489 | None:intergenic | 20.0% |
| !! | TATGTATGTTATAGACTTAT+TGG | - | chr8_3:60638029-60638048 | None:intergenic | 20.0% |
| !! | ATAGATAAACATGTAATAAG+TGG | + | chr8_3:60638425-60638444 | Msa1299450:intron | 20.0% |
| !!! | ATAGTTGATACTGTAATATT+TGG | - | chr8_3:60639578-60639597 | None:intergenic | 20.0% |
| !! | ACATATTCTATTATGGAAAA+TGG | + | chr8_3:60639658-60639677 | Msa1299450:intron | 20.0% |
| !!! | TAATTGTTTTGTATCTTTGT+GGG | + | chr8_3:60639703-60639722 | Msa1299450:intron | 20.0% |
| !! | TCCTATCTTTAGTTAATTTG+AGG | + | chr8_3:60636931-60636950 | Msa1299450:intron | 25.0% |
| ! | ACCTCAAATTAACTAAAGAT+AGG | - | chr8_3:60636935-60636954 | None:intergenic | 25.0% |
| ! | CTTCTGTCTATATATATATG+TGG | + | chr8_3:60637628-60637647 | Msa1299450:intron | 25.0% |
| !! | ATATGTGGCTTGTATATAAA+TGG | + | chr8_3:60637643-60637662 | Msa1299450:intron | 25.0% |
| !! | TAACATACATAACTTCGTTT+TGG | + | chr8_3:60638038-60638057 | Msa1299450:intron | 25.0% |
| ! | CCATAGTTAAGAAAACATAT+AGG | - | chr8_3:60638121-60638140 | None:intergenic | 25.0% |
| !! | CCTATATGTTTTCTTAACTA+TGG | + | chr8_3:60638118-60638137 | Msa1299450:intron | 25.0% |
| ! | TTTACTATTTATTTGCTTGC+AGG | + | chr8_3:60638257-60638276 | Msa1299450:intron | 25.0% |
| ! | CAAAAACATAAGCTTGAATT+TGG | - | chr8_3:60638377-60638396 | None:intergenic | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | + | chr8_3:60638378-60638397 | Msa1299450:CDS | 25.0% |
| ! | TTTATTGATATGGTGAATTG+TGG | + | chr8_3:60638610-60638629 | Msa1299450:intron | 25.0% |
| ! | TAACTTTGAATAATCTCAAC+AGG | + | chr8_3:60638640-60638659 | Msa1299450:intron | 25.0% |
| ! | CATATAAAAACAATGTTGTG+AGG | - | chr8_3:60638788-60638807 | None:intergenic | 25.0% |
| ! | GATACTTAATAATAAGAACC+TGG | - | chr8_3:60638946-60638965 | None:intergenic | 25.0% |
| !! | ATTGCCATATTTTCTTATAC+TGG | + | chr8_3:60639061-60639080 | Msa1299450:intron | 25.0% |
| ! | GAAACCAGTATAAGAAAATA+TGG | - | chr8_3:60639068-60639087 | None:intergenic | 25.0% |
| !! | TTTGACACTTTGAAAGAAAT+TGG | + | chr8_3:60639328-60639347 | Msa1299450:CDS | 25.0% |
| !! | TTGACACTTTGAAAGAAATT+GGG | + | chr8_3:60639329-60639348 | Msa1299450:CDS | 25.0% |
| ! | ATGACAAAATATATCTTTGC+AGG | - | chr8_3:60639605-60639624 | None:intergenic | 25.0% |
| !!! | ACATGGTTTTAAATTGTTGA+AGG | - | chr8_3:60639637-60639656 | None:intergenic | 25.0% |
| ! | GTGACACAAAAATACTAATT+TGG | + | chr8_3:60639680-60639699 | Msa1299450:intron | 25.0% |
| !!! | GTAATTGTTTTGTATCTTTG+TGG | + | chr8_3:60639702-60639721 | Msa1299450:intron | 25.0% |
| ! | AGACAGAAAGTAAAAAATCA+CGG | - | chr8_3:60639774-60639793 | None:intergenic | 25.0% |
| ! | AATATTCCTTTTCCACTGTT+CGG | + | chr8_3:60636688-60636707 | Msa1299450:five_prime_UTR | 30.0% |
| TCGCCCCTATTAATTATAAA+TGG | - | chr8_3:60636797-60636816 | None:intergenic | 30.0% | |
| TGTCGATCATTATTTATAGC+TGG | + | chr8_3:60637009-60637028 | Msa1299450:intron | 30.0% | |
| !!! | TTATAGCTGGTTTGTTTTCA+TGG | + | chr8_3:60637022-60637041 | Msa1299450:intron | 30.0% |
| ! | TACAAACTGTATCTTTAGGA+AGG | - | chr8_3:60637070-60637089 | None:intergenic | 30.0% |
| AAGCTACAAACTGTATCTTT+AGG | - | chr8_3:60637074-60637093 | None:intergenic | 30.0% | |
| TCCTTACATATCTTATACCA+CGG | - | chr8_3:60637105-60637124 | None:intergenic | 30.0% | |
| AAGAAAACACTTGCAAATAG+CGG | - | chr8_3:60637304-60637323 | None:intergenic | 30.0% | |
| ATTCATGCATAAGAACTAAG+AGG | - | chr8_3:60637444-60637463 | None:intergenic | 30.0% | |
| AACAAGAAATCCTATAGTAG+AGG | + | chr8_3:60637474-60637493 | Msa1299450:intron | 30.0% | |
| AAATTTGATCTCTCTTGTTG+AGG | + | chr8_3:60637521-60637540 | Msa1299450:intron | 30.0% | |
| CACTCTAGTAGTAAAACAAA+CGG | - | chr8_3:60637579-60637598 | None:intergenic | 30.0% | |
| TATATAGACAGAAGTCTTGA+TGG | - | chr8_3:60637622-60637641 | None:intergenic | 30.0% | |
| ACATTGCAGTTAAAAGCAAA+TGG | + | chr8_3:60637762-60637781 | Msa1299450:intron | 30.0% | |
| CATTGCAGTTAAAAGCAAAT+GGG | + | chr8_3:60637763-60637782 | Msa1299450:intron | 30.0% | |
| ATTGCAGTTAAAAGCAAATG+GGG | + | chr8_3:60637764-60637783 | Msa1299450:intron | 30.0% | |
| TATAGACTTATTGGTATGCA+TGG | - | chr8_3:60638020-60638039 | None:intergenic | 30.0% | |
| AATCAAAATAACATAGCTCC+TGG | - | chr8_3:60638098-60638117 | None:intergenic | 30.0% | |
| ATGGTTATCTCTTTCGTTAT+TGG | + | chr8_3:60638137-60638156 | Msa1299450:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | + | chr8_3:60638349-60638368 | Msa1299450:CDS | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | + | chr8_3:60638350-60638369 | Msa1299450:CDS | 30.0% | |
| ATGTTTATCTATTGCTAAGC+AGG | - | chr8_3:60638417-60638436 | None:intergenic | 30.0% | |
| TATTCTCATTGCAGTAATCA+GGG | + | chr8_3:60638481-60638500 | Msa1299450:intron | 30.0% | |
| AAATGAAATTGCAAAAGCTG+TGG | + | chr8_3:60638547-60638566 | Msa1299450:CDS | 30.0% | |
| ! | AAACACTTATTGACCTCTTT+TGG | - | chr8_3:60638855-60638874 | None:intergenic | 30.0% |
| GAAACATCGTAAATGATACA+AGG | - | chr8_3:60639000-60639019 | None:intergenic | 30.0% | |
| ATAAGAAAATATGGCAATCC+AGG | - | chr8_3:60639059-60639078 | None:intergenic | 30.0% | |
| ! | GATTTTCAGTTAATGTACCA+GGG | + | chr8_3:60639260-60639279 | Msa1299450:CDS | 30.0% |
| ! | TGACACTTTGAAAGAAATTG+GGG | + | chr8_3:60639330-60639349 | Msa1299450:CDS | 30.0% |
| GTACAAATCAGATATGAAGT+GGG | - | chr8_3:60639471-60639490 | None:intergenic | 30.0% | |
| ! | CACTTCATATCTGATTTGTA+CGG | + | chr8_3:60639470-60639489 | Msa1299450:three_prime_UTR | 30.0% |
| GTTGATACTGTAATATTTGG+AGG | - | chr8_3:60639575-60639594 | None:intergenic | 30.0% | |
| CCATAATAGAATATGTGACA+TGG | - | chr8_3:60639654-60639673 | None:intergenic | 30.0% | |
| CCATGTCACATATTCTATTA+TGG | + | chr8_3:60639651-60639670 | Msa1299450:intron | 30.0% | |
| TTAATTAATCAGCCGAACAG+TGG | - | chr8_3:60636703-60636722 | None:intergenic | 35.0% | |
| TAATAGGGGCGATTAATATC+AGG | + | chr8_3:60636805-60636824 | Msa1299450:five_prime_UTR | 35.0% | |
| TTTGCAAATCAAAGCTGACT+TGG | - | chr8_3:60636911-60636930 | None:intergenic | 35.0% | |
| ACCGTGGTATAAGATATGTA+AGG | + | chr8_3:60637101-60637120 | Msa1299450:intron | 35.0% | |
| ATCCTATAGTAGAGGTAACT+AGG | + | chr8_3:60637482-60637501 | Msa1299450:intron | 35.0% | |
| TCCTATAGTAGAGGTAACTA+GGG | + | chr8_3:60637483-60637502 | Msa1299450:intron | 35.0% | |
| ! | GTGGCTTGTATATAAATGGT+CGG | + | chr8_3:60637647-60637666 | Msa1299450:intron | 35.0% |
| AAAATGTGAGACCAAGACAA+AGG | + | chr8_3:60637948-60637967 | Msa1299450:CDS | 35.0% | |
| ACAGTAACAAACCTTTGTCT+TGG | - | chr8_3:60637962-60637981 | None:intergenic | 35.0% | |
| !!! | TACATAACTTCGTTTTGGCT+AGG | + | chr8_3:60638043-60638062 | Msa1299450:intron | 35.0% |
| ATTTATATTAGGCGTCATCC+AGG | + | chr8_3:60638077-60638096 | Msa1299450:intron | 35.0% | |
| TCTCTTTCGTTATTGGTATC+AGG | + | chr8_3:60638144-60638163 | Msa1299450:intron | 35.0% | |
| TCGATTGAATTCATGCTGAT+TGG | + | chr8_3:60638233-60638252 | Msa1299450:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | + | chr8_3:60638351-60638370 | Msa1299450:CDS | 35.0% | |
| TCTATTGCTAAGCAGGTTTA+TGG | - | chr8_3:60638410-60638429 | None:intergenic | 35.0% | |
| CTATTCTCATTGCAGTAATC+AGG | + | chr8_3:60638480-60638499 | Msa1299450:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | + | chr8_3:60638737-60638756 | Msa1299450:CDS | 35.0% | |
| ! | AAAACCTACCTTTTTCCTCT+TGG | + | chr8_3:60638875-60638894 | Msa1299450:intron | 35.0% |
| ATGATGTACCAAGAGGAAAA+AGG | - | chr8_3:60638886-60638905 | None:intergenic | 35.0% | |
| CCAGGAACAAAGTAGATATT+TGG | - | chr8_3:60639041-60639060 | None:intergenic | 35.0% | |
| CCAAATATCTACTTTGTTCC+TGG | + | chr8_3:60639038-60639057 | Msa1299450:intron | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | + | chr8_3:60639179-60639198 | Msa1299450:CDS | 35.0% | |
| !! | TCTAAATATCTCTCTGGGAT+GGG | + | chr8_3:60639184-60639203 | Msa1299450:CDS | 35.0% |
| ! | GGATTTTCAGTTAATGTACC+AGG | + | chr8_3:60639259-60639278 | Msa1299450:CDS | 35.0% |
| TGCTAAAGATGTCATGGATA+TGG | + | chr8_3:60639288-60639307 | Msa1299450:CDS | 35.0% | |
| !! | TGTCAAAGTATTGAGTGACA+AGG | - | chr8_3:60639315-60639334 | None:intergenic | 35.0% |
| CGTACAAATCAGATATGAAG+TGG | - | chr8_3:60639472-60639491 | None:intergenic | 35.0% | |
| !! | CGATTTGGTGATGAAGTATT+TGG | + | chr8_3:60639728-60639747 | Msa1299450:three_prime_UTR | 35.0% |
| !! | TTTGGTGATGAAGTATTTGG+AGG | + | chr8_3:60639731-60639750 | Msa1299450:three_prime_UTR | 35.0% |
| GTATTTGGAGGACTGTTTAA+CGG | + | chr8_3:60639743-60639762 | Msa1299450:three_prime_UTR | 35.0% | |
| ! | TGTATCTTTAGGAAGGACGT+TGG | - | chr8_3:60637063-60637082 | None:intergenic | 40.0% |
| TTGTAGCTTCACTAAAACCG+TGG | + | chr8_3:60637085-60637104 | Msa1299450:intron | 40.0% | |
| AGAGTTGGAGAGTTGAAGTA+CGG | - | chr8_3:60637373-60637392 | None:intergenic | 40.0% | |
| TTCAACTCTCCAACTCTATC+CGG | + | chr8_3:60637376-60637395 | Msa1299450:intron | 40.0% | |
| ACCCTAGTTACCTCTACTAT+AGG | - | chr8_3:60637487-60637506 | None:intergenic | 40.0% | |
| GAGGTAACTAGGGTTTGTAT+TGG | + | chr8_3:60637493-60637512 | Msa1299450:intron | 40.0% | |
| TGATGGAAACCTCCAATTCT+CGG | - | chr8_3:60637605-60637624 | None:intergenic | 40.0% | |
| ! | TCCTGTATCTTGTTGAGTTG+AGG | + | chr8_3:60637719-60637738 | Msa1299450:intron | 40.0% |
| TCCTCAACTCAACAAGATAC+AGG | - | chr8_3:60637723-60637742 | None:intergenic | 40.0% | |
| !! | GCAAGTTGATCAATCTACAG+TGG | + | chr8_3:60637804-60637823 | Msa1299450:CDS | 40.0% |
| ATCCAATTGTTGTAGCCGAA+GGG | - | chr8_3:60637926-60637945 | None:intergenic | 40.0% | |
| TATCCAATTGTTGTAGCCGA+AGG | - | chr8_3:60637927-60637946 | None:intergenic | 40.0% | |
| CATGGAATGACATGATGGTT+TGG | - | chr8_3:60638002-60638021 | None:intergenic | 40.0% | |
| GTATGCATGGAATGACATGA+TGG | - | chr8_3:60638007-60638026 | None:intergenic | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | + | chr8_3:60638305-60638324 | Msa1299450:CDS | 40.0% | |
| !!! | CAAGTAGAGTTTTGGAACAC+TGG | - | chr8_3:60638507-60638526 | None:intergenic | 40.0% |
| CAGTGTTCCAAAACTCTACT+TGG | + | chr8_3:60638505-60638524 | Msa1299450:CDS | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | + | chr8_3:60638565-60638584 | Msa1299450:CDS | 40.0% | |
| AATGTTGTGAGGACATCTCA+CGG | - | chr8_3:60638777-60638796 | None:intergenic | 40.0% | |
| TGTACCAAGAGGAAAAAGGT+AGG | - | chr8_3:60638882-60638901 | None:intergenic | 40.0% | |
| TGCATGTATGATGTACCAAG+AGG | - | chr8_3:60638893-60638912 | None:intergenic | 40.0% | |
| CTTGGTACATCATACATGCA+TGG | + | chr8_3:60638893-60638912 | Msa1299450:intron | 40.0% | |
| ACATGCATGGACAACTATGA+AGG | + | chr8_3:60638906-60638925 | Msa1299450:intron | 40.0% | |
| CATGCATGGACAACTATGAA+GGG | + | chr8_3:60638907-60638926 | Msa1299450:intron | 40.0% | |
| AAGGGATACGTGTAATATCC+AGG | + | chr8_3:60638925-60638944 | Msa1299450:intron | 40.0% | |
| TTTGATCAGCTGCAAGAATG+AGG | + | chr8_3:60639092-60639111 | Msa1299450:intron | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | + | chr8_3:60639178-60639197 | Msa1299450:CDS | 40.0% | |
| ! | GTCTAAATATCTCTCTGGGA+TGG | + | chr8_3:60639183-60639202 | Msa1299450:CDS | 40.0% |
| GACAAGTGCTAAAGATGTCA+TGG | + | chr8_3:60639282-60639301 | Msa1299450:CDS | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | - | chr8_3:60639362-60639381 | None:intergenic | 40.0% | |
| CAAATCAGATATGAAGTGGG+AGG | - | chr8_3:60639468-60639487 | None:intergenic | 40.0% | |
| GTATCTTTGTGGGATCGATT+TGG | + | chr8_3:60639713-60639732 | Msa1299450:intron | 40.0% | |
| AATCAGCCGAACAGTGGAAA+AGG | - | chr8_3:60636697-60636716 | None:intergenic | 45.0% | |
| GAGTTGGAGAGTTGAAGTAC+GGG | - | chr8_3:60637372-60637391 | None:intergenic | 45.0% | |
| TCAACTCTCCAACTCTATCC+GGG | + | chr8_3:60637377-60637396 | Msa1299450:intron | 45.0% | |
| AGAGAATGTGTGATGCAACC+CGG | - | chr8_3:60637398-60637417 | None:intergenic | 45.0% | |
| ACTAGAGTGTGTCCGAGAAT+TGG | + | chr8_3:60637590-60637609 | Msa1299450:intron | 45.0% | |
| TCTACAGTGGCTATGAGAGA+AGG | + | chr8_3:60637817-60637836 | Msa1299450:CDS | 45.0% | |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | + | chr8_3:60637823-60637842 | Msa1299450:CDS | 45.0% |
| !! | TTTGAAGAAGTGCTTCAGCC+AGG | + | chr8_3:60637850-60637869 | Msa1299450:CDS | 45.0% |
| ! | GCGTCATCCAAGTAGAGTTT+TGG | - | chr8_3:60638515-60638534 | None:intergenic | 45.0% |
| CAACAGGCTATGTCAGCTTA+TGG | + | chr8_3:60638656-60638675 | Msa1299450:intron | 45.0% | |
| ATCAGCTGCAAGAATGAGGT+TGG | + | chr8_3:60639096-60639115 | Msa1299450:intron | 45.0% | |
| AAGAATGAGGTTGGCAGCTA+AGG | + | chr8_3:60639105-60639124 | Msa1299450:CDS | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | + | chr8_3:60639151-60639170 | Msa1299450:CDS | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | - | chr8_3:60639230-60639249 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | + | chr8_3:60639238-60639257 | Msa1299450:CDS | 45.0% | |
| ACATCTTTAGCACTTGTCCC+TGG | - | chr8_3:60639280-60639299 | None:intergenic | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | + | chr8_3:60639367-60639386 | Msa1299450:CDS | 45.0% | |
| !!! | ATTTTATTTTCATTTATATT+AGG | + | chr8_3:60638066-60638085 | Msa1299450:intron | 5.0% |
| ! | GGAAGGACGTTGGTTGAAGT+TGG | - | chr8_3:60637053-60637072 | None:intergenic | 50.0% |
| TGATGCAACCCGGATAGAGT+TGG | - | chr8_3:60637388-60637407 | None:intergenic | 50.0% | |
| AGAGTGTGTCCGAGAATTGG+AGG | + | chr8_3:60637593-60637612 | Msa1299450:intron | 50.0% | |
| CATTGCATGCCATGGTTCCT+GGG | + | chr8_3:60637877-60637896 | Msa1299450:CDS | 50.0% | |
| TGCCATGGTTCCTGGGAAAA+CGG | + | chr8_3:60637884-60637903 | Msa1299450:CDS | 50.0% | |
| ! | ATCCGTTTTCCCAGGAACCA+TGG | - | chr8_3:60637889-60637908 | None:intergenic | 50.0% |
| !! | TTCCTGGGAAAACGGATTGC+CGG | + | chr8_3:60637892-60637911 | Msa1299450:CDS | 50.0% |
| CTCCCTTCGGCTACAACAAT+TGG | + | chr8_3:60637921-60637940 | Msa1299450:CDS | 50.0% | |
| !! | CTCATTAGCCTTGTCTGCCA+AGG | - | chr8_3:60638325-60638344 | None:intergenic | 50.0% |
| CTTGGCAGACAAGGCTAATG+AGG | + | chr8_3:60638323-60638342 | Msa1299450:CDS | 50.0% | |
| GTTGGCAGCTAAGGAGAAAG+CGG | + | chr8_3:60639114-60639133 | Msa1299450:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | + | chr8_3:60639150-60639169 | Msa1299450:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | - | chr8_3:60639170-60639189 | None:intergenic | 50.0% | |
| CATCCACAATGGCTTGACGT+TGG | - | chr8_3:60639219-60639238 | None:intergenic | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | + | chr8_3:60639217-60639236 | Msa1299450:CDS | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | - | chr8_3:60639359-60639378 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | + | chr8_3:60639373-60639392 | Msa1299450:CDS | 50.0% | |
| GTTGCTAGCCAAATTCGCGA+TGG | + | chr8_3:60639409-60639428 | Msa1299450:CDS | 50.0% | |
| GGAGAAGTCCATCGCGAATT+TGG | - | chr8_3:60639420-60639439 | None:intergenic | 50.0% | |
| ! | AATTCGCGATGGACTTCTCC+AGG | + | chr8_3:60639420-60639439 | Msa1299450:CDS | 50.0% |
| ! | ATTCGCGATGGACTTCTCCA+GGG | + | chr8_3:60639421-60639440 | Msa1299450:CDS | 50.0% |
| GAAGCTACTGATGAGAACCC+TGG | - | chr8_3:60639441-60639460 | None:intergenic | 50.0% | |
| ACTAGACTATCACCTGTCCC+TGG | + | chr8_3:60639842-60639861 | Msa1299450:three_prime_UTR | 50.0% | |
| CATGGCATGCAATGGCATCC+TGG | - | chr8_3:60637871-60637890 | None:intergenic | 55.0% | |
| CAGGATGCCATTGCATGCCA+TGG | + | chr8_3:60637869-60637888 | Msa1299450:CDS | 55.0% | |
| CCAGGAACCATGGCATGCAA+TGG | - | chr8_3:60637879-60637898 | None:intergenic | 55.0% | |
| CCATTGCATGCCATGGTTCC+TGG | + | chr8_3:60637876-60637895 | Msa1299450:CDS | 55.0% | |
| TTGCCGGTCATCTCTCCCTT+CGG | + | chr8_3:60637908-60637927 | Msa1299450:CDS | 55.0% | |
| TAGCCGAAGGGAGAGATGAC+CGG | - | chr8_3:60637914-60637933 | None:intergenic | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | + | chr8_3:60638314-60638333 | Msa1299450:CDS | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | - | chr8_3:60638320-60638339 | None:intergenic | 55.0% |
| AGCCCGATGAGCATGTGAAG+CGG | + | chr8_3:60638714-60638733 | Msa1299450:CDS | 55.0% | |
| AGCCCGCTTCACATGCTCAT+CGG | - | chr8_3:60638720-60638739 | None:intergenic | 55.0% | |
| AATAAAGCGAGCCGAGGGTG+AGG | + | chr8_3:60639156-60639175 | Msa1299450:CDS | 55.0% | |
| TCGCCAACGTCAAGCCATTG+TGG | + | chr8_3:60639213-60639232 | Msa1299450:CDS | 55.0% | |
| ! | GACCGGCAATCCGTTTTCCC+AGG | - | chr8_3:60637897-60637916 | None:intergenic | 60.0% |
| GCCCGATGAGCATGTGAAGC+GGG | + | chr8_3:60638715-60638734 | Msa1299450:CDS | 60.0% | |
| GCCCGCTTCACATGCTCATC+GGG | - | chr8_3:60638719-60638738 | None:intergenic | 60.0% | |
| GGCAGCTAAGGAGAAAGCGG+AGG | + | chr8_3:60639117-60639136 | Msa1299450:CDS | 60.0% | |
| CGAACAGCACCAGGTCCATG+TGG | - | chr8_3:60639385-60639404 | None:intergenic | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | - | chr8_3:60639394-60639413 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 60636650 | 60639867 | 60636650 | ID=Msa1299450;Name=Msa1299450 |
| chr8_3 | mRNA | 60636650 | 60639867 | 60636650 | ID=Msa1299450-mRNA-1;Parent=Msa1299450;Name=Msa1299450-mRNA-1;_AED=0.26;_eAED=0.26;_QI=270|1|1|1|0.57|0.37|8|340|284 |
| chr8_3 | exon | 60636650 | 60636899 | 60636650 | ID=Msa1299450-mRNA-1:exon:17718;Parent=Msa1299450-mRNA-1 |
| chr8_3 | exon | 60636943 | 60636952 | 60636943 | ID=Msa1299450-mRNA-1:exon:17719;Parent=Msa1299450-mRNA-1 |
| chr8_3 | exon | 60637771 | 60637969 | 60637771 | ID=Msa1299450-mRNA-1:exon:17720;Parent=Msa1299450-mRNA-1 |
| chr8_3 | exon | 60638279 | 60638399 | 60638279 | ID=Msa1299450-mRNA-1:exon:17721;Parent=Msa1299450-mRNA-1 |
| chr8_3 | exon | 60638495 | 60638586 | 60638495 | ID=Msa1299450-mRNA-1:exon:17722;Parent=Msa1299450-mRNA-1 |
| chr8_3 | exon | 60638662 | 60638758 | 60638662 | ID=Msa1299450-mRNA-1:exon:17723;Parent=Msa1299450-mRNA-1 |
| chr8_3 | exon | 60639101 | 60639650 | 60639101 | ID=Msa1299450-mRNA-1:exon:17724;Parent=Msa1299450-mRNA-1 |
| chr8_3 | exon | 60639722 | 60639867 | 60639722 | ID=Msa1299450-mRNA-1:exon:17725;Parent=Msa1299450-mRNA-1 |
| chr8_3 | five_prime_UTR | 60636650 | 60636899 | 60636650 | ID=Msa1299450-mRNA-1:five_prime_utr;Parent=Msa1299450-mRNA-1 |
| chr8_3 | five_prime_UTR | 60636943 | 60636952 | 60636943 | ID=Msa1299450-mRNA-1:five_prime_utr;Parent=Msa1299450-mRNA-1 |
| chr8_3 | five_prime_UTR | 60637771 | 60637780 | 60637771 | ID=Msa1299450-mRNA-1:five_prime_utr;Parent=Msa1299450-mRNA-1 |
| chr8_3 | CDS | 60637781 | 60637969 | 60637781 | ID=Msa1299450-mRNA-1:cds;Parent=Msa1299450-mRNA-1 |
| chr8_3 | CDS | 60638279 | 60638399 | 60638279 | ID=Msa1299450-mRNA-1:cds;Parent=Msa1299450-mRNA-1 |
| chr8_3 | CDS | 60638495 | 60638586 | 60638495 | ID=Msa1299450-mRNA-1:cds;Parent=Msa1299450-mRNA-1 |
| chr8_3 | CDS | 60638662 | 60638758 | 60638662 | ID=Msa1299450-mRNA-1:cds;Parent=Msa1299450-mRNA-1 |
| chr8_3 | CDS | 60639101 | 60639456 | 60639101 | ID=Msa1299450-mRNA-1:cds;Parent=Msa1299450-mRNA-1 |
| chr8_3 | three_prime_UTR | 60639457 | 60639650 | 60639457 | ID=Msa1299450-mRNA-1:three_prime_utr;Parent=Msa1299450-mRNA-1 |
| chr8_3 | three_prime_UTR | 60639722 | 60639867 | 60639722 | ID=Msa1299450-mRNA-1:three_prime_utr;Parent=Msa1299450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
