AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1213120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1213120 MtrunA17_Chr4g0061671 97.701 87 2 0 35 121 1 87 9.25e-59 182
Msa1213120 MtrunA17_Chr6g0455511 79.070 86 18 0 35 120 1 86 8.59e-44 146
Msa1213120 MtrunA17_Chr7g0220111 79.070 86 18 0 35 120 1 86 1.78e-43 145
Msa1213120 MtrunA17_Chr3g0122251 77.273 88 20 0 35 122 1 88 4.05e-42 142
Msa1213120 MtrunA17_Chr5g0420091 75.000 88 21 1 35 121 1 88 2.60e-40 136
Msa1213120 MtrunA17_Chr8g0366231 67.816 87 26 1 35 121 1 85 1.56e-36 127
Msa1213120 MtrunA17_Chr8g0351051 78.947 76 15 1 35 110 1 75 7.77e-36 125
Msa1213120 MtrunA17_Chr4g0061691 74.026 77 20 0 35 111 1 77 1.17e-35 124
Msa1213120 MtrunA17_Chr8g0377561 94.828 58 3 0 35 92 1 58 1.15e-33 115
Msa1213120 MtrunA17_Chr7g0246381 85.246 61 9 0 35 95 1 61 1.22e-32 112
Msa1213120 MtrunA17_Chr5g0420081 55.769 104 45 1 35 138 1 103 8.84e-32 114
Msa1213120 MtrunA17_Chr6g0474371 52.727 110 52 0 35 144 1 110 1.10e-31 113
Msa1213120 MtrunA17_Chr7g0246431 51.240 121 54 2 37 157 3 118 1.20e-31 114
Msa1213120 MtrunA17_Chr2g0308251 66.667 75 25 0 35 109 1 75 6.04e-31 108
Msa1213120 MtrunA17_Chr3g0097101 64.198 81 28 1 26 106 7 86 8.67e-31 112
Msa1213120 MtrunA17_Chr8g0380021 68.000 75 23 1 32 106 14 87 9.54e-31 112
Msa1213120 MtrunA17_Chr1g0204111 60.227 88 34 1 28 115 10 96 9.57e-31 112
Msa1213120 MtrunA17_Chr2g0284911 69.863 73 21 1 34 106 15 86 2.75e-30 111
Msa1213120 MtrunA17_Chr3g0077501 68.056 72 22 1 35 106 1 71 3.01e-29 108
Msa1213120 MtrunA17_Chr4g0057151 72.464 69 18 1 37 105 3 70 4.63e-29 107
Msa1213120 MtrunA17_Chr8g0351041 65.278 72 24 1 37 108 3 73 6.76e-29 105
Msa1213120 MtrunA17_Chr8g0351031 65.278 72 24 1 37 108 3 73 1.51e-28 106
Msa1213120 MtrunA17_Chr7g0220121 62.821 78 29 0 35 112 1 78 2.14e-28 106
Msa1213120 MtrunA17_Chr4g0020221 66.216 74 24 1 35 108 1 73 2.44e-27 103
Msa1213120 MtrunA17_Chr4g0061681 88.679 53 2 1 136 188 4 52 3.62e-27 98.2
Msa1213120 MtrunA17_Chr1g0173161 68.116 69 22 0 35 103 1 69 3.92e-27 98.6
Msa1213120 MtrunA17_Chr2g0279821 62.500 72 26 1 35 106 1 71 3.02e-26 100
Msa1213120 MtrunA17_Chr4g0018421 59.459 74 30 0 35 108 1 74 7.39e-26 98.6
Msa1213120 MtrunA17_Chr5g0412271 50.962 104 47 2 35 138 1 100 1.97e-25 98.2
Msa1213120 MtrunA17_Chr5g0412461 52.577 97 42 2 35 131 1 93 3.75e-25 97.4
Msa1213120 MtrunA17_Chr3g0125241 45.455 99 53 1 35 132 26 124 1.18e-23 93.2
Msa1213120 MtrunA17_Chr5g0427921 61.667 60 23 0 35 94 1 60 3.99e-23 87.4
Msa1213120 MtrunA17_Chr4g0049901 44.340 106 57 2 35 139 27 131 1.24e-22 91.3
Msa1213120 MtrunA17_Chr4g0049541 55.556 72 31 1 35 106 1 71 1.43e-22 90.5
Msa1213120 MtrunA17_Chr1g0159661 53.333 75 34 1 35 108 1 75 1.57e-22 89.4
Msa1213120 MtrunA17_Chr5g0411691 54.930 71 31 1 35 105 1 70 2.00e-22 90.5
Msa1213120 MtrunA17_Chr1g0164791 54.795 73 32 1 35 106 1 73 3.22e-22 89.7
Msa1213120 MtrunA17_Chr5g0427401 46.988 83 43 1 35 117 1 82 6.17e-21 86.3
Msa1213120 MtrunA17_Chr3g0142191 56.716 67 29 0 35 101 1 67 9.81e-21 85.9
Msa1213120 MtrunA17_Chr4g0044071 62.069 58 22 0 35 92 1 58 1.59e-20 82.4
Msa1213120 MtrunA17_Chr3g0134451 55.714 70 31 0 35 104 1 70 2.60e-20 86.3
Msa1213120 MtrunA17_Chr5g0425191 63.793 58 21 0 35 92 1 58 4.00e-20 80.9
Msa1213120 MtrunA17_Chr5g0404951 53.425 73 33 1 35 106 1 73 4.14e-20 84.3
Msa1213120 MtrunA17_Chr1g0166611 45.745 94 51 0 50 143 20 113 1.07e-18 78.2
Msa1213120 MtrunA17_Chr2g0292791 55.357 56 25 0 36 91 9 64 1.63e-15 72.0
Msa1213120 MtrunA17_Chr3g0099421 43.529 85 45 1 7 91 8 89 2.16e-15 72.0
Msa1213120 MtrunA17_Chr1g0208561 53.333 60 26 1 34 91 5 64 6.03e-15 70.5
Msa1213120 MtrunA17_Chr3g0089141 53.333 60 26 1 34 91 5 64 6.28e-15 70.5
Msa1213120 MtrunA17_Chr1g0208581 53.571 56 26 0 36 91 9 64 8.54e-15 70.1
Msa1213120 MtrunA17_Chr8g0379021 50.000 60 30 0 32 91 8 67 8.75e-15 68.9
Msa1213120 MtrunA17_Chr2g0325971 50.820 61 28 1 33 91 4 64 1.88e-14 68.9
Msa1213120 MtrunA17_Chr5g0419601 53.333 60 28 0 32 91 5 64 2.44e-14 68.9
Msa1213120 MtrunA17_Chr5g0417661 52.830 53 25 0 35 87 56 108 2.66e-14 66.6
Msa1213120 MtrunA17_Chr2g0333981 48.387 62 32 0 30 91 6 67 2.78e-14 67.8
Msa1213120 MtrunA17_Chr1g0149391 55.357 56 25 0 36 91 9 64 3.00e-14 68.6
Msa1213120 MtrunA17_Chr3g0099411 51.786 56 27 0 36 91 9 64 4.43e-14 67.8
Msa1213120 MtrunA17_Chr1g0206701 51.786 56 27 0 36 91 9 64 5.29e-14 68.2
Msa1213120 MtrunA17_Chr1g0206721 51.786 56 27 0 36 91 9 64 5.98e-14 67.8
Msa1213120 MtrunA17_Chr8g0355091 51.786 56 27 0 36 91 9 64 6.62e-14 67.8
Msa1213120 MtrunA17_Chr1g0187361 51.786 56 27 0 36 91 9 64 9.83e-14 67.4
Msa1213120 MtrunA17_Chr1g0188671 51.786 56 27 0 36 91 47 102 1.30e-13 67.4
Msa1213120 MtrunA17_Chr8g0357771 36.893 103 56 2 35 128 1 103 1.34e-13 65.9
Msa1213120 MtrunA17_Chr2g0317451 53.571 56 26 0 36 91 9 64 1.43e-13 67.0
Msa1213120 MtrunA17_Chr2g0300421 33.043 115 70 2 36 143 9 123 1.43e-13 65.9
Msa1213120 MtrunA17_Chr2g0317481 53.571 56 26 0 36 91 9 64 1.53e-13 66.6
Msa1213120 MtrunA17_Chr8g0376821 49.123 57 29 0 35 91 1 57 2.16e-13 65.5
Msa1213120 MtrunA17_Chr5g0422421 37.255 102 56 2 36 137 9 102 3.41e-13 65.9
Msa1213120 MtrunA17_Chr5g0422941 53.571 56 26 0 36 91 9 64 4.57e-13 65.5
Msa1213120 MtrunA17_Chr1g0169761 49.123 57 29 0 35 91 1 57 9.09e-13 63.5
Msa1213120 MtrunA17_Chr4g0052061 45.763 59 32 0 35 93 1 59 1.03e-12 63.2
Msa1213120 MtrunA17_Chr1g0206991 48.214 56 29 0 36 91 9 64 1.53e-12 63.2
Msa1213120 MtrunA17_Chr1g0175611 47.368 57 30 0 35 91 1 57 1.72e-12 62.8
Msa1213120 MtrunA17_Chr4g0060841 49.057 53 27 0 35 87 1 53 1.98e-12 64.7
Msa1213120 MtrunA17_Chr4g0018951 64.286 42 15 0 50 91 26 67 2.97e-12 62.0
Msa1213120 MtrunA17_Chr1g0180591 45.614 57 31 0 35 91 1 57 4.56e-12 61.6
Msa1213120 MtrunA17_Chr4g0052081 44.068 59 33 0 35 93 1 59 5.08e-12 61.6
Msa1213120 MtrunA17_Chr1g0175601 47.368 57 30 0 35 91 1 57 5.20e-12 61.6
Msa1213120 MtrunA17_Chr4g0074101 45.614 57 31 0 35 91 1 57 5.50e-12 62.0
Msa1213120 MtrunA17_Chr3g0085241 45.000 60 33 0 32 91 37 96 5.56e-12 62.8
Msa1213120 MtrunA17_Chr3g0089151 44.643 56 31 0 36 91 9 64 2.60e-11 58.5
Msa1213120 MtrunA17_Chr2g0300441 48.276 58 28 1 36 91 7 64 2.72e-11 60.5
Msa1213120 MtrunA17_Chr3g0119901 43.333 60 34 0 32 91 5 64 3.28e-11 60.1
Msa1213120 MtrunA17_Chr3g0111841 52.000 50 24 0 42 91 2 51 3.50e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1213120 AT1G24260.3 68.182 110 34 1 35 144 1 109 2.07e-43 145
Msa1213120 AT1G24260.2 64.754 122 42 1 35 156 1 121 3.02e-43 145
Msa1213120 AT3G02310.2 79.310 87 17 1 35 120 1 87 6.25e-43 142
Msa1213120 AT3G02310.1 79.310 87 17 1 35 120 1 87 2.71e-42 142
Msa1213120 AT1G24260.1 77.273 88 20 0 35 122 1 88 2.74e-42 142
Msa1213120 AT5G15800.1 79.310 87 17 1 35 120 1 87 4.72e-42 142
Msa1213120 AT5G15800.2 79.310 87 17 1 35 120 1 87 8.14e-42 142
Msa1213120 AT2G03710.3 75.862 87 20 1 35 120 1 87 8.00e-41 137
Msa1213120 AT2G03710.2 75.862 87 20 1 35 120 1 87 2.78e-40 137
Msa1213120 AT2G03710.1 75.862 87 20 1 35 120 1 87 2.85e-40 137
Msa1213120 AT1G69120.2 60.577 104 40 1 35 138 1 103 2.25e-38 132
Msa1213120 AT1G69120.1 60.577 104 40 1 35 138 1 103 8.72e-38 131
Msa1213120 AT1G26310.1 71.084 83 24 0 35 117 1 83 1.08e-36 128
Msa1213120 AT5G60910.1 70.130 77 23 0 35 111 1 77 1.01e-35 125
Msa1213120 AT2G45650.1 68.966 87 26 1 35 121 1 86 3.69e-34 122
Msa1213120 AT4G11880.2 67.857 84 26 1 37 120 3 85 2.35e-32 115
Msa1213120 AT4G11880.3 67.857 84 26 1 37 120 3 85 2.35e-32 115
Msa1213120 AT5G62165.14 55.000 100 44 1 37 136 3 101 6.30e-32 111
Msa1213120 AT4G11880.4 67.857 84 26 1 37 120 3 85 7.55e-32 115
Msa1213120 AT4G11880.1 67.857 84 26 1 37 120 3 85 7.55e-32 115
Msa1213120 AT5G62165.17 55.789 95 41 1 37 131 3 96 1.04e-31 112
Msa1213120 AT5G62165.12 55.789 95 41 1 37 131 3 96 1.04e-31 112
Msa1213120 AT5G62165.11 55.789 95 41 1 37 131 3 96 1.04e-31 112
Msa1213120 AT5G62165.6 55.789 95 41 1 37 131 3 96 1.25e-31 112
Msa1213120 AT5G62165.9 55.789 95 41 1 37 131 3 96 1.25e-31 112
Msa1213120 AT5G62165.7 55.789 95 41 1 37 131 3 96 1.25e-31 112
Msa1213120 AT5G62165.8 55.789 95 41 1 37 131 3 96 1.25e-31 112
Msa1213120 AT5G62165.13 55.789 95 41 1 37 131 3 96 1.25e-31 112
Msa1213120 AT2G42830.1 68.831 77 23 1 30 106 11 86 5.69e-31 113
Msa1213120 AT2G42830.2 68.831 77 23 1 30 106 11 86 5.83e-31 113
Msa1213120 AT5G62165.10 69.444 72 21 1 37 108 3 73 7.36e-31 111
Msa1213120 AT5G62165.4 69.444 72 21 1 37 108 3 73 7.36e-31 111
Msa1213120 AT5G62165.3 69.444 72 21 1 37 108 3 73 8.85e-31 112
Msa1213120 AT5G62165.1 69.444 72 21 1 37 108 3 73 8.85e-31 112
Msa1213120 AT5G62165.2 69.444 72 21 1 37 108 3 73 8.85e-31 112
Msa1213120 AT3G61120.1 64.045 89 26 2 35 123 1 83 1.32e-30 112
Msa1213120 AT4G18960.1 65.116 86 23 2 21 106 9 87 1.76e-30 112
Msa1213120 AT3G58780.1 67.532 77 24 1 30 106 11 86 2.14e-30 112
Msa1213120 AT3G58780.5 67.532 77 24 1 30 106 17 92 2.32e-30 112
Msa1213120 AT3G30260.1 53.000 100 47 0 35 134 1 100 4.71e-30 111
Msa1213120 AT3G58780.4 67.532 77 24 1 30 106 11 86 5.67e-30 111
Msa1213120 AT4G09960.2 68.056 72 22 1 35 106 1 71 1.30e-29 109
Msa1213120 AT4G09960.1 68.056 72 22 1 35 106 1 71 1.83e-29 108
Msa1213120 AT4G09960.6 68.056 72 22 1 35 106 2 72 1.96e-29 108
Msa1213120 AT4G09960.3 65.333 75 25 1 32 106 24 97 1.99e-29 109
Msa1213120 AT3G58780.3 68.493 73 23 0 30 102 11 83 2.65e-29 109
Msa1213120 AT4G09960.5 68.056 72 22 1 35 106 11 81 2.70e-29 108
Msa1213120 AT4G22950.2 53.509 114 47 4 37 150 3 110 4.65e-29 106
Msa1213120 AT4G09960.4 67.123 73 23 1 34 106 95 166 9.14e-29 109
Msa1213120 AT2G45660.2 44.628 121 62 2 37 157 3 118 1.46e-28 104
Msa1213120 AT4G22950.3 55.238 105 44 3 37 141 3 104 1.53e-28 106
Msa1213120 AT4G22950.1 55.238 105 44 3 37 141 3 104 1.53e-28 106
Msa1213120 AT3G58780.2 74.603 63 16 0 30 92 11 73 2.02e-28 106
Msa1213120 AT2G45660.1 44.628 121 62 2 37 157 3 118 3.67e-28 105
Msa1213120 AT3G57390.3 67.143 70 22 1 35 104 1 69 3.76e-27 103
Msa1213120 AT3G57390.1 67.143 70 22 1 35 104 1 69 7.30e-27 103
Msa1213120 AT5G13790.2 50.000 116 54 3 35 150 1 112 1.44e-26 102
Msa1213120 AT5G13790.1 50.862 116 50 4 35 150 1 109 1.48e-26 102
Msa1213120 AT3G57230.2 53.488 86 39 1 35 120 1 85 3.32e-26 98.2
Msa1213120 AT3G57230.1 53.488 86 39 1 35 120 1 85 3.77e-25 98.2
Msa1213120 AT3G57230.4 53.488 86 39 1 35 120 1 85 3.77e-25 98.2
Msa1213120 AT5G65070.4 45.763 118 55 3 35 146 1 115 5.58e-25 95.1
Msa1213120 AT5G10140.4 55.000 80 36 0 35 114 1 80 8.91e-25 95.9
Msa1213120 AT5G10140.2 55.000 80 36 0 35 114 1 80 9.22e-25 95.1
Msa1213120 AT5G65070.1 46.154 117 54 3 35 145 1 114 9.22e-25 96.3
Msa1213120 AT5G10140.1 55.000 80 36 0 35 114 1 80 9.24e-25 95.9
Msa1213120 AT2G14210.1 56.944 72 31 0 35 106 1 72 9.88e-25 97.1
Msa1213120 AT2G14210.2 56.944 72 31 0 35 106 1 72 1.46e-24 96.7
Msa1213120 AT5G10140.3 55.000 80 36 0 35 114 1 80 2.31e-24 94.7
Msa1213120 AT4G37940.3 48.276 87 44 1 35 121 1 86 2.92e-24 94.4
Msa1213120 AT2G22540.3 48.598 107 51 2 35 141 1 103 3.28e-24 95.9
Msa1213120 AT2G22540.1 48.598 107 51 2 35 141 1 103 3.28e-24 95.9
Msa1213120 AT5G51870.5 43.443 122 65 2 29 150 18 135 5.58e-24 94.0
Msa1213120 AT5G51870.2 44.737 114 59 2 37 150 3 112 5.78e-24 93.2
Msa1213120 AT4G37940.4 48.276 87 44 1 35 121 1 86 8.19e-24 94.0
Msa1213120 AT5G51870.1 45.614 114 58 2 37 150 3 112 8.50e-24 94.0
Msa1213120 AT1G71692.1 56.944 72 31 0 35 106 1 72 8.81e-24 94.0
Msa1213120 AT4G37940.1 48.276 87 44 1 35 121 1 86 9.22e-24 94.4
Msa1213120 AT5G65070.2 55.000 80 36 0 35 114 1 80 1.33e-23 94.0
Msa1213120 AT5G65070.5 55.000 80 36 0 35 114 1 80 1.35e-23 93.2
Msa1213120 AT5G51870.4 44.737 114 59 2 37 150 3 112 2.13e-23 93.2
Msa1213120 AT5G51870.3 44.737 114 59 2 37 150 13 122 2.88e-23 92.8
Msa1213120 AT5G65050.2 44.068 118 63 2 35 149 1 118 3.18e-23 91.7
Msa1213120 AT5G65050.1 44.068 118 63 2 35 149 1 118 3.69e-23 91.7
Msa1213120 AT5G51860.2 57.746 71 29 1 37 107 3 72 3.70e-23 92.0
Msa1213120 AT2G22630.1 48.276 87 44 1 35 121 1 86 5.10e-23 92.4
Msa1213120 AT2G22630.2 48.276 87 44 1 35 121 1 86 5.10e-23 92.4
Msa1213120 AT5G65050.3 44.068 118 63 2 35 149 1 118 5.26e-23 91.7
Msa1213120 AT5G51860.1 57.746 71 29 1 37 107 3 72 5.45e-23 91.7
Msa1213120 AT5G20240.2 46.465 99 52 1 35 132 1 99 2.39e-22 88.6
Msa1213120 AT5G65050.5 47.126 87 46 0 35 121 1 87 3.21e-22 89.0
Msa1213120 AT5G20240.1 46.465 99 52 1 35 132 1 99 3.73e-22 89.7
Msa1213120 AT3G54340.1 38.889 108 62 2 35 139 1 107 2.76e-21 87.8
Msa1213120 AT5G65080.3 52.500 80 38 0 35 114 8 87 4.22e-21 86.3
Msa1213120 AT5G23260.4 50.000 86 39 1 16 101 2 83 7.54e-21 87.4
Msa1213120 AT5G23260.1 50.000 86 39 1 16 101 2 83 7.96e-21 87.4
Msa1213120 AT4G24540.1 56.579 76 32 1 35 110 1 75 9.63e-21 86.3
Msa1213120 AT5G65060.1 39.683 126 57 3 35 149 1 118 1.23e-20 85.1
Msa1213120 AT2G22540.2 44.860 107 50 2 35 141 1 98 1.33e-20 86.3
Msa1213120 AT5G65060.3 39.683 126 57 3 35 149 1 118 1.63e-20 84.7
Msa1213120 AT5G65070.3 43.590 117 53 3 35 144 1 111 1.86e-20 85.5
Msa1213120 AT5G23260.3 56.716 67 29 0 35 101 1 67 4.40e-20 84.7
Msa1213120 AT1G77980.1 50.633 79 39 0 35 113 1 79 5.23e-20 86.3
Msa1213120 AT5G23260.2 56.716 67 29 0 35 101 1 67 5.42e-20 84.7
Msa1213120 AT5G65060.2 46.250 80 43 0 35 114 1 80 7.94e-20 82.8
Msa1213120 AT1G22130.1 63.793 58 21 0 35 92 1 58 1.97e-19 84.7
Msa1213120 AT5G65080.2 64.407 59 21 0 35 93 8 66 1.27e-18 80.1
Msa1213120 AT1G31140.2 56.923 65 28 0 37 101 3 67 1.41e-18 80.1
Msa1213120 AT1G31140.1 56.923 65 28 0 37 101 3 67 1.56e-18 80.1
Msa1213120 AT1G77950.3 50.000 70 35 0 35 104 1 70 1.91e-17 77.8
Msa1213120 AT1G77950.2 50.000 70 35 0 35 104 1 70 1.91e-17 77.8
Msa1213120 AT1G77950.1 50.000 70 35 0 35 104 1 70 1.91e-17 77.8
Msa1213120 AT1G77950.4 50.000 70 35 0 35 104 1 70 1.91e-17 77.8
Msa1213120 AT1G77080.5 41.270 126 55 3 35 149 1 118 2.42e-17 76.3
Msa1213120 AT1G77080.11 41.270 126 55 3 35 149 1 118 2.66e-17 75.9
Msa1213120 AT1G77080.4 41.270 126 55 3 35 149 1 118 4.06e-17 75.9
Msa1213120 AT4G37435.1 35.185 108 67 1 35 142 1 105 6.11e-16 72.8
Msa1213120 AT1G77080.8 48.718 78 40 0 35 112 1 78 1.36e-15 72.4
Msa1213120 AT1G77080.12 43.089 123 53 4 35 149 1 114 1.50e-15 70.9
Msa1213120 AT1G18750.4 42.308 78 44 1 35 111 1 78 2.32e-15 73.6
Msa1213120 AT1G18750.1 42.308 78 44 1 35 111 1 78 2.56e-15 73.6
Msa1213120 AT1G77080.2 43.089 123 53 4 35 149 1 114 2.73e-15 71.2
Msa1213120 AT1G01530.1 54.386 57 26 0 35 91 6 62 3.05e-15 72.0
Msa1213120 AT1G18750.3 42.308 78 44 1 35 111 1 78 3.60e-15 73.2
Msa1213120 AT2G03060.3 43.590 78 43 1 35 111 1 78 7.94e-14 69.3
Msa1213120 AT2G03060.7 43.590 78 43 1 35 111 1 78 7.94e-14 69.3
Msa1213120 AT2G03060.1 43.590 78 43 1 35 111 1 78 7.94e-14 69.3
Msa1213120 AT2G03060.2 43.590 78 43 1 35 111 1 78 1.02e-13 68.9
Msa1213120 AT1G72350.1 44.928 69 35 1 36 104 43 108 1.88e-13 66.6
Msa1213120 AT4G36590.1 46.575 73 35 1 36 108 7 75 1.93e-13 67.0
Msa1213120 AT1G65360.1 46.667 60 32 0 32 91 3 62 2.73e-13 66.2
Msa1213120 AT5G60440.1 48.333 60 31 0 32 91 3 62 1.84e-12 64.7
Msa1213120 AT3G04100.1 46.875 64 33 1 32 95 11 73 2.68e-12 63.2
Msa1213120 AT1G69540.1 49.057 53 27 0 35 87 1 53 4.60e-12 63.9
Msa1213120 AT1G69540.2 49.057 53 27 0 35 87 1 53 5.84e-12 63.9
Msa1213120 AT1G29962.1 51.562 64 30 1 32 95 5 67 7.39e-12 61.6
Msa1213120 AT3G66656.1 43.860 57 32 0 35 91 1 57 1.82e-11 60.5
Msa1213120 AT2G34440.1 42.105 57 33 0 35 91 1 57 1.90e-11 60.5
Msa1213120 AT2G24840.1 47.368 57 30 0 35 91 62 118 2.61e-11 61.2
Msa1213120 AT1G47760.1 48.980 49 25 0 35 83 1 49 3.26e-11 60.1
Msa1213120 AT1G28460.1 50.000 64 31 1 32 95 5 67 7.22e-11 58.9

Find 68 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTCTTTATAATCTTTA+TGG 0.069047 8_1:-73187852 None:intergenic
GATGAGAATGCTTTCTTAAA+TGG 0.191603 8_1:-73182154 None:intergenic
GTGAATTCCAACTTGCAAAT+TGG 0.221680 8_1:+73187200 Msa1213120:CDS
TCCCACTTGTTCATCTTATA+AGG 0.258432 8_1:-73187593 None:intergenic
ACCTGGAACTTGTAAGTTAT+CGG 0.301270 8_1:-73187078 None:intergenic
ACAAGTTCCAGGTAGAATAT+TGG 0.334594 8_1:+73187088 Msa1213120:CDS
AACATTTACCAGAGTATCAT+TGG 0.339966 8_1:-73185228 None:intergenic
TGAATTCCAACTTGCAAATT+GGG 0.345860 8_1:+73187201 Msa1213120:CDS
GCAACGTTAATTGTTGGTTC+AGG 0.354685 8_1:-73187952 None:intergenic
TTCATAGAGTTTGCCACGGT+TGG 0.385936 8_1:-73182387 None:intergenic
TCCAGGTAGAATATTGGCTT+TGG 0.396800 8_1:+73187094 Msa1213120:CDS
AGAATATTGGCTTTGGAAGC+TGG 0.410498 8_1:+73187101 Msa1213120:CDS
AGGAGGAGGAGGAGAAGGAA+AGG 0.416302 8_1:-73187147 None:intergenic
ACCGATAACTTACAAGTTCC+AGG 0.417009 8_1:+73187077 Msa1213120:CDS
GAATATGCAACGTTAATTGT+TGG 0.418239 8_1:-73187958 None:intergenic
AGATGAACAAGTGGGATGTC+CGG 0.424317 8_1:+73187600 Msa1213120:three_prime_UTR
ACTTTACCCAATTTGCAAGT+TGG 0.437659 8_1:-73187207 None:intergenic
CAAGTACAGTTATAATGAAC+TGG 0.445526 8_1:+73185190 Msa1213120:CDS
CCAGAGTATCATTGGCTGGT+TGG 0.458073 8_1:-73185220 None:intergenic
GACAATGCGTTATTATATGC+GGG 0.462809 8_1:-73187641 None:intergenic
AGTATCATTGGCTGGTTGGT+TGG 0.465819 8_1:-73185216 None:intergenic
GATGAACAAGTGGGATGTCC+GGG 0.467032 8_1:+73187601 Msa1213120:three_prime_UTR
GGAGGAGGAGGAGAAGGAAA+GGG 0.474867 8_1:-73187146 None:intergenic
GGGCTGTGGGGTTCGAACCC+CGG 0.475888 8_1:-73187619 None:intergenic
AACCTATCTGATTGAGGAGG+AGG 0.495232 8_1:-73187161 None:intergenic
GCGTCATCCTTGAGAATGAA+TGG 0.496440 8_1:+73187783 Msa1213120:three_prime_UTR
GCCATATTAACATGAAAAGA+AGG 0.506089 8_1:-73187690 None:intergenic
TTTACCAGAGTATCATTGGC+TGG 0.506248 8_1:-73185224 None:intergenic
TTAACCAATACAGAAAAGCT+AGG 0.509865 8_1:+73182179 Msa1213120:CDS
AAATAACGATCTGAGAAGTA+AGG 0.522802 8_1:+73186547 Msa1213120:CDS
ATTAACATGAAAAGAAGGTC+CGG 0.526584 8_1:-73187685 None:intergenic
GAGAAGGAAAGGGTGCATGA+TGG 0.528427 8_1:-73187136 None:intergenic
AAGCTAGGGAGTTCTACTCC+AGG 0.539620 8_1:+73182194 Msa1213120:CDS
CTATCTGATTGAGGAGGAGG+AGG 0.540160 8_1:-73187158 None:intergenic
TATATGCAGCTACAATCCGA+TGG 0.541973 8_1:+73187737 Msa1213120:three_prime_UTR
ATGAATTCAGTAGCACCTCC+TGG 0.543725 8_1:+73182405 Msa1213120:CDS
CTCCTCCTCCTCAATCAGAT+AGG 0.544066 8_1:+73187159 Msa1213120:CDS
AAGAAATGGTGTACTCAAGA+AGG 0.552744 8_1:+73182313 Msa1213120:CDS
GTTCATTATAACTGTACTTG+TGG 0.559243 8_1:-73185187 None:intergenic
CCAACCAGCCAATGATACTC+TGG 0.559471 8_1:+73185220 Msa1213120:CDS
ATATAGCATGATGAAAACAT+TGG 0.571729 8_1:+73185157 Msa1213120:intron
CACCTTATAAGATGAACAAG+TGG 0.572780 8_1:+73187591 Msa1213120:three_prime_UTR
GTCGAATCCATTCATTCTCA+AGG 0.575307 8_1:-73187790 None:intergenic
TCCGGTGAGCATAAATCAGT+TGG 0.578117 8_1:-73187667 None:intergenic
ACCAACTGATTTATGCTCAC+CGG 0.580411 8_1:+73187666 Msa1213120:three_prime_UTR
TCCAAAGCCAATATTCTACC+TGG 0.581815 8_1:-73187095 None:intergenic
CTTATCATCTTCTCCAACCG+TGG 0.584619 8_1:+73182374 Msa1213120:CDS
ATATGCAGCTACAATCCGAT+GGG 0.586179 8_1:+73187738 Msa1213120:three_prime_UTR
TGGAGAAACCTATCTGATTG+AGG 0.593462 8_1:-73187167 None:intergenic
TAACCAATACAGAAAAGCTA+GGG 0.599889 8_1:+73182180 Msa1213120:CDS
AGCTAGGGAGTTCTACTCCA+GGG 0.617312 8_1:+73182195 Msa1213120:CDS
GGACAATGCGTTATTATATG+CGG 0.620310 8_1:-73187642 None:intergenic
GTGAGCATAAATCAGTTGGT+AGG 0.621503 8_1:-73187663 None:intergenic
ACCTTATAAGATGAACAAGT+GGG 0.627055 8_1:+73187592 Msa1213120:three_prime_UTR
TTTACATCAGCAGAACCCAT+CGG 0.640734 8_1:-73187753 None:intergenic
ATATTGGCTTTGGAAGCTGG+TGG 0.647036 8_1:+73187104 Msa1213120:CDS
CAATGCGTTATTATATGCGG+GGG 0.653941 8_1:-73187639 None:intergenic
GATAGGTTTCTCCACCATGT+GGG 0.657071 8_1:+73187176 Msa1213120:CDS
AGATAGGTTTCTCCACCATG+TGG 0.660803 8_1:+73187175 Msa1213120:CDS
ACAATGCGTTATTATATGCG+GGG 0.661595 8_1:-73187640 None:intergenic
TAAGGTGAATTCTAGCCACT+AGG 0.661931 8_1:-73187575 None:intergenic
TGAATTCATAGAGTTTGCCA+CGG 0.664927 8_1:-73182391 None:intergenic
GGTTCTGCTGATGTAAACGT+TGG 0.678229 8_1:+73187759 Msa1213120:three_prime_UTR
ATGAACAAGTGGGATGTCCG+GGG 0.679928 8_1:+73187602 Msa1213120:three_prime_UTR
AGTTGGAATTCACTCCCACA+TGG 0.680115 8_1:-73187190 None:intergenic
TGGAATTCACTCCCACATGG+TGG 0.684600 8_1:-73187187 None:intergenic
AGAAACCTATCTGATTGAGG+AGG 0.689173 8_1:-73187164 None:intergenic
ATGGATTCGACGCTATGACG+TGG 0.697285 8_1:+73187802 Msa1213120:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAATATTTATTAACTTG+AGG - chr8_1:73182697-73182716 None:intergenic 10.0%
!! TATTCATACATATATATATT+TGG - chr8_1:73182880-73182899 None:intergenic 10.0%
!!! CAATAGTTTTTTTTTTTTTT+TGG - chr8_1:73183870-73183889 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAACTAT+TGG + chr8_1:73183868-73183887 Msa1213120:intron 10.0%
!!! TTTTATCTTAGTAAAAAATA+TGG + chr8_1:73184211-73184230 Msa1213120:intron 10.0%
!!! TATAAATTAATTTAGTTTTG+AGG + chr8_1:73184865-73184884 Msa1213120:intron 10.0%
!! AAAGTAATTAAAAAACTAAA+TGG + chr8_1:73185836-73185855 Msa1213120:intron 10.0%
!!! AAAATAGTTATTTCATTTTT+TGG + chr8_1:73186064-73186083 Msa1213120:intron 10.0%
!! TTGTAAAAAGAAAAAAAAAA+AGG - chr8_1:73186468-73186487 None:intergenic 10.0%
!! AATGTTTACATAAATAAAAA+TGG + chr8_1:73187906-73187925 Msa1213120:three_prime_UTR 10.0%
!!! ATTTATTTTTTCACAAACAA+AGG + chr8_1:73182720-73182739 Msa1213120:intron 15.0%
!!! TTTATTTTTTCACAAACAAA+GGG + chr8_1:73182721-73182740 Msa1213120:intron 15.0%
!! TGTTAAAAACATGTTTAAAT+TGG + chr8_1:73183212-73183231 Msa1213120:intron 15.0%
!! GTTAAAAACATGTTTAAATT+GGG + chr8_1:73183213-73183232 Msa1213120:intron 15.0%
!!! GTAATTTTGTTTTTGAATTT+TGG + chr8_1:73183286-73183305 Msa1213120:intron 15.0%
!!! GCAATTAATGTTTTATTTTT+TGG - chr8_1:73183584-73183603 None:intergenic 15.0%
!!! TAAGCAAAAAACAATTTTTT+AGG + chr8_1:73183920-73183939 Msa1213120:intron 15.0%
!! AATGATAACATATAAAATGT+AGG - chr8_1:73184186-73184205 None:intergenic 15.0%
!! TGTTATGAGAATAATATATA+TGG + chr8_1:73184242-73184261 Msa1213120:intron 15.0%
!!! TAAAAATTGAAGTATTAGTT+TGG - chr8_1:73184751-73184770 None:intergenic 15.0%
!!! AATTTTTAAGTAGAAGTTTA+TGG + chr8_1:73184763-73184782 Msa1213120:intron 15.0%
!! AAACTAATTAATTTAGCAAA+TGG - chr8_1:73185908-73185927 None:intergenic 15.0%
!!! CAAGTTTTTTTTATACAATT+TGG + chr8_1:73185995-73186014 Msa1213120:intron 15.0%
!! AGTAAAAAAAAGAAGAATAT+TGG - chr8_1:73186360-73186379 None:intergenic 15.0%
!!! TTAAAAAAATCTTATTTGCT+TGG + chr8_1:73186712-73186731 Msa1213120:intron 15.0%
!!! TCAATTTAAAAGTTTGTTTT+AGG - chr8_1:73186801-73186820 None:intergenic 15.0%
!! AATACATGAATGAAAAATTA+TGG + chr8_1:73186838-73186857 Msa1213120:intron 15.0%
!!! TTTTTACCAAATATAGTATA+AGG + chr8_1:73187259-73187278 Msa1213120:intron 15.0%
!! ATAAAACCTTATACTATATT+TGG - chr8_1:73187268-73187287 None:intergenic 15.0%
!!! AAACGTTTTTAATGATTTAA+CGG + chr8_1:73187401-73187420 Msa1213120:intron 15.0%
!! CAATTTCTTTATAATCTTTA+TGG - chr8_1:73187855-73187874 None:intergenic 15.0%
!! ACACATAATTAGATACATAA+AGG - chr8_1:73182453-73182472 None:intergenic 20.0%
!!! ATCTAATTATGTGTTTCTTT+TGG + chr8_1:73182459-73182478 Msa1213120:intron 20.0%
!! TGTCATATTTATTTACCTAT+GGG - chr8_1:73182579-73182598 None:intergenic 20.0%
!! TTGTCATATTTATTTACCTA+TGG - chr8_1:73182580-73182599 None:intergenic 20.0%
!! ATCTTAACTATATGTTTGAT+CGG - chr8_1:73182635-73182654 None:intergenic 20.0%
!! AATTGAAAACAACTATTTAC+AGG + chr8_1:73182760-73182779 Msa1213120:intron 20.0%
!! ATATATATTTGGAGACAAAA+TGG - chr8_1:73182869-73182888 None:intergenic 20.0%
!! ATATTTCCAGAATGTAAAAA+AGG + chr8_1:73183154-73183173 Msa1213120:intron 20.0%
!! TATTTCCAGAATGTAAAAAA+GGG + chr8_1:73183155-73183174 Msa1213120:intron 20.0%
!! TATATATCTGATGATTGTTA+GGG - chr8_1:73183265-73183284 None:intergenic 20.0%
!! ATATATATCTGATGATTGTT+AGG - chr8_1:73183266-73183285 None:intergenic 20.0%
!! TTCCATATTTGATTCATTAA+GGG - chr8_1:73183666-73183685 None:intergenic 20.0%
!! TTTCCATATTTGATTCATTA+AGG - chr8_1:73183667-73183686 None:intergenic 20.0%
!! TAATGAATCAAATATGGAAA+TGG + chr8_1:73183667-73183686 Msa1213120:intron 20.0%
!!! TTTTTACTTATAAATGTGAC+CGG + chr8_1:73184022-73184041 Msa1213120:intron 20.0%
!!! ATTTTATTAAATACTCCATC+CGG - chr8_1:73184044-73184063 None:intergenic 20.0%
!!! TATTTTTTTTCTCTCTTTCA+AGG - chr8_1:73184411-73184430 None:intergenic 20.0%
!! TACAAAAATATATAACCTTG+AGG - chr8_1:73184596-73184615 None:intergenic 20.0%
!! ATAAAAGAGGAAAATAATCA+TGG - chr8_1:73184647-73184666 None:intergenic 20.0%
!!! ATGATTATTTTCCTCTTTTA+TGG + chr8_1:73184646-73184665 Msa1213120:intron 20.0%
!!! TTTTTATAAGCAAAACATAG+GGG - chr8_1:73185007-73185026 None:intergenic 20.0%
!!! GTTTTTATAAGCAAAACATA+GGG - chr8_1:73185008-73185027 None:intergenic 20.0%
!!! TGTTTTTATAAGCAAAACAT+AGG - chr8_1:73185009-73185028 None:intergenic 20.0%
!!! TCAATGATATTGATTTCTAA+GGG - chr8_1:73185113-73185132 None:intergenic 20.0%
!!! ATCAATGATATTGATTTCTA+AGG - chr8_1:73185114-73185133 None:intergenic 20.0%
!! TAAGTAATAACTAATTTGAG+TGG + chr8_1:73185503-73185522 Msa1213120:intron 20.0%
!!! TATGTTTTCCATTGAAATTT+AGG + chr8_1:73186601-73186620 Msa1213120:intron 20.0%
!!! TGTCACTTTTTAATACTATT+TGG + chr8_1:73186895-73186914 Msa1213120:intron 20.0%
!! TAAATAATGTCATACTGATA+GGG - chr8_1:73186951-73186970 None:intergenic 20.0%
!! TTAAATAATGTCATACTGAT+AGG - chr8_1:73186952-73186971 None:intergenic 20.0%
!!! ACATTATTTAAGACTATGTT+TGG + chr8_1:73186961-73186980 Msa1213120:intron 20.0%
!!! CATTATTTAAGACTATGTTT+GGG + chr8_1:73186962-73186981 Msa1213120:intron 20.0%
! AGAGAGAACAAAACAAAAAT+AGG + chr8_1:73182224-73182243 Msa1213120:CDS 25.0%
! AACAAAACAAAAATAGGAAG+AGG + chr8_1:73182230-73182249 Msa1213120:CDS 25.0%
! ACAAAACAAAAATAGGAAGA+GGG + chr8_1:73182231-73182250 Msa1213120:CDS 25.0%
!! AATTATGTGTTTCTTTTGGT+TGG + chr8_1:73182463-73182482 Msa1213120:intron 25.0%
! TCTTAACTATATGTTTGATC+GGG - chr8_1:73182634-73182653 None:intergenic 25.0%
! CTTTACACTTTAAACAAATC+TGG - chr8_1:73182918-73182937 None:intergenic 25.0%
!!! TTTTACCCTTTTTTACATTC+TGG - chr8_1:73183163-73183182 None:intergenic 25.0%
! TTGTATTGTATTATGTACGT+AGG - chr8_1:73183312-73183331 None:intergenic 25.0%
!! ATATAGAGTATTAACAGACT+AGG + chr8_1:73183346-73183365 Msa1213120:intron 25.0%
! TATCCTTAGTTAAAACTGTA+CGG + chr8_1:73183530-73183549 Msa1213120:intron 25.0%
! AGAAACATGTTATTGAAGAA+GGG + chr8_1:73183625-73183644 Msa1213120:intron 25.0%
! CAAATATGGAAATGGTTTAT+TGG + chr8_1:73183675-73183694 Msa1213120:intron 25.0%
!! AAACAATCGTTTTCTATAAC+GGG - chr8_1:73183818-73183837 None:intergenic 25.0%
!! CAAACAATCGTTTTCTATAA+CGG - chr8_1:73183819-73183838 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr8_1:73183910-73183929 None:intergenic 25.0%
! ATGTATCTGGTCATAATTAT+AGG - chr8_1:73183971-73183990 None:intergenic 25.0%
! CATTCAATAACTAATGTATC+TGG - chr8_1:73183984-73184003 None:intergenic 25.0%
! AATAATCGACTAAATCACTT+CGG - chr8_1:73184072-73184091 None:intergenic 25.0%
!!! ATAATAAGTTGATGATGTGA+CGG + chr8_1:73184437-73184456 Msa1213120:intron 25.0%
! ATAAGCGAAAAACTTTATTG+AGG + chr8_1:73184543-73184562 Msa1213120:intron 25.0%
!!! ATCATGGTTTTATATTGTGT+GGG - chr8_1:73184631-73184650 None:intergenic 25.0%
!!! AATCATGGTTTTATATTGTG+TGG - chr8_1:73184632-73184651 None:intergenic 25.0%
!! ATTATTTTCCTCTTTTATGG+AGG + chr8_1:73184649-73184668 Msa1213120:intron 25.0%
! TTACACAACTGAAATGATTA+GGG - chr8_1:73184942-73184961 None:intergenic 25.0%
! ATTACACAACTGAAATGATT+AGG - chr8_1:73184943-73184962 None:intergenic 25.0%
! AACATGTAAATAGAAGTTCA+TGG - chr8_1:73184977-73184996 None:intergenic 25.0%
! ATGAACTTCTATTTACATGT+TGG + chr8_1:73184976-73184995 Msa1213120:intron 25.0%
!! TTTTATAAGCAAAACATAGG+GGG - chr8_1:73185006-73185025 None:intergenic 25.0%
! ATATAGCATGATGAAAACAT+TGG + chr8_1:73185157-73185176 Msa1213120:intron 25.0%
! CTTTCAATCTCAAATATTCT+TGG - chr8_1:73185381-73185400 None:intergenic 25.0%
!! ATTCAAGTGCAATTTTCATT+GGG - chr8_1:73185450-73185469 None:intergenic 25.0%
!! AATTCAAGTGCAATTTTCAT+TGG - chr8_1:73185451-73185470 None:intergenic 25.0%
! GAAATGTTTGTAAATGCTTT+AGG + chr8_1:73185527-73185546 Msa1213120:intron 25.0%
! ACTTAAGAATATAAGATCGA+CGG + chr8_1:73185624-73185643 Msa1213120:intron 25.0%
! TTGCAATCATATTGTATGTA+TGG - chr8_1:73185973-73185992 None:intergenic 25.0%
!! CTCTTTTTACAAATGCTTTT+AGG + chr8_1:73186034-73186053 Msa1213120:intron 25.0%
! ATGTATGTTAAAATGTGTGT+TGG - chr8_1:73186193-73186212 None:intergenic 25.0%
!!! AAAGGTGTTGTTTAAACATT+TGG - chr8_1:73186450-73186469 None:intergenic 25.0%
! GAAAACATATGATCTGTATT+TGG - chr8_1:73186590-73186609 None:intergenic 25.0%
! AACTTGTACCTAAATTTCAA+TGG - chr8_1:73186612-73186631 None:intergenic 25.0%
! ATTGAAATTTAGGTACAAGT+TGG + chr8_1:73186611-73186630 Msa1213120:intron 25.0%
!! GGTTTTTCTTATGGTAATTT+AGG + chr8_1:73186632-73186651 Msa1213120:intron 25.0%
!!! TTGGATTAGTATTCTTACTT+TGG + chr8_1:73186731-73186750 Msa1213120:intron 25.0%
!!! GTTTTAGGTCTATAAACATA+TGG - chr8_1:73186786-73186805 None:intergenic 25.0%
! GTAAGATGAATTCAATACTA+AGG + chr8_1:73186860-73186879 Msa1213120:intron 25.0%
!!! CTTTTCATGTTTTTTTTGTC+AGG + chr8_1:73187549-73187568 Msa1213120:intron 25.0%
!! ACCTTCTTTTCATGTTAATA+TGG + chr8_1:73187689-73187708 Msa1213120:three_prime_UTR 25.0%
GATGAGAATGCTTTCTTAAA+TGG - chr8_1:73182157-73182176 None:intergenic 30.0%
TTAACCAATACAGAAAAGCT+AGG + chr8_1:73182179-73182198 Msa1213120:CDS 30.0%
TAACCAATACAGAAAAGCTA+GGG + chr8_1:73182180-73182199 Msa1213120:CDS 30.0%
! ACTTTTGCTAAGAGAAGAAA+TGG + chr8_1:73182299-73182318 Msa1213120:CDS 30.0%
!! TTTCTTTTGGTTGGAATATG+TGG + chr8_1:73182472-73182491 Msa1213120:intron 30.0%
TTAACAACATATGCAAGCTT+TGG + chr8_1:73182833-73182852 Msa1213120:intron 30.0%
AAAAAATCCACTTTGACAAG+AGG - chr8_1:73183054-73183073 None:intergenic 30.0%
!!! TGCTGCTTTTATTTCAAGAT+AGG + chr8_1:73183111-73183130 Msa1213120:intron 30.0%
TTCAAGATAGGTTCTTAACT+AGG + chr8_1:73183123-73183142 Msa1213120:intron 30.0%
TCAAGATAGGTTCTTAACTA+GGG + chr8_1:73183124-73183143 Msa1213120:intron 30.0%
TTTGCATTGCAATTTAAGGA+TGG + chr8_1:73183439-73183458 Msa1213120:intron 30.0%
!! GATGTTGATTTACACTTTAC+AGG - chr8_1:73183510-73183529 None:intergenic 30.0%
ATCCTTAGTTAAAACTGTAC+GGG + chr8_1:73183531-73183550 Msa1213120:intron 30.0%
CAGAAACATGTTATTGAAGA+AGG + chr8_1:73183624-73183643 Msa1213120:intron 30.0%
TGCCCTTAATGAATCAAATA+TGG + chr8_1:73183661-73183680 Msa1213120:intron 30.0%
TTTCTTAACATGTACCCTAA+GGG + chr8_1:73183777-73183796 Msa1213120:intron 30.0%
! ACTTTATTGAGGAGTATAAG+AGG + chr8_1:73184554-73184573 Msa1213120:intron 30.0%
! GGTCTCATCAAAATTTTGAA+CGG - chr8_1:73184730-73184749 None:intergenic 30.0%
!!! TAGTTTTGAGGCACTAATAT+TGG + chr8_1:73184877-73184896 Msa1213120:intron 30.0%
TACACAACTGAAATGATTAG+GGG - chr8_1:73184941-73184960 None:intergenic 30.0%
! AAAGTGTCTAATGTGTTCTA+GGG - chr8_1:73185067-73185086 None:intergenic 30.0%
!! AAAAGTGTCTAATGTGTTCT+AGG - chr8_1:73185068-73185087 None:intergenic 30.0%
! ATTTCTAAGGGAAACAAGAT+GGG - chr8_1:73185101-73185120 None:intergenic 30.0%
TCATCATGCTATATGATACA+AGG - chr8_1:73185151-73185170 None:intergenic 30.0%
GTTCATTATAACTGTACTTG+TGG - chr8_1:73185190-73185209 None:intergenic 30.0%
CAAGTACAGTTATAATGAAC+TGG + chr8_1:73185190-73185209 Msa1213120:CDS 30.0%
! AACATTTACCAGAGTATCAT+TGG - chr8_1:73185231-73185250 None:intergenic 30.0%
AAATCTTACAACGTTCACAA+AGG + chr8_1:73185410-73185429 Msa1213120:intron 30.0%
GATATTGCACAAATGAATAC+AGG + chr8_1:73185565-73185584 Msa1213120:intron 30.0%
TTCAATACACGCTCTTTAAT+CGG + chr8_1:73186215-73186234 Msa1213120:intron 30.0%
!! GAGACTCACATAATTTTGAT+GGG - chr8_1:73186259-73186278 None:intergenic 30.0%
! TGAGACTCACATAATTTTGA+TGG - chr8_1:73186260-73186279 None:intergenic 30.0%
!! CATTGATTTGGTATAAGTCA+AGG - chr8_1:73186504-73186523 None:intergenic 30.0%
AAATAACGATCTGAGAAGTA+AGG + chr8_1:73186547-73186566 Msa1213120:CDS 30.0%
!!! GTACAAGTTGGTTTTTCTTA+TGG + chr8_1:73186623-73186642 Msa1213120:intron 30.0%
TAGTATTCTTACTTTGGACA+TGG + chr8_1:73186737-73186756 Msa1213120:intron 30.0%
TAGGTCTATAAACATATGGT+GGG - chr8_1:73186782-73186801 None:intergenic 30.0%
TTAGGTCTATAAACATATGG+TGG - chr8_1:73186783-73186802 None:intergenic 30.0%
TGAATTCCAACTTGCAAATT+GGG + chr8_1:73187201-73187220 Msa1213120:CDS 30.0%
TACAATAACAACAACAACCA+AGG + chr8_1:73187442-73187461 Msa1213120:intron 30.0%
ACCTTATAAGATGAACAAGT+GGG + chr8_1:73187592-73187611 Msa1213120:three_prime_UTR 30.0%
ATTAACATGAAAAGAAGGTC+CGG - chr8_1:73187688-73187707 None:intergenic 30.0%
GCCATATTAACATGAAAAGA+AGG - chr8_1:73187693-73187712 None:intergenic 30.0%
AAGAAATGGTGTACTCAAGA+AGG + chr8_1:73182313-73182332 Msa1213120:CDS 35.0%
TGAATTCATAGAGTTTGCCA+CGG - chr8_1:73182394-73182413 None:intergenic 35.0%
GATATAAGAGAAGAGTTACC+AGG - chr8_1:73182426-73182445 None:intergenic 35.0%
TTAATTGTGTCCTCTTTCTC+AGG - chr8_1:73182544-73182563 None:intergenic 35.0%
!!! TAATTTTGAGTTCAGCCCAT+AGG + chr8_1:73182561-73182580 Msa1213120:intron 35.0%
AACTATATGTTTGATCGGGA+CGG - chr8_1:73182630-73182649 None:intergenic 35.0%
TCAGATCTTCACAATGTCAT+GGG - chr8_1:73183027-73183046 None:intergenic 35.0%
TTCAGATCTTCACAATGTCA+TGG - chr8_1:73183028-73183047 None:intergenic 35.0%
TAGGAGTTACTGTTGTGATT+TGG + chr8_1:73183370-73183389 Msa1213120:intron 35.0%
TGCAAACGCAAAGTAAAAAC+AGG - chr8_1:73183425-73183444 None:intergenic 35.0%
TGCGTTTGCATTGCAATTTA+AGG + chr8_1:73183435-73183454 Msa1213120:intron 35.0%
!! CCATTTTTCTCTTTCTCTCT+TGG - chr8_1:73183467-73183486 None:intergenic 35.0%
CCAAGAGAGAAAGAGAAAAA+TGG + chr8_1:73183464-73183483 Msa1213120:intron 35.0%
!!! TTCCCGTACAGTTTTAACTA+AGG - chr8_1:73183536-73183555 None:intergenic 35.0%
GTTTCTTAACATGTACCCTA+AGG + chr8_1:73183776-73183795 Msa1213120:intron 35.0%
TACTTATAAATGTGACCGGA+TGG + chr8_1:73184026-73184045 Msa1213120:intron 35.0%
TCAAGGTGTATACACTTACA+AGG - chr8_1:73184394-73184413 None:intergenic 35.0%
! GATTTCTAAGGGAAACAAGA+TGG - chr8_1:73185102-73185121 None:intergenic 35.0%
TGATGTAATAATGTGTCACC+TGG + chr8_1:73185347-73185366 Msa1213120:intron 35.0%
! ATATTCTTGGTAATTCTGCC+AGG - chr8_1:73185368-73185387 None:intergenic 35.0%
CTGCTTACTTTGATCTGTTA+AGG + chr8_1:73185471-73185490 Msa1213120:intron 35.0%
!! AAATGCTTTAGGAACCTTCT+TGG + chr8_1:73185538-73185557 Msa1213120:intron 35.0%
!! AATGCTTTAGGAACCTTCTT+GGG + chr8_1:73185539-73185558 Msa1213120:intron 35.0%
CGAGCAACTTGAAAATCATT+TGG + chr8_1:73185594-73185613 Msa1213120:intron 35.0%
GCAACTTGAAAATCATTTGG+AGG + chr8_1:73185597-73185616 Msa1213120:intron 35.0%
TAAGAATATAAGATCGACGG+AGG + chr8_1:73185627-73185646 Msa1213120:intron 35.0%
AACTCAGTGATCTTCACAAT+CGG + chr8_1:73186135-73186154 Msa1213120:intron 35.0%
TCAATACACGCTCTTTAATC+GGG + chr8_1:73186216-73186235 Msa1213120:intron 35.0%
GACTTATACCAAATCAATGC+AGG + chr8_1:73186505-73186524 Msa1213120:intron 35.0%
TACCAAATCAATGCAGGAAA+CGG + chr8_1:73186511-73186530 Msa1213120:intron 35.0%
ACCTGGAACTTGTAAGTTAT+CGG - chr8_1:73187081-73187100 None:intergenic 35.0%
ACAAGTTCCAGGTAGAATAT+TGG + chr8_1:73187088-73187107 Msa1213120:CDS 35.0%
GTGAATTCCAACTTGCAAAT+TGG + chr8_1:73187200-73187219 Msa1213120:CDS 35.0%
ACTTTACCCAATTTGCAAGT+TGG - chr8_1:73187210-73187229 None:intergenic 35.0%
CACCTTATAAGATGAACAAG+TGG + chr8_1:73187591-73187610 Msa1213120:three_prime_UTR 35.0%
TCCCACTTGTTCATCTTATA+AGG - chr8_1:73187596-73187615 None:intergenic 35.0%
ACAATGCGTTATTATATGCG+GGG - chr8_1:73187643-73187662 None:intergenic 35.0%
GACAATGCGTTATTATATGC+GGG - chr8_1:73187644-73187663 None:intergenic 35.0%
GGACAATGCGTTATTATATG+CGG - chr8_1:73187645-73187664 None:intergenic 35.0%
!! ACTCCCTAGCTTTTCTGTAT+TGG - chr8_1:73182186-73182205 None:intergenic 40.0%
ATAAGAGAAGAGTTACCAGG+AGG - chr8_1:73182423-73182442 None:intergenic 40.0%
ACTGCTGAGAACTCATGTTT+AGG - chr8_1:73182814-73182833 None:intergenic 40.0%
TGAAACTCCTCTTGTCAAAG+TGG + chr8_1:73183044-73183063 Msa1213120:intron 40.0%
! TGATTGTTAGGGCTTGTTCA+TGG - chr8_1:73183254-73183273 None:intergenic 40.0%
GAGTATTAACAGACTAGGCT+AGG + chr8_1:73183351-73183370 Msa1213120:intron 40.0%
!! TTGTGATTTGGTGTCAGAGA+TGG + chr8_1:73183382-73183401 Msa1213120:intron 40.0%
!! TGTGATTTGGTGTCAGAGAT+GGG + chr8_1:73183383-73183402 Msa1213120:intron 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG - chr8_1:73183794-73183813 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG - chr8_1:73183795-73183814 None:intergenic 40.0%
TGGTTAATAACTACTCCCTC+CGG + chr8_1:73183888-73183907 Msa1213120:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr8_1:73183906-73183925 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr8_1:73183907-73183926 None:intergenic 40.0%
! TGCGTACTCGATTTGCAAAA+AGG + chr8_1:73184343-73184362 Msa1213120:intron 40.0%
!! GGAGTATAAGAGGTTCTGAA+CGG + chr8_1:73184564-73184583 Msa1213120:intron 40.0%
ACTTCTCACCTCCATAAAAG+AGG - chr8_1:73184660-73184679 None:intergenic 40.0%
AGGGGTGATTCAATTTGTGT+AGG - chr8_1:73184923-73184942 None:intergenic 40.0%
! TTTACCAGAGTATCATTGGC+TGG - chr8_1:73185227-73185246 None:intergenic 40.0%
!! ATGCTTTAGGAACCTTCTTG+GGG + chr8_1:73185540-73185559 Msa1213120:intron 40.0%
ACTCAGTGATCTTCACAATC+GGG + chr8_1:73186136-73186155 Msa1213120:intron 40.0%
AATCGGGTTAAAATCCACGT+CGG + chr8_1:73186232-73186251 Msa1213120:intron 40.0%
TTTAAACATTTGGCTGCGAC+TGG - chr8_1:73186440-73186459 None:intergenic 40.0%
CATGGACTCTCACTCTTAAA+TGG + chr8_1:73186755-73186774 Msa1213120:intron 40.0%
ACCGATAACTTACAAGTTCC+AGG + chr8_1:73187077-73187096 Msa1213120:CDS 40.0%
!! TCCAGGTAGAATATTGGCTT+TGG + chr8_1:73187094-73187113 Msa1213120:CDS 40.0%
TCCAAAGCCAATATTCTACC+TGG - chr8_1:73187098-73187117 None:intergenic 40.0%
!! AGAATATTGGCTTTGGAAGC+TGG + chr8_1:73187101-73187120 Msa1213120:CDS 40.0%
AGAAACCTATCTGATTGAGG+AGG - chr8_1:73187167-73187186 None:intergenic 40.0%
TGGAGAAACCTATCTGATTG+AGG - chr8_1:73187170-73187189 None:intergenic 40.0%
TAAGGTGAATTCTAGCCACT+AGG - chr8_1:73187578-73187597 None:intergenic 40.0%
CAATGCGTTATTATATGCGG+GGG - chr8_1:73187642-73187661 None:intergenic 40.0%
GTGAGCATAAATCAGTTGGT+AGG - chr8_1:73187666-73187685 None:intergenic 40.0%
! ACCAACTGATTTATGCTCAC+CGG + chr8_1:73187666-73187685 Msa1213120:three_prime_UTR 40.0%
TATATGCAGCTACAATCCGA+TGG + chr8_1:73187737-73187756 Msa1213120:three_prime_UTR 40.0%
ATATGCAGCTACAATCCGAT+GGG + chr8_1:73187738-73187757 Msa1213120:three_prime_UTR 40.0%
TTTACATCAGCAGAACCCAT+CGG - chr8_1:73187756-73187775 None:intergenic 40.0%
GTCGAATCCATTCATTCTCA+AGG - chr8_1:73187793-73187812 None:intergenic 40.0%
CTTATCATCTTCTCCAACCG+TGG + chr8_1:73182374-73182393 Msa1213120:CDS 45.0%
TTCATAGAGTTTGCCACGGT+TGG - chr8_1:73182390-73182409 None:intergenic 45.0%
ATGAATTCAGTAGCACCTCC+TGG + chr8_1:73182405-73182424 Msa1213120:CDS 45.0%
TCCTCTTTCTCAGGAACTAG+AGG - chr8_1:73182535-73182554 None:intergenic 45.0%
ACGCATTCATGCAACTTCGT+TGG - chr8_1:73184328-73184347 None:intergenic 45.0%
!! TAAGAGGTTCTGAACGGAGA+AGG + chr8_1:73184570-73184589 Msa1213120:intron 45.0%
! GAAACAAGATGGGTTCTGCA+TGG - chr8_1:73185091-73185110 None:intergenic 45.0%
! AGTATCATTGGCTGGTTGGT+TGG - chr8_1:73185219-73185238 None:intergenic 45.0%
GTGCAATATCTTCCCCAAGA+AGG - chr8_1:73185555-73185574 None:intergenic 45.0%
!! TAATTTTGATGGGACCGACG+TGG - chr8_1:73186249-73186268 None:intergenic 45.0%
!! CACCGTTTCCTGCATTGATT+TGG - chr8_1:73186516-73186535 None:intergenic 45.0%
!! ATATTGGCTTTGGAAGCTGG+TGG + chr8_1:73187104-73187123 Msa1213120:CDS 45.0%
AACCTATCTGATTGAGGAGG+AGG - chr8_1:73187164-73187183 None:intergenic 45.0%
AGATAGGTTTCTCCACCATG+TGG + chr8_1:73187175-73187194 Msa1213120:CDS 45.0%
GATAGGTTTCTCCACCATGT+GGG + chr8_1:73187176-73187195 Msa1213120:CDS 45.0%
AGTTGGAATTCACTCCCACA+TGG - chr8_1:73187193-73187212 None:intergenic 45.0%
CAAGGCTTATCCCACTAAGT+GGG + chr8_1:73187460-73187479 Msa1213120:intron 45.0%
AAGGCTTATCCCACTAAGTG+GGG + chr8_1:73187461-73187480 Msa1213120:intron 45.0%
!!! TTTTTTGTCAGGCAGCCTAG+TGG + chr8_1:73187560-73187579 Msa1213120:intron 45.0%
AGATGAACAAGTGGGATGTC+CGG + chr8_1:73187600-73187619 Msa1213120:three_prime_UTR 45.0%
TTATTATATGCGGGGGCTGT+GGG - chr8_1:73187635-73187654 None:intergenic 45.0%
TCCGGTGAGCATAAATCAGT+TGG - chr8_1:73187670-73187689 None:intergenic 45.0%
GGTTCTGCTGATGTAAACGT+TGG + chr8_1:73187759-73187778 Msa1213120:three_prime_UTR 45.0%
GCGTCATCCTTGAGAATGAA+TGG + chr8_1:73187783-73187802 Msa1213120:three_prime_UTR 45.0%
AAGCTAGGGAGTTCTACTCC+AGG + chr8_1:73182194-73182213 Msa1213120:CDS 50.0%
AGCTAGGGAGTTCTACTCCA+GGG + chr8_1:73182195-73182214 Msa1213120:CDS 50.0%
TTGTTCTCTCTCTCTCTCCC+TGG - chr8_1:73182215-73182234 None:intergenic 50.0%
! GCCTCTAGTTCCTGAGAAAG+AGG + chr8_1:73182531-73182550 Msa1213120:intron 50.0%
! CCAGAGTATCATTGGCTGGT+TGG - chr8_1:73185223-73185242 None:intergenic 50.0%
CCAACCAGCCAATGATACTC+TGG + chr8_1:73185220-73185239 Msa1213120:CDS 50.0%
GGTTAACGATATCCTGGTCG+TGG - chr8_1:73186419-73186438 None:intergenic 50.0%
! GCGACTGGTTAACGATATCC+TGG - chr8_1:73186425-73186444 None:intergenic 50.0%
CTATCTGATTGAGGAGGAGG+AGG - chr8_1:73187161-73187180 None:intergenic 50.0%
CTCCTCCTCCTCAATCAGAT+AGG + chr8_1:73187159-73187178 Msa1213120:CDS 50.0%
TGGAATTCACTCCCACATGG+TGG - chr8_1:73187190-73187209 None:intergenic 50.0%
CCACTTAGTGGGATAAGCCT+TGG - chr8_1:73187462-73187481 None:intergenic 50.0%
CCAAGGCTTATCCCACTAAG+TGG + chr8_1:73187459-73187478 Msa1213120:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr8_1:73187465-73187484 Msa1213120:intron 50.0%
GATGAACAAGTGGGATGTCC+GGG + chr8_1:73187601-73187620 Msa1213120:three_prime_UTR 50.0%
ATGAACAAGTGGGATGTCCG+GGG + chr8_1:73187602-73187621 Msa1213120:three_prime_UTR 50.0%
TATTATATGCGGGGGCTGTG+GGG - chr8_1:73187634-73187653 None:intergenic 50.0%
GTTATTATATGCGGGGGCTG+TGG - chr8_1:73187636-73187655 None:intergenic 50.0%
ATGGATTCGACGCTATGACG+TGG + chr8_1:73187802-73187821 Msa1213120:three_prime_UTR 50.0%
TCTGAACGGAGAAGGCCTCA+AGG + chr8_1:73184578-73184597 Msa1213120:intron 55.0%
CGACTATGTAGACCACGACC+AGG + chr8_1:73186404-73186423 Msa1213120:intron 55.0%
GGAGGAGGAGGAGAAGGAAA+GGG - chr8_1:73187149-73187168 None:intergenic 55.0%
AGGAGGAGGAGGAGAAGGAA+AGG - chr8_1:73187150-73187169 None:intergenic 55.0%
GATTGAGGAGGAGGAGGAGA+AGG - chr8_1:73187155-73187174 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr8_1:73187473-73187492 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr8_1:73187474-73187493 None:intergenic 55.0%
GGGCTGTGGGGTTCGAACCC+CGG - chr8_1:73187622-73187641 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 73182140 73187971 73182140 ID=Msa1213120;Name=Msa1213120
chr8_1 mRNA 73182140 73187971 73182140 ID=Msa1213120-mRNA-1;Parent=Msa1213120;Name=Msa1213120-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.75|0.8|1|0.25|0.6|5|385|192
chr8_1 exon 73182140 73182426 73182140 ID=Msa1213120-mRNA-1:exon:24799;Parent=Msa1213120-mRNA-1
chr8_1 exon 73185163 73185241 73185163 ID=Msa1213120-mRNA-1:exon:24800;Parent=Msa1213120-mRNA-1
chr8_1 exon 73186527 73186568 73186527 ID=Msa1213120-mRNA-1:exon:24801;Parent=Msa1213120-mRNA-1
chr8_1 exon 73187068 73187222 73187068 ID=Msa1213120-mRNA-1:exon:24802;Parent=Msa1213120-mRNA-1
chr8_1 exon 73187571 73187971 73187571 ID=Msa1213120-mRNA-1:exon:24803;Parent=Msa1213120-mRNA-1
chr8_1 CDS 73182140 73182426 73182140 ID=Msa1213120-mRNA-1:cds;Parent=Msa1213120-mRNA-1
chr8_1 CDS 73185163 73185241 73185163 ID=Msa1213120-mRNA-1:cds;Parent=Msa1213120-mRNA-1
chr8_1 CDS 73186527 73186568 73186527 ID=Msa1213120-mRNA-1:cds;Parent=Msa1213120-mRNA-1
chr8_1 CDS 73187068 73187222 73187068 ID=Msa1213120-mRNA-1:cds;Parent=Msa1213120-mRNA-1
chr8_1 CDS 73187571 73187586 73187571 ID=Msa1213120-mRNA-1:cds;Parent=Msa1213120-mRNA-1
chr8_1 three_prime_UTR 73187587 73187971 73187587 ID=Msa1213120-mRNA-1:three_prime_utr;Parent=Msa1213120-mRNA-1
Gene Sequence

>Msa1213120

CATAAGAAAATAGACCATTTAAGAAAGCATTCTCATCTCTTAACCAATACAGAAAAGCTAGGGAGTTCTACTCCAGGGAGAGAGAGAGAGAACAAAACAAAAATAGGAAGAGGGAGAGTTGAACTAAAGAGAATAGAGAACAAAATTAATAGACAAGTCACTTTTGCTAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAACCGTGGCAAACTCTATGAATTCAGTAGCACCTCCTGCATGATGAAAACATTGGAGAAATACCACAAGTACAGTTATAATGAACTGGAGACCAACCAACCAGCCAATGATACTCTGGAAACGGTGCTTGTTGAAACAAATAACGATCTGAGAAGTAAGTTAGAAGAAACCGATAACTTACAAGTTCCAGGTAGAATATTGGCTTTGGAAGCTGGTGGATCTAATTTCCATCATGCACCCTTTCCTTCTCCTCCTCCTCCTCAATCAGATAGGTTTCTCCACCATGTGGGAGTGAATTCCAACTTGCAAATTGGGCAGCCTAGTGGCTAG
Protein sequence

>Msa1213120

HKKIDHLRKHSHLLTNTEKLGSSTPGRERENKTKIGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYNELETNQPANDTLETVLVETNNDLRSKLEETDNLQVPGRILALEAGGSNFHHAPFPSPPPPQSDRFLHHVGVNSNLQIGQPSG*