Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214010 | XP_003605159.1 | 97.761 | 268 | 3 | 1 | 1 | 265 | 1 | 268 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214010 | sp|Q8GXF0|RA51C_ARATH | 67.164 | 268 | 80 | 3 | 1 | 265 | 22 | 284 | 3.36e-122 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214010 | G7JFT5 | 97.761 | 268 | 3 | 1 | 1 | 265 | 1 | 268 | 0.0 | 537 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1213930 | Msa1214010 | 0.816814 | 4.554648e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214010 | MtrunA17_Chr4g0011421 | 97.761 | 268 | 3 | 1 | 1 | 265 | 1 | 268 | 0.0 | 537 |
| Msa1214010 | MtrunA17_Chr4g0062441 | 99.474 | 190 | 1 | 0 | 76 | 265 | 1 | 190 | 2.25e-139 | 395 |
| Msa1214010 | MtrunA17_Chr1g0204601 | 32.889 | 225 | 126 | 5 | 54 | 274 | 76 | 279 | 6.96e-24 | 100 |
| Msa1214010 | MtrunA17_Chr4g0069901 | 31.765 | 255 | 139 | 6 | 15 | 265 | 42 | 265 | 1.20e-21 | 93.6 |
| Msa1214010 | MtrunA17_Chr2g0305351 | 30.220 | 182 | 109 | 4 | 87 | 263 | 20 | 188 | 5.27e-17 | 79.7 |
| Msa1214010 | MtrunA17_Chr2g0325901 | 31.319 | 182 | 107 | 4 | 71 | 248 | 83 | 250 | 3.84e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214010 | AT2G45280.1 | 67.164 | 268 | 80 | 3 | 1 | 265 | 22 | 284 | 3.41e-123 | 358 |
| Msa1214010 | AT2G45280.2 | 61.301 | 292 | 81 | 4 | 1 | 265 | 22 | 308 | 2.12e-119 | 349 |
| Msa1214010 | AT3G22880.2 | 31.136 | 273 | 149 | 6 | 8 | 274 | 39 | 278 | 1.86e-26 | 107 |
| Msa1214010 | AT3G22880.1 | 31.136 | 273 | 149 | 6 | 8 | 274 | 39 | 278 | 2.37e-26 | 107 |
| Msa1214010 | AT5G57450.2 | 32.195 | 205 | 120 | 4 | 68 | 265 | 3 | 195 | 7.13e-25 | 102 |
| Msa1214010 | AT5G57450.1 | 32.195 | 205 | 120 | 4 | 68 | 265 | 3 | 195 | 7.13e-25 | 102 |
| Msa1214010 | AT5G20850.2 | 29.412 | 255 | 145 | 6 | 15 | 265 | 43 | 266 | 3.67e-20 | 89.7 |
| Msa1214010 | AT5G20850.1 | 30.196 | 255 | 143 | 7 | 15 | 265 | 43 | 266 | 5.82e-20 | 89.4 |
| Msa1214010 | AT2G28560.4 | 29.670 | 182 | 110 | 4 | 71 | 248 | 33 | 200 | 2.51e-15 | 74.7 |
| Msa1214010 | AT2G28560.3 | 29.670 | 182 | 110 | 4 | 71 | 248 | 33 | 200 | 7.77e-15 | 74.7 |
| Msa1214010 | AT2G28560.6 | 29.670 | 182 | 110 | 4 | 71 | 248 | 65 | 232 | 8.18e-15 | 74.7 |
| Msa1214010 | AT2G28560.5 | 29.670 | 182 | 110 | 4 | 71 | 248 | 65 | 232 | 8.18e-15 | 74.7 |
| Msa1214010 | AT2G28560.2 | 29.670 | 182 | 110 | 4 | 71 | 248 | 65 | 232 | 8.18e-15 | 74.7 |
| Msa1214010 | AT2G28560.1 | 29.670 | 182 | 110 | 4 | 71 | 248 | 65 | 232 | 8.95e-15 | 74.7 |
Find 83 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAGGATAACCAAGCTTT+TGG | 0.263172 | 8_1:-74485935 | Msa1214010:CDS |
| AGATACTGAAGGAAGCTTTA+TGG | 0.268343 | 8_1:-74486023 | Msa1214010:CDS |
| CCGCCAAGACTTTGATGATA+TGG | 0.290126 | 8_1:-74485536 | Msa1214010:CDS |
| ACCTAGGCCACCATAGTCTA+AGG | 0.294287 | 8_1:+74486150 | None:intergenic |
| GGCATCGGTAAAACACAAAT+AGG | 0.294764 | 8_1:-74486308 | Msa1214010:CDS |
| AAACTAGAACTCTATATATT+AGG | 0.301300 | 8_1:-74485279 | Msa1214010:three_prime_UTR |
| GTTCAGATTCCCTTAGACTA+TGG | 0.313027 | 8_1:-74486160 | Msa1214010:CDS |
| TTTGTCCAAATCACTACTTC+TGG | 0.324317 | 8_1:+74487400 | None:intergenic |
| TAGACTTAAAAGTATTCATT+TGG | 0.344087 | 8_1:+74485056 | None:intergenic |
| TGTAACTAGTGTATATATAG+AGG | 0.345483 | 8_1:-74485160 | Msa1214010:intron |
| AATTGCGTTGGTAAATTACT+TGG | 0.346991 | 8_1:-74485843 | Msa1214010:CDS |
| GTACCGCTGATTCCGTCTAT+TGG | 0.347841 | 8_1:-74485309 | Msa1214010:CDS |
| TGCAACCAGAAGTAGTGATT+TGG | 0.352806 | 8_1:-74487405 | Msa1214010:CDS |
| TGCAAAGAAGTGACTGAAAT+TGG | 0.359942 | 8_1:-74486464 | Msa1214010:intron |
| CCTCTCTTTGATGCCGAGAT+TGG | 0.378039 | 8_1:+74487790 | None:intergenic |
| AATTAAGTATTTAGAGCATA+AGG | 0.386210 | 8_1:+74484914 | None:intergenic |
| TACCGCTGATTCCGTCTATT+GGG | 0.394454 | 8_1:-74485308 | Msa1214010:CDS |
| GAACTCTATATATTAGGAAT+TGG | 0.401508 | 8_1:-74485273 | Msa1214010:three_prime_UTR |
| CCCTTAGACTATGGTGGCCT+AGG | 0.427121 | 8_1:-74486151 | Msa1214010:CDS |
| GTGTAGGTGGTCAGACTGCT+TGG | 0.459995 | 8_1:-74486571 | Msa1214010:intron |
| AGTAACACTAATGTTATTCA+TGG | 0.461751 | 8_1:-74487368 | Msa1214010:intron |
| AATGCACCCGAATAGTATCT+TGG | 0.461843 | 8_1:-74485906 | Msa1214010:CDS |
| CTAACTCTAAGTTAGTGAAT+AGG | 0.464821 | 8_1:-74485233 | Msa1214010:three_prime_UTR |
| CATCAAAGTCTTGGCGGAAG+TGG | 0.467042 | 8_1:+74485542 | None:intergenic |
| TTTGGCATGTGGCATTGCTT+AGG | 0.472159 | 8_1:+74485074 | None:intergenic |
| GCATCGGTAAAACACAAATA+GGG | 0.480592 | 8_1:-74486307 | Msa1214010:intron |
| CTTGATCTAGATAACATCCT+TGG | 0.482948 | 8_1:-74486500 | Msa1214010:CDS |
| GCTCTCCGGACTCGATTACT+TGG | 0.488443 | 8_1:-74485514 | Msa1214010:CDS |
| TAACCCTAAATATAAATAGT+TGG | 0.491132 | 8_1:-74487878 | None:intergenic |
| TATTTATTTAGGTGGAGTCC+CGG | 0.493765 | 8_1:-74486330 | Msa1214010:intron |
| AGTTTCTGAGAGTGAAGCAT+TGG | 0.502123 | 8_1:-74487441 | Msa1214010:CDS |
| TAGAGTTAGAGTGGCTATGC+AGG | 0.502537 | 8_1:+74485247 | None:intergenic |
| AATCGGAATGCTACCAATCT+CGG | 0.507178 | 8_1:-74487803 | Msa1214010:CDS |
| AGAGTGGTGGACATGGAAAT+CGG | 0.515161 | 8_1:-74487820 | Msa1214010:exon |
| AGTGGTGGAAGTGCGAAGAA+TGG | 0.524949 | 8_1:+74487732 | None:intergenic |
| ATCTAGATCAAGACAAGAAG+TGG | 0.525367 | 8_1:+74486511 | None:intergenic |
| CTAGATAACATCCTTGGTGG+AGG | 0.531137 | 8_1:-74486494 | Msa1214010:CDS |
| GAGCCATATCATCAAAGTCT+TGG | 0.534652 | 8_1:+74485533 | None:intergenic |
| GGCATGTGGCATTGCTTAGG+TGG | 0.534874 | 8_1:+74485077 | None:intergenic |
| CTTGGTTATCCTTGTGAAAG+TGG | 0.536868 | 8_1:+74485942 | None:intergenic |
| TTAGGTGGAGTCCCGGGCAT+CGG | 0.539291 | 8_1:-74486323 | Msa1214010:intron |
| AAAAGTATTCATTTGGCATG+TGG | 0.543183 | 8_1:+74485063 | None:intergenic |
| TGTATATTGCCTTCCCACCT+AGG | 0.543573 | 8_1:+74486134 | None:intergenic |
| AGAGGAAAGCTCTTAGCAGC+TGG | 0.543939 | 8_1:-74487772 | Msa1214010:CDS |
| TCCACCACTCACCTTGCTCG+AGG | 0.547898 | 8_1:-74487718 | Msa1214010:intron |
| CAGATTCCCTTAGACTATGG+TGG | 0.548711 | 8_1:-74486157 | Msa1214010:CDS |
| TTTCACCAAGTAATCGAGTC+CGG | 0.557484 | 8_1:+74485509 | None:intergenic |
| CCATATCATCAAAGTCTTGG+CGG | 0.560623 | 8_1:+74485536 | None:intergenic |
| ATTTATTTAGGTGGAGTCCC+GGG | 0.561610 | 8_1:-74486329 | Msa1214010:intron |
| TAGACTATGGTGGCCTAGGT+GGG | 0.562545 | 8_1:-74486147 | Msa1214010:CDS |
| GGCATTGCTTAGGTGGATGA+TGG | 0.567849 | 8_1:+74485084 | None:intergenic |
| AGTTTAATGCACCCAATAGA+CGG | 0.568116 | 8_1:+74485297 | None:intergenic |
| ACCTCGAGCAAGGTGAGTGG+TGG | 0.569638 | 8_1:+74487717 | None:intergenic |
| TGTAGGTGGTCAGACTGCTT+GGG | 0.572676 | 8_1:-74486570 | Msa1214010:intron |
| CTATGGTGGCCTAGGTGGGA+AGG | 0.579059 | 8_1:-74486143 | Msa1214010:CDS |
| CTATACTGAACAAATTGCGT+TGG | 0.579516 | 8_1:-74485855 | Msa1214010:CDS |
| GTAACTAGTGTATATATAGA+GGG | 0.580150 | 8_1:-74485159 | Msa1214010:intron |
| TTAGACTATGGTGGCCTAGG+TGG | 0.582042 | 8_1:-74486148 | Msa1214010:CDS |
| ACTTTGATGATATGGCTCTC+CGG | 0.582235 | 8_1:-74485528 | Msa1214010:CDS |
| TGCAATTAATCCCTCCACCA+AGG | 0.588385 | 8_1:+74486483 | None:intergenic |
| GATCTAGATAACATCCTTGG+TGG | 0.590736 | 8_1:-74486497 | Msa1214010:CDS |
| TGAAAATGAAACCTCGAGCA+AGG | 0.593132 | 8_1:+74487707 | None:intergenic |
| TCACTAACTTAGAGTTAGAG+TGG | 0.593376 | 8_1:+74485238 | None:intergenic |
| GGTTATCCTTGTGAAAGTGG+TGG | 0.596378 | 8_1:+74485945 | None:intergenic |
| ACGAAAGAGAGTGGTGGACA+TGG | 0.596705 | 8_1:-74487827 | Msa1214010:exon |
| CCAATCTCGGCATCAAAGAG+AGG | 0.613185 | 8_1:-74487790 | Msa1214010:CDS |
| AGTGATTTGGACAAATCAAG+TGG | 0.619589 | 8_1:-74487392 | Msa1214010:CDS |
| TTACTTGGACAAATTCGTAA+CGG | 0.626860 | 8_1:-74485828 | Msa1214010:CDS |
| TAGATAACATCCTTGGTGGA+GGG | 0.628191 | 8_1:-74486493 | Msa1214010:CDS |
| GCATGATACTCAGATACTGA+AGG | 0.630770 | 8_1:-74486034 | Msa1214010:intron |
| AATAGACGGAATCAGCGGTA+CGG | 0.639494 | 8_1:+74485311 | None:intergenic |
| CCTAGGCCACCATAGTCTAA+GGG | 0.645792 | 8_1:+74486151 | None:intergenic |
| TGCTTGGGATATGCTCAATG+AGG | 0.650417 | 8_1:-74486555 | Msa1214010:CDS |
| GGAAAAGTAACGAAAGAGAG+TGG | 0.656516 | 8_1:-74487836 | Msa1214010:five_prime_UTR |
| TCTTTGATAGCAGTGACATG+AGG | 0.661594 | 8_1:-74485390 | Msa1214010:CDS |
| TGGAAGTGCGAAGAATGGAG+TGG | 0.664143 | 8_1:+74487737 | None:intergenic |
| GGCGAAAATGAAGAAGAGTG+TGG | 0.664229 | 8_1:-74487857 | Msa1214010:five_prime_UTR |
| CACCCAATAGACGGAATCAG+CGG | 0.678229 | 8_1:+74485306 | None:intergenic |
| GTGATTTGGACAAATCAAGT+GGG | 0.679047 | 8_1:-74487391 | Msa1214010:CDS |
| GAAACCTCGAGCAAGGTGAG+TGG | 0.680004 | 8_1:+74487714 | None:intergenic |
| GGTGGGAAGGCAATATACAT+CGG | 0.695624 | 8_1:-74486130 | Msa1214010:intron |
| AAAGTAACGAAAGAGAGTGG+TGG | 0.702834 | 8_1:-74487833 | Msa1214010:five_prime_UTR |
| ATATAGCCACCACTTTCACA+AGG | 0.714463 | 8_1:-74485951 | Msa1214010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTTTTTAACATTTAAAA+GGG | + | chr8_1:74485118-74485137 | None:intergenic | 10.0% |
| !!! | TAAACTTTTTAACATTTAAA+AGG | + | chr8_1:74485119-74485138 | None:intergenic | 10.0% |
| !! | CTTAGTTTATTTATTTATTT+AGG | - | chr8_1:74486441-74486460 | Msa1214010:intron | 10.0% |
| !!! | AACTTTTTAACATTTAAAAG+GGG | + | chr8_1:74485117-74485136 | None:intergenic | 15.0% |
| !!! | GATATCTTTTTGTTATTATA+TGG | - | chr8_1:74485182-74485201 | Msa1214010:three_prime_UTR | 15.0% |
| !! | CAAAAACATGTAAATTTAAT+TGG | + | chr8_1:74486378-74486397 | None:intergenic | 15.0% |
| !! | AGTTTATTTATTTATTTAGG+TGG | - | chr8_1:74486444-74486463 | Msa1214010:intron | 15.0% |
| !!! | TATTCAATTGATATTTCTTT+TGG | - | chr8_1:74487006-74487025 | Msa1214010:intron | 15.0% |
| !!! | ACTTTTTAACATTTAAAAGG+GGG | + | chr8_1:74485116-74485135 | None:intergenic | 20.0% |
| !!! | TGCTAACTTTATACAATTTT+GGG | + | chr8_1:74485154-74485173 | None:intergenic | 20.0% |
| !!! | TTGCTAACTTTATACAATTT+TGG | + | chr8_1:74485155-74485174 | None:intergenic | 20.0% |
| !! | ACATTAGAACTATTTATACA+TGG | + | chr8_1:74485540-74485559 | None:intergenic | 20.0% |
| !! | AAATTAATAGACATTCTGTT+TGG | - | chr8_1:74485801-74485820 | Msa1214010:intron | 20.0% |
| !! | AAAAAAAATTGCATACACAA+GGG | + | chr8_1:74486153-74486172 | None:intergenic | 20.0% |
| !! | AAAAAAAAATTGCATACACA+AGG | + | chr8_1:74486154-74486173 | None:intergenic | 20.0% |
| !! | AATAGAGAAGAAAACTATTA+AGG | + | chr8_1:74486403-74486422 | None:intergenic | 20.0% |
| !! | TAGAAACATGAAATAGAAAT+CGG | + | chr8_1:74486517-74486536 | None:intergenic | 20.0% |
| !!! | ATATTTTCCAAGATACTATT+CGG | + | chr8_1:74486886-74486905 | None:intergenic | 20.0% |
| !!! | TTCTTTTAATGCATTGTTAT+AGG | - | chr8_1:74487186-74487205 | Msa1214010:intron | 20.0% |
| !! | AAACTAGAACTCTATATATT+AGG | - | chr8_1:74487503-74487522 | Msa1214010:intron | 20.0% |
| !!! | TAGACTTAAAAGTATTCATT+TGG | + | chr8_1:74487729-74487748 | None:intergenic | 20.0% |
| !!! | TGAATACTTTTAAGTCTATT+TGG | - | chr8_1:74487731-74487750 | Msa1214010:CDS | 20.0% |
| !! | CTTTTTAACATTTAAAAGGG+GGG | + | chr8_1:74485115-74485134 | None:intergenic | 25.0% |
| !! | GCTAACTTTATACAATTTTG+GGG | + | chr8_1:74485153-74485172 | None:intergenic | 25.0% |
| !!! | ATATGGATTGTTTTGCAATA+TGG | - | chr8_1:74485199-74485218 | Msa1214010:three_prime_UTR | 25.0% |
| ! | TTGCAATATGGATAATATGA+AGG | - | chr8_1:74485211-74485230 | Msa1214010:three_prime_UTR | 25.0% |
| !!! | TTCAATTTTGAGGATCAAAT+TGG | - | chr8_1:74485252-74485271 | Msa1214010:three_prime_UTR | 25.0% |
| !!! | TCAATTTTGAGGATCAAATT+GGG | - | chr8_1:74485253-74485272 | Msa1214010:three_prime_UTR | 25.0% |
| ! | ATCTGTTCAAATCAAATGAT+GGG | + | chr8_1:74485316-74485335 | None:intergenic | 25.0% |
| ! | TATCTGTTCAAATCAAATGA+TGG | + | chr8_1:74485317-74485336 | None:intergenic | 25.0% |
| ! | AGTAACACTAATGTTATTCA+TGG | - | chr8_1:74485414-74485433 | Msa1214010:CDS | 25.0% |
| !!! | TTGAAGTTGATATACATCAT+TGG | + | chr8_1:74485452-74485471 | None:intergenic | 25.0% |
| ! | ATCTTCACATACTTAACAAA+GGG | + | chr8_1:74485724-74485743 | None:intergenic | 25.0% |
| ! | AATCTTCACATACTTAACAA+AGG | + | chr8_1:74485725-74485744 | None:intergenic | 25.0% |
| !! | GTTATTTAACTTTCCTCAAT+TGG | + | chr8_1:74485749-74485768 | None:intergenic | 25.0% |
| ! | AAAATATCCTGGAAATTGTA+TGG | + | chr8_1:74485946-74485965 | None:intergenic | 25.0% |
| !! | TTAACTAGCTCTTATCATAT+TGG | + | chr8_1:74486045-74486064 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCGATACA+GGG | - | chr8_1:74486061-74486080 | Msa1214010:intron | 25.0% |
| ! | AAACTACATATGTATTCCAA+TGG | + | chr8_1:74486094-74486113 | None:intergenic | 25.0% |
| ! | CCTACACAACAAAAAAAAAA+TGG | + | chr8_1:74486198-74486217 | None:intergenic | 25.0% |
| !!! | CCATTTTTTTTTTGTTGTGT+AGG | - | chr8_1:74486195-74486214 | Msa1214010:intron | 25.0% |
| !!! | TTTTTTTTTTGTTGTGTAGG+TGG | - | chr8_1:74486198-74486217 | Msa1214010:intron | 25.0% |
| !!! | TCTTGAGTTGTGAAATATTT+TGG | - | chr8_1:74486545-74486564 | Msa1214010:CDS | 25.0% |
| !! | TATTTTCCAAGATACTATTC+GGG | + | chr8_1:74486885-74486904 | None:intergenic | 25.0% |
| ! | GCATTAAAAGAATATCATGA+TGG | + | chr8_1:74487178-74487197 | None:intergenic | 25.0% |
| !! | CTATCAAGTTTTTGCTTTAT+CGG | - | chr8_1:74487437-74487456 | Msa1214010:CDS | 25.0% |
| ! | GAACTCTATATATTAGGAAT+TGG | - | chr8_1:74487509-74487528 | Msa1214010:intron | 25.0% |
| ! | TGTAACTAGTGTATATATAG+AGG | - | chr8_1:74487622-74487641 | Msa1214010:intron | 25.0% |
| ! | GTAACTAGTGTATATATAGA+GGG | - | chr8_1:74487623-74487642 | Msa1214010:intron | 25.0% |
| !! | ACTTTATACAATTTTGGGGA+TGG | + | chr8_1:74485149-74485168 | None:intergenic | 30.0% |
| GTATAAAGTTAGCAATGTCA+TGG | - | chr8_1:74485160-74485179 | Msa1214010:intron | 30.0% | |
| ! | GATACACTACTTCAATTTTG+AGG | - | chr8_1:74485242-74485261 | Msa1214010:three_prime_UTR | 30.0% |
| ! | GCTAAGTTTTTACGTAGAAA+TGG | + | chr8_1:74485478-74485497 | None:intergenic | 30.0% |
| ! | ATGCAGTTATCAGAGTTTTT+AGG | - | chr8_1:74485507-74485526 | Msa1214010:CDS | 30.0% |
| GGGTATGTTTGGATAATAAT+TGG | + | chr8_1:74485580-74485599 | None:intergenic | 30.0% | |
| TTATTCACATAGGGTATGTT+TGG | + | chr8_1:74485591-74485610 | None:intergenic | 30.0% | |
| CCATTAGCATTATTCACATA+GGG | + | chr8_1:74485600-74485619 | None:intergenic | 30.0% | |
| TCCATTAGCATTATTCACAT+AGG | + | chr8_1:74485601-74485620 | None:intergenic | 30.0% | |
| TATGTGAATAATGCTAATGG+AGG | - | chr8_1:74485600-74485619 | Msa1214010:intron | 30.0% | |
| ! | CAAGATGTTGCTAAACTTTT+GGG | + | chr8_1:74485634-74485653 | None:intergenic | 30.0% |
| ! | TCAAGATGTTGCTAAACTTT+TGG | + | chr8_1:74485635-74485654 | None:intergenic | 30.0% |
| !! | TTAACAAAGGGAGTATTTCT+AGG | + | chr8_1:74485712-74485731 | None:intergenic | 30.0% |
| TATGTGAAGATTACCAATTG+AGG | - | chr8_1:74485733-74485752 | Msa1214010:intron | 30.0% | |
| TTAATAGACATTCTGTTTGG+TGG | - | chr8_1:74485804-74485823 | Msa1214010:intron | 30.0% | |
| ! | TCTTATTTGAGCTTATCTAC+TGG | - | chr8_1:74485841-74485860 | Msa1214010:CDS | 30.0% |
| ! | GTTAAGTTGTTTATCGATAC+AGG | - | chr8_1:74486060-74486079 | Msa1214010:intron | 30.0% |
| AATCAAAGACTTGCATCAAA+TGG | + | chr8_1:74486716-74486735 | None:intergenic | 30.0% | |
| ! | AATTGCGTTGGTAAATTACT+TGG | - | chr8_1:74486939-74486958 | Msa1214010:intron | 30.0% |
| TTACTTGGACAAATTCGTAA+CGG | - | chr8_1:74486954-74486973 | Msa1214010:intron | 30.0% | |
| !! | TTTTAACTAGTTACAACCCA+AGG | + | chr8_1:74487091-74487110 | None:intergenic | 30.0% |
| CTAACTCTAAGTTAGTGAAT+AGG | - | chr8_1:74487549-74487568 | Msa1214010:intron | 30.0% | |
| !! | AAAAGTATTCATTTGGCATG+TGG | + | chr8_1:74487722-74487741 | None:intergenic | 30.0% |
| TTTGTCCAAATCACTACTTC+TGG | + | chr8_1:74485385-74485404 | None:intergenic | 35.0% | |
| ! | AGTGATTTGGACAAATCAAG+TGG | - | chr8_1:74485390-74485409 | Msa1214010:CDS | 35.0% |
| ! | GTGATTTGGACAAATCAAGT+GGG | - | chr8_1:74485391-74485410 | Msa1214010:CDS | 35.0% |
| CCCTATGTGAATAATGCTAA+TGG | - | chr8_1:74485597-74485616 | Msa1214010:intron | 35.0% | |
| CTATATCTACATCCCATCTA+GGG | + | chr8_1:74485680-74485699 | None:intergenic | 35.0% | |
| TCTATATCTACATCCCATCT+AGG | + | chr8_1:74485681-74485700 | None:intergenic | 35.0% | |
| ACTTATGAGACTGTTTGAGA+GGG | - | chr8_1:74485871-74485890 | Msa1214010:CDS | 35.0% | |
| TATGGAGTCAAGCTAAAACA+AGG | + | chr8_1:74485928-74485947 | None:intergenic | 35.0% | |
| ATCTAGATCAAGACAAGAAG+TGG | + | chr8_1:74486274-74486293 | None:intergenic | 35.0% | |
| CTTGATCTAGATAACATCCT+TGG | - | chr8_1:74486282-74486301 | Msa1214010:intron | 35.0% | |
| TGCAAAGAAGTGACTGAAAT+TGG | - | chr8_1:74486318-74486337 | Msa1214010:CDS | 35.0% | |
| TATTTATTTAGGTGGAGTCC+CGG | - | chr8_1:74486452-74486471 | Msa1214010:intron | 35.0% | |
| ! | GCATCGGTAAAACACAAATA+GGG | - | chr8_1:74486475-74486494 | Msa1214010:CDS | 35.0% |
| AGATACTGAAGGAAGCTTTA+TGG | - | chr8_1:74486759-74486778 | Msa1214010:intron | 35.0% | |
| !!! | GCATTTTAACTCCAAAAGCT+TGG | + | chr8_1:74486861-74486880 | None:intergenic | 35.0% |
| CTATACTGAACAAATTGCGT+TGG | - | chr8_1:74486927-74486946 | Msa1214010:intron | 35.0% | |
| !!! | CTTTATTTTCTTCCGCATTC+AGG | - | chr8_1:74487125-74487144 | Msa1214010:intron | 35.0% |
| CTAAAACAATTGCCTGAATG+CGG | + | chr8_1:74487140-74487159 | None:intergenic | 35.0% | |
| GCTTGCAAAAAACTTCTCTT+TGG | - | chr8_1:74487315-74487334 | Msa1214010:intron | 35.0% | |
| AGTTTAATGCACCCAATAGA+CGG | + | chr8_1:74487488-74487507 | None:intergenic | 35.0% | |
| TCACTAACTTAGAGTTAGAG+TGG | + | chr8_1:74487547-74487566 | None:intergenic | 35.0% | |
| AGTGTATATATAGAGGGATG+AGG | - | chr8_1:74487629-74487648 | Msa1214010:intron | 35.0% | |
| GGAAAAGTAACGAAAGAGAG+TGG | - | chr8_1:74484946-74484965 | Msa1214010:three_prime_UTR | 40.0% | |
| AAAGTAACGAAAGAGAGTGG+TGG | - | chr8_1:74484949-74484968 | Msa1214010:three_prime_UTR | 40.0% | |
| AATCGGAATGCTACCAATCT+CGG | - | chr8_1:74484979-74484998 | Msa1214010:three_prime_UTR | 40.0% | |
| TGAAAATGAAACCTCGAGCA+AGG | + | chr8_1:74485078-74485097 | None:intergenic | 40.0% | |
| ! | AGTTTCTGAGAGTGAAGCAT+TGG | - | chr8_1:74485341-74485360 | Msa1214010:CDS | 40.0% |
| TGCAACCAGAAGTAGTGATT+TGG | - | chr8_1:74485377-74485396 | Msa1214010:CDS | 40.0% | |
| ! | TTCTGTTTGGTGGACATGTT+TGG | - | chr8_1:74485814-74485833 | Msa1214010:intron | 40.0% |
| CACTTATGAGACTGTTTGAG+AGG | - | chr8_1:74485870-74485889 | Msa1214010:CDS | 40.0% | |
| AGACTGTTTGAGAGGGTTTA+TGG | - | chr8_1:74485878-74485897 | Msa1214010:CDS | 40.0% | |
| CTTGACTCCATACAATTTCC+AGG | - | chr8_1:74485936-74485955 | Msa1214010:CDS | 40.0% | |
| ! | GCTGACTTCACAAAATATCC+TGG | + | chr8_1:74485957-74485976 | None:intergenic | 40.0% |
| GATCTAGATAACATCCTTGG+TGG | - | chr8_1:74486285-74486304 | Msa1214010:intron | 40.0% | |
| TAGATAACATCCTTGGTGGA+GGG | - | chr8_1:74486289-74486308 | Msa1214010:intron | 40.0% | |
| ATTGGTGAGTGACTGTTTGT+TGG | - | chr8_1:74486336-74486355 | Msa1214010:intron | 40.0% | |
| ATTTATTTAGGTGGAGTCCC+GGG | - | chr8_1:74486453-74486472 | Msa1214010:intron | 40.0% | |
| ! | ATTTGTGTTTTACCGATGCC+CGG | + | chr8_1:74486474-74486493 | None:intergenic | 40.0% |
| !! | GGCATCGGTAAAACACAAAT+AGG | - | chr8_1:74486474-74486493 | Msa1214010:CDS | 40.0% |
| GTTCAGATTCCCTTAGACTA+TGG | - | chr8_1:74486622-74486641 | Msa1214010:intron | 40.0% | |
| GCATGATACTCAGATACTGA+AGG | - | chr8_1:74486748-74486767 | Msa1214010:intron | 40.0% | |
| ATATAGCCACCACTTTCACA+AGG | - | chr8_1:74486831-74486850 | Msa1214010:intron | 40.0% | |
| CTTGGTTATCCTTGTGAAAG+TGG | + | chr8_1:74486843-74486862 | None:intergenic | 40.0% | |
| ! | CACAAGGATAACCAAGCTTT+TGG | - | chr8_1:74486847-74486866 | Msa1214010:intron | 40.0% |
| AATGCACCCGAATAGTATCT+TGG | - | chr8_1:74486876-74486895 | Msa1214010:intron | 40.0% | |
| TTCTCACTGTACAATGCCTT+GGG | - | chr8_1:74487072-74487091 | Msa1214010:intron | 40.0% | |
| CCATATCATCAAAGTCTTGG+CGG | + | chr8_1:74487249-74487268 | None:intergenic | 40.0% | |
| GAGCCATATCATCAAAGTCT+TGG | + | chr8_1:74487252-74487271 | None:intergenic | 40.0% | |
| ! | ACTTTGATGATATGGCTCTC+CGG | - | chr8_1:74487254-74487273 | Msa1214010:intron | 40.0% |
| TTTCACCAAGTAATCGAGTC+CGG | + | chr8_1:74487276-74487295 | None:intergenic | 40.0% | |
| ! | TCTTTGATAGCAGTGACATG+AGG | - | chr8_1:74487392-74487411 | Msa1214010:CDS | 40.0% |
| GGCGAAAATGAAGAAGAGTG+TGG | - | chr8_1:74484925-74484944 | Msa1214010:three_prime_UTR | 45.0% | |
| !! | AGAGTGGTGGACATGGAAAT+CGG | - | chr8_1:74484962-74484981 | Msa1214010:three_prime_UTR | 45.0% |
| GGTTAAGCACGAGAATCGAT+TGG | + | chr8_1:74485659-74485678 | None:intergenic | 45.0% | |
| TTCTCGTGCTTAACCCTAGA+TGG | - | chr8_1:74485664-74485683 | Msa1214010:intron | 45.0% | |
| TCTCGTGCTTAACCCTAGAT+GGG | - | chr8_1:74485665-74485684 | Msa1214010:intron | 45.0% | |
| TTTGTCATTGAGCACACGCA+TGG | + | chr8_1:74485783-74485802 | None:intergenic | 45.0% | |
| GATACAGGGTCTCTTACCAT+TGG | - | chr8_1:74486075-74486094 | Msa1214010:intron | 45.0% | |
| TGCTTGGGATATGCTCAATG+AGG | - | chr8_1:74486227-74486246 | Msa1214010:intron | 45.0% | |
| CTAGATAACATCCTTGGTGG+AGG | - | chr8_1:74486288-74486307 | Msa1214010:intron | 45.0% | |
| TGCAATTAATCCCTCCACCA+AGG | + | chr8_1:74486302-74486321 | None:intergenic | 45.0% | |
| ! | TTTGTGTTTTACCGATGCCC+GGG | + | chr8_1:74486473-74486492 | None:intergenic | 45.0% |
| CAGATTCCCTTAGACTATGG+TGG | - | chr8_1:74486625-74486644 | Msa1214010:intron | 45.0% | |
| TGTATATTGCCTTCCCACCT+AGG | + | chr8_1:74486651-74486670 | None:intergenic | 45.0% | |
| GGTGGGAAGGCAATATACAT+CGG | - | chr8_1:74486652-74486671 | Msa1214010:intron | 45.0% | |
| GGTTATCCTTGTGAAAGTGG+TGG | + | chr8_1:74486840-74486859 | None:intergenic | 45.0% | |
| !! | CAAGGCATTGTACAGTGAGA+AGG | + | chr8_1:74487073-74487092 | None:intergenic | 45.0% |
| CTTCTCACTGTACAATGCCT+TGG | - | chr8_1:74487071-74487090 | Msa1214010:intron | 45.0% | |
| ! | CCGCCAAGACTTTGATGATA+TGG | - | chr8_1:74487246-74487265 | Msa1214010:intron | 45.0% |
| AATAGACGGAATCAGCGGTA+CGG | + | chr8_1:74487474-74487493 | None:intergenic | 45.0% | |
| !! | TACCGCTGATTCCGTCTATT+GGG | - | chr8_1:74487474-74487493 | Msa1214010:intron | 45.0% |
| TAGAGTTAGAGTGGCTATGC+AGG | + | chr8_1:74487538-74487557 | None:intergenic | 45.0% | |
| ! | AGGTCAAGATGTGGAAGTAC+AGG | + | chr8_1:74487656-74487675 | None:intergenic | 45.0% |
| TGTACTTCCACATCTTGACC+TGG | - | chr8_1:74487655-74487674 | Msa1214010:intron | 45.0% | |
| TTTGGCATGTGGCATTGCTT+AGG | + | chr8_1:74487711-74487730 | None:intergenic | 45.0% | |
| !! | ACGAAAGAGAGTGGTGGACA+TGG | - | chr8_1:74484955-74484974 | Msa1214010:three_prime_UTR | 50.0% |
| CCTCTCTTTGATGCCGAGAT+TGG | + | chr8_1:74484995-74485014 | None:intergenic | 50.0% | |
| CCAATCTCGGCATCAAAGAG+AGG | - | chr8_1:74484992-74485011 | Msa1214010:three_prime_UTR | 50.0% | |
| AGAGGAAAGCTCTTAGCAGC+TGG | - | chr8_1:74485010-74485029 | Msa1214010:three_prime_UTR | 50.0% | |
| ! | TGGAAGTGCGAAGAATGGAG+TGG | + | chr8_1:74485048-74485067 | None:intergenic | 50.0% |
| ! | AGTGGTGGAAGTGCGAAGAA+TGG | + | chr8_1:74485053-74485072 | None:intergenic | 50.0% |
| TGTAGGTGGTCAGACTGCTT+GGG | - | chr8_1:74486212-74486231 | Msa1214010:intron | 50.0% | |
| TGCGTAGTGTTTGCTTCTGC+AGG | - | chr8_1:74486581-74486600 | Msa1214010:intron | 50.0% | |
| CCTAGGCCACCATAGTCTAA+GGG | + | chr8_1:74486634-74486653 | None:intergenic | 50.0% | |
| ACCTAGGCCACCATAGTCTA+AGG | + | chr8_1:74486635-74486654 | None:intergenic | 50.0% | |
| TTAGACTATGGTGGCCTAGG+TGG | - | chr8_1:74486634-74486653 | Msa1214010:intron | 50.0% | |
| TAGACTATGGTGGCCTAGGT+GGG | - | chr8_1:74486635-74486654 | Msa1214010:intron | 50.0% | |
| CATCAAAGTCTTGGCGGAAG+TGG | + | chr8_1:74487243-74487262 | None:intergenic | 50.0% | |
| !! | GTACCGCTGATTCCGTCTAT+TGG | - | chr8_1:74487473-74487492 | Msa1214010:intron | 50.0% |
| CACCCAATAGACGGAATCAG+CGG | + | chr8_1:74487479-74487498 | None:intergenic | 50.0% | |
| ACTTCCACATCTTGACCTGG+TGG | - | chr8_1:74487658-74487677 | Msa1214010:intron | 50.0% | |
| ACAACCACCAGGTCAAGATG+TGG | + | chr8_1:74487665-74487684 | None:intergenic | 50.0% | |
| ACATCTTGACCTGGTGGTTG+TGG | - | chr8_1:74487664-74487683 | Msa1214010:intron | 50.0% | |
| TCACAGATTCCACAACCACC+AGG | + | chr8_1:74487676-74487695 | None:intergenic | 50.0% | |
| GGCATTGCTTAGGTGGATGA+TGG | + | chr8_1:74487701-74487720 | None:intergenic | 50.0% | |
| GAAACCTCGAGCAAGGTGAG+TGG | + | chr8_1:74485071-74485090 | None:intergenic | 55.0% | |
| GTGTAGGTGGTCAGACTGCT+TGG | - | chr8_1:74486211-74486230 | Msa1214010:intron | 55.0% | |
| CCCTTAGACTATGGTGGCCT+AGG | - | chr8_1:74486631-74486650 | Msa1214010:intron | 55.0% | |
| GCTCTCCGGACTCGATTACT+TGG | - | chr8_1:74487268-74487287 | Msa1214010:intron | 55.0% | |
| GGCATGTGGCATTGCTTAGG+TGG | + | chr8_1:74487708-74487727 | None:intergenic | 55.0% | |
| TCCACCACTCACCTTGCTCG+AGG | - | chr8_1:74485064-74485083 | Msa1214010:three_prime_UTR | 60.0% | |
| ACCTCGAGCAAGGTGAGTGG+TGG | + | chr8_1:74485068-74485087 | None:intergenic | 60.0% | |
| TTAGGTGGAGTCCCGGGCAT+CGG | - | chr8_1:74486459-74486478 | Msa1214010:intron | 60.0% | |
| CTATGGTGGCCTAGGTGGGA+AGG | - | chr8_1:74486639-74486658 | Msa1214010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 74484918 | 74487886 | 74484918 | ID=Msa1214010;Name=Msa1214010 |
| chr8_1 | mRNA | 74484918 | 74487886 | 74484918 | ID=Msa1214010-mRNA-1;Parent=Msa1214010;Name=Msa1214010-mRNA-1;_AED=0.17;_eAED=0.17;_QI=56|0.85|0.87|1|0.85|0.75|8|346|318 |
| chr8_1 | exon | 74484918 | 74485124 | 74484918 | ID=Msa1214010-mRNA-1:exon:25507;Parent=Msa1214010-mRNA-1 |
| chr8_1 | exon | 74485161 | 74485596 | 74485161 | ID=Msa1214010-mRNA-1:exon:25506;Parent=Msa1214010-mRNA-1 |
| chr8_1 | exon | 74485817 | 74486043 | 74485817 | ID=Msa1214010-mRNA-1:exon:25505;Parent=Msa1214010-mRNA-1 |
| chr8_1 | exon | 74486131 | 74486201 | 74486131 | ID=Msa1214010-mRNA-1:exon:25504;Parent=Msa1214010-mRNA-1 |
| chr8_1 | exon | 74486308 | 74486341 | 74486308 | ID=Msa1214010-mRNA-1:exon:25503;Parent=Msa1214010-mRNA-1 |
| chr8_1 | exon | 74486465 | 74486587 | 74486465 | ID=Msa1214010-mRNA-1:exon:25502;Parent=Msa1214010-mRNA-1 |
| chr8_1 | exon | 74487369 | 74487461 | 74487369 | ID=Msa1214010-mRNA-1:exon:25501;Parent=Msa1214010-mRNA-1 |
| chr8_1 | exon | 74487719 | 74487886 | 74487719 | ID=Msa1214010-mRNA-1:exon:25500;Parent=Msa1214010-mRNA-1 |
| chr8_1 | five_prime_UTR | 74487831 | 74487886 | 74487831 | ID=Msa1214010-mRNA-1:five_prime_utr;Parent=Msa1214010-mRNA-1 |
| chr8_1 | CDS | 74487719 | 74487830 | 74487719 | ID=Msa1214010-mRNA-1:cds;Parent=Msa1214010-mRNA-1 |
| chr8_1 | CDS | 74487369 | 74487461 | 74487369 | ID=Msa1214010-mRNA-1:cds;Parent=Msa1214010-mRNA-1 |
| chr8_1 | CDS | 74486465 | 74486587 | 74486465 | ID=Msa1214010-mRNA-1:cds;Parent=Msa1214010-mRNA-1 |
| chr8_1 | CDS | 74486308 | 74486341 | 74486308 | ID=Msa1214010-mRNA-1:cds;Parent=Msa1214010-mRNA-1 |
| chr8_1 | CDS | 74486131 | 74486201 | 74486131 | ID=Msa1214010-mRNA-1:cds;Parent=Msa1214010-mRNA-1 |
| chr8_1 | CDS | 74485817 | 74486043 | 74485817 | ID=Msa1214010-mRNA-1:cds;Parent=Msa1214010-mRNA-1 |
| chr8_1 | CDS | 74485300 | 74485596 | 74485300 | ID=Msa1214010-mRNA-1:cds;Parent=Msa1214010-mRNA-1 |
| chr8_1 | three_prime_UTR | 74485161 | 74485299 | 74485161 | ID=Msa1214010-mRNA-1:three_prime_utr;Parent=Msa1214010-mRNA-1 |
| chr8_1 | three_prime_UTR | 74484918 | 74485124 | 74484918 | ID=Msa1214010-mRNA-1:three_prime_utr;Parent=Msa1214010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
