Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213930 | sp|Q8GXF0|RA51C_ARATH | 66.176 | 272 | 84 | 3 | 1 | 269 | 22 | 288 | 6.46e-122 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213930 | G7JFT5 | 97.388 | 268 | 4 | 1 | 1 | 265 | 1 | 268 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa1213930 | 0.808012 | 3.816890e-50 | -8.615850e-47 |
| Msa0027260 | Msa1213930 | 0.801522 | 8.653295e-49 | -8.615850e-47 |
| Msa0110360 | Msa1213930 | 0.801931 | 7.132136e-49 | -8.615850e-47 |
| Msa1074810 | Msa1213930 | 0.803870 | 2.835257e-49 | -8.615850e-47 |
| Msa1106700 | Msa1213930 | 0.805071 | 1.593052e-49 | -8.615850e-47 |
| Msa1126510 | Msa1213930 | 0.800072 | 1.710647e-48 | -8.615850e-47 |
| Msa1213930 | Msa1214010 | 0.816814 | 4.554648e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213930 | MtrunA17_Chr4g0011421 | 97.388 | 268 | 4 | 1 | 1 | 265 | 1 | 268 | 0.0 | 535 |
| Msa1213930 | MtrunA17_Chr4g0062441 | 99.474 | 190 | 1 | 0 | 76 | 265 | 1 | 190 | 1.85e-139 | 395 |
| Msa1213930 | MtrunA17_Chr1g0204601 | 32.889 | 225 | 126 | 5 | 54 | 274 | 76 | 279 | 6.49e-24 | 100 |
| Msa1213930 | MtrunA17_Chr4g0069901 | 32.549 | 255 | 137 | 7 | 15 | 265 | 42 | 265 | 1.49e-21 | 93.6 |
| Msa1213930 | MtrunA17_Chr2g0305351 | 30.220 | 182 | 109 | 4 | 87 | 263 | 20 | 188 | 4.92e-17 | 79.7 |
| Msa1213930 | MtrunA17_Chr2g0325901 | 31.319 | 182 | 107 | 4 | 71 | 248 | 83 | 250 | 5.24e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213930 | AT2G45280.1 | 66.176 | 272 | 84 | 3 | 1 | 269 | 22 | 288 | 6.57e-123 | 357 |
| Msa1213930 | AT2G45280.2 | 60.473 | 296 | 85 | 4 | 1 | 269 | 22 | 312 | 4.16e-119 | 348 |
| Msa1213930 | AT3G22880.2 | 34.928 | 209 | 112 | 4 | 69 | 274 | 91 | 278 | 3.06e-26 | 106 |
| Msa1213930 | AT3G22880.1 | 34.928 | 209 | 112 | 4 | 69 | 274 | 91 | 278 | 4.05e-26 | 106 |
| Msa1213930 | AT5G57450.2 | 32.195 | 205 | 120 | 4 | 68 | 265 | 3 | 195 | 1.03e-24 | 102 |
| Msa1213930 | AT5G57450.1 | 32.195 | 205 | 120 | 4 | 68 | 265 | 3 | 195 | 1.03e-24 | 102 |
| Msa1213930 | AT5G20850.2 | 30.196 | 255 | 143 | 7 | 15 | 265 | 43 | 266 | 5.24e-20 | 89.4 |
| Msa1213930 | AT5G20850.1 | 30.196 | 255 | 143 | 7 | 15 | 265 | 43 | 266 | 6.49e-20 | 89.4 |
| Msa1213930 | AT2G28560.4 | 29.670 | 182 | 110 | 4 | 71 | 248 | 33 | 200 | 2.93e-15 | 74.3 |
| Msa1213930 | AT2G28560.3 | 29.670 | 182 | 110 | 4 | 71 | 248 | 33 | 200 | 9.31e-15 | 74.3 |
| Msa1213930 | AT2G28560.1 | 29.670 | 182 | 110 | 4 | 71 | 248 | 65 | 232 | 1.10e-14 | 74.3 |
| Msa1213930 | AT2G28560.6 | 29.670 | 182 | 110 | 4 | 71 | 248 | 65 | 232 | 1.11e-14 | 74.3 |
| Msa1213930 | AT2G28560.5 | 29.670 | 182 | 110 | 4 | 71 | 248 | 65 | 232 | 1.11e-14 | 74.3 |
| Msa1213930 | AT2G28560.2 | 29.670 | 182 | 110 | 4 | 71 | 248 | 65 | 232 | 1.11e-14 | 74.3 |
Find 80 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAGGATAACCAAGCTTT+TGG | 0.263172 | 8_1:-74294855 | Msa1213930:CDS |
| AGATACTGAAGGAAGCTTTA+TGG | 0.268343 | 8_1:-74294943 | Msa1213930:CDS |
| CCGCCAAGACTTTGATGATA+TGG | 0.290126 | 8_1:-74294477 | Msa1213930:CDS |
| ACCTAGGCCACCATAGTCTA+AGG | 0.294287 | 8_1:+74295070 | None:intergenic |
| GGCATCGGTAAAACACAAAT+AGG | 0.294764 | 8_1:-74295228 | Msa1213930:CDS |
| AAACTAGAACTCTATATATT+AGG | 0.301300 | 8_1:-74294220 | Msa1213930:three_prime_UTR |
| GTTCAGATTCCCTTAGACTA+TGG | 0.313027 | 8_1:-74295080 | Msa1213930:CDS |
| TTTGTCCAAATCACTACTTC+TGG | 0.324317 | 8_1:+74296322 | None:intergenic |
| TAGACTTAAAAGTATTCATT+TGG | 0.344087 | 8_1:+74293997 | None:intergenic |
| TGTAACTAGTGTATATATAG+AGG | 0.345483 | 8_1:-74294101 | Msa1213930:intron |
| AATTGCGTTGGTAAATTACT+TGG | 0.346991 | 8_1:-74294763 | Msa1213930:CDS |
| TGCAACCAGAAGTAGTGATT+TGG | 0.352806 | 8_1:-74296327 | Msa1213930:CDS |
| TGCAAAGAAGTGACTGAAAT+TGG | 0.359942 | 8_1:-74295384 | Msa1213930:intron |
| AGTTTATGAGAGTGAAGCTT+TGG | 0.374114 | 8_1:-74296363 | Msa1213930:CDS |
| CCTCTCTTTGATGCCGAGAT+TGG | 0.378039 | 8_1:+74296712 | None:intergenic |
| AATTAAGTATTTAGAGCATA+AGG | 0.386210 | 8_1:+74293852 | None:intergenic |
| GAACTCTATATATTAGGAAT+TGG | 0.401508 | 8_1:-74294214 | Msa1213930:three_prime_UTR |
| GGAATATAAATATAAATAGT+TGG | 0.426810 | 8_1:-74296800 | None:intergenic |
| CCCTTAGACTATGGTGGCCT+AGG | 0.427121 | 8_1:-74295071 | Msa1213930:CDS |
| GTGTAGGTGGTCAGACTGCT+TGG | 0.459995 | 8_1:-74295491 | Msa1213930:intron |
| AGTAACACTAATGTTATTCA+TGG | 0.461751 | 8_1:-74296290 | Msa1213930:intron |
| CTAACTCTAAGTTAGTGAAT+AGG | 0.464821 | 8_1:-74294174 | Msa1213930:three_prime_UTR |
| CATCAAAGTCTTGGCGGAAG+TGG | 0.467042 | 8_1:+74294483 | None:intergenic |
| TTTGGCATGTGGCATTGCTT+AGG | 0.472159 | 8_1:+74294015 | None:intergenic |
| GCATCGGTAAAACACAAATA+GGG | 0.480592 | 8_1:-74295227 | Msa1213930:intron |
| CTTGATCTAGATAACATCCT+TGG | 0.482948 | 8_1:-74295420 | Msa1213930:CDS |
| GCTCTCCGGACTCGATTACT+TGG | 0.488443 | 8_1:-74294455 | Msa1213930:CDS |
| TATTTATTTAGGTGGAGTCC+CGG | 0.493765 | 8_1:-74295250 | Msa1213930:intron |
| TAGAGTTAGAGTGGCTATGC+AGG | 0.502537 | 8_1:+74294188 | None:intergenic |
| AATCGGAATGCTACCAATCT+CGG | 0.507178 | 8_1:-74296725 | Msa1213930:CDS |
| AGAGTGGTGGACATGGAAAT+CGG | 0.515161 | 8_1:-74296742 | Msa1213930:exon |
| AGTGGTGGAAGTGCGAAGAA+TGG | 0.524949 | 8_1:+74296654 | None:intergenic |
| ATCTAGATCAAGACAAGAAG+TGG | 0.525367 | 8_1:+74295431 | None:intergenic |
| CTAGATAACATCCTTGGTGG+AGG | 0.531137 | 8_1:-74295414 | Msa1213930:CDS |
| GAGCCATATCATCAAAGTCT+TGG | 0.534652 | 8_1:+74294474 | None:intergenic |
| GGCATGTGGCATTGCTTAGG+TGG | 0.534874 | 8_1:+74294018 | None:intergenic |
| CTTGGTTATCCTTGTGAAAG+TGG | 0.536868 | 8_1:+74294862 | None:intergenic |
| TTAGGTGGAGTCCCGGGCAT+CGG | 0.539291 | 8_1:-74295243 | Msa1213930:intron |
| AAAAGTATTCATTTGGCATG+TGG | 0.543183 | 8_1:+74294004 | None:intergenic |
| TGTATATTGCCTTCCCACCT+AGG | 0.543573 | 8_1:+74295054 | None:intergenic |
| AGAGGAAAGCTCTTAGCAGC+TGG | 0.543939 | 8_1:-74296694 | Msa1213930:CDS |
| TCCACCACTCACCTTGCTCG+AGG | 0.547898 | 8_1:-74296640 | Msa1213930:intron |
| CAGATTCCCTTAGACTATGG+TGG | 0.548711 | 8_1:-74295077 | Msa1213930:CDS |
| AGTTTAATGCACACAATAGA+CGG | 0.551203 | 8_1:+74294238 | None:intergenic |
| TTTCACCAAGTAATCGAGTC+CGG | 0.557484 | 8_1:+74294450 | None:intergenic |
| CCATATCATCAAAGTCTTGG+CGG | 0.560623 | 8_1:+74294477 | None:intergenic |
| ATTTATTTAGGTGGAGTCCC+GGG | 0.561610 | 8_1:-74295249 | Msa1213930:intron |
| TAGACTATGGTGGCCTAGGT+GGG | 0.562545 | 8_1:-74295067 | Msa1213930:CDS |
| ACCTCGAGCAAGGTGAGTGG+TGG | 0.569638 | 8_1:+74296639 | None:intergenic |
| TGTAGGTGGTCAGACTGCTT+GGG | 0.572676 | 8_1:-74295490 | Msa1213930:intron |
| CTATGGTGGCCTAGGTGGGA+AGG | 0.579059 | 8_1:-74295063 | Msa1213930:CDS |
| CTATACTGAACAAATTGCGT+TGG | 0.579516 | 8_1:-74294775 | Msa1213930:CDS |
| GTAACTAGTGTATATATAGA+GGG | 0.580150 | 8_1:-74294100 | Msa1213930:intron |
| TTAGACTATGGTGGCCTAGG+TGG | 0.582042 | 8_1:-74295068 | Msa1213930:CDS |
| ACTTTGATGATATGGCTCTC+CGG | 0.582235 | 8_1:-74294469 | Msa1213930:CDS |
| TGCAATTAATCCCTCCACCA+AGG | 0.588385 | 8_1:+74295403 | None:intergenic |
| GATCTAGATAACATCCTTGG+TGG | 0.590736 | 8_1:-74295417 | Msa1213930:CDS |
| TGAAAATGAAACCTCGAGCA+AGG | 0.593132 | 8_1:+74296629 | None:intergenic |
| TCACTAACTTAGAGTTAGAG+TGG | 0.593376 | 8_1:+74294179 | None:intergenic |
| GGTTATCCTTGTGAAAGTGG+TGG | 0.596378 | 8_1:+74294865 | None:intergenic |
| ACGAAAGAGAGTGGTGGACA+TGG | 0.596705 | 8_1:-74296749 | Msa1213930:exon |
| CCAATCTCGGCATCAAAGAG+AGG | 0.613185 | 8_1:-74296712 | Msa1213930:CDS |
| AGTGATTTGGACAAATCAAG+TGG | 0.619589 | 8_1:-74296314 | Msa1213930:CDS |
| TTACTTGGACAAATTCGTAA+CGG | 0.626860 | 8_1:-74294748 | Msa1213930:CDS |
| TAGATAACATCCTTGGTGGA+GGG | 0.628191 | 8_1:-74295413 | Msa1213930:CDS |
| GCATGATACTCAGATACTGA+AGG | 0.630770 | 8_1:-74294954 | Msa1213930:intron |
| AATAGACGGAATCAGCGGTA+CGG | 0.639494 | 8_1:+74294252 | None:intergenic |
| CCTAGGCCACCATAGTCTAA+GGG | 0.645792 | 8_1:+74295071 | None:intergenic |
| TGCTTGGGATATGCTCAATG+AGG | 0.650417 | 8_1:-74295475 | Msa1213930:CDS |
| GGAAAAGTAACGAAAGAGAG+TGG | 0.656516 | 8_1:-74296758 | Msa1213930:five_prime_UTR |
| TCTTTGATAGCAGTGACATG+AGG | 0.661594 | 8_1:-74294331 | Msa1213930:CDS |
| TGGAAGTGCGAAGAATGGAG+TGG | 0.664143 | 8_1:+74296659 | None:intergenic |
| GGCGAAAATGAAGAAGAGTG+TGG | 0.664229 | 8_1:-74296779 | Msa1213930:five_prime_UTR |
| GGCATTGCTTAGGTGGATGA+CGG | 0.666328 | 8_1:+74294025 | None:intergenic |
| GTGATTTGGACAAATCAAGT+GGG | 0.679047 | 8_1:-74296313 | Msa1213930:CDS |
| GAAACCTCGAGCAAGGTGAG+TGG | 0.680004 | 8_1:+74296636 | None:intergenic |
| GGTGGGAAGGCAATATACAT+CGG | 0.695624 | 8_1:-74295050 | Msa1213930:intron |
| CACACAATAGACGGAATCAG+CGG | 0.698871 | 8_1:+74294247 | None:intergenic |
| AAAGTAACGAAAGAGAGTGG+TGG | 0.702834 | 8_1:-74296755 | Msa1213930:five_prime_UTR |
| ATATAGCCACCACTTTCACA+AGG | 0.714463 | 8_1:-74294871 | Msa1213930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTTTTTAACATTTAAAA+GGG | + | chr8_1:74294056-74294075 | None:intergenic | 10.0% |
| !!! | TAAACTTTTTAACATTTAAA+AGG | + | chr8_1:74294057-74294076 | None:intergenic | 10.0% |
| !! | CTTAGTTTATTTATTTATTT+AGG | - | chr8_1:74295381-74295400 | Msa1213930:intron | 10.0% |
| !!! | AACTTTTTAACATTTAAAAG+GGG | + | chr8_1:74294055-74294074 | None:intergenic | 15.0% |
| !!! | GATATCTTTTTGTTATTATA+TGG | - | chr8_1:74294120-74294139 | Msa1213930:three_prime_UTR | 15.0% |
| !! | TACACAACAAAAAAAAAAAA+TGG | + | chr8_1:74295136-74295155 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTTGTTGTGT+AGG | - | chr8_1:74295135-74295154 | Msa1213930:intron | 15.0% |
| !! | CAAAAACATGTAAATTTAAT+TGG | + | chr8_1:74295318-74295337 | None:intergenic | 15.0% |
| !! | AGTTTATTTATTTATTTAGG+TGG | - | chr8_1:74295384-74295403 | Msa1213930:intron | 15.0% |
| !!! | ATATTTTCTAAGATACTATT+CGG | + | chr8_1:74295826-74295845 | None:intergenic | 15.0% |
| !!! | TATTCAATTGATATTTCTTT+TGG | - | chr8_1:74295946-74295965 | Msa1213930:intron | 15.0% |
| !!! | ACTTTTTAACATTTAAAAGG+GGG | + | chr8_1:74294054-74294073 | None:intergenic | 20.0% |
| !!! | TGCTAACTTTATACAATTTT+GGG | + | chr8_1:74294092-74294111 | None:intergenic | 20.0% |
| !!! | TTGCTAACTTTATACAATTT+TGG | + | chr8_1:74294093-74294112 | None:intergenic | 20.0% |
| !!! | TTGCAATATTGATAATATGA+AGG | - | chr8_1:74294149-74294168 | Msa1213930:three_prime_UTR | 20.0% |
| !! | ACATTAGAACTATTTATACA+TGG | + | chr8_1:74294478-74294497 | None:intergenic | 20.0% |
| !! | AAATTAATAGACATTCTGTT+TGG | - | chr8_1:74294739-74294758 | Msa1213930:CDS | 20.0% |
| !! | AAAAAAAATTGCATACACAA+GGG | + | chr8_1:74295091-74295110 | None:intergenic | 20.0% |
| !! | AAAAAAAAATTGCATACACA+AGG | + | chr8_1:74295092-74295111 | None:intergenic | 20.0% |
| !! | AATAGAGAAGAAAACTATTA+AGG | + | chr8_1:74295343-74295362 | None:intergenic | 20.0% |
| !! | TAGAAACATGAAATAGAAAT+CGG | + | chr8_1:74295457-74295476 | None:intergenic | 20.0% |
| !!! | TATTTTCTAAGATACTATTC+GGG | + | chr8_1:74295825-74295844 | None:intergenic | 20.0% |
| !!! | TTCTTTTAATGCATTGTTAT+AGG | - | chr8_1:74296105-74296124 | Msa1213930:intron | 20.0% |
| !! | AAACTAGAACTCTATATATT+AGG | - | chr8_1:74296422-74296441 | Msa1213930:intron | 20.0% |
| !!! | TAGACTTAAAAGTATTCATT+TGG | + | chr8_1:74296648-74296667 | None:intergenic | 20.0% |
| !!! | TGAATACTTTTAAGTCTATT+TGG | - | chr8_1:74296650-74296669 | Msa1213930:CDS | 20.0% |
| !! | CTTTTTAACATTTAAAAGGG+GGG | + | chr8_1:74294053-74294072 | None:intergenic | 25.0% |
| !! | GCTAACTTTATACAATTTTG+GGG | + | chr8_1:74294091-74294110 | None:intergenic | 25.0% |
| !!! | TTCAATTTTGAGGATCAAAT+TGG | - | chr8_1:74294190-74294209 | Msa1213930:three_prime_UTR | 25.0% |
| !!! | TCAATTTTGAGGATCAAATT+GGG | - | chr8_1:74294191-74294210 | Msa1213930:three_prime_UTR | 25.0% |
| ! | ATCTGTTCAAATCAAATCAT+GGG | + | chr8_1:74294254-74294273 | None:intergenic | 25.0% |
| ! | TATCTGTTCAAATCAAATCA+TGG | + | chr8_1:74294255-74294274 | None:intergenic | 25.0% |
| ! | AGTAACACTAATGTTATTCA+TGG | - | chr8_1:74294352-74294371 | Msa1213930:CDS | 25.0% |
| !!! | TTGAAGTTGATATACATCAT+TGG | + | chr8_1:74294390-74294409 | None:intergenic | 25.0% |
| ! | ATCTTCACATACTTAACAAA+GGG | + | chr8_1:74294662-74294681 | None:intergenic | 25.0% |
| ! | AATCTTCACATACTTAACAA+AGG | + | chr8_1:74294663-74294682 | None:intergenic | 25.0% |
| !! | GTTATTTAACTTTCCTCAAT+CGG | + | chr8_1:74294687-74294706 | None:intergenic | 25.0% |
| !! | TTAACTAGCTCTTATCATAT+TGG | + | chr8_1:74294983-74295002 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCGAAACA+GGG | - | chr8_1:74294999-74295018 | Msa1213930:intron | 25.0% |
| ! | AAACTACATATGTATTCCAA+TGG | + | chr8_1:74295032-74295051 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGTTGTGTAGG+TGG | - | chr8_1:74295138-74295157 | Msa1213930:intron | 25.0% |
| !!! | TCTTGAGTTGTGAAATATTT+TGG | - | chr8_1:74295485-74295504 | Msa1213930:CDS | 25.0% |
| ! | GCATTAAAAGAATATCATGA+TGG | + | chr8_1:74296097-74296116 | None:intergenic | 25.0% |
| !! | CTATCAAGTTTTTGCTTTAT+CGG | - | chr8_1:74296356-74296375 | Msa1213930:CDS | 25.0% |
| ! | GAACTCTATATATTAGGAAT+TGG | - | chr8_1:74296428-74296447 | Msa1213930:intron | 25.0% |
| ! | TGTAACTAGTGTATATATAG+AGG | - | chr8_1:74296541-74296560 | Msa1213930:intron | 25.0% |
| ! | GTAACTAGTGTATATATAGA+GGG | - | chr8_1:74296542-74296561 | Msa1213930:intron | 25.0% |
| !! | ACTTTATACAATTTTGGGGA+TGG | + | chr8_1:74294087-74294106 | None:intergenic | 30.0% |
| GTATAAAGTTAGCAATGTCA+TGG | - | chr8_1:74294098-74294117 | Msa1213930:intron | 30.0% | |
| ! | GATACACTACTTCAATTTTG+AGG | - | chr8_1:74294180-74294199 | Msa1213930:three_prime_UTR | 30.0% |
| ! | GCTAAGTTTTTACGTAGAAA+TGG | + | chr8_1:74294416-74294435 | None:intergenic | 30.0% |
| ! | ATGCAGTTATCAGAGTTTTT+AGG | - | chr8_1:74294445-74294464 | Msa1213930:CDS | 30.0% |
| GGGTATGTTTGGATAATAAT+TGG | + | chr8_1:74294518-74294537 | None:intergenic | 30.0% | |
| TTATTCACATAGGGTATGTT+TGG | + | chr8_1:74294529-74294548 | None:intergenic | 30.0% | |
| CCATTAGCATTATTCACATA+GGG | + | chr8_1:74294538-74294557 | None:intergenic | 30.0% | |
| TCCATTAGCATTATTCACAT+AGG | + | chr8_1:74294539-74294558 | None:intergenic | 30.0% | |
| TATGTGAATAATGCTAATGG+AGG | - | chr8_1:74294538-74294557 | Msa1213930:intron | 30.0% | |
| !! | TTAACAAAGGGAGTATTTCT+AGG | + | chr8_1:74294650-74294669 | None:intergenic | 30.0% |
| TTAATAGACATTCTGTTTGG+TGG | - | chr8_1:74294742-74294761 | Msa1213930:CDS | 30.0% | |
| ! | TCTTATTTGAGCTTATCTAC+TGG | - | chr8_1:74294779-74294798 | Msa1213930:CDS | 30.0% |
| AAAATATCCTGGAAATCGTA+TGG | + | chr8_1:74294884-74294903 | None:intergenic | 30.0% | |
| ! | GTTAAGTTGTTTATCGAAAC+AGG | - | chr8_1:74294998-74295017 | Msa1213930:intron | 30.0% |
| AATCAAAGACTTGCATCAAA+TGG | + | chr8_1:74295656-74295675 | None:intergenic | 30.0% | |
| ! | AATTGCGTTGGTAAATTACT+TGG | - | chr8_1:74295879-74295898 | Msa1213930:intron | 30.0% |
| TTACTTGGACAAATTCGTAA+CGG | - | chr8_1:74295894-74295913 | Msa1213930:intron | 30.0% | |
| AGTTTAATGCACACAATAGA+CGG | + | chr8_1:74296407-74296426 | None:intergenic | 30.0% | |
| CTAACTCTAAGTTAGTGAAT+AGG | - | chr8_1:74296468-74296487 | Msa1213930:intron | 30.0% | |
| !! | AAAAGTATTCATTTGGCATG+TGG | + | chr8_1:74296641-74296660 | None:intergenic | 30.0% |
| AGTTTATGAGAGTGAAGCTT+TGG | - | chr8_1:74294279-74294298 | Msa1213930:CDS | 35.0% | |
| TTTGTCCAAATCACTACTTC+TGG | + | chr8_1:74294323-74294342 | None:intergenic | 35.0% | |
| ! | AGTGATTTGGACAAATCAAG+TGG | - | chr8_1:74294328-74294347 | Msa1213930:CDS | 35.0% |
| ! | GTGATTTGGACAAATCAAGT+GGG | - | chr8_1:74294329-74294348 | Msa1213930:CDS | 35.0% |
| CCCTATGTGAATAATGCTAA+TGG | - | chr8_1:74294535-74294554 | Msa1213930:intron | 35.0% | |
| CTATATCTACATCCCATCTA+GGG | + | chr8_1:74294618-74294637 | None:intergenic | 35.0% | |
| TCTATATCTACATCCCATCT+AGG | + | chr8_1:74294619-74294638 | None:intergenic | 35.0% | |
| ! | TATGTGAAGATTACCGATTG+AGG | - | chr8_1:74294671-74294690 | Msa1213930:intron | 35.0% |
| ACTTATGAGACTGTTTGAGA+GGG | - | chr8_1:74294809-74294828 | Msa1213930:CDS | 35.0% | |
| TATGGAGTCAAGCTAAAACA+AGG | + | chr8_1:74294866-74294885 | None:intergenic | 35.0% | |
| ATCTAGATCAAGACAAGAAG+TGG | + | chr8_1:74295214-74295233 | None:intergenic | 35.0% | |
| CTTGATCTAGATAACATCCT+TGG | - | chr8_1:74295222-74295241 | Msa1213930:intron | 35.0% | |
| TGCAAAGAAGTGACTGAAAT+TGG | - | chr8_1:74295258-74295277 | Msa1213930:intron | 35.0% | |
| TATTTATTTAGGTGGAGTCC+CGG | - | chr8_1:74295392-74295411 | Msa1213930:CDS | 35.0% | |
| ! | GCATCGGTAAAACACAAATA+GGG | - | chr8_1:74295415-74295434 | Msa1213930:CDS | 35.0% |
| AGATACTGAAGGAAGCTTTA+TGG | - | chr8_1:74295699-74295718 | Msa1213930:intron | 35.0% | |
| !!! | GCATTTTAACTCCAAAAGCT+TGG | + | chr8_1:74295801-74295820 | None:intergenic | 35.0% |
| CTATACTGAACAAATTGCGT+TGG | - | chr8_1:74295867-74295886 | Msa1213930:intron | 35.0% | |
| !!! | CTTTATTTTCTTCCGCATTC+AGG | - | chr8_1:74296055-74296074 | Msa1213930:intron | 35.0% |
| ATTAAGCAATTGCCTGAATG+CGG | + | chr8_1:74296070-74296089 | None:intergenic | 35.0% | |
| GCTTGCAAAAAACTTCTCTT+TGG | - | chr8_1:74296234-74296253 | Msa1213930:intron | 35.0% | |
| TCACTAACTTAGAGTTAGAG+TGG | + | chr8_1:74296466-74296485 | None:intergenic | 35.0% | |
| AGTGTATATATAGAGGGATG+AGG | - | chr8_1:74296548-74296567 | Msa1213930:intron | 35.0% | |
| GGAAAAGTAACGAAAGAGAG+TGG | - | chr8_1:74293884-74293903 | Msa1213930:three_prime_UTR | 40.0% | |
| AAAGTAACGAAAGAGAGTGG+TGG | - | chr8_1:74293887-74293906 | Msa1213930:three_prime_UTR | 40.0% | |
| AATCGGAATGCTACCAATCT+CGG | - | chr8_1:74293917-74293936 | Msa1213930:three_prime_UTR | 40.0% | |
| TGAAAATGAAACCTCGAGCA+AGG | + | chr8_1:74294016-74294035 | None:intergenic | 40.0% | |
| TGCAACCAGAAGTAGTGATT+TGG | - | chr8_1:74294315-74294334 | Msa1213930:CDS | 40.0% | |
| GGTTAAGCACGAGAATCAAT+TGG | + | chr8_1:74294597-74294616 | None:intergenic | 40.0% | |
| ! | TTCTGTTTGGTGGACATGTT+TGG | - | chr8_1:74294752-74294771 | Msa1213930:CDS | 40.0% |
| CACTTATGAGACTGTTTGAG+AGG | - | chr8_1:74294808-74294827 | Msa1213930:CDS | 40.0% | |
| AGACTGTTTGAGAGGGTTTA+TGG | - | chr8_1:74294816-74294835 | Msa1213930:CDS | 40.0% | |
| ! | GCTGACTTCACAAAATATCC+TGG | + | chr8_1:74294895-74294914 | None:intergenic | 40.0% |
| GATCTAGATAACATCCTTGG+TGG | - | chr8_1:74295225-74295244 | Msa1213930:intron | 40.0% | |
| TAGATAACATCCTTGGTGGA+GGG | - | chr8_1:74295229-74295248 | Msa1213930:CDS | 40.0% | |
| ATTGGTGAGTGACTGTTTGT+TGG | - | chr8_1:74295276-74295295 | Msa1213930:intron | 40.0% | |
| ATTTATTTAGGTGGAGTCCC+GGG | - | chr8_1:74295393-74295412 | Msa1213930:CDS | 40.0% | |
| ! | ATTTGTGTTTTACCGATGCC+CGG | + | chr8_1:74295414-74295433 | None:intergenic | 40.0% |
| !! | GGCATCGGTAAAACACAAAT+AGG | - | chr8_1:74295414-74295433 | Msa1213930:CDS | 40.0% |
| GTTCAGATTCCCTTAGACTA+TGG | - | chr8_1:74295562-74295581 | Msa1213930:intron | 40.0% | |
| GCATGATACTCAGATACTGA+AGG | - | chr8_1:74295688-74295707 | Msa1213930:intron | 40.0% | |
| ATATAGCCACCACTTTCACA+AGG | - | chr8_1:74295771-74295790 | Msa1213930:intron | 40.0% | |
| CTTGGTTATCCTTGTGAAAG+TGG | + | chr8_1:74295783-74295802 | None:intergenic | 40.0% | |
| ! | CACAAGGATAACCAAGCTTT+TGG | - | chr8_1:74295787-74295806 | Msa1213930:intron | 40.0% |
| TTCTCACTGTACAATGCCTT+GGG | - | chr8_1:74296012-74296031 | Msa1213930:intron | 40.0% | |
| ! | ATGAGACTAGTTACAACCCA+AGG | + | chr8_1:74296031-74296050 | None:intergenic | 40.0% |
| CCATATCATCAAAGTCTTGG+CGG | + | chr8_1:74296168-74296187 | None:intergenic | 40.0% | |
| GAGCCATATCATCAAAGTCT+TGG | + | chr8_1:74296171-74296190 | None:intergenic | 40.0% | |
| ! | ACTTTGATGATATGGCTCTC+CGG | - | chr8_1:74296173-74296192 | Msa1213930:intron | 40.0% |
| TTTCACCAAGTAATCGAGTC+CGG | + | chr8_1:74296195-74296214 | None:intergenic | 40.0% | |
| ! | TCTTTGATAGCAGTGACATG+AGG | - | chr8_1:74296311-74296330 | Msa1213930:CDS | 40.0% |
| GGCGAAAATGAAGAAGAGTG+TGG | - | chr8_1:74293863-74293882 | Msa1213930:three_prime_UTR | 45.0% | |
| !! | AGAGTGGTGGACATGGAAAT+CGG | - | chr8_1:74293900-74293919 | Msa1213930:three_prime_UTR | 45.0% |
| TTCTCGTGCTTAACCCTAGA+TGG | - | chr8_1:74294602-74294621 | Msa1213930:intron | 45.0% | |
| TCTCGTGCTTAACCCTAGAT+GGG | - | chr8_1:74294603-74294622 | Msa1213930:intron | 45.0% | |
| TTTGTCATTGAGCACACGCA+TGG | + | chr8_1:74294721-74294740 | None:intergenic | 45.0% | |
| CTTGACTCCATACGATTTCC+AGG | - | chr8_1:74294874-74294893 | Msa1213930:CDS | 45.0% | |
| GAAACAGGGTCTCTTACCAT+TGG | - | chr8_1:74295013-74295032 | Msa1213930:intron | 45.0% | |
| TGCTTGGGATATGCTCAATG+AGG | - | chr8_1:74295167-74295186 | Msa1213930:intron | 45.0% | |
| CTAGATAACATCCTTGGTGG+AGG | - | chr8_1:74295228-74295247 | Msa1213930:CDS | 45.0% | |
| TGCAATTAATCCCTCCACCA+AGG | + | chr8_1:74295242-74295261 | None:intergenic | 45.0% | |
| ! | TTTGTGTTTTACCGATGCCC+GGG | + | chr8_1:74295413-74295432 | None:intergenic | 45.0% |
| CAGATTCCCTTAGACTATGG+TGG | - | chr8_1:74295565-74295584 | Msa1213930:intron | 45.0% | |
| TGTATATTGCCTTCCCACCT+AGG | + | chr8_1:74295591-74295610 | None:intergenic | 45.0% | |
| GGTGGGAAGGCAATATACAT+CGG | - | chr8_1:74295592-74295611 | Msa1213930:intron | 45.0% | |
| GGTTATCCTTGTGAAAGTGG+TGG | + | chr8_1:74295780-74295799 | None:intergenic | 45.0% | |
| !! | CAAGGCATTGTACAGTGAGA+AGG | + | chr8_1:74296013-74296032 | None:intergenic | 45.0% |
| CTTCTCACTGTACAATGCCT+TGG | - | chr8_1:74296011-74296030 | Msa1213930:intron | 45.0% | |
| ! | CCGCCAAGACTTTGATGATA+TGG | - | chr8_1:74296165-74296184 | Msa1213930:intron | 45.0% |
| AATAGACGGAATCAGCGGTA+CGG | + | chr8_1:74296393-74296412 | None:intergenic | 45.0% | |
| CACACAATAGACGGAATCAG+CGG | + | chr8_1:74296398-74296417 | None:intergenic | 45.0% | |
| TAGAGTTAGAGTGGCTATGC+AGG | + | chr8_1:74296457-74296476 | None:intergenic | 45.0% | |
| ! | AGGTCAAGATGTGGAAGTAC+AGG | + | chr8_1:74296575-74296594 | None:intergenic | 45.0% |
| TGTACTTCCACATCTTGACC+TGG | - | chr8_1:74296574-74296593 | Msa1213930:intron | 45.0% | |
| TTTGGCATGTGGCATTGCTT+AGG | + | chr8_1:74296630-74296649 | None:intergenic | 45.0% | |
| !! | ACGAAAGAGAGTGGTGGACA+TGG | - | chr8_1:74293893-74293912 | Msa1213930:three_prime_UTR | 50.0% |
| CCTCTCTTTGATGCCGAGAT+TGG | + | chr8_1:74293933-74293952 | None:intergenic | 50.0% | |
| CCAATCTCGGCATCAAAGAG+AGG | - | chr8_1:74293930-74293949 | Msa1213930:three_prime_UTR | 50.0% | |
| AGAGGAAAGCTCTTAGCAGC+TGG | - | chr8_1:74293948-74293967 | Msa1213930:three_prime_UTR | 50.0% | |
| ! | TGGAAGTGCGAAGAATGGAG+TGG | + | chr8_1:74293986-74294005 | None:intergenic | 50.0% |
| ! | AGTGGTGGAAGTGCGAAGAA+TGG | + | chr8_1:74293991-74294010 | None:intergenic | 50.0% |
| TGTAGGTGGTCAGACTGCTT+GGG | - | chr8_1:74295152-74295171 | Msa1213930:intron | 50.0% | |
| TGCGTAGTGTTTGCTTCTGC+AGG | - | chr8_1:74295521-74295540 | Msa1213930:intron | 50.0% | |
| CCTAGGCCACCATAGTCTAA+GGG | + | chr8_1:74295574-74295593 | None:intergenic | 50.0% | |
| ACCTAGGCCACCATAGTCTA+AGG | + | chr8_1:74295575-74295594 | None:intergenic | 50.0% | |
| TTAGACTATGGTGGCCTAGG+TGG | - | chr8_1:74295574-74295593 | Msa1213930:intron | 50.0% | |
| TAGACTATGGTGGCCTAGGT+GGG | - | chr8_1:74295575-74295594 | Msa1213930:intron | 50.0% | |
| CATCAAAGTCTTGGCGGAAG+TGG | + | chr8_1:74296162-74296181 | None:intergenic | 50.0% | |
| ACTTCCACATCTTGACCTGG+TGG | - | chr8_1:74296577-74296596 | Msa1213930:intron | 50.0% | |
| ACAACCACCAGGTCAAGATG+TGG | + | chr8_1:74296584-74296603 | None:intergenic | 50.0% | |
| ACATCTTGACCTGGTGGTTG+TGG | - | chr8_1:74296583-74296602 | Msa1213930:intron | 50.0% | |
| TCACAGATTCCACAACCACC+AGG | + | chr8_1:74296595-74296614 | None:intergenic | 50.0% | |
| GGCATTGCTTAGGTGGATGA+CGG | + | chr8_1:74296620-74296639 | None:intergenic | 50.0% | |
| GAAACCTCGAGCAAGGTGAG+TGG | + | chr8_1:74294009-74294028 | None:intergenic | 55.0% | |
| GTGTAGGTGGTCAGACTGCT+TGG | - | chr8_1:74295151-74295170 | Msa1213930:intron | 55.0% | |
| CCCTTAGACTATGGTGGCCT+AGG | - | chr8_1:74295571-74295590 | Msa1213930:intron | 55.0% | |
| GCTCTCCGGACTCGATTACT+TGG | - | chr8_1:74296187-74296206 | Msa1213930:intron | 55.0% | |
| GGCATGTGGCATTGCTTAGG+TGG | + | chr8_1:74296627-74296646 | None:intergenic | 55.0% | |
| TCCACCACTCACCTTGCTCG+AGG | - | chr8_1:74294002-74294021 | Msa1213930:three_prime_UTR | 60.0% | |
| ACCTCGAGCAAGGTGAGTGG+TGG | + | chr8_1:74294006-74294025 | None:intergenic | 60.0% | |
| TTAGGTGGAGTCCCGGGCAT+CGG | - | chr8_1:74295399-74295418 | Msa1213930:CDS | 60.0% | |
| CTATGGTGGCCTAGGTGGGA+AGG | - | chr8_1:74295579-74295598 | Msa1213930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 74293856 | 74296808 | 74293856 | ID=Msa1213930;Name=Msa1213930 |
| chr8_1 | mRNA | 74293856 | 74296808 | 74293856 | ID=Msa1213930-mRNA-1;Parent=Msa1213930;Name=Msa1213930-mRNA-1;_AED=0.20;_eAED=0.20;_QI=56|0.85|0.87|1|0.85|0.75|8|349|318 |
| chr8_1 | exon | 74293856 | 74294065 | 74293856 | ID=Msa1213930-mRNA-1:exon:25467;Parent=Msa1213930-mRNA-1 |
| chr8_1 | exon | 74294102 | 74294537 | 74294102 | ID=Msa1213930-mRNA-1:exon:25466;Parent=Msa1213930-mRNA-1 |
| chr8_1 | exon | 74294737 | 74294963 | 74294737 | ID=Msa1213930-mRNA-1:exon:25465;Parent=Msa1213930-mRNA-1 |
| chr8_1 | exon | 74295051 | 74295121 | 74295051 | ID=Msa1213930-mRNA-1:exon:25464;Parent=Msa1213930-mRNA-1 |
| chr8_1 | exon | 74295228 | 74295261 | 74295228 | ID=Msa1213930-mRNA-1:exon:25463;Parent=Msa1213930-mRNA-1 |
| chr8_1 | exon | 74295385 | 74295507 | 74295385 | ID=Msa1213930-mRNA-1:exon:25462;Parent=Msa1213930-mRNA-1 |
| chr8_1 | exon | 74296291 | 74296383 | 74296291 | ID=Msa1213930-mRNA-1:exon:25461;Parent=Msa1213930-mRNA-1 |
| chr8_1 | exon | 74296641 | 74296808 | 74296641 | ID=Msa1213930-mRNA-1:exon:25460;Parent=Msa1213930-mRNA-1 |
| chr8_1 | five_prime_UTR | 74296753 | 74296808 | 74296753 | ID=Msa1213930-mRNA-1:five_prime_utr;Parent=Msa1213930-mRNA-1 |
| chr8_1 | CDS | 74296641 | 74296752 | 74296641 | ID=Msa1213930-mRNA-1:cds;Parent=Msa1213930-mRNA-1 |
| chr8_1 | CDS | 74296291 | 74296383 | 74296291 | ID=Msa1213930-mRNA-1:cds;Parent=Msa1213930-mRNA-1 |
| chr8_1 | CDS | 74295385 | 74295507 | 74295385 | ID=Msa1213930-mRNA-1:cds;Parent=Msa1213930-mRNA-1 |
| chr8_1 | CDS | 74295228 | 74295261 | 74295228 | ID=Msa1213930-mRNA-1:cds;Parent=Msa1213930-mRNA-1 |
| chr8_1 | CDS | 74295051 | 74295121 | 74295051 | ID=Msa1213930-mRNA-1:cds;Parent=Msa1213930-mRNA-1 |
| chr8_1 | CDS | 74294737 | 74294963 | 74294737 | ID=Msa1213930-mRNA-1:cds;Parent=Msa1213930-mRNA-1 |
| chr8_1 | CDS | 74294241 | 74294537 | 74294241 | ID=Msa1213930-mRNA-1:cds;Parent=Msa1213930-mRNA-1 |
| chr8_1 | three_prime_UTR | 74294102 | 74294240 | 74294102 | ID=Msa1213930-mRNA-1:three_prime_utr;Parent=Msa1213930-mRNA-1 |
| chr8_1 | three_prime_UTR | 74293856 | 74294065 | 74293856 | ID=Msa1213930-mRNA-1:three_prime_utr;Parent=Msa1213930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
