Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215370 | XP_003609409.1 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1 | 224 | 1.81e-162 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215370 | sp|Q9LFP1|VA713_ARATH | 64.286 | 224 | 77 | 2 | 1 | 224 | 1 | 221 | 1.02e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215370 | G7JFD0 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1 | 224 | 8.63e-163 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036430 | Msa1215370 | 0.807321 | 5.350984e-50 | -8.615850e-47 |
| Msa1215370 | Msa1332120 | 0.953104 | 5.706993e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215370 | MtrunA17_Chr4g0064371 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1 | 224 | 1.66e-166 | 457 |
| Msa1215370 | MtrunA17_Chr5g0441741 | 63.229 | 223 | 78 | 1 | 1 | 223 | 1 | 219 | 3.34e-108 | 310 |
| Msa1215370 | MtrunA17_Chr4g0026121 | 51.802 | 222 | 103 | 1 | 1 | 222 | 1 | 218 | 1.55e-84 | 250 |
| Msa1215370 | MtrunA17_Chr1g0210521 | 32.218 | 239 | 131 | 5 | 2 | 214 | 5 | 238 | 1.72e-39 | 135 |
| Msa1215370 | MtrunA17_Chr1g0169861 | 31.944 | 216 | 140 | 3 | 3 | 216 | 56 | 266 | 1.11e-38 | 134 |
| Msa1215370 | MtrunA17_Chr7g0237561 | 33.505 | 194 | 122 | 3 | 3 | 194 | 6 | 194 | 3.34e-36 | 127 |
| Msa1215370 | MtrunA17_Chr4g0010271 | 31.944 | 216 | 140 | 3 | 3 | 216 | 6 | 216 | 1.52e-35 | 125 |
| Msa1215370 | MtrunA17_Chr2g0291651 | 31.443 | 194 | 126 | 3 | 3 | 194 | 10 | 198 | 2.20e-33 | 119 |
| Msa1215370 | MtrunA17_Chr4g0043521 | 30.256 | 195 | 127 | 4 | 3 | 194 | 8 | 196 | 3.74e-32 | 116 |
| Msa1215370 | MtrunA17_Chr2g0296021 | 26.977 | 215 | 150 | 3 | 4 | 216 | 7 | 216 | 5.89e-31 | 113 |
| Msa1215370 | MtrunA17_Chr7g0237521 | 27.835 | 194 | 133 | 3 | 3 | 194 | 6 | 194 | 3.86e-25 | 98.2 |
| Msa1215370 | MtrunA17_Chr1g0169851 | 33.824 | 136 | 73 | 3 | 70 | 188 | 19 | 154 | 1.48e-18 | 79.3 |
| Msa1215370 | MtrunA17_Chr4g0010211 | 39.048 | 105 | 60 | 3 | 70 | 171 | 7 | 110 | 1.78e-17 | 75.1 |
| Msa1215370 | MtrunA17_Chr4g0058841 | 24.516 | 155 | 109 | 2 | 28 | 182 | 45 | 191 | 1.81e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215370 | AT5G11150.1 | 64.286 | 224 | 77 | 2 | 1 | 224 | 1 | 221 | 1.04e-110 | 317 |
| Msa1215370 | AT5G11150.2 | 64.574 | 223 | 76 | 2 | 1 | 223 | 1 | 220 | 4.50e-110 | 315 |
| Msa1215370 | AT4G32150.1 | 65.766 | 222 | 72 | 1 | 1 | 222 | 1 | 218 | 1.23e-106 | 306 |
| Msa1215370 | AT2G25340.1 | 63.964 | 222 | 76 | 1 | 1 | 222 | 1 | 218 | 5.99e-101 | 292 |
| Msa1215370 | AT5G22360.1 | 50.450 | 222 | 107 | 1 | 1 | 222 | 1 | 219 | 2.46e-86 | 255 |
| Msa1215370 | AT1G04760.2 | 32.870 | 216 | 138 | 3 | 3 | 216 | 6 | 216 | 8.18e-38 | 131 |
| Msa1215370 | AT1G04760.1 | 32.870 | 216 | 138 | 3 | 3 | 216 | 6 | 216 | 8.18e-38 | 131 |
| Msa1215370 | AT3G54300.3 | 32.174 | 230 | 127 | 4 | 2 | 210 | 5 | 226 | 1.01e-37 | 132 |
| Msa1215370 | AT3G54300.2 | 32.174 | 230 | 127 | 4 | 2 | 210 | 5 | 226 | 1.01e-37 | 132 |
| Msa1215370 | AT3G54300.1 | 32.174 | 230 | 127 | 4 | 2 | 210 | 5 | 226 | 1.01e-37 | 132 |
| Msa1215370 | AT1G04750.1 | 31.481 | 216 | 141 | 3 | 3 | 216 | 6 | 216 | 2.66e-34 | 122 |
| Msa1215370 | AT2G32670.1 | 32.474 | 194 | 124 | 3 | 3 | 194 | 71 | 259 | 6.68e-34 | 123 |
| Msa1215370 | AT2G33120.1 | 31.443 | 194 | 126 | 3 | 3 | 194 | 6 | 194 | 2.51e-33 | 120 |
| Msa1215370 | AT2G33120.2 | 29.703 | 202 | 127 | 4 | 3 | 194 | 6 | 202 | 4.29e-30 | 111 |
| Msa1215370 | AT4G15780.1 | 29.508 | 183 | 116 | 4 | 4 | 184 | 7 | 178 | 2.18e-23 | 93.2 |
| Msa1215370 | AT2G33110.1 | 29.381 | 194 | 126 | 4 | 3 | 194 | 6 | 190 | 6.94e-23 | 92.8 |
| Msa1215370 | AT2G33110.2 | 32.099 | 162 | 103 | 3 | 3 | 162 | 6 | 162 | 7.21e-22 | 89.4 |
| Msa1215370 | AT1G04750.2 | 31.884 | 138 | 92 | 2 | 81 | 216 | 1 | 138 | 1.81e-18 | 79.0 |
| Msa1215370 | AT1G04750.4 | 31.884 | 138 | 92 | 2 | 81 | 216 | 1 | 138 | 1.81e-18 | 79.0 |
| Msa1215370 | AT1G04750.3 | 31.884 | 138 | 92 | 2 | 81 | 216 | 1 | 138 | 1.81e-18 | 79.0 |
| Msa1215370 | AT5G58060.1 | 24.627 | 134 | 99 | 1 | 49 | 182 | 60 | 191 | 5.61e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTCATACTTGTATTTAT+TGG | 0.232393 | 8_1:+76614225 | Msa1215370:three_prime_UTR |
| GTTGACCCAGTATACATTAT+TGG | 0.240608 | 8_1:-76614192 | None:intergenic |
| TATTCATACTTGTATTTATT+GGG | 0.249999 | 8_1:+76614226 | Msa1215370:three_prime_UTR |
| GGCAAGGGGACAGGTTGTTT+TGG | 0.253676 | 8_1:+76613090 | Msa1215370:CDS |
| TATTAGTCCCTTGATTAATC+TGG | 0.318783 | 8_1:-76613168 | None:intergenic |
| AAACGTGCACAAGCCTAAAA+TGG | 0.328667 | 8_1:-76614260 | None:intergenic |
| ATATCTTCAAGAAATGAAAA+TGG | 0.333891 | 8_1:-76613483 | None:intergenic |
| CGGTTTAATCTGTCAGCATT+TGG | 0.337061 | 8_1:-76613621 | None:intergenic |
| TGGACTCACGGTTCTTTGTA+TGG | 0.360279 | 8_1:+76613255 | Msa1215370:CDS |
| GAATTCATCATTCATTGTAT+AGG | 0.373894 | 8_1:-76613556 | None:intergenic |
| ACATTTGGTGGAGTAATGTT+AGG | 0.390510 | 8_1:+76613937 | Msa1215370:CDS |
| TTCAGTTCGTTTCAAAAGAC+AGG | 0.411093 | 8_1:+76613896 | Msa1215370:CDS |
| GTTGGAGAGAGGTGGTCGTT+TGG | 0.415150 | 8_1:+76613836 | Msa1215370:CDS |
| ATCAATATGGGGATATTGTA+TGG | 0.437966 | 8_1:+76613061 | Msa1215370:exon |
| CTCAATGTTATCAATCATAA+CGG | 0.460143 | 8_1:-76613808 | None:intergenic |
| TGGAATGGTGGCAAGGGGAC+AGG | 0.468795 | 8_1:+76613081 | Msa1215370:CDS |
| ATACTTGCATTTATGTGTCA+TGG | 0.486797 | 8_1:+76614090 | Msa1215370:CDS |
| ATACTTAACCAGATTAATCA+AGG | 0.489039 | 8_1:+76613160 | Msa1215370:CDS |
| TCATCATTCATTGTATAGGC+AGG | 0.492044 | 8_1:-76613552 | None:intergenic |
| AGGTGGTCGTTTGGAAATGC+TGG | 0.511827 | 8_1:+76613845 | Msa1215370:CDS |
| ATTGTATGGAATGGTGGCAA+GGG | 0.521454 | 8_1:+76613075 | Msa1215370:CDS |
| ATTGAGAAAGTGTTGGAGAG+AGG | 0.527753 | 8_1:+76613825 | Msa1215370:CDS |
| CTCCAGCACGAAGTCAGAAA+AGG | 0.530190 | 8_1:-76614114 | None:intergenic |
| TATTGTATGGAATGGTGGCA+AGG | 0.543226 | 8_1:+76613074 | Msa1215370:CDS |
| AAGGGTCCTCAGCCAACAGA+TGG | 0.550516 | 8_1:+76613581 | Msa1215370:CDS |
| CAATGAATGATGAATTCTCA+AGG | 0.553713 | 8_1:+76613562 | Msa1215370:CDS |
| TGTATGGCTGATGAAGCATT+CGG | 0.564914 | 8_1:+76613271 | Msa1215370:CDS |
| TAGAGTAATAATCCATCTGT+TGG | 0.566521 | 8_1:-76613593 | None:intergenic |
| GGGGATATTGTATGGAATGG+TGG | 0.567746 | 8_1:+76613069 | Msa1215370:CDS |
| TTTCATGTTAGGAGAACCGA+TGG | 0.574207 | 8_1:+76613235 | Msa1215370:CDS |
| TGATAACATTGAGAAAGTGT+TGG | 0.575571 | 8_1:+76613818 | Msa1215370:CDS |
| TTTGACCAATAATGTATACT+GGG | 0.576344 | 8_1:+76614187 | Msa1215370:three_prime_UTR |
| GACAGATTAAACCGTCTCAA+AGG | 0.583346 | 8_1:+76613630 | Msa1215370:CDS |
| AGGAGCTGAAAGAATTGCAC+GGG | 0.584676 | 8_1:-76613532 | None:intergenic |
| GAGTCATTTCACCTTTGAGA+CGG | 0.596112 | 8_1:-76613641 | None:intergenic |
| AATAATCCATCTGTTGGCTG+AGG | 0.597408 | 8_1:-76613587 | None:intergenic |
| TATGGGGATATTGTATGGAA+TGG | 0.597713 | 8_1:+76613066 | Msa1215370:exon |
| GTGCTGGAGATAAGCTCTCA+AGG | 0.604752 | 8_1:+76614128 | Msa1215370:exon |
| TAATCTGTCAGCATTTGGAT+CGG | 0.609095 | 8_1:-76613616 | None:intergenic |
| ACAAAGAACCGTGAGTCCAT+CGG | 0.624255 | 8_1:-76613251 | None:intergenic |
| AATGAATGATGAATTCTCAA+GGG | 0.630979 | 8_1:+76613563 | Msa1215370:CDS |
| TCTCAAAGGTGAAATGACTC+AGG | 0.630982 | 8_1:+76613644 | Msa1215370:CDS |
| CAGGAGCTGAAAGAATTGCA+CGG | 0.634803 | 8_1:-76613533 | None:intergenic |
| TTGTATGGAATGGTGGCAAG+GGG | 0.640525 | 8_1:+76613076 | Msa1215370:CDS |
| GAGAAAGTGTTGGAGAGAGG+TGG | 0.644427 | 8_1:+76613828 | Msa1215370:CDS |
| TAGGAGAACCGATGGACTCA+CGG | 0.645185 | 8_1:+76613243 | Msa1215370:CDS |
| TACTTAACCAGATTAATCAA+GGG | 0.658304 | 8_1:+76613161 | Msa1215370:CDS |
| AAGTATAATATAAAAGACAA+TGG | 0.661950 | 8_1:-76614073 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACACAATCAATAAAAATAA+GGG | - | chr8_1:76613322-76613341 | None:intergenic | 15.0% |
| !! | AAACACAATCAATAAAAATA+AGG | - | chr8_1:76613323-76613342 | None:intergenic | 15.0% |
| !!! | TTATTTTTATTGATTGTGTT+TGG | + | chr8_1:76613322-76613341 | Msa1215370:intron | 15.0% |
| !! | CATATCTTAATGTAAATAAA+TGG | - | chr8_1:76613732-76613751 | None:intergenic | 15.0% |
| !! | ATCATACAACAAATATATTA+AGG | - | chr8_1:76613769-76613788 | None:intergenic | 15.0% |
| !! | GTTGTATGATAATTATATAT+AGG | + | chr8_1:76613779-76613798 | Msa1215370:intron | 15.0% |
| !! | AAGTATAATATAAAAGACAA+TGG | - | chr8_1:76614076-76614095 | None:intergenic | 15.0% |
| !! | ATATTCATACTTGTATTTAT+TGG | + | chr8_1:76614225-76614244 | Msa1215370:three_prime_UTR | 15.0% |
| !! | TATTCATACTTGTATTTATT+GGG | + | chr8_1:76614226-76614245 | Msa1215370:three_prime_UTR | 15.0% |
| !! | AACACAATCAATAAAAATAA+GGG | - | chr8_1:76613322-76613341 | None:intergenic | 15.0% |
| !! | AAACACAATCAATAAAAATA+AGG | - | chr8_1:76613323-76613342 | None:intergenic | 15.0% |
| !!! | TTATTTTTATTGATTGTGTT+TGG | + | chr8_1:76613322-76613341 | Msa1215370:intron | 15.0% |
| !! | CATATCTTAATGTAAATAAA+TGG | - | chr8_1:76613732-76613751 | None:intergenic | 15.0% |
| !! | ATCATACAACAAATATATTA+AGG | - | chr8_1:76613769-76613788 | None:intergenic | 15.0% |
| !! | GTTGTATGATAATTATATAT+AGG | + | chr8_1:76613779-76613798 | Msa1215370:intron | 15.0% |
| !! | AAGTATAATATAAAAGACAA+TGG | - | chr8_1:76614076-76614095 | None:intergenic | 15.0% |
| !! | ATATTCATACTTGTATTTAT+TGG | + | chr8_1:76614225-76614244 | Msa1215370:three_prime_UTR | 15.0% |
| !! | TATTCATACTTGTATTTATT+GGG | + | chr8_1:76614226-76614245 | Msa1215370:three_prime_UTR | 15.0% |
| !!! | TTTTGAAAGTTTAAGGTAAA+GGG | - | chr8_1:76613003-76613022 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAGTTTAAGGTAA+AGG | - | chr8_1:76613004-76613023 | None:intergenic | 20.0% |
| !!! | TGAGATTTTTTGAAAGTTTA+AGG | - | chr8_1:76613010-76613029 | None:intergenic | 20.0% |
| !! | TTAGCATACAACATAATATT+TGG | - | chr8_1:76613384-76613403 | None:intergenic | 20.0% |
| !! | ATATCTTCAAGAAATGAAAA+TGG | - | chr8_1:76613486-76613505 | None:intergenic | 20.0% |
| !! | GTCGATATAAAAATAACATT+TGG | + | chr8_1:76613922-76613941 | Msa1215370:CDS | 20.0% |
| !! | GATATAAAAATAACATTTGG+TGG | + | chr8_1:76613925-76613944 | Msa1215370:CDS | 20.0% |
| !!! | TTTTGAAAGTTTAAGGTAAA+GGG | - | chr8_1:76613003-76613022 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAGTTTAAGGTAA+AGG | - | chr8_1:76613004-76613023 | None:intergenic | 20.0% |
| !!! | TGAGATTTTTTGAAAGTTTA+AGG | - | chr8_1:76613010-76613029 | None:intergenic | 20.0% |
| !! | TTAGCATACAACATAATATT+TGG | - | chr8_1:76613384-76613403 | None:intergenic | 20.0% |
| !! | ATATCTTCAAGAAATGAAAA+TGG | - | chr8_1:76613486-76613505 | None:intergenic | 20.0% |
| !! | GTCGATATAAAAATAACATT+TGG | + | chr8_1:76613922-76613941 | Msa1215370:CDS | 20.0% |
| !! | GATATAAAAATAACATTTGG+TGG | + | chr8_1:76613925-76613944 | Msa1215370:CDS | 20.0% |
| ! | ATACTTAACCAGATTAATCA+AGG | + | chr8_1:76613160-76613179 | Msa1215370:CDS | 25.0% |
| ! | TACTTAACCAGATTAATCAA+GGG | + | chr8_1:76613161-76613180 | Msa1215370:CDS | 25.0% |
| !! | ATCGTTATGTTTTTCATGTT+AGG | + | chr8_1:76613224-76613243 | Msa1215370:CDS | 25.0% |
| !! | TATTGATTGTGTTTGGAATT+TGG | + | chr8_1:76613329-76613348 | Msa1215370:intron | 25.0% |
| ! | GAATTCATCATTCATTGTAT+AGG | - | chr8_1:76613559-76613578 | None:intergenic | 25.0% |
| ! | AATGAATGATGAATTCTCAA+GGG | + | chr8_1:76613563-76613582 | Msa1215370:CDS | 25.0% |
| ! | TATGAAAAAAAGTTGAATGC+TGG | + | chr8_1:76613695-76613714 | Msa1215370:intron | 25.0% |
| ! | CTCAATGTTATCAATCATAA+CGG | - | chr8_1:76613811-76613830 | None:intergenic | 25.0% |
| ! | AAGTGTCAATTTCTAAATGT+TGG | + | chr8_1:76613967-76613986 | Msa1215370:intron | 25.0% |
| ! | AGTGTCAATTTCTAAATGTT+GGG | + | chr8_1:76613968-76613987 | Msa1215370:intron | 25.0% |
| ! | ATATCTATCTTCTTTATGCA+GGG | + | chr8_1:76614029-76614048 | Msa1215370:intron | 25.0% |
| !! | TTTTGACCAATAATGTATAC+TGG | + | chr8_1:76614186-76614205 | Msa1215370:three_prime_UTR | 25.0% |
| ! | TTTGACCAATAATGTATACT+GGG | + | chr8_1:76614187-76614206 | Msa1215370:three_prime_UTR | 25.0% |
| ! | ATACTTAACCAGATTAATCA+AGG | + | chr8_1:76613160-76613179 | Msa1215370:CDS | 25.0% |
| ! | TACTTAACCAGATTAATCAA+GGG | + | chr8_1:76613161-76613180 | Msa1215370:CDS | 25.0% |
| !! | ATCGTTATGTTTTTCATGTT+AGG | + | chr8_1:76613224-76613243 | Msa1215370:CDS | 25.0% |
| !! | TATTGATTGTGTTTGGAATT+TGG | + | chr8_1:76613329-76613348 | Msa1215370:intron | 25.0% |
| ! | GAATTCATCATTCATTGTAT+AGG | - | chr8_1:76613559-76613578 | None:intergenic | 25.0% |
| ! | AATGAATGATGAATTCTCAA+GGG | + | chr8_1:76613563-76613582 | Msa1215370:CDS | 25.0% |
| ! | TATGAAAAAAAGTTGAATGC+TGG | + | chr8_1:76613695-76613714 | Msa1215370:intron | 25.0% |
| ! | CTCAATGTTATCAATCATAA+CGG | - | chr8_1:76613811-76613830 | None:intergenic | 25.0% |
| ! | AAGTGTCAATTTCTAAATGT+TGG | + | chr8_1:76613967-76613986 | Msa1215370:intron | 25.0% |
| ! | AGTGTCAATTTCTAAATGTT+GGG | + | chr8_1:76613968-76613987 | Msa1215370:intron | 25.0% |
| ! | ATATCTATCTTCTTTATGCA+GGG | + | chr8_1:76614029-76614048 | Msa1215370:intron | 25.0% |
| !! | TTTTGACCAATAATGTATAC+TGG | + | chr8_1:76614186-76614205 | Msa1215370:three_prime_UTR | 25.0% |
| ! | TTTGACCAATAATGTATACT+GGG | + | chr8_1:76614187-76614206 | Msa1215370:three_prime_UTR | 25.0% |
| ATCAATATGGGGATATTGTA+TGG | + | chr8_1:76613061-76613080 | Msa1215370:exon | 30.0% | |
| TATTAGTCCCTTGATTAATC+TGG | - | chr8_1:76613171-76613190 | None:intergenic | 30.0% | |
| ! | ATTGTGTTTGGAATTTGGAT+TGG | + | chr8_1:76613334-76613353 | Msa1215370:intron | 30.0% |
| TTCACACATAACATTTGTTC+AGG | - | chr8_1:76613446-76613465 | None:intergenic | 30.0% | |
| CAATGAATGATGAATTCTCA+AGG | + | chr8_1:76613562-76613581 | Msa1215370:CDS | 30.0% | |
| TAGAGTAATAATCCATCTGT+TGG | - | chr8_1:76613596-76613615 | None:intergenic | 30.0% | |
| ! | TGATAACATTGAGAAAGTGT+TGG | + | chr8_1:76613818-76613837 | Msa1215370:CDS | 30.0% |
| GTGTCAATTTCTAAATGTTG+GGG | + | chr8_1:76613969-76613988 | Msa1215370:intron | 30.0% | |
| CATATCTATCTTCTTTATGC+AGG | + | chr8_1:76614028-76614047 | Msa1215370:intron | 30.0% | |
| ATACTTGCATTTATGTGTCA+TGG | + | chr8_1:76614090-76614109 | Msa1215370:CDS | 30.0% | |
| ! | GGATACAATGTTACCATTTT+AGG | + | chr8_1:76614247-76614266 | Msa1215370:three_prime_UTR | 30.0% |
| ATCAATATGGGGATATTGTA+TGG | + | chr8_1:76613061-76613080 | Msa1215370:exon | 30.0% | |
| TATTAGTCCCTTGATTAATC+TGG | - | chr8_1:76613171-76613190 | None:intergenic | 30.0% | |
| ! | ATTGTGTTTGGAATTTGGAT+TGG | + | chr8_1:76613334-76613353 | Msa1215370:intron | 30.0% |
| TTCACACATAACATTTGTTC+AGG | - | chr8_1:76613446-76613465 | None:intergenic | 30.0% | |
| CAATGAATGATGAATTCTCA+AGG | + | chr8_1:76613562-76613581 | Msa1215370:CDS | 30.0% | |
| TAGAGTAATAATCCATCTGT+TGG | - | chr8_1:76613596-76613615 | None:intergenic | 30.0% | |
| ! | TGATAACATTGAGAAAGTGT+TGG | + | chr8_1:76613818-76613837 | Msa1215370:CDS | 30.0% |
| GTGTCAATTTCTAAATGTTG+GGG | + | chr8_1:76613969-76613988 | Msa1215370:intron | 30.0% | |
| CATATCTATCTTCTTTATGC+AGG | + | chr8_1:76614028-76614047 | Msa1215370:intron | 30.0% | |
| ATACTTGCATTTATGTGTCA+TGG | + | chr8_1:76614090-76614109 | Msa1215370:CDS | 30.0% | |
| ! | GGATACAATGTTACCATTTT+AGG | + | chr8_1:76614247-76614266 | Msa1215370:three_prime_UTR | 30.0% |
| !! | ACGTGTTTTGAGCATCAATA+TGG | + | chr8_1:76613048-76613067 | Msa1215370:exon | 35.0% |
| !! | CGTGTTTTGAGCATCAATAT+GGG | + | chr8_1:76613049-76613068 | Msa1215370:exon | 35.0% |
| !! | GTGTTTTGAGCATCAATATG+GGG | + | chr8_1:76613050-76613069 | Msa1215370:exon | 35.0% |
| TATGGGGATATTGTATGGAA+TGG | + | chr8_1:76613066-76613085 | Msa1215370:exon | 35.0% | |
| ! | CATTTGTTCAGGTTCATTCA+AGG | - | chr8_1:76613435-76613454 | None:intergenic | 35.0% |
| TCATCATTCATTGTATAGGC+AGG | - | chr8_1:76613555-76613574 | None:intergenic | 35.0% | |
| TAATCTGTCAGCATTTGGAT+CGG | - | chr8_1:76613619-76613638 | None:intergenic | 35.0% | |
| TTCAGTTCGTTTCAAAAGAC+AGG | + | chr8_1:76613896-76613915 | Msa1215370:CDS | 35.0% | |
| ! | ACATTTGGTGGAGTAATGTT+AGG | + | chr8_1:76613937-76613956 | Msa1215370:CDS | 35.0% |
| GTTGACCCAGTATACATTAT+TGG | - | chr8_1:76614195-76614214 | None:intergenic | 35.0% | |
| !! | ACGTGTTTTGAGCATCAATA+TGG | + | chr8_1:76613048-76613067 | Msa1215370:exon | 35.0% |
| !! | CGTGTTTTGAGCATCAATAT+GGG | + | chr8_1:76613049-76613068 | Msa1215370:exon | 35.0% |
| !! | GTGTTTTGAGCATCAATATG+GGG | + | chr8_1:76613050-76613069 | Msa1215370:exon | 35.0% |
| TATGGGGATATTGTATGGAA+TGG | + | chr8_1:76613066-76613085 | Msa1215370:exon | 35.0% | |
| ! | CATTTGTTCAGGTTCATTCA+AGG | - | chr8_1:76613435-76613454 | None:intergenic | 35.0% |
| TCATCATTCATTGTATAGGC+AGG | - | chr8_1:76613555-76613574 | None:intergenic | 35.0% | |
| TAATCTGTCAGCATTTGGAT+CGG | - | chr8_1:76613619-76613638 | None:intergenic | 35.0% | |
| TTCAGTTCGTTTCAAAAGAC+AGG | + | chr8_1:76613896-76613915 | Msa1215370:CDS | 35.0% | |
| ! | ACATTTGGTGGAGTAATGTT+AGG | + | chr8_1:76613937-76613956 | Msa1215370:CDS | 35.0% |
| GTTGACCCAGTATACATTAT+TGG | - | chr8_1:76614195-76614214 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGTTGTTGCG+TGG | - | chr8_1:76612977-76612996 | None:intergenic | 40.0% |
| TATTGTATGGAATGGTGGCA+AGG | + | chr8_1:76613074-76613093 | Msa1215370:CDS | 40.0% | |
| ATTGTATGGAATGGTGGCAA+GGG | + | chr8_1:76613075-76613094 | Msa1215370:CDS | 40.0% | |
| TTTCATGTTAGGAGAACCGA+TGG | + | chr8_1:76613235-76613254 | Msa1215370:CDS | 40.0% | |
| ! | TGTATGGCTGATGAAGCATT+CGG | + | chr8_1:76613271-76613290 | Msa1215370:CDS | 40.0% |
| ! | TGTTCAGGTTCATTCAAGGA+TGG | - | chr8_1:76613431-76613450 | None:intergenic | 40.0% |
| TGTTATGTGTGAATGACTGC+AGG | + | chr8_1:76613453-76613472 | Msa1215370:intron | 40.0% | |
| ! | AATAATCCATCTGTTGGCTG+AGG | - | chr8_1:76613590-76613609 | None:intergenic | 40.0% |
| CGGTTTAATCTGTCAGCATT+TGG | - | chr8_1:76613624-76613643 | None:intergenic | 40.0% | |
| GACAGATTAAACCGTCTCAA+AGG | + | chr8_1:76613630-76613649 | Msa1215370:CDS | 40.0% | |
| ! | GAGTCATTTCACCTTTGAGA+CGG | - | chr8_1:76613644-76613663 | None:intergenic | 40.0% |
| TCTCAAAGGTGAAATGACTC+AGG | + | chr8_1:76613644-76613663 | Msa1215370:CDS | 40.0% | |
| !! | ATTGAGAAAGTGTTGGAGAG+AGG | + | chr8_1:76613825-76613844 | Msa1215370:CDS | 40.0% |
| ! | TTGTTGTTGTTGTTGTTGCG+TGG | - | chr8_1:76612977-76612996 | None:intergenic | 40.0% |
| TATTGTATGGAATGGTGGCA+AGG | + | chr8_1:76613074-76613093 | Msa1215370:CDS | 40.0% | |
| ATTGTATGGAATGGTGGCAA+GGG | + | chr8_1:76613075-76613094 | Msa1215370:CDS | 40.0% | |
| TTTCATGTTAGGAGAACCGA+TGG | + | chr8_1:76613235-76613254 | Msa1215370:CDS | 40.0% | |
| ! | TGTATGGCTGATGAAGCATT+CGG | + | chr8_1:76613271-76613290 | Msa1215370:CDS | 40.0% |
| ! | TGTTCAGGTTCATTCAAGGA+TGG | - | chr8_1:76613431-76613450 | None:intergenic | 40.0% |
| TGTTATGTGTGAATGACTGC+AGG | + | chr8_1:76613453-76613472 | Msa1215370:intron | 40.0% | |
| ! | AATAATCCATCTGTTGGCTG+AGG | - | chr8_1:76613590-76613609 | None:intergenic | 40.0% |
| CGGTTTAATCTGTCAGCATT+TGG | - | chr8_1:76613624-76613643 | None:intergenic | 40.0% | |
| GACAGATTAAACCGTCTCAA+AGG | + | chr8_1:76613630-76613649 | Msa1215370:CDS | 40.0% | |
| ! | GAGTCATTTCACCTTTGAGA+CGG | - | chr8_1:76613644-76613663 | None:intergenic | 40.0% |
| TCTCAAAGGTGAAATGACTC+AGG | + | chr8_1:76613644-76613663 | Msa1215370:CDS | 40.0% | |
| !! | ATTGAGAAAGTGTTGGAGAG+AGG | + | chr8_1:76613825-76613844 | Msa1215370:CDS | 40.0% |
| GGGGATATTGTATGGAATGG+TGG | + | chr8_1:76613069-76613088 | Msa1215370:CDS | 45.0% | |
| TTGTATGGAATGGTGGCAAG+GGG | + | chr8_1:76613076-76613095 | Msa1215370:CDS | 45.0% | |
| ACAAAGAACCGTGAGTCCAT+CGG | - | chr8_1:76613254-76613273 | None:intergenic | 45.0% | |
| TGGACTCACGGTTCTTTGTA+TGG | + | chr8_1:76613255-76613274 | Msa1215370:CDS | 45.0% | |
| ATGTGTGAATGACTGCAGGA+AGG | + | chr8_1:76613457-76613476 | Msa1215370:intron | 45.0% | |
| AGGAGCTGAAAGAATTGCAC+GGG | - | chr8_1:76613535-76613554 | None:intergenic | 45.0% | |
| CAGGAGCTGAAAGAATTGCA+CGG | - | chr8_1:76613536-76613555 | None:intergenic | 45.0% | |
| GGGGATATTGTATGGAATGG+TGG | + | chr8_1:76613069-76613088 | Msa1215370:CDS | 45.0% | |
| TTGTATGGAATGGTGGCAAG+GGG | + | chr8_1:76613076-76613095 | Msa1215370:CDS | 45.0% | |
| ACAAAGAACCGTGAGTCCAT+CGG | - | chr8_1:76613254-76613273 | None:intergenic | 45.0% | |
| TGGACTCACGGTTCTTTGTA+TGG | + | chr8_1:76613255-76613274 | Msa1215370:CDS | 45.0% | |
| ATGTGTGAATGACTGCAGGA+AGG | + | chr8_1:76613457-76613476 | Msa1215370:intron | 45.0% | |
| AGGAGCTGAAAGAATTGCAC+GGG | - | chr8_1:76613535-76613554 | None:intergenic | 45.0% | |
| CAGGAGCTGAAAGAATTGCA+CGG | - | chr8_1:76613536-76613555 | None:intergenic | 45.0% | |
| ! | TAGGAGAACCGATGGACTCA+CGG | + | chr8_1:76613243-76613262 | Msa1215370:CDS | 50.0% |
| !! | GAGAAAGTGTTGGAGAGAGG+TGG | + | chr8_1:76613828-76613847 | Msa1215370:CDS | 50.0% |
| AGGTGGTCGTTTGGAAATGC+TGG | + | chr8_1:76613845-76613864 | Msa1215370:CDS | 50.0% | |
| ! | GTCCTTTTCTGACTTCGTGC+TGG | + | chr8_1:76614112-76614131 | Msa1215370:CDS | 50.0% |
| CTCCAGCACGAAGTCAGAAA+AGG | - | chr8_1:76614117-76614136 | None:intergenic | 50.0% | |
| GTGCTGGAGATAAGCTCTCA+AGG | + | chr8_1:76614128-76614147 | Msa1215370:exon | 50.0% | |
| ! | TAGGAGAACCGATGGACTCA+CGG | + | chr8_1:76613243-76613262 | Msa1215370:CDS | 50.0% |
| !! | GAGAAAGTGTTGGAGAGAGG+TGG | + | chr8_1:76613828-76613847 | Msa1215370:CDS | 50.0% |
| AGGTGGTCGTTTGGAAATGC+TGG | + | chr8_1:76613845-76613864 | Msa1215370:CDS | 50.0% | |
| ! | GTCCTTTTCTGACTTCGTGC+TGG | + | chr8_1:76614112-76614131 | Msa1215370:CDS | 50.0% |
| CTCCAGCACGAAGTCAGAAA+AGG | - | chr8_1:76614117-76614136 | None:intergenic | 50.0% | |
| GTGCTGGAGATAAGCTCTCA+AGG | + | chr8_1:76614128-76614147 | Msa1215370:exon | 50.0% | |
| ! | GGCAAGGGGACAGGTTGTTT+TGG | + | chr8_1:76613090-76613109 | Msa1215370:CDS | 55.0% |
| AAGGGTCCTCAGCCAACAGA+TGG | + | chr8_1:76613581-76613600 | Msa1215370:CDS | 55.0% | |
| GTTGGAGAGAGGTGGTCGTT+TGG | + | chr8_1:76613836-76613855 | Msa1215370:CDS | 55.0% | |
| ! | GGCAAGGGGACAGGTTGTTT+TGG | + | chr8_1:76613090-76613109 | Msa1215370:CDS | 55.0% |
| AAGGGTCCTCAGCCAACAGA+TGG | + | chr8_1:76613581-76613600 | Msa1215370:CDS | 55.0% | |
| GTTGGAGAGAGGTGGTCGTT+TGG | + | chr8_1:76613836-76613855 | Msa1215370:CDS | 55.0% | |
| TGGAATGGTGGCAAGGGGAC+AGG | + | chr8_1:76613081-76613100 | Msa1215370:CDS | 60.0% | |
| TGGAATGGTGGCAAGGGGAC+AGG | + | chr8_1:76613081-76613100 | Msa1215370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 76612972 | 76614279 | 76612972 | ID=Msa1215370;Name=Msa1215370 |
| chr8_1 | mRNA | 76612972 | 76614279 | 76612972 | ID=Msa1215370-mRNA-1;Parent=Msa1215370;Name=Msa1215370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95|1|1|1|1|1|4|139|224 |
| chr8_1 | exon | 76612972 | 76613295 | 76612972 | ID=Msa1215370-mRNA-1:exon:26317;Parent=Msa1215370-mRNA-1 |
| chr8_1 | exon | 76613475 | 76613665 | 76613475 | ID=Msa1215370-mRNA-1:exon:26318;Parent=Msa1215370-mRNA-1 |
| chr8_1 | exon | 76613801 | 76613964 | 76613801 | ID=Msa1215370-mRNA-1:exon:26319;Parent=Msa1215370-mRNA-1 |
| chr8_1 | exon | 76614050 | 76614279 | 76614050 | ID=Msa1215370-mRNA-1:exon:26320;Parent=Msa1215370-mRNA-1 |
| chr8_1 | five_prime_UTR | 76612972 | 76613066 | 76612972 | ID=Msa1215370-mRNA-1:five_prime_utr;Parent=Msa1215370-mRNA-1 |
| chr8_1 | CDS | 76613067 | 76613295 | 76613067 | ID=Msa1215370-mRNA-1:cds;Parent=Msa1215370-mRNA-1 |
| chr8_1 | CDS | 76613475 | 76613665 | 76613475 | ID=Msa1215370-mRNA-1:cds;Parent=Msa1215370-mRNA-1 |
| chr8_1 | CDS | 76613801 | 76613964 | 76613801 | ID=Msa1215370-mRNA-1:cds;Parent=Msa1215370-mRNA-1 |
| chr8_1 | CDS | 76614050 | 76614140 | 76614050 | ID=Msa1215370-mRNA-1:cds;Parent=Msa1215370-mRNA-1 |
| chr8_1 | three_prime_UTR | 76614141 | 76614279 | 76614141 | ID=Msa1215370-mRNA-1:three_prime_utr;Parent=Msa1215370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
