Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332120 | XP_003609409.1 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1 | 224 | 1.81e-162 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332120 | sp|Q9LFP1|VA713_ARATH | 64.286 | 224 | 77 | 2 | 1 | 224 | 1 | 221 | 1.02e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332120 | G7JFD0 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1 | 224 | 8.63e-163 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1215370 | Msa1332120 | 0.953104 | 5.706993e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332120 | MtrunA17_Chr4g0064371 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1 | 224 | 1.66e-166 | 457 |
| Msa1332120 | MtrunA17_Chr5g0441741 | 63.229 | 223 | 78 | 1 | 1 | 223 | 1 | 219 | 3.34e-108 | 310 |
| Msa1332120 | MtrunA17_Chr4g0026121 | 51.802 | 222 | 103 | 1 | 1 | 222 | 1 | 218 | 1.55e-84 | 250 |
| Msa1332120 | MtrunA17_Chr1g0210521 | 32.218 | 239 | 131 | 5 | 2 | 214 | 5 | 238 | 1.72e-39 | 135 |
| Msa1332120 | MtrunA17_Chr1g0169861 | 31.944 | 216 | 140 | 3 | 3 | 216 | 56 | 266 | 1.11e-38 | 134 |
| Msa1332120 | MtrunA17_Chr7g0237561 | 33.505 | 194 | 122 | 3 | 3 | 194 | 6 | 194 | 3.34e-36 | 127 |
| Msa1332120 | MtrunA17_Chr4g0010271 | 31.944 | 216 | 140 | 3 | 3 | 216 | 6 | 216 | 1.52e-35 | 125 |
| Msa1332120 | MtrunA17_Chr2g0291651 | 31.443 | 194 | 126 | 3 | 3 | 194 | 10 | 198 | 2.20e-33 | 119 |
| Msa1332120 | MtrunA17_Chr4g0043521 | 30.256 | 195 | 127 | 4 | 3 | 194 | 8 | 196 | 3.74e-32 | 116 |
| Msa1332120 | MtrunA17_Chr2g0296021 | 26.977 | 215 | 150 | 3 | 4 | 216 | 7 | 216 | 5.89e-31 | 113 |
| Msa1332120 | MtrunA17_Chr7g0237521 | 27.835 | 194 | 133 | 3 | 3 | 194 | 6 | 194 | 3.86e-25 | 98.2 |
| Msa1332120 | MtrunA17_Chr1g0169851 | 33.824 | 136 | 73 | 3 | 70 | 188 | 19 | 154 | 1.48e-18 | 79.3 |
| Msa1332120 | MtrunA17_Chr4g0010211 | 39.048 | 105 | 60 | 3 | 70 | 171 | 7 | 110 | 1.78e-17 | 75.1 |
| Msa1332120 | MtrunA17_Chr4g0058841 | 24.516 | 155 | 109 | 2 | 28 | 182 | 45 | 191 | 1.81e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332120 | AT5G11150.1 | 64.286 | 224 | 77 | 2 | 1 | 224 | 1 | 221 | 1.04e-110 | 317 |
| Msa1332120 | AT5G11150.2 | 64.574 | 223 | 76 | 2 | 1 | 223 | 1 | 220 | 4.50e-110 | 315 |
| Msa1332120 | AT4G32150.1 | 65.766 | 222 | 72 | 1 | 1 | 222 | 1 | 218 | 1.23e-106 | 306 |
| Msa1332120 | AT2G25340.1 | 63.964 | 222 | 76 | 1 | 1 | 222 | 1 | 218 | 5.99e-101 | 292 |
| Msa1332120 | AT5G22360.1 | 50.450 | 222 | 107 | 1 | 1 | 222 | 1 | 219 | 2.46e-86 | 255 |
| Msa1332120 | AT1G04760.2 | 32.870 | 216 | 138 | 3 | 3 | 216 | 6 | 216 | 8.18e-38 | 131 |
| Msa1332120 | AT1G04760.1 | 32.870 | 216 | 138 | 3 | 3 | 216 | 6 | 216 | 8.18e-38 | 131 |
| Msa1332120 | AT3G54300.3 | 32.174 | 230 | 127 | 4 | 2 | 210 | 5 | 226 | 1.01e-37 | 132 |
| Msa1332120 | AT3G54300.2 | 32.174 | 230 | 127 | 4 | 2 | 210 | 5 | 226 | 1.01e-37 | 132 |
| Msa1332120 | AT3G54300.1 | 32.174 | 230 | 127 | 4 | 2 | 210 | 5 | 226 | 1.01e-37 | 132 |
| Msa1332120 | AT1G04750.1 | 31.481 | 216 | 141 | 3 | 3 | 216 | 6 | 216 | 2.66e-34 | 122 |
| Msa1332120 | AT2G32670.1 | 32.474 | 194 | 124 | 3 | 3 | 194 | 71 | 259 | 6.68e-34 | 123 |
| Msa1332120 | AT2G33120.1 | 31.443 | 194 | 126 | 3 | 3 | 194 | 6 | 194 | 2.51e-33 | 120 |
| Msa1332120 | AT2G33120.2 | 29.703 | 202 | 127 | 4 | 3 | 194 | 6 | 202 | 4.29e-30 | 111 |
| Msa1332120 | AT4G15780.1 | 29.508 | 183 | 116 | 4 | 4 | 184 | 7 | 178 | 2.18e-23 | 93.2 |
| Msa1332120 | AT2G33110.1 | 29.381 | 194 | 126 | 4 | 3 | 194 | 6 | 190 | 6.94e-23 | 92.8 |
| Msa1332120 | AT2G33110.2 | 32.099 | 162 | 103 | 3 | 3 | 162 | 6 | 162 | 7.21e-22 | 89.4 |
| Msa1332120 | AT1G04750.2 | 31.884 | 138 | 92 | 2 | 81 | 216 | 1 | 138 | 1.81e-18 | 79.0 |
| Msa1332120 | AT1G04750.4 | 31.884 | 138 | 92 | 2 | 81 | 216 | 1 | 138 | 1.81e-18 | 79.0 |
| Msa1332120 | AT1G04750.3 | 31.884 | 138 | 92 | 2 | 81 | 216 | 1 | 138 | 1.81e-18 | 79.0 |
| Msa1332120 | AT5G58060.1 | 24.627 | 134 | 99 | 1 | 49 | 182 | 60 | 191 | 5.61e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTCATACTTGTATTTAT+TGG | 0.232393 | 8_4:+52023723 | Msa1332120:three_prime_UTR |
| GTTGACCCAGTATACATTAT+TGG | 0.240608 | 8_4:-52023690 | None:intergenic |
| TATTCATACTTGTATTTATT+GGG | 0.249999 | 8_4:+52023724 | Msa1332120:three_prime_UTR |
| GGCAAGGGGACAGGTTGTTT+TGG | 0.253676 | 8_4:+52022588 | Msa1332120:CDS |
| TATTAGTCCCTTGATTAATC+TGG | 0.318783 | 8_4:-52022666 | None:intergenic |
| AAACGTGCACAAGCCTAAAA+TGG | 0.328667 | 8_4:-52023758 | None:intergenic |
| ATATCTTCAAGAAATGAAAA+TGG | 0.333891 | 8_4:-52022981 | None:intergenic |
| CGGTTTAATCTGTCAGCATT+TGG | 0.337061 | 8_4:-52023119 | None:intergenic |
| TGGACTCACGGTTCTTTGTA+TGG | 0.360279 | 8_4:+52022753 | Msa1332120:CDS |
| GAATTCATCATTCATTGTAT+AGG | 0.373894 | 8_4:-52023054 | None:intergenic |
| ACATTTGGTGGAGTAATGTT+AGG | 0.390510 | 8_4:+52023435 | Msa1332120:CDS |
| TTCAGTTCGTTTCAAAAGAC+AGG | 0.411093 | 8_4:+52023394 | Msa1332120:CDS |
| GTTGGAGAGAGGTGGTCGTT+TGG | 0.415150 | 8_4:+52023334 | Msa1332120:CDS |
| ATCAATATGGGGATATTGTA+TGG | 0.437966 | 8_4:+52022559 | Msa1332120:exon |
| CTCAATGTTATCAATCATAA+CGG | 0.460143 | 8_4:-52023306 | None:intergenic |
| TGGAATGGTGGCAAGGGGAC+AGG | 0.468795 | 8_4:+52022579 | Msa1332120:CDS |
| ATACTTGCATTTATGTGTCA+TGG | 0.486797 | 8_4:+52023588 | Msa1332120:CDS |
| ATACTTAACCAGATTAATCA+AGG | 0.489039 | 8_4:+52022658 | Msa1332120:CDS |
| TCATCATTCATTGTATAGGC+AGG | 0.492044 | 8_4:-52023050 | None:intergenic |
| AGGTGGTCGTTTGGAAATGC+TGG | 0.511827 | 8_4:+52023343 | Msa1332120:CDS |
| ATTGTATGGAATGGTGGCAA+GGG | 0.521454 | 8_4:+52022573 | Msa1332120:CDS |
| ATTGAGAAAGTGTTGGAGAG+AGG | 0.527753 | 8_4:+52023323 | Msa1332120:CDS |
| CTCCAGCACGAAGTCAGAAA+AGG | 0.530190 | 8_4:-52023612 | None:intergenic |
| TATTGTATGGAATGGTGGCA+AGG | 0.543226 | 8_4:+52022572 | Msa1332120:CDS |
| AAGGGTCCTCAGCCAACAGA+TGG | 0.550516 | 8_4:+52023079 | Msa1332120:CDS |
| CAATGAATGATGAATTCTCA+AGG | 0.553713 | 8_4:+52023060 | Msa1332120:CDS |
| TGTATGGCTGATGAAGCATT+CGG | 0.564914 | 8_4:+52022769 | Msa1332120:CDS |
| TAGAGTAATAATCCATCTGT+TGG | 0.566521 | 8_4:-52023091 | None:intergenic |
| GGGGATATTGTATGGAATGG+TGG | 0.567746 | 8_4:+52022567 | Msa1332120:CDS |
| TTTCATGTTAGGAGAACCGA+TGG | 0.574207 | 8_4:+52022733 | Msa1332120:CDS |
| TGATAACATTGAGAAAGTGT+TGG | 0.575571 | 8_4:+52023316 | Msa1332120:CDS |
| TTTGACCAATAATGTATACT+GGG | 0.576344 | 8_4:+52023685 | Msa1332120:three_prime_UTR |
| GACAGATTAAACCGTCTCAA+AGG | 0.583346 | 8_4:+52023128 | Msa1332120:CDS |
| AGGAGCTGAAAGAATTGCAC+GGG | 0.584676 | 8_4:-52023030 | None:intergenic |
| GAGTCATTTCACCTTTGAGA+CGG | 0.596112 | 8_4:-52023139 | None:intergenic |
| AATAATCCATCTGTTGGCTG+AGG | 0.597408 | 8_4:-52023085 | None:intergenic |
| TATGGGGATATTGTATGGAA+TGG | 0.597713 | 8_4:+52022564 | Msa1332120:exon |
| GTGCTGGAGATAAGCTCTCA+AGG | 0.604752 | 8_4:+52023626 | Msa1332120:exon |
| TAATCTGTCAGCATTTGGAT+CGG | 0.609095 | 8_4:-52023114 | None:intergenic |
| ACAAAGAACCGTGAGTCCAT+CGG | 0.624255 | 8_4:-52022749 | None:intergenic |
| AATGAATGATGAATTCTCAA+GGG | 0.630979 | 8_4:+52023061 | Msa1332120:CDS |
| TCTCAAAGGTGAAATGACTC+AGG | 0.630982 | 8_4:+52023142 | Msa1332120:CDS |
| CAGGAGCTGAAAGAATTGCA+CGG | 0.634803 | 8_4:-52023031 | None:intergenic |
| TTGTATGGAATGGTGGCAAG+GGG | 0.640525 | 8_4:+52022574 | Msa1332120:CDS |
| GAGAAAGTGTTGGAGAGAGG+TGG | 0.644427 | 8_4:+52023326 | Msa1332120:CDS |
| TAGGAGAACCGATGGACTCA+CGG | 0.645185 | 8_4:+52022741 | Msa1332120:CDS |
| TACTTAACCAGATTAATCAA+GGG | 0.658304 | 8_4:+52022659 | Msa1332120:CDS |
| AAGTATAATATAAAAGACAA+TGG | 0.661950 | 8_4:-52023571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACACAATCAATAAAAATAA+GGG | - | chr8_4:52022820-52022839 | None:intergenic | 15.0% |
| !! | AAACACAATCAATAAAAATA+AGG | - | chr8_4:52022821-52022840 | None:intergenic | 15.0% |
| !!! | TTATTTTTATTGATTGTGTT+TGG | + | chr8_4:52022820-52022839 | Msa1332120:intron | 15.0% |
| !! | CATATCTTAATGTAAATAAA+TGG | - | chr8_4:52023230-52023249 | None:intergenic | 15.0% |
| !! | ATCATACAACAAATATATTA+AGG | - | chr8_4:52023267-52023286 | None:intergenic | 15.0% |
| !! | GTTGTATGATAATTATATAT+AGG | + | chr8_4:52023277-52023296 | Msa1332120:intron | 15.0% |
| !! | AAGTATAATATAAAAGACAA+TGG | - | chr8_4:52023574-52023593 | None:intergenic | 15.0% |
| !! | ATATTCATACTTGTATTTAT+TGG | + | chr8_4:52023723-52023742 | Msa1332120:three_prime_UTR | 15.0% |
| !! | TATTCATACTTGTATTTATT+GGG | + | chr8_4:52023724-52023743 | Msa1332120:three_prime_UTR | 15.0% |
| !! | AACACAATCAATAAAAATAA+GGG | - | chr8_4:52022820-52022839 | None:intergenic | 15.0% |
| !! | AAACACAATCAATAAAAATA+AGG | - | chr8_4:52022821-52022840 | None:intergenic | 15.0% |
| !!! | TTATTTTTATTGATTGTGTT+TGG | + | chr8_4:52022820-52022839 | Msa1332120:intron | 15.0% |
| !! | CATATCTTAATGTAAATAAA+TGG | - | chr8_4:52023230-52023249 | None:intergenic | 15.0% |
| !! | ATCATACAACAAATATATTA+AGG | - | chr8_4:52023267-52023286 | None:intergenic | 15.0% |
| !! | GTTGTATGATAATTATATAT+AGG | + | chr8_4:52023277-52023296 | Msa1332120:intron | 15.0% |
| !! | AAGTATAATATAAAAGACAA+TGG | - | chr8_4:52023574-52023593 | None:intergenic | 15.0% |
| !! | ATATTCATACTTGTATTTAT+TGG | + | chr8_4:52023723-52023742 | Msa1332120:three_prime_UTR | 15.0% |
| !! | TATTCATACTTGTATTTATT+GGG | + | chr8_4:52023724-52023743 | Msa1332120:three_prime_UTR | 15.0% |
| !!! | TTTTGAAAGTTTAAGGTAAA+GGG | - | chr8_4:52022501-52022520 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAGTTTAAGGTAA+AGG | - | chr8_4:52022502-52022521 | None:intergenic | 20.0% |
| !!! | TGAGATTTTTTGAAAGTTTA+AGG | - | chr8_4:52022508-52022527 | None:intergenic | 20.0% |
| !! | TTAGCATACAACATAATATT+TGG | - | chr8_4:52022882-52022901 | None:intergenic | 20.0% |
| !! | ATATCTTCAAGAAATGAAAA+TGG | - | chr8_4:52022984-52023003 | None:intergenic | 20.0% |
| !! | GTCGATATAAAAATAACATT+TGG | + | chr8_4:52023420-52023439 | Msa1332120:CDS | 20.0% |
| !! | GATATAAAAATAACATTTGG+TGG | + | chr8_4:52023423-52023442 | Msa1332120:CDS | 20.0% |
| !!! | TTTTGAAAGTTTAAGGTAAA+GGG | - | chr8_4:52022501-52022520 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAGTTTAAGGTAA+AGG | - | chr8_4:52022502-52022521 | None:intergenic | 20.0% |
| !!! | TGAGATTTTTTGAAAGTTTA+AGG | - | chr8_4:52022508-52022527 | None:intergenic | 20.0% |
| !! | TTAGCATACAACATAATATT+TGG | - | chr8_4:52022882-52022901 | None:intergenic | 20.0% |
| !! | ATATCTTCAAGAAATGAAAA+TGG | - | chr8_4:52022984-52023003 | None:intergenic | 20.0% |
| !! | GTCGATATAAAAATAACATT+TGG | + | chr8_4:52023420-52023439 | Msa1332120:CDS | 20.0% |
| !! | GATATAAAAATAACATTTGG+TGG | + | chr8_4:52023423-52023442 | Msa1332120:CDS | 20.0% |
| ! | ATACTTAACCAGATTAATCA+AGG | + | chr8_4:52022658-52022677 | Msa1332120:CDS | 25.0% |
| ! | TACTTAACCAGATTAATCAA+GGG | + | chr8_4:52022659-52022678 | Msa1332120:CDS | 25.0% |
| !! | ATCGTTATGTTTTTCATGTT+AGG | + | chr8_4:52022722-52022741 | Msa1332120:CDS | 25.0% |
| !! | TATTGATTGTGTTTGGAATT+TGG | + | chr8_4:52022827-52022846 | Msa1332120:intron | 25.0% |
| ! | GAATTCATCATTCATTGTAT+AGG | - | chr8_4:52023057-52023076 | None:intergenic | 25.0% |
| ! | AATGAATGATGAATTCTCAA+GGG | + | chr8_4:52023061-52023080 | Msa1332120:CDS | 25.0% |
| ! | TATGAAAAAAAGTTGAATGC+TGG | + | chr8_4:52023193-52023212 | Msa1332120:intron | 25.0% |
| ! | CTCAATGTTATCAATCATAA+CGG | - | chr8_4:52023309-52023328 | None:intergenic | 25.0% |
| ! | AAGTGTCAATTTCTAAATGT+TGG | + | chr8_4:52023465-52023484 | Msa1332120:intron | 25.0% |
| ! | AGTGTCAATTTCTAAATGTT+GGG | + | chr8_4:52023466-52023485 | Msa1332120:intron | 25.0% |
| ! | ATATCTATCTTCTTTATGCA+GGG | + | chr8_4:52023527-52023546 | Msa1332120:intron | 25.0% |
| !! | TTTTGACCAATAATGTATAC+TGG | + | chr8_4:52023684-52023703 | Msa1332120:three_prime_UTR | 25.0% |
| ! | TTTGACCAATAATGTATACT+GGG | + | chr8_4:52023685-52023704 | Msa1332120:three_prime_UTR | 25.0% |
| ! | ATACTTAACCAGATTAATCA+AGG | + | chr8_4:52022658-52022677 | Msa1332120:CDS | 25.0% |
| ! | TACTTAACCAGATTAATCAA+GGG | + | chr8_4:52022659-52022678 | Msa1332120:CDS | 25.0% |
| !! | ATCGTTATGTTTTTCATGTT+AGG | + | chr8_4:52022722-52022741 | Msa1332120:CDS | 25.0% |
| !! | TATTGATTGTGTTTGGAATT+TGG | + | chr8_4:52022827-52022846 | Msa1332120:intron | 25.0% |
| ! | GAATTCATCATTCATTGTAT+AGG | - | chr8_4:52023057-52023076 | None:intergenic | 25.0% |
| ! | AATGAATGATGAATTCTCAA+GGG | + | chr8_4:52023061-52023080 | Msa1332120:CDS | 25.0% |
| ! | TATGAAAAAAAGTTGAATGC+TGG | + | chr8_4:52023193-52023212 | Msa1332120:intron | 25.0% |
| ! | CTCAATGTTATCAATCATAA+CGG | - | chr8_4:52023309-52023328 | None:intergenic | 25.0% |
| ! | AAGTGTCAATTTCTAAATGT+TGG | + | chr8_4:52023465-52023484 | Msa1332120:intron | 25.0% |
| ! | AGTGTCAATTTCTAAATGTT+GGG | + | chr8_4:52023466-52023485 | Msa1332120:intron | 25.0% |
| ! | ATATCTATCTTCTTTATGCA+GGG | + | chr8_4:52023527-52023546 | Msa1332120:intron | 25.0% |
| !! | TTTTGACCAATAATGTATAC+TGG | + | chr8_4:52023684-52023703 | Msa1332120:three_prime_UTR | 25.0% |
| ! | TTTGACCAATAATGTATACT+GGG | + | chr8_4:52023685-52023704 | Msa1332120:three_prime_UTR | 25.0% |
| ATCAATATGGGGATATTGTA+TGG | + | chr8_4:52022559-52022578 | Msa1332120:exon | 30.0% | |
| TATTAGTCCCTTGATTAATC+TGG | - | chr8_4:52022669-52022688 | None:intergenic | 30.0% | |
| ! | ATTGTGTTTGGAATTTGGAT+TGG | + | chr8_4:52022832-52022851 | Msa1332120:intron | 30.0% |
| TTCACACATAACATTTGTTC+AGG | - | chr8_4:52022944-52022963 | None:intergenic | 30.0% | |
| CAATGAATGATGAATTCTCA+AGG | + | chr8_4:52023060-52023079 | Msa1332120:CDS | 30.0% | |
| TAGAGTAATAATCCATCTGT+TGG | - | chr8_4:52023094-52023113 | None:intergenic | 30.0% | |
| ! | TGATAACATTGAGAAAGTGT+TGG | + | chr8_4:52023316-52023335 | Msa1332120:CDS | 30.0% |
| GTGTCAATTTCTAAATGTTG+GGG | + | chr8_4:52023467-52023486 | Msa1332120:intron | 30.0% | |
| CATATCTATCTTCTTTATGC+AGG | + | chr8_4:52023526-52023545 | Msa1332120:intron | 30.0% | |
| ATACTTGCATTTATGTGTCA+TGG | + | chr8_4:52023588-52023607 | Msa1332120:CDS | 30.0% | |
| ! | GGATACAATGTTACCATTTT+AGG | + | chr8_4:52023745-52023764 | Msa1332120:three_prime_UTR | 30.0% |
| ATCAATATGGGGATATTGTA+TGG | + | chr8_4:52022559-52022578 | Msa1332120:exon | 30.0% | |
| TATTAGTCCCTTGATTAATC+TGG | - | chr8_4:52022669-52022688 | None:intergenic | 30.0% | |
| ! | ATTGTGTTTGGAATTTGGAT+TGG | + | chr8_4:52022832-52022851 | Msa1332120:intron | 30.0% |
| TTCACACATAACATTTGTTC+AGG | - | chr8_4:52022944-52022963 | None:intergenic | 30.0% | |
| CAATGAATGATGAATTCTCA+AGG | + | chr8_4:52023060-52023079 | Msa1332120:CDS | 30.0% | |
| TAGAGTAATAATCCATCTGT+TGG | - | chr8_4:52023094-52023113 | None:intergenic | 30.0% | |
| ! | TGATAACATTGAGAAAGTGT+TGG | + | chr8_4:52023316-52023335 | Msa1332120:CDS | 30.0% |
| GTGTCAATTTCTAAATGTTG+GGG | + | chr8_4:52023467-52023486 | Msa1332120:intron | 30.0% | |
| CATATCTATCTTCTTTATGC+AGG | + | chr8_4:52023526-52023545 | Msa1332120:intron | 30.0% | |
| ATACTTGCATTTATGTGTCA+TGG | + | chr8_4:52023588-52023607 | Msa1332120:CDS | 30.0% | |
| ! | GGATACAATGTTACCATTTT+AGG | + | chr8_4:52023745-52023764 | Msa1332120:three_prime_UTR | 30.0% |
| !! | ACGTGTTTTGAGCATCAATA+TGG | + | chr8_4:52022546-52022565 | Msa1332120:exon | 35.0% |
| !! | CGTGTTTTGAGCATCAATAT+GGG | + | chr8_4:52022547-52022566 | Msa1332120:exon | 35.0% |
| !! | GTGTTTTGAGCATCAATATG+GGG | + | chr8_4:52022548-52022567 | Msa1332120:exon | 35.0% |
| TATGGGGATATTGTATGGAA+TGG | + | chr8_4:52022564-52022583 | Msa1332120:exon | 35.0% | |
| ! | CATTTGTTCAGGTTCATTCA+AGG | - | chr8_4:52022933-52022952 | None:intergenic | 35.0% |
| TCATCATTCATTGTATAGGC+AGG | - | chr8_4:52023053-52023072 | None:intergenic | 35.0% | |
| TAATCTGTCAGCATTTGGAT+CGG | - | chr8_4:52023117-52023136 | None:intergenic | 35.0% | |
| TTCAGTTCGTTTCAAAAGAC+AGG | + | chr8_4:52023394-52023413 | Msa1332120:CDS | 35.0% | |
| ! | ACATTTGGTGGAGTAATGTT+AGG | + | chr8_4:52023435-52023454 | Msa1332120:CDS | 35.0% |
| GTTGACCCAGTATACATTAT+TGG | - | chr8_4:52023693-52023712 | None:intergenic | 35.0% | |
| !! | ACGTGTTTTGAGCATCAATA+TGG | + | chr8_4:52022546-52022565 | Msa1332120:exon | 35.0% |
| !! | CGTGTTTTGAGCATCAATAT+GGG | + | chr8_4:52022547-52022566 | Msa1332120:exon | 35.0% |
| !! | GTGTTTTGAGCATCAATATG+GGG | + | chr8_4:52022548-52022567 | Msa1332120:exon | 35.0% |
| TATGGGGATATTGTATGGAA+TGG | + | chr8_4:52022564-52022583 | Msa1332120:exon | 35.0% | |
| ! | CATTTGTTCAGGTTCATTCA+AGG | - | chr8_4:52022933-52022952 | None:intergenic | 35.0% |
| TCATCATTCATTGTATAGGC+AGG | - | chr8_4:52023053-52023072 | None:intergenic | 35.0% | |
| TAATCTGTCAGCATTTGGAT+CGG | - | chr8_4:52023117-52023136 | None:intergenic | 35.0% | |
| TTCAGTTCGTTTCAAAAGAC+AGG | + | chr8_4:52023394-52023413 | Msa1332120:CDS | 35.0% | |
| ! | ACATTTGGTGGAGTAATGTT+AGG | + | chr8_4:52023435-52023454 | Msa1332120:CDS | 35.0% |
| GTTGACCCAGTATACATTAT+TGG | - | chr8_4:52023693-52023712 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGTTGTTGCG+TGG | - | chr8_4:52022475-52022494 | None:intergenic | 40.0% |
| TATTGTATGGAATGGTGGCA+AGG | + | chr8_4:52022572-52022591 | Msa1332120:CDS | 40.0% | |
| ATTGTATGGAATGGTGGCAA+GGG | + | chr8_4:52022573-52022592 | Msa1332120:CDS | 40.0% | |
| TTTCATGTTAGGAGAACCGA+TGG | + | chr8_4:52022733-52022752 | Msa1332120:CDS | 40.0% | |
| ! | TGTATGGCTGATGAAGCATT+CGG | + | chr8_4:52022769-52022788 | Msa1332120:CDS | 40.0% |
| ! | TGTTCAGGTTCATTCAAGGA+TGG | - | chr8_4:52022929-52022948 | None:intergenic | 40.0% |
| TGTTATGTGTGAATGACTGC+AGG | + | chr8_4:52022951-52022970 | Msa1332120:intron | 40.0% | |
| ! | AATAATCCATCTGTTGGCTG+AGG | - | chr8_4:52023088-52023107 | None:intergenic | 40.0% |
| CGGTTTAATCTGTCAGCATT+TGG | - | chr8_4:52023122-52023141 | None:intergenic | 40.0% | |
| GACAGATTAAACCGTCTCAA+AGG | + | chr8_4:52023128-52023147 | Msa1332120:CDS | 40.0% | |
| ! | GAGTCATTTCACCTTTGAGA+CGG | - | chr8_4:52023142-52023161 | None:intergenic | 40.0% |
| TCTCAAAGGTGAAATGACTC+AGG | + | chr8_4:52023142-52023161 | Msa1332120:CDS | 40.0% | |
| !! | ATTGAGAAAGTGTTGGAGAG+AGG | + | chr8_4:52023323-52023342 | Msa1332120:CDS | 40.0% |
| ! | TTGTTGTTGTTGTTGTTGCG+TGG | - | chr8_4:52022475-52022494 | None:intergenic | 40.0% |
| TATTGTATGGAATGGTGGCA+AGG | + | chr8_4:52022572-52022591 | Msa1332120:CDS | 40.0% | |
| ATTGTATGGAATGGTGGCAA+GGG | + | chr8_4:52022573-52022592 | Msa1332120:CDS | 40.0% | |
| TTTCATGTTAGGAGAACCGA+TGG | + | chr8_4:52022733-52022752 | Msa1332120:CDS | 40.0% | |
| ! | TGTATGGCTGATGAAGCATT+CGG | + | chr8_4:52022769-52022788 | Msa1332120:CDS | 40.0% |
| ! | TGTTCAGGTTCATTCAAGGA+TGG | - | chr8_4:52022929-52022948 | None:intergenic | 40.0% |
| TGTTATGTGTGAATGACTGC+AGG | + | chr8_4:52022951-52022970 | Msa1332120:intron | 40.0% | |
| ! | AATAATCCATCTGTTGGCTG+AGG | - | chr8_4:52023088-52023107 | None:intergenic | 40.0% |
| CGGTTTAATCTGTCAGCATT+TGG | - | chr8_4:52023122-52023141 | None:intergenic | 40.0% | |
| GACAGATTAAACCGTCTCAA+AGG | + | chr8_4:52023128-52023147 | Msa1332120:CDS | 40.0% | |
| ! | GAGTCATTTCACCTTTGAGA+CGG | - | chr8_4:52023142-52023161 | None:intergenic | 40.0% |
| TCTCAAAGGTGAAATGACTC+AGG | + | chr8_4:52023142-52023161 | Msa1332120:CDS | 40.0% | |
| !! | ATTGAGAAAGTGTTGGAGAG+AGG | + | chr8_4:52023323-52023342 | Msa1332120:CDS | 40.0% |
| GGGGATATTGTATGGAATGG+TGG | + | chr8_4:52022567-52022586 | Msa1332120:CDS | 45.0% | |
| TTGTATGGAATGGTGGCAAG+GGG | + | chr8_4:52022574-52022593 | Msa1332120:CDS | 45.0% | |
| ACAAAGAACCGTGAGTCCAT+CGG | - | chr8_4:52022752-52022771 | None:intergenic | 45.0% | |
| TGGACTCACGGTTCTTTGTA+TGG | + | chr8_4:52022753-52022772 | Msa1332120:CDS | 45.0% | |
| ATGTGTGAATGACTGCAGGA+AGG | + | chr8_4:52022955-52022974 | Msa1332120:intron | 45.0% | |
| AGGAGCTGAAAGAATTGCAC+GGG | - | chr8_4:52023033-52023052 | None:intergenic | 45.0% | |
| CAGGAGCTGAAAGAATTGCA+CGG | - | chr8_4:52023034-52023053 | None:intergenic | 45.0% | |
| GGGGATATTGTATGGAATGG+TGG | + | chr8_4:52022567-52022586 | Msa1332120:CDS | 45.0% | |
| TTGTATGGAATGGTGGCAAG+GGG | + | chr8_4:52022574-52022593 | Msa1332120:CDS | 45.0% | |
| ACAAAGAACCGTGAGTCCAT+CGG | - | chr8_4:52022752-52022771 | None:intergenic | 45.0% | |
| TGGACTCACGGTTCTTTGTA+TGG | + | chr8_4:52022753-52022772 | Msa1332120:CDS | 45.0% | |
| ATGTGTGAATGACTGCAGGA+AGG | + | chr8_4:52022955-52022974 | Msa1332120:intron | 45.0% | |
| AGGAGCTGAAAGAATTGCAC+GGG | - | chr8_4:52023033-52023052 | None:intergenic | 45.0% | |
| CAGGAGCTGAAAGAATTGCA+CGG | - | chr8_4:52023034-52023053 | None:intergenic | 45.0% | |
| ! | TAGGAGAACCGATGGACTCA+CGG | + | chr8_4:52022741-52022760 | Msa1332120:CDS | 50.0% |
| !! | GAGAAAGTGTTGGAGAGAGG+TGG | + | chr8_4:52023326-52023345 | Msa1332120:CDS | 50.0% |
| AGGTGGTCGTTTGGAAATGC+TGG | + | chr8_4:52023343-52023362 | Msa1332120:CDS | 50.0% | |
| ! | GTCCTTTTCTGACTTCGTGC+TGG | + | chr8_4:52023610-52023629 | Msa1332120:CDS | 50.0% |
| CTCCAGCACGAAGTCAGAAA+AGG | - | chr8_4:52023615-52023634 | None:intergenic | 50.0% | |
| GTGCTGGAGATAAGCTCTCA+AGG | + | chr8_4:52023626-52023645 | Msa1332120:exon | 50.0% | |
| ! | TAGGAGAACCGATGGACTCA+CGG | + | chr8_4:52022741-52022760 | Msa1332120:CDS | 50.0% |
| !! | GAGAAAGTGTTGGAGAGAGG+TGG | + | chr8_4:52023326-52023345 | Msa1332120:CDS | 50.0% |
| AGGTGGTCGTTTGGAAATGC+TGG | + | chr8_4:52023343-52023362 | Msa1332120:CDS | 50.0% | |
| ! | GTCCTTTTCTGACTTCGTGC+TGG | + | chr8_4:52023610-52023629 | Msa1332120:CDS | 50.0% |
| CTCCAGCACGAAGTCAGAAA+AGG | - | chr8_4:52023615-52023634 | None:intergenic | 50.0% | |
| GTGCTGGAGATAAGCTCTCA+AGG | + | chr8_4:52023626-52023645 | Msa1332120:exon | 50.0% | |
| ! | GGCAAGGGGACAGGTTGTTT+TGG | + | chr8_4:52022588-52022607 | Msa1332120:CDS | 55.0% |
| AAGGGTCCTCAGCCAACAGA+TGG | + | chr8_4:52023079-52023098 | Msa1332120:CDS | 55.0% | |
| GTTGGAGAGAGGTGGTCGTT+TGG | + | chr8_4:52023334-52023353 | Msa1332120:CDS | 55.0% | |
| ! | GGCAAGGGGACAGGTTGTTT+TGG | + | chr8_4:52022588-52022607 | Msa1332120:CDS | 55.0% |
| AAGGGTCCTCAGCCAACAGA+TGG | + | chr8_4:52023079-52023098 | Msa1332120:CDS | 55.0% | |
| GTTGGAGAGAGGTGGTCGTT+TGG | + | chr8_4:52023334-52023353 | Msa1332120:CDS | 55.0% | |
| TGGAATGGTGGCAAGGGGAC+AGG | + | chr8_4:52022579-52022598 | Msa1332120:CDS | 60.0% | |
| TGGAATGGTGGCAAGGGGAC+AGG | + | chr8_4:52022579-52022598 | Msa1332120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 52022470 | 52023777 | 52022470 | ID=Msa1332120;Name=Msa1332120 |
| chr8_4 | mRNA | 52022470 | 52023777 | 52022470 | ID=Msa1332120-mRNA-1;Parent=Msa1332120;Name=Msa1332120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95|1|1|1|1|1|4|139|224 |
| chr8_4 | exon | 52022470 | 52022793 | 52022470 | ID=Msa1332120-mRNA-1:exon:15516;Parent=Msa1332120-mRNA-1 |
| chr8_4 | exon | 52022973 | 52023163 | 52022973 | ID=Msa1332120-mRNA-1:exon:15517;Parent=Msa1332120-mRNA-1 |
| chr8_4 | exon | 52023299 | 52023462 | 52023299 | ID=Msa1332120-mRNA-1:exon:15518;Parent=Msa1332120-mRNA-1 |
| chr8_4 | exon | 52023548 | 52023777 | 52023548 | ID=Msa1332120-mRNA-1:exon:15519;Parent=Msa1332120-mRNA-1 |
| chr8_4 | five_prime_UTR | 52022470 | 52022564 | 52022470 | ID=Msa1332120-mRNA-1:five_prime_utr;Parent=Msa1332120-mRNA-1 |
| chr8_4 | CDS | 52022565 | 52022793 | 52022565 | ID=Msa1332120-mRNA-1:cds;Parent=Msa1332120-mRNA-1 |
| chr8_4 | CDS | 52022973 | 52023163 | 52022973 | ID=Msa1332120-mRNA-1:cds;Parent=Msa1332120-mRNA-1 |
| chr8_4 | CDS | 52023299 | 52023462 | 52023299 | ID=Msa1332120-mRNA-1:cds;Parent=Msa1332120-mRNA-1 |
| chr8_4 | CDS | 52023548 | 52023638 | 52023548 | ID=Msa1332120-mRNA-1:cds;Parent=Msa1332120-mRNA-1 |
| chr8_4 | three_prime_UTR | 52023639 | 52023777 | 52023639 | ID=Msa1332120-mRNA-1:three_prime_utr;Parent=Msa1332120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
