Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216240 | XP_013458180.1 | 96.266 | 241 | 7 | 1 | 1 | 241 | 55 | 293 | 2.49e-166 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216240 | sp|Q9ZT66|E134_MAIZE | 44.379 | 169 | 90 | 2 | 28 | 196 | 55 | 219 | 6.79e-45 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1216240 | Msa1216490 | 0.890897 | 6.503018e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216240 | MtrunA17_Chr4g0065821 | 78.008 | 241 | 46 | 2 | 1 | 241 | 1 | 234 | 1.71e-134 | 378 |
| Msa1216240 | MtrunA17_Chr4g0065781 | 66.805 | 241 | 77 | 2 | 1 | 241 | 1 | 238 | 6.62e-109 | 313 |
| Msa1216240 | MtrunA17_Chr4g0065811 | 97.260 | 146 | 4 | 0 | 96 | 241 | 1 | 146 | 3.72e-100 | 288 |
| Msa1216240 | MtrunA17_Chr4g0065791 | 58.506 | 241 | 85 | 2 | 1 | 241 | 1 | 226 | 7.77e-97 | 282 |
| Msa1216240 | MtrunA17_Chr2g0287281 | 52.466 | 223 | 105 | 1 | 20 | 241 | 22 | 244 | 8.71e-78 | 234 |
| Msa1216240 | MtrunA17_Chr4g0065801 | 94.231 | 52 | 1 | 1 | 1 | 52 | 55 | 104 | 5.75e-27 | 100 |
| Msa1216240 | MtrunA17_Chr3g0077171 | 27.184 | 206 | 136 | 5 | 43 | 240 | 133 | 332 | 4.74e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216240 | AT3G23600.1 | 63.071 | 241 | 87 | 1 | 1 | 241 | 1 | 239 | 5.79e-115 | 329 |
| Msa1216240 | AT3G23600.2 | 62.241 | 241 | 86 | 2 | 1 | 241 | 1 | 236 | 1.74e-111 | 320 |
| Msa1216240 | AT3G23570.3 | 58.921 | 241 | 97 | 1 | 1 | 241 | 1 | 239 | 2.33e-109 | 315 |
| Msa1216240 | AT3G23570.1 | 58.921 | 241 | 97 | 1 | 1 | 241 | 1 | 239 | 2.33e-109 | 315 |
| Msa1216240 | AT3G23570.2 | 58.921 | 241 | 97 | 1 | 1 | 241 | 1 | 239 | 2.33e-109 | 315 |
| Msa1216240 | AT1G35420.3 | 24.091 | 220 | 151 | 6 | 27 | 236 | 56 | 269 | 6.20e-18 | 80.9 |
| Msa1216240 | AT1G35420.1 | 24.091 | 220 | 151 | 6 | 27 | 236 | 92 | 305 | 9.42e-18 | 80.9 |
| Msa1216240 | AT1G35420.2 | 24.091 | 220 | 151 | 6 | 27 | 236 | 97 | 310 | 1.05e-17 | 80.9 |
Find 60 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACAGGCCTTTACCTATT+TGG | 0.169594 | 8_1:+77877721 | Msa1216240:CDS |
| ATGACCTCTGGAGGAGTAAT+TGG | 0.233048 | 8_1:-77879116 | None:intergenic |
| TCTGCAGCCTTCACAGCTTC+TGG | 0.233448 | 8_1:-77879683 | None:intergenic |
| CACAACAGCTTGAATGAGTT+TGG | 0.240772 | 8_1:-77878465 | None:intergenic |
| TAGTTATCTTACCTTATAAT+TGG | 0.260032 | 8_1:-77877397 | None:intergenic |
| CTCTTTGTTTCTGATATCTA+TGG | 0.262067 | 8_1:+77877240 | Msa1216240:CDS |
| ACTAAATAATTCAGAATATA+AGG | 0.268465 | 8_1:-77879898 | None:intergenic |
| AGTAAAGGTGTTTCTGCTAT+TGG | 0.325826 | 8_1:+77878242 | Msa1216240:CDS |
| TTGGAGCTGCTGGTTATTGT+TGG | 0.330733 | 8_1:+77878261 | Msa1216240:CDS |
| TCTCGCATGGCTGGACTATA+AGG | 0.338659 | 8_1:+77879645 | Msa1216240:CDS |
| TGGAGCTGCTGGTTATTGTT+GGG | 0.356952 | 8_1:+77878262 | Msa1216240:CDS |
| GATATGAAGCTCCAATTATA+AGG | 0.362101 | 8_1:+77877386 | Msa1216240:CDS |
| CCCATCAAATCTTGCTGGAT+TGG | 0.365656 | 8_1:+77879711 | Msa1216240:CDS |
| AATATTCCAATTGCTATACT+TGG | 0.381640 | 8_1:+77879080 | Msa1216240:CDS |
| TTCCTAATGTCTCGCATGGC+TGG | 0.401802 | 8_1:+77879636 | Msa1216240:CDS |
| ACCAATCCAGCAAGATTTGA+TGG | 0.410123 | 8_1:-77879712 | None:intergenic |
| TCAAATTGTTTAATGACCTC+TGG | 0.410127 | 8_1:-77879128 | None:intergenic |
| GTCAACACAGTCATCATCAT+AGG | 0.412431 | 8_1:-77877703 | None:intergenic |
| GCTAAGACTGTGTGTGAACT+TGG | 0.413908 | 8_1:+77878437 | Msa1216240:intron |
| CCACTAAAAGAGTTCAGAAT+TGG | 0.423621 | 8_1:-77877144 | None:intergenic |
| TAAACAATTTGAACAAGTCT+TGG | 0.424475 | 8_1:+77879139 | Msa1216240:CDS |
| GAAAAGTACTAACCGGTTCA+TGG | 0.438615 | 8_1:-77877752 | None:intergenic |
| AGAAACAAAGAGAATGGCTT+TGG | 0.446253 | 8_1:-77877229 | None:intergenic |
| GTTTCTGCTATTGGAGCTGC+TGG | 0.446884 | 8_1:+77878251 | Msa1216240:CDS |
| GCAGACAAGGTTGCAGCAGC+TGG | 0.448189 | 8_1:+77877642 | Msa1216240:CDS |
| GGTCTTGATGCTTATCTCAC+TGG | 0.463700 | 8_1:+77877192 | Msa1216240:CDS |
| GTCCAGCCATGCGAGACATT+AGG | 0.464533 | 8_1:-77879638 | None:intergenic |
| AGAGGCCCATCAAATCTTGC+TGG | 0.465174 | 8_1:+77879706 | Msa1216240:CDS |
| AACAAAGAGAATGGCTTTGG+TGG | 0.467774 | 8_1:-77877226 | None:intergenic |
| TCAGCTCCAAGTATAGCAAT+TGG | 0.480783 | 8_1:-77879086 | None:intergenic |
| AGAATGGCTTTGGTGGAAAG+AGG | 0.487874 | 8_1:-77877219 | None:intergenic |
| TGTTAAGTGAGAAATCTTGT+TGG | 0.493971 | 8_1:+77879745 | Msa1216240:exon |
| GGAGCTGCTGGTTATTGTTG+GGG | 0.494209 | 8_1:+77878263 | Msa1216240:CDS |
| GATATCAGAAACAAAGAGAA+TGG | 0.494737 | 8_1:-77877235 | None:intergenic |
| AGCTGTGAAGGCTGCAGAAG+AGG | 0.497607 | 8_1:+77879688 | Msa1216240:CDS |
| GGATCGCCGTAGAAGTAGTC+AGG | 0.500455 | 8_1:-77877681 | None:intergenic |
| TTGGATAAAAGACCATGAAC+CGG | 0.511342 | 8_1:+77877740 | Msa1216240:CDS |
| TCCTCTACTGTGATAGATGA+TGG | 0.512687 | 8_1:-77878497 | None:intergenic |
| GTAGTTCCTGACTACTTCTA+CGG | 0.516675 | 8_1:+77877675 | Msa1216240:CDS |
| GTGAAGGAATCTTGCAGACA+AGG | 0.520292 | 8_1:+77877629 | Msa1216240:intron |
| CTAAAAGAGTTCAGAATTGG+TGG | 0.522787 | 8_1:-77877141 | None:intergenic |
| TGAAGATCCAGAAGCTGTGA+AGG | 0.541502 | 8_1:+77879676 | Msa1216240:CDS |
| ATGATGATGACTGTGTTGAC+AGG | 0.541546 | 8_1:+77877706 | Msa1216240:CDS |
| AGCTTCACAACCCATAATTG+AGG | 0.546962 | 8_1:+77878211 | Msa1216240:CDS |
| ATCGTATATTTATAGGACAA+AGG | 0.551114 | 8_1:+77878182 | Msa1216240:intron |
| GCTGCTGGTTATTGTTGGGG+TGG | 0.553324 | 8_1:+77878266 | Msa1216240:CDS |
| AGTGCAGACAGCAAAACAAA+AGG | 0.560433 | 8_1:+77877071 | None:intergenic |
| ACTCATTCAAGCTGTTGTGT+TGG | 0.565853 | 8_1:+77878469 | Msa1216240:CDS |
| ATATTTCCTAATGTCTCGCA+TGG | 0.567492 | 8_1:+77879632 | Msa1216240:CDS |
| AATTGTTTAATGACCTCTGG+AGG | 0.570776 | 8_1:-77879125 | None:intergenic |
| TCAACACAGTCATCATCATA+GGG | 0.590362 | 8_1:-77877702 | None:intergenic |
| TGCAGCAGCTGGATATTATG+TGG | 0.598014 | 8_1:+77877653 | Msa1216240:CDS |
| CCAATCCAGCAAGATTTGAT+GGG | 0.604758 | 8_1:-77879711 | None:intergenic |
| CTAAGACTGTGTGTGAACTT+GGG | 0.604992 | 8_1:+77878438 | Msa1216240:CDS |
| ATCACAGTAGAGGACATCAA+TGG | 0.607032 | 8_1:+77878506 | Msa1216240:CDS |
| TAAAAGAGTTCAGAATTGGT+GGG | 0.625117 | 8_1:-77877140 | None:intergenic |
| TCCATCATCTATCACAGTAG+AGG | 0.632956 | 8_1:+77878496 | Msa1216240:CDS |
| TGGACGAAGAGCTCATAGAG+TGG | 0.658432 | 8_1:+77879765 | Msa1216240:three_prime_UTR |
| TGATCCAATTACTCCTCCAG+AGG | 0.672082 | 8_1:+77879112 | Msa1216240:CDS |
| ACGAAGAGCTCATAGAGTGG+AGG | 0.675987 | 8_1:+77879768 | Msa1216240:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTAAAAAAAAAATCG+AGG | - | chr8_1:77878888-77878907 | None:intergenic | 10.0% |
| !!! | TCTTATTTTTGAAGTTAAAA+AGG | + | chr8_1:77877959-77877978 | Msa1216240:intron | 15.0% |
| !!! | ATAAAAGTTTGACTTTATAA+CGG | + | chr8_1:77878785-77878804 | Msa1216240:intron | 15.0% |
| !!! | TTTTTTTAAATATTAGTCGT+CGG | + | chr8_1:77878894-77878913 | Msa1216240:intron | 15.0% |
| !!! | ATAAAAGGTACATTGATTAA+AGG | - | chr8_1:77877337-77877356 | None:intergenic | 20.0% |
| !! | TAGTTATCTTACCTTATAAT+TGG | - | chr8_1:77877400-77877419 | None:intergenic | 20.0% |
| !! | CTAAATTAGAAACAGATAAA+AGG | - | chr8_1:77877430-77877449 | None:intergenic | 20.0% |
| !! | TATATGTCATTCTTCTTATT+TGG | + | chr8_1:77877536-77877555 | Msa1216240:intron | 20.0% |
| !! | CATTTGTATATTGAATATCA+TGG | + | chr8_1:77878085-77878104 | Msa1216240:intron | 20.0% |
| !!! | AACTGTAATACATAATTTTC+TGG | + | chr8_1:77878150-77878169 | Msa1216240:intron | 20.0% |
| !! | AATTTGCATATTCTTCAATT+AGG | + | chr8_1:77878562-77878581 | Msa1216240:intron | 20.0% |
| !!! | TATTTGTTTTAATAAGCAGT+AGG | - | chr8_1:77878701-77878720 | None:intergenic | 20.0% |
| !!! | CAAATATTTTCCTTATTCAA+AGG | + | chr8_1:77878715-77878734 | Msa1216240:intron | 20.0% |
| !! | ATATTATTTGCCTTTGAATA+AGG | - | chr8_1:77878728-77878747 | None:intergenic | 20.0% |
| !!! | TAAAAGTTTGACTTTATAAC+GGG | + | chr8_1:77878786-77878805 | Msa1216240:intron | 20.0% |
| !! | AAAAAAAAAATCGAGGAAAT+GGG | - | chr8_1:77878881-77878900 | None:intergenic | 20.0% |
| !! | TAAAAAAAAAATCGAGGAAA+TGG | - | chr8_1:77878882-77878901 | None:intergenic | 20.0% |
| !! | AATAAGTAATTGCTAGAATA+TGG | - | chr8_1:77879041-77879060 | None:intergenic | 20.0% |
| !! | GTATATATATGTATGTGTAA+TGG | - | chr8_1:77879213-77879232 | None:intergenic | 20.0% |
| !! | GTGCTTAAAAAATTTGTATA+AGG | - | chr8_1:77879268-77879287 | None:intergenic | 20.0% |
| !!! | TACAAATTTTTTAAGCACTT+AGG | + | chr8_1:77879270-77879289 | Msa1216240:intron | 20.0% |
| !! | ACTAGTATTAATGTTCAAAT+TGG | - | chr8_1:77879307-77879326 | None:intergenic | 20.0% |
| !!! | ACATAACAAGTCTTATTTTA+AGG | + | chr8_1:77879853-77879872 | Msa1216240:three_prime_UTR | 20.0% |
| ! | AAGCATGTGAAGTTAATAAA+AGG | - | chr8_1:77877352-77877371 | None:intergenic | 25.0% |
| !!! | ACATGCTTTATTTGTTTTGT+AGG | + | chr8_1:77877364-77877383 | Msa1216240:intron | 25.0% |
| !!! | ACTTGAACCAATTTGTTATA+AGG | + | chr8_1:77877454-77877473 | Msa1216240:intron | 25.0% |
| ! | AAGCATACCTTATAACAAAT+TGG | - | chr8_1:77877464-77877483 | None:intergenic | 25.0% |
| ! | AATGACATATAAAGTCAACA+AGG | - | chr8_1:77877527-77877546 | None:intergenic | 25.0% |
| !! | TCTTTTATCCAAATAGGTAA+AGG | - | chr8_1:77877732-77877751 | None:intergenic | 25.0% |
| !!! | ATGATTAAGTGACTTTTTTG+CGG | + | chr8_1:77877889-77877908 | Msa1216240:intron | 25.0% |
| ! | TAACTTCAAAAATAAGAAGC+TGG | - | chr8_1:77877956-77877975 | None:intergenic | 25.0% |
| ! | AAGTGTAATAACATTACACA+AGG | - | chr8_1:77878044-77878063 | None:intergenic | 25.0% |
| !! | TATCATGGATTGTTTCAATT+CGG | + | chr8_1:77878100-77878119 | Msa1216240:intron | 25.0% |
| ! | CTTGCATATCGTATATTTAT+AGG | + | chr8_1:77878175-77878194 | Msa1216240:intron | 25.0% |
| ! | ATCGTATATTTATAGGACAA+AGG | + | chr8_1:77878182-77878201 | Msa1216240:intron | 25.0% |
| !!! | AGAAACACCTTTACTTTTTA+AGG | - | chr8_1:77878237-77878256 | None:intergenic | 25.0% |
| ! | GACAATAAGACTAAAATTGA+TGG | - | chr8_1:77878655-77878674 | None:intergenic | 25.0% |
| !! | AAAAGTTTGACTTTATAACG+GGG | + | chr8_1:77878787-77878806 | Msa1216240:intron | 25.0% |
| ! | GAAAAGTTAAAATTCCAACA+GGG | + | chr8_1:77878809-77878828 | Msa1216240:intron | 25.0% |
| !!! | AATATTCTAGCTTGTCTTTT+AGG | - | chr8_1:77878967-77878986 | None:intergenic | 25.0% |
| ! | AATATTCCAATTGCTATACT+TGG | + | chr8_1:77879080-77879099 | Msa1216240:CDS | 25.0% |
| ! | TAAACAATTTGAACAAGTCT+TGG | + | chr8_1:77879139-77879158 | Msa1216240:CDS | 25.0% |
| ! | TAATGGTAAATAACCACAAA+AGG | - | chr8_1:77879196-77879215 | None:intergenic | 25.0% |
| ! | TAACAGATAGTATCAACTAA+AGG | - | chr8_1:77879335-77879354 | None:intergenic | 25.0% |
| ! | TGAGAATTTACTCATTATGT+TGG | + | chr8_1:77879512-77879531 | Msa1216240:intron | 25.0% |
| GTCAAAGAAACAAAAATGTC+AGG | + | chr8_1:77877093-77877112 | Msa1216240:exon | 30.0% | |
| TAAAAGAGTTCAGAATTGGT+GGG | - | chr8_1:77877143-77877162 | None:intergenic | 30.0% | |
| GATATCAGAAACAAAGAGAA+TGG | - | chr8_1:77877238-77877257 | None:intergenic | 30.0% | |
| !! | CTCTTTGTTTCTGATATCTA+TGG | + | chr8_1:77877240-77877259 | Msa1216240:CDS | 30.0% |
| GATATGAAGCTCCAATTATA+AGG | + | chr8_1:77877386-77877405 | Msa1216240:CDS | 30.0% | |
| ATATAAAGTCAACAAGGATG+TGG | - | chr8_1:77877521-77877540 | None:intergenic | 30.0% | |
| ! | TTTTGTTGATCTGTTTGTGA+AGG | + | chr8_1:77877613-77877632 | Msa1216240:intron | 30.0% |
| ! | TCATGGTCTTTTATCCAAAT+AGG | - | chr8_1:77877738-77877757 | None:intergenic | 30.0% |
| !! | GTCATTAGAAAAGTACTAAC+CGG | - | chr8_1:77877762-77877781 | None:intergenic | 30.0% |
| ! | ACTTTTCTAATGACAGTACT+TGG | + | chr8_1:77877768-77877787 | Msa1216240:intron | 30.0% |
| CTACTAAGGATAGCAAAAAT+TGG | - | chr8_1:77877843-77877862 | None:intergenic | 30.0% | |
| ATTACACTTGCCACATTTAT+AGG | + | chr8_1:77878055-77878074 | Msa1216240:intron | 30.0% | |
| !!! | CTTTTTAAGGCCTCAATTAT+GGG | - | chr8_1:77878224-77878243 | None:intergenic | 30.0% |
| !!! | ACTTTTTAAGGCCTCAATTA+TGG | - | chr8_1:77878225-77878244 | None:intergenic | 30.0% |
| ATTGAGGCCTTAAAAAGTAA+AGG | + | chr8_1:77878227-77878246 | Msa1216240:CDS | 30.0% | |
| GAAAACTGCTATATACACAA+AGG | - | chr8_1:77878326-77878345 | None:intergenic | 30.0% | |
| ! | TGGTATGGATTTTCAATGTT+TGG | + | chr8_1:77878526-77878545 | Msa1216240:intron | 30.0% |
| ! | TAAGACTAAAATTGATGGCA+TGG | - | chr8_1:77878650-77878669 | None:intergenic | 30.0% |
| CATTAAGCTAACACATCTTA+TGG | - | chr8_1:77878765-77878784 | None:intergenic | 30.0% | |
| GGAAAAGTTAAAATTCCAAC+AGG | + | chr8_1:77878808-77878827 | Msa1216240:intron | 30.0% | |
| !! | TACTTATTAGTCTTCCTTTC+AGG | + | chr8_1:77879053-77879072 | Msa1216240:intron | 30.0% |
| TTGGAATATTAACACCTGAA+AGG | - | chr8_1:77879070-77879089 | None:intergenic | 30.0% | |
| TCAAATTGTTTAATGACCTC+TGG | - | chr8_1:77879131-77879150 | None:intergenic | 30.0% | |
| GATAGTATCAACTAAAGGTA+TGG | - | chr8_1:77879330-77879349 | None:intergenic | 30.0% | |
| ! | CTATCTGTTAAGTGATAATG+TGG | + | chr8_1:77879345-77879364 | Msa1216240:intron | 30.0% |
| TGTTAAGTGAGAAATCTTGT+TGG | + | chr8_1:77879745-77879764 | Msa1216240:exon | 30.0% | |
| CTAAAAGAGTTCAGAATTGG+TGG | - | chr8_1:77877144-77877163 | None:intergenic | 35.0% | |
| CCACTAAAAGAGTTCAGAAT+TGG | - | chr8_1:77877147-77877166 | None:intergenic | 35.0% | |
| ! | CCAATTCTGAACTCTTTTAG+TGG | + | chr8_1:77877144-77877163 | Msa1216240:CDS | 35.0% |
| !!! | GACCACCAATTTTTTCAACA+TGG | - | chr8_1:77877176-77877195 | None:intergenic | 35.0% |
| AGAAACAAAGAGAATGGCTT+TGG | - | chr8_1:77877232-77877251 | None:intergenic | 35.0% | |
| TCAACACAGTCATCATCATA+GGG | - | chr8_1:77877705-77877724 | None:intergenic | 35.0% | |
| TTGGATAAAAGACCATGAAC+CGG | + | chr8_1:77877740-77877759 | Msa1216240:CDS | 35.0% | |
| GAGTTATGAAAGCTCTACTA+AGG | - | chr8_1:77877857-77877876 | None:intergenic | 35.0% | |
| AAGTCACTTAATCATAACCG+CGG | - | chr8_1:77877884-77877903 | None:intergenic | 35.0% | |
| !!! | ATTAAGTGACTTTTTTGCGG+TGG | + | chr8_1:77877892-77877911 | Msa1216240:intron | 35.0% |
| ATGCAAACCACCTATAAATG+TGG | - | chr8_1:77878068-77878087 | None:intergenic | 35.0% | |
| !! | AGTAAAGGTGTTTCTGCTAT+TGG | + | chr8_1:77878242-77878261 | Msa1216240:CDS | 35.0% |
| AGGAGAACGAAATAAGTGAA+AGG | - | chr8_1:77878298-77878317 | None:intergenic | 35.0% | |
| ACTGCTATATACACAAAGGA+GGG | - | chr8_1:77878322-77878341 | None:intergenic | 35.0% | |
| AACTGCTATATACACAAAGG+AGG | - | chr8_1:77878323-77878342 | None:intergenic | 35.0% | |
| TAGTCGTCGGTAATTGTATA+AGG | + | chr8_1:77878907-77878926 | Msa1216240:intron | 35.0% | |
| ATACAATTTGGGCTGTATCT+TGG | - | chr8_1:77879000-77879019 | None:intergenic | 35.0% | |
| AATTGTTTAATGACCTCTGG+AGG | - | chr8_1:77879128-77879147 | None:intergenic | 35.0% | |
| AAAGAAGATTCACTGACATC+AGG | - | chr8_1:77879173-77879192 | None:intergenic | 35.0% | |
| ! | GTGAATCTTCTTTCCTTTTG+TGG | + | chr8_1:77879180-77879199 | Msa1216240:intron | 35.0% |
| AACAGTTATAAAACAGGTGG+TGG | - | chr8_1:77879391-77879410 | None:intergenic | 35.0% | |
| AGAGGGAACAGTTATAAAAC+AGG | - | chr8_1:77879397-77879416 | None:intergenic | 35.0% | |
| AGTAAATTCTCACGTAAGTC+TGG | - | chr8_1:77879504-77879523 | None:intergenic | 35.0% | |
| !!! | ATGTATCGTTTTGTTTGTGC+AGG | + | chr8_1:77879592-77879611 | Msa1216240:intron | 35.0% |
| ATATTTCCTAATGTCTCGCA+TGG | + | chr8_1:77879632-77879651 | Msa1216240:CDS | 35.0% | |
| GCTGGCCATGTTGAAAAAAT+TGG | + | chr8_1:77877168-77877187 | Msa1216240:CDS | 40.0% | |
| GGCCATGTTGAAAAAATTGG+TGG | + | chr8_1:77877171-77877190 | Msa1216240:CDS | 40.0% | |
| !! | AACAAAGAGAATGGCTTTGG+TGG | - | chr8_1:77877229-77877248 | None:intergenic | 40.0% |
| GCTAAATGCATTTGTTCTGC+TGG | + | chr8_1:77877584-77877603 | Msa1216240:intron | 40.0% | |
| GTAGTTCCTGACTACTTCTA+CGG | + | chr8_1:77877675-77877694 | Msa1216240:CDS | 40.0% | |
| GTCAACACAGTCATCATCAT+AGG | - | chr8_1:77877706-77877725 | None:intergenic | 40.0% | |
| ! | ATGATGATGACTGTGTTGAC+AGG | + | chr8_1:77877706-77877725 | Msa1216240:CDS | 40.0% |
| TTGACAGGCCTTTACCTATT+TGG | + | chr8_1:77877721-77877740 | Msa1216240:CDS | 40.0% | |
| !! | GAAAAGTACTAACCGGTTCA+TGG | - | chr8_1:77877755-77877774 | None:intergenic | 40.0% |
| ACACTTGCCACATTTATAGG+TGG | + | chr8_1:77878058-77878077 | Msa1216240:intron | 40.0% | |
| AGCTTCACAACCCATAATTG+AGG | + | chr8_1:77878211-77878230 | Msa1216240:CDS | 40.0% | |
| CTATATACACAAAGGAGGGT+AGG | - | chr8_1:77878318-77878337 | None:intergenic | 40.0% | |
| GCTCGTCTTAGGCATAATAT+TGG | + | chr8_1:77878346-77878365 | Msa1216240:intron | 40.0% | |
| CTAAGACTGTGTGTGAACTT+GGG | + | chr8_1:77878438-77878457 | Msa1216240:CDS | 40.0% | |
| CACAACAGCTTGAATGAGTT+TGG | - | chr8_1:77878468-77878487 | None:intergenic | 40.0% | |
| ACTCATTCAAGCTGTTGTGT+TGG | + | chr8_1:77878469-77878488 | Msa1216240:CDS | 40.0% | |
| TCCATCATCTATCACAGTAG+AGG | + | chr8_1:77878496-77878515 | Msa1216240:CDS | 40.0% | |
| TCCTCTACTGTGATAGATGA+TGG | - | chr8_1:77878500-77878519 | None:intergenic | 40.0% | |
| ATCACAGTAGAGGACATCAA+TGG | + | chr8_1:77878506-77878525 | Msa1216240:CDS | 40.0% | |
| AGTAGAGGACATCAATGGTA+TGG | + | chr8_1:77878511-77878530 | Msa1216240:intron | 40.0% | |
| TTATTGTCTGCATCCTGACA+TGG | + | chr8_1:77878667-77878686 | Msa1216240:intron | 40.0% | |
| ! | CATTTTACAATCGTCCCTGT+TGG | - | chr8_1:77878826-77878845 | None:intergenic | 40.0% |
| CAACAGGGACGATTGTAAAA+TGG | + | chr8_1:77878824-77878843 | Msa1216240:intron | 40.0% | |
| TCAGCTCCAAGTATAGCAAT+TGG | - | chr8_1:77879089-77879108 | None:intergenic | 40.0% | |
| TATACATTTCTCTCTGTGCG+TGG | + | chr8_1:77879228-77879247 | Msa1216240:intron | 40.0% | |
| ! | TATAAAACAGGTGGTGGTGA+TGG | - | chr8_1:77879385-77879404 | None:intergenic | 40.0% |
| GGGAACAGTTATAAAACAGG+TGG | - | chr8_1:77879394-77879413 | None:intergenic | 40.0% | |
| !! | TAACTGTTCCCTCTAGCTTT+AGG | + | chr8_1:77879403-77879422 | Msa1216240:intron | 40.0% |
| !! | AACTGTTCCCTCTAGCTTTA+GGG | + | chr8_1:77879404-77879423 | Msa1216240:intron | 40.0% |
| AACTAGTCCCTAAAGCTAGA+GGG | - | chr8_1:77879414-77879433 | None:intergenic | 40.0% | |
| TAACTAGTCCCTAAAGCTAG+AGG | - | chr8_1:77879415-77879434 | None:intergenic | 40.0% | |
| CCAATCCAGCAAGATTTGAT+GGG | - | chr8_1:77879714-77879733 | None:intergenic | 40.0% | |
| ACCAATCCAGCAAGATTTGA+TGG | - | chr8_1:77879715-77879734 | None:intergenic | 40.0% | |
| ! | CTGAACTCTTTTAGTGGAGC+TGG | + | chr8_1:77877150-77877169 | Msa1216240:CDS | 45.0% |
| GGTCTTGATGCTTATCTCAC+TGG | + | chr8_1:77877192-77877211 | Msa1216240:CDS | 45.0% | |
| !! | AGAATGGCTTTGGTGGAAAG+AGG | - | chr8_1:77877222-77877241 | None:intergenic | 45.0% |
| GTGAAGGAATCTTGCAGACA+AGG | + | chr8_1:77877629-77877648 | Msa1216240:intron | 45.0% | |
| TGCAGCAGCTGGATATTATG+TGG | + | chr8_1:77877653-77877672 | Msa1216240:CDS | 45.0% | |
| GCTTTCATAACTCTGATCCG+CGG | + | chr8_1:77877864-77877883 | Msa1216240:intron | 45.0% | |
| CAAACATCGTAGCGTGCATT+TGG | - | chr8_1:77878021-77878040 | None:intergenic | 45.0% | |
| ! | TTGGAGCTGCTGGTTATTGT+TGG | + | chr8_1:77878261-77878280 | Msa1216240:CDS | 45.0% |
| ! | TGGAGCTGCTGGTTATTGTT+GGG | + | chr8_1:77878262-77878281 | Msa1216240:CDS | 45.0% |
| ! | TAGCAGTTTTCGCTCGTCTT+AGG | + | chr8_1:77878335-77878354 | Msa1216240:intron | 45.0% |
| GCTAAGACTGTGTGTGAACT+TGG | + | chr8_1:77878437-77878456 | Msa1216240:intron | 45.0% | |
| ATAGACAAGAAGCTGCAGCA+TGG | - | chr8_1:77878625-77878644 | None:intergenic | 45.0% | |
| GTAGGTAAACACTCCATGTC+AGG | - | chr8_1:77878683-77878702 | None:intergenic | 45.0% | |
| TGATCCAATTACTCCTCCAG+AGG | + | chr8_1:77879112-77879131 | Msa1216240:CDS | 45.0% | |
| ! | ATGACCTCTGGAGGAGTAAT+TGG | - | chr8_1:77879119-77879138 | None:intergenic | 45.0% |
| TGAAGATCCAGAAGCTGTGA+AGG | + | chr8_1:77879676-77879695 | Msa1216240:CDS | 45.0% | |
| CCCATCAAATCTTGCTGGAT+TGG | + | chr8_1:77879711-77879730 | Msa1216240:CDS | 45.0% | |
| !! | TAAATTATATTATACAATTT+GGG | - | chr8_1:77879011-77879030 | None:intergenic | 5.0% |
| !! | TTAAATTATATTATACAATT+TGG | - | chr8_1:77879012-77879031 | None:intergenic | 5.0% |
| GGCATGTGAATGCATGACAG+TGG | + | chr8_1:77877980-77877999 | Msa1216240:intron | 50.0% | |
| GTTTCTGCTATTGGAGCTGC+TGG | + | chr8_1:77878251-77878270 | Msa1216240:CDS | 50.0% | |
| ! | GGAGCTGCTGGTTATTGTTG+GGG | + | chr8_1:77878263-77878282 | Msa1216240:CDS | 50.0% |
| TTCCTAATGTCTCGCATGGC+TGG | + | chr8_1:77879636-77879655 | Msa1216240:CDS | 50.0% | |
| TCTCGCATGGCTGGACTATA+AGG | + | chr8_1:77879645-77879664 | Msa1216240:CDS | 50.0% | |
| AGAGGCCCATCAAATCTTGC+TGG | + | chr8_1:77879706-77879725 | Msa1216240:CDS | 50.0% | |
| TGGACGAAGAGCTCATAGAG+TGG | + | chr8_1:77879765-77879784 | Msa1216240:three_prime_UTR | 50.0% | |
| ACGAAGAGCTCATAGAGTGG+AGG | + | chr8_1:77879768-77879787 | Msa1216240:three_prime_UTR | 50.0% | |
| GGATCGCCGTAGAAGTAGTC+AGG | - | chr8_1:77877684-77877703 | None:intergenic | 55.0% | |
| ! | GCTGCTGGTTATTGTTGGGG+TGG | + | chr8_1:77878266-77878285 | Msa1216240:CDS | 55.0% |
| GTCCAGCCATGCGAGACATT+AGG | - | chr8_1:77879641-77879660 | None:intergenic | 55.0% | |
| TCTGCAGCCTTCACAGCTTC+TGG | - | chr8_1:77879686-77879705 | None:intergenic | 55.0% | |
| AGCTGTGAAGGCTGCAGAAG+AGG | + | chr8_1:77879688-77879707 | Msa1216240:CDS | 55.0% | |
| GCAGACAAGGTTGCAGCAGC+TGG | + | chr8_1:77877642-77877661 | Msa1216240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 77877075 | 77879917 | 77877075 | ID=Msa1216240;Name=Msa1216240 |
| chr8_1 | mRNA | 77877075 | 77879917 | 77877075 | ID=Msa1216240-mRNA-1;Parent=Msa1216240;Name=Msa1216240-mRNA-1;_AED=0.44;_eAED=0.44;_QI=33|1|1|1|1|1|7|163|241 |
| chr8_1 | exon | 77877075 | 77877261 | 77877075 | ID=Msa1216240-mRNA-1:exon:26949;Parent=Msa1216240-mRNA-1 |
| chr8_1 | exon | 77877386 | 77877407 | 77877386 | ID=Msa1216240-mRNA-1:exon:26950;Parent=Msa1216240-mRNA-1 |
| chr8_1 | exon | 77877635 | 77877761 | 77877635 | ID=Msa1216240-mRNA-1:exon:26951;Parent=Msa1216240-mRNA-1 |
| chr8_1 | exon | 77878197 | 77878287 | 77878197 | ID=Msa1216240-mRNA-1:exon:26952;Parent=Msa1216240-mRNA-1 |
| chr8_1 | exon | 77878438 | 77878527 | 77878438 | ID=Msa1216240-mRNA-1:exon:26953;Parent=Msa1216240-mRNA-1 |
| chr8_1 | exon | 77879075 | 77879175 | 77879075 | ID=Msa1216240-mRNA-1:exon:26954;Parent=Msa1216240-mRNA-1 |
| chr8_1 | exon | 77879614 | 77879917 | 77879614 | ID=Msa1216240-mRNA-1:exon:26955;Parent=Msa1216240-mRNA-1 |
| chr8_1 | five_prime_UTR | 77877075 | 77877107 | 77877075 | ID=Msa1216240-mRNA-1:five_prime_utr;Parent=Msa1216240-mRNA-1 |
| chr8_1 | CDS | 77877108 | 77877261 | 77877108 | ID=Msa1216240-mRNA-1:cds;Parent=Msa1216240-mRNA-1 |
| chr8_1 | CDS | 77877386 | 77877407 | 77877386 | ID=Msa1216240-mRNA-1:cds;Parent=Msa1216240-mRNA-1 |
| chr8_1 | CDS | 77877635 | 77877761 | 77877635 | ID=Msa1216240-mRNA-1:cds;Parent=Msa1216240-mRNA-1 |
| chr8_1 | CDS | 77878197 | 77878287 | 77878197 | ID=Msa1216240-mRNA-1:cds;Parent=Msa1216240-mRNA-1 |
| chr8_1 | CDS | 77878438 | 77878527 | 77878438 | ID=Msa1216240-mRNA-1:cds;Parent=Msa1216240-mRNA-1 |
| chr8_1 | CDS | 77879075 | 77879175 | 77879075 | ID=Msa1216240-mRNA-1:cds;Parent=Msa1216240-mRNA-1 |
| chr8_1 | CDS | 77879614 | 77879754 | 77879614 | ID=Msa1216240-mRNA-1:cds;Parent=Msa1216240-mRNA-1 |
| chr8_1 | three_prime_UTR | 77879755 | 77879917 | 77879755 | ID=Msa1216240-mRNA-1:three_prime_utr;Parent=Msa1216240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
