Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216490 | sp|Q9ZT66|E134_MAIZE | 42.051 | 195 | 103 | 4 | 6 | 194 | 29 | 219 | 9.85e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216490 | A0A072US82 | 97.490 | 239 | 6 | 0 | 1 | 239 | 55 | 293 | 2.33e-169 | 478 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030050 | Msa1216490 | 0.826015 | 3.421172e-54 | -8.615850e-47 |
| Msa0615200 | Msa1216490 | 0.815696 | 8.097849e-52 | -8.615850e-47 |
| Msa0654090 | Msa1216490 | 0.800240 | 1.581536e-48 | -8.615850e-47 |
| Msa0698280 | Msa1216490 | 0.803746 | 3.009545e-49 | -8.615850e-47 |
| Msa0333770 | Msa1216490 | 0.803314 | 3.698475e-49 | -8.615850e-47 |
| Msa1216240 | Msa1216490 | 0.890897 | 6.503018e-74 | -8.615850e-47 |
| Msa1216490 | Msa1262910 | 0.818054 | 2.394939e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216490 | MtrunA17_Chr4g0065821 | 78.661 | 239 | 46 | 1 | 1 | 239 | 1 | 234 | 4.14e-136 | 382 |
| Msa1216490 | MtrunA17_Chr4g0065781 | 66.946 | 239 | 78 | 1 | 1 | 239 | 1 | 238 | 1.34e-110 | 317 |
| Msa1216490 | MtrunA17_Chr4g0065811 | 97.945 | 146 | 3 | 0 | 94 | 239 | 1 | 146 | 6.39e-101 | 289 |
| Msa1216490 | MtrunA17_Chr4g0065791 | 58.996 | 239 | 85 | 1 | 1 | 239 | 1 | 226 | 7.29e-99 | 287 |
| Msa1216490 | MtrunA17_Chr2g0287281 | 52.466 | 223 | 105 | 1 | 18 | 239 | 22 | 244 | 3.50e-78 | 235 |
| Msa1216490 | MtrunA17_Chr4g0065801 | 98.000 | 50 | 1 | 0 | 1 | 50 | 55 | 104 | 6.48e-29 | 105 |
| Msa1216490 | MtrunA17_Chr3g0077171 | 26.699 | 206 | 137 | 5 | 41 | 238 | 133 | 332 | 1.19e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216490 | AT3G23600.1 | 63.180 | 239 | 88 | 0 | 1 | 239 | 1 | 239 | 1.92e-116 | 332 |
| Msa1216490 | AT3G23600.2 | 62.343 | 239 | 87 | 1 | 1 | 239 | 1 | 236 | 5.53e-113 | 323 |
| Msa1216490 | AT3G23570.3 | 59.833 | 239 | 96 | 0 | 1 | 239 | 1 | 239 | 4.70e-112 | 322 |
| Msa1216490 | AT3G23570.1 | 59.833 | 239 | 96 | 0 | 1 | 239 | 1 | 239 | 4.70e-112 | 322 |
| Msa1216490 | AT3G23570.2 | 59.833 | 239 | 96 | 0 | 1 | 239 | 1 | 239 | 4.70e-112 | 322 |
| Msa1216490 | AT1G35420.3 | 24.091 | 220 | 151 | 6 | 25 | 234 | 56 | 269 | 3.69e-18 | 81.6 |
| Msa1216490 | AT1G35420.2 | 24.091 | 220 | 151 | 6 | 25 | 234 | 97 | 310 | 6.33e-18 | 81.6 |
| Msa1216490 | AT1G35420.1 | 24.091 | 220 | 151 | 6 | 25 | 234 | 92 | 305 | 6.43e-18 | 81.3 |
Find 63 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACCTCTGGAGGAGTAAT+TGG | 0.233048 | 8_1:-78235831 | None:intergenic |
| TCTGCAGCCTTCACAGCTTC+TGG | 0.233448 | 8_1:-78236396 | None:intergenic |
| CACAACAGCTTGAATGAGTT+TGG | 0.240772 | 8_1:-78235234 | None:intergenic |
| TTGACAGGCCTTTACCTATT+TGG | 0.254835 | 8_1:+78234508 | Msa1216490:CDS |
| TAGTTATCTTACCTTATAAT+TGG | 0.260032 | 8_1:-78234217 | None:intergenic |
| CTCTTTGTTTCTGATATCTA+TGG | 0.262067 | 8_1:+78234060 | Msa1216490:CDS |
| ACTAAATAATTCAGAATATA+AGG | 0.268465 | 8_1:-78236608 | None:intergenic |
| AGTAAAGGTGTTTCTGCTAT+TGG | 0.325826 | 8_1:+78235011 | Msa1216490:CDS |
| TTGGAGCTGCTGGTTATTGT+TGG | 0.330733 | 8_1:+78235030 | Msa1216490:CDS |
| TCATGGTCTTTCATCCAAAT+AGG | 0.333988 | 8_1:-78234522 | None:intergenic |
| TCTCGCATGGCTGGACTATA+AGG | 0.338659 | 8_1:+78236358 | Msa1216490:CDS |
| TGGAGCTGCTGGTTATTGTT+GGG | 0.356952 | 8_1:+78235031 | Msa1216490:CDS |
| GATATGAAGCTCCAATTATA+AGG | 0.362101 | 8_1:+78234206 | Msa1216490:CDS |
| CCCATCAAATCTTGCTGGAT+TGG | 0.365656 | 8_1:+78236424 | Msa1216490:CDS |
| AATATTCCAATTGCTATACT+TGG | 0.381640 | 8_1:+78235795 | Msa1216490:CDS |
| TTCCTAATGTCTCGCATGGC+TGG | 0.401802 | 8_1:+78236349 | Msa1216490:CDS |
| GCAGACAAGGTTGCGGCAGC+TGG | 0.406936 | 8_1:+78234429 | Msa1216490:CDS |
| ACCAATCCAGCAAGATTTGA+TGG | 0.410123 | 8_1:-78236425 | None:intergenic |
| TCAAATTGTTTAATGACCTC+TGG | 0.410127 | 8_1:-78235843 | None:intergenic |
| GTCAACACAGTCATCATCAT+AGG | 0.412431 | 8_1:-78234490 | None:intergenic |
| GCTAAGACTGTGTGTGAACT+TGG | 0.413908 | 8_1:+78235206 | Msa1216490:intron |
| CCACTAAAAGAGTTCAGAAT+TGG | 0.423621 | 8_1:-78233964 | None:intergenic |
| TAAACAATTTGAACAAGTCT+TGG | 0.424475 | 8_1:+78235854 | Msa1216490:CDS |
| AACAAGTACTAACCGGTTCA+TGG | 0.432506 | 8_1:-78234539 | None:intergenic |
| AGAAACAAAGAGAATGGCTT+TGG | 0.446253 | 8_1:-78234049 | None:intergenic |
| GTTTCTGCTATTGGAGCTGC+TGG | 0.446884 | 8_1:+78235020 | Msa1216490:CDS |
| GGTCTTGATGCTTATCTCAC+TGG | 0.463700 | 8_1:+78234012 | Msa1216490:CDS |
| GTCCAGCCATGCGAGACATT+AGG | 0.464533 | 8_1:-78236351 | None:intergenic |
| AGAGGCCCATCAAATCTTGC+TGG | 0.465174 | 8_1:+78236419 | Msa1216490:CDS |
| AACAAAGAGAATGGCTTTGG+TGG | 0.467774 | 8_1:-78234046 | None:intergenic |
| TCAGCTCCAAGTATAGCAAT+TGG | 0.480783 | 8_1:-78235801 | None:intergenic |
| AGAATGGCTTTGGTGGAAAG+AGG | 0.487874 | 8_1:-78234039 | None:intergenic |
| TGTTAAGTGAGAAATCTTGT+TGG | 0.493971 | 8_1:+78236458 | Msa1216490:exon |
| GGAGCTGCTGGTTATTGTTG+GGG | 0.494209 | 8_1:+78235032 | Msa1216490:CDS |
| GATATCAGAAACAAAGAGAA+TGG | 0.494737 | 8_1:-78234055 | None:intergenic |
| AGCTGTGAAGGCTGCAGAAG+AGG | 0.497607 | 8_1:+78236401 | Msa1216490:CDS |
| GGATCGCCGTAGAAGTAGTC+AGG | 0.500455 | 8_1:-78234468 | None:intergenic |
| TCCTCTACTGTGATAGATGA+TGG | 0.512687 | 8_1:-78235266 | None:intergenic |
| GTAGTTCCTGACTACTTCTA+CGG | 0.516675 | 8_1:+78234462 | Msa1216490:CDS |
| TTGGATGAAAGACCATGAAC+CGG | 0.520257 | 8_1:+78234527 | Msa1216490:CDS |
| GTGAAGGAATCTTGCAGACA+AGG | 0.520292 | 8_1:+78234416 | Msa1216490:intron |
| CTAAAAGAGTTCAGAATTGG+TGG | 0.522787 | 8_1:-78233961 | None:intergenic |
| TGAAGATCCAGAAGCTGTGA+AGG | 0.541502 | 8_1:+78236389 | Msa1216490:CDS |
| ATGATGATGACTGTGTTGAC+AGG | 0.541546 | 8_1:+78234493 | Msa1216490:CDS |
| AGCTTCACAACCCATAATTG+AGG | 0.546962 | 8_1:+78234980 | Msa1216490:CDS |
| ATCGTATATTTATAGGACAA+AGG | 0.551114 | 8_1:+78234951 | Msa1216490:intron |
| GCTGCTGGTTATTGTTGGGG+TGG | 0.553324 | 8_1:+78235035 | Msa1216490:CDS |
| AGTGCAGACAGCAAAACAAA+AGG | 0.560433 | 8_1:+78233897 | None:intergenic |
| ACTCATTCAAGCTGTTGTGT+TGG | 0.565853 | 8_1:+78235238 | Msa1216490:CDS |
| ATATTTCCTAATGTCTCGCA+TGG | 0.567492 | 8_1:+78236345 | Msa1216490:CDS |
| AATTGTTTAATGACCTCTGG+AGG | 0.570776 | 8_1:-78235840 | None:intergenic |
| TCTTTCATCCAAATAGGTAA+AGG | 0.574508 | 8_1:-78234516 | None:intergenic |
| GAATCTTGCAGACAAGGTTG+CGG | 0.587625 | 8_1:+78234422 | Msa1216490:CDS |
| TCAACACAGTCATCATCATA+GGG | 0.590362 | 8_1:-78234489 | None:intergenic |
| TGCGGCAGCTGGATATTATG+TGG | 0.595995 | 8_1:+78234440 | Msa1216490:CDS |
| CCAATCCAGCAAGATTTGAT+GGG | 0.604758 | 8_1:-78236424 | None:intergenic |
| CTAAGACTGTGTGTGAACTT+GGG | 0.604992 | 8_1:+78235207 | Msa1216490:CDS |
| ATCACAGTAGAGGACATCAA+TGG | 0.607032 | 8_1:+78235275 | Msa1216490:CDS |
| TAAAAGAGTTCAGAATTGGT+GGG | 0.625117 | 8_1:-78233960 | None:intergenic |
| TCCATCATCTATCACAGTAG+AGG | 0.632956 | 8_1:+78235265 | Msa1216490:CDS |
| TGGACGAAGAGCTCATAGAG+TGG | 0.658432 | 8_1:+78236478 | Msa1216490:three_prime_UTR |
| TGATCCAATTACTCCTCCAG+AGG | 0.672082 | 8_1:+78235827 | Msa1216490:CDS |
| ACGAAGAGCTCATAGAGTGG+AGG | 0.675987 | 8_1:+78236481 | Msa1216490:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAGGTATATTGATTAA+AGG | - | chr8_1:78234157-78234176 | None:intergenic | 15.0% |
| !!! | TATATGTCATTCTTTTTATT+TGG | + | chr8_1:78234323-78234342 | Msa1216490:intron | 15.0% |
| !!! | TTCTTATTTTGAAGTTAAAA+AGG | + | chr8_1:78234728-78234747 | Msa1216490:intron | 15.0% |
| !!! | ATATAAGTTTGACTTTAAAA+CGG | + | chr8_1:78235519-78235538 | Msa1216490:intron | 15.0% |
| !! | TAGTTATCTTACCTTATAAT+TGG | - | chr8_1:78234220-78234239 | None:intergenic | 20.0% |
| !! | CTAAATTAGAAACAGATAAA+AGG | - | chr8_1:78234250-78234269 | None:intergenic | 20.0% |
| !! | CATTTGTATATTGAATATCA+TGG | + | chr8_1:78234854-78234873 | Msa1216490:intron | 20.0% |
| !! | AATTTGCATATTCTTCAATT+AGG | + | chr8_1:78235328-78235347 | Msa1216490:intron | 20.0% |
| !!! | CAAATATTTTCCTTATTCAA+AGG | + | chr8_1:78235449-78235468 | Msa1216490:intron | 20.0% |
| !! | ATATTATTTGCCTTTGAATA+AGG | - | chr8_1:78235462-78235481 | None:intergenic | 20.0% |
| !!! | TATAAGTTTGACTTTAAAAC+GGG | + | chr8_1:78235520-78235539 | Msa1216490:intron | 20.0% |
| !!! | TTATTAGTGTCACTTTAATT+AGG | + | chr8_1:78235581-78235600 | Msa1216490:intron | 20.0% |
| !!! | TATTAGTGTCACTTTAATTA+GGG | + | chr8_1:78235582-78235601 | Msa1216490:intron | 20.0% |
| !!! | ATAATATTCTAGCTTATCTT+TGG | + | chr8_1:78235609-78235628 | Msa1216490:intron | 20.0% |
| !!! | TTATCTTTGGTAATTGTATA+AGG | + | chr8_1:78235622-78235641 | Msa1216490:intron | 20.0% |
| !!! | AATATTCTAGCTTATCTTTT+AGG | - | chr8_1:78235682-78235701 | None:intergenic | 20.0% |
| !! | AATAAGTAATTGCTAGAATA+TGG | - | chr8_1:78235756-78235775 | None:intergenic | 20.0% |
| !! | ATGTATATATGTATGTGTAA+TGG | - | chr8_1:78235928-78235947 | None:intergenic | 20.0% |
| !! | GTGCTTAAAAAATTTGTATA+AGG | - | chr8_1:78235981-78236000 | None:intergenic | 20.0% |
| !!! | TACAAATTTTTTAAGCACTT+AGG | + | chr8_1:78235983-78236002 | Msa1216490:intron | 20.0% |
| !! | ACTAGTATTAATGTTCAAAT+TGG | - | chr8_1:78236020-78236039 | None:intergenic | 20.0% |
| !!! | AGAACATAAGTCTTATTTTA+AGG | + | chr8_1:78236563-78236582 | Msa1216490:three_prime_UTR | 20.0% |
| ! | AAGCATGTGAAGTTAATAAA+AGG | - | chr8_1:78234172-78234191 | None:intergenic | 25.0% |
| !!! | ACATGCTTTATTTGTTTTGT+AGG | + | chr8_1:78234184-78234203 | Msa1216490:intron | 25.0% |
| !!! | ACTTGAACCAATTTGTTATA+AGG | + | chr8_1:78234274-78234293 | Msa1216490:intron | 25.0% |
| ! | AAGCATACCTTATAACAAAT+TGG | - | chr8_1:78234284-78234303 | None:intergenic | 25.0% |
| ! | ATTAACAAACAAGTACTAAC+CGG | - | chr8_1:78234549-78234568 | None:intergenic | 25.0% |
| !!! | ATGATTAAGTGACTTTTTTG+CGG | + | chr8_1:78234659-78234678 | Msa1216490:intron | 25.0% |
| ! | TTAACTTCAAAATAAGAAGC+TGG | - | chr8_1:78234726-78234745 | None:intergenic | 25.0% |
| ! | AAGTGTAATAACATTACACA+AGG | - | chr8_1:78234813-78234832 | None:intergenic | 25.0% |
| !! | TATCATGGATTGTTTCAATT+CGG | + | chr8_1:78234869-78234888 | Msa1216490:intron | 25.0% |
| !! | AACTGTGATACATAATTTTC+TGG | + | chr8_1:78234919-78234938 | Msa1216490:intron | 25.0% |
| ! | CTTGCATATCGTATATTTAT+AGG | + | chr8_1:78234944-78234963 | Msa1216490:intron | 25.0% |
| ! | ATCGTATATTTATAGGACAA+AGG | + | chr8_1:78234951-78234970 | Msa1216490:intron | 25.0% |
| !!! | AGAAACACCTTTACTTTTTA+AGG | - | chr8_1:78235006-78235025 | None:intergenic | 25.0% |
| ! | TATTTGTTCTAATAAGCAGT+AGG | - | chr8_1:78235435-78235454 | None:intergenic | 25.0% |
| !!! | ATAAGTTTGACTTTAAAACG+GGG | + | chr8_1:78235521-78235540 | Msa1216490:intron | 25.0% |
| ! | GAAAAGTTAAAATTCCAACA+GGG | + | chr8_1:78235543-78235562 | Msa1216490:intron | 25.0% |
| !!! | ATTAGTGTCACTTTAATTAG+GGG | + | chr8_1:78235583-78235602 | Msa1216490:intron | 25.0% |
| ! | AATATTCCAATTGCTATACT+TGG | + | chr8_1:78235795-78235814 | Msa1216490:CDS | 25.0% |
| ! | TAAACAATTTGAACAAGTCT+TGG | + | chr8_1:78235854-78235873 | Msa1216490:CDS | 25.0% |
| ! | TAACAGATAGTATCAACTAA+AGG | - | chr8_1:78236048-78236067 | None:intergenic | 25.0% |
| ! | TGAGAATTTACTCATTATGT+TGG | + | chr8_1:78236225-78236244 | Msa1216490:intron | 25.0% |
| GTCAAAGAAACAAAAATGTC+AGG | + | chr8_1:78233919-78233938 | Msa1216490:exon | 30.0% | |
| TAAAAGAGTTCAGAATTGGT+GGG | - | chr8_1:78233963-78233982 | None:intergenic | 30.0% | |
| GATATCAGAAACAAAGAGAA+TGG | - | chr8_1:78234058-78234077 | None:intergenic | 30.0% | |
| !! | CTCTTTGTTTCTGATATCTA+TGG | + | chr8_1:78234060-78234079 | Msa1216490:CDS | 30.0% |
| GATATGAAGCTCCAATTATA+AGG | + | chr8_1:78234206-78234225 | Msa1216490:CDS | 30.0% | |
| ! | TTTTGTTGATCTGTTTGTGA+AGG | + | chr8_1:78234400-78234419 | Msa1216490:intron | 30.0% |
| TCTTTCATCCAAATAGGTAA+AGG | - | chr8_1:78234519-78234538 | None:intergenic | 30.0% | |
| AAGTCACTTAATCATAACTG+CGG | - | chr8_1:78234654-78234673 | None:intergenic | 30.0% | |
| ATTACACTTGCCACATTTAT+AGG | + | chr8_1:78234824-78234843 | Msa1216490:intron | 30.0% | |
| !!! | CTTTTTAAGGCCTCAATTAT+GGG | - | chr8_1:78234993-78235012 | None:intergenic | 30.0% |
| !!! | ACTTTTTAAGGCCTCAATTA+TGG | - | chr8_1:78234994-78235013 | None:intergenic | 30.0% |
| ATTGAGGCCTTAAAAAGTAA+AGG | + | chr8_1:78234996-78235015 | Msa1216490:CDS | 30.0% | |
| AAGAAAACCAAACAAGTGAA+AGG | - | chr8_1:78235067-78235086 | None:intergenic | 30.0% | |
| ACTGATATATACACAGAGTA+GGG | - | chr8_1:78235091-78235110 | None:intergenic | 30.0% | |
| AACTGATATATACACAGAGT+AGG | - | chr8_1:78235092-78235111 | None:intergenic | 30.0% | |
| ! | TGGTATGGATTTTCAATGTT+TGG | + | chr8_1:78235295-78235314 | Msa1216490:intron | 30.0% |
| CATTAAGCTAACACATCTTA+TGG | - | chr8_1:78235499-78235518 | None:intergenic | 30.0% | |
| GGAAAAGTTAAAATTCCAAC+AGG | + | chr8_1:78235542-78235561 | Msa1216490:intron | 30.0% | |
| !! | ATACAATTTGGGTTGTATCT+TGG | - | chr8_1:78235715-78235734 | None:intergenic | 30.0% |
| !! | TACTTATTAGTCTTCCTTTC+AGG | + | chr8_1:78235768-78235787 | Msa1216490:intron | 30.0% |
| TTGGAATATTAACACCTGAA+AGG | - | chr8_1:78235785-78235804 | None:intergenic | 30.0% | |
| TCAAATTGTTTAATGACCTC+TGG | - | chr8_1:78235846-78235865 | None:intergenic | 30.0% | |
| ! | GTGAATCTTCTTTCTTTTTG+TGG | + | chr8_1:78235895-78235914 | Msa1216490:intron | 30.0% |
| GATAGTATCAACTAAAGGTA+TGG | - | chr8_1:78236043-78236062 | None:intergenic | 30.0% | |
| ! | CTATCTGTTAAGTGATAATG+TGG | + | chr8_1:78236058-78236077 | Msa1216490:intron | 30.0% |
| TGTTAAGTGAGAAATCTTGT+TGG | + | chr8_1:78236458-78236477 | Msa1216490:exon | 30.0% | |
| CTAAAAGAGTTCAGAATTGG+TGG | - | chr8_1:78233964-78233983 | None:intergenic | 35.0% | |
| CCACTAAAAGAGTTCAGAAT+TGG | - | chr8_1:78233967-78233986 | None:intergenic | 35.0% | |
| ! | CCAATTCTGAACTCTTTTAG+TGG | + | chr8_1:78233964-78233983 | Msa1216490:CDS | 35.0% |
| !!! | GACCACCAATTTTTTCAACA+TGG | - | chr8_1:78233996-78234015 | None:intergenic | 35.0% |
| AGAAACAAAGAGAATGGCTT+TGG | - | chr8_1:78234052-78234071 | None:intergenic | 35.0% | |
| TCAACACAGTCATCATCATA+GGG | - | chr8_1:78234492-78234511 | None:intergenic | 35.0% | |
| TCATGGTCTTTCATCCAAAT+AGG | - | chr8_1:78234525-78234544 | None:intergenic | 35.0% | |
| CTACTAAGGATGGCAAAAAT+TGG | - | chr8_1:78234613-78234632 | None:intergenic | 35.0% | |
| TATGAAAGCTCTACTAAGGA+TGG | - | chr8_1:78234623-78234642 | None:intergenic | 35.0% | |
| GAGTTATGAAAGCTCTACTA+AGG | - | chr8_1:78234627-78234646 | None:intergenic | 35.0% | |
| !!! | ATTAAGTGACTTTTTTGCGG+TGG | + | chr8_1:78234662-78234681 | Msa1216490:intron | 35.0% |
| ATGCAAACCACCTATAAATG+TGG | - | chr8_1:78234837-78234856 | None:intergenic | 35.0% | |
| !! | AGTAAAGGTGTTTCTGCTAT+TGG | + | chr8_1:78235011-78235030 | Msa1216490:CDS | 35.0% |
| AATTGTTTAATGACCTCTGG+AGG | - | chr8_1:78235843-78235862 | None:intergenic | 35.0% | |
| AAAGAAGATTCACTGACATC+AGG | - | chr8_1:78235888-78235907 | None:intergenic | 35.0% | |
| TATACATTTCTCTCTGTGTG+TGG | + | chr8_1:78235941-78235960 | Msa1216490:intron | 35.0% | |
| AACAGTTATAAAACAGGTGG+TGG | - | chr8_1:78236104-78236123 | None:intergenic | 35.0% | |
| AGAGGGAACAGTTATAAAAC+AGG | - | chr8_1:78236110-78236129 | None:intergenic | 35.0% | |
| AGTAAATTCTCACGTAAGTC+TGG | - | chr8_1:78236217-78236236 | None:intergenic | 35.0% | |
| !!! | ATGTATCGTTTTGTTTGTGC+AGG | + | chr8_1:78236305-78236324 | Msa1216490:intron | 35.0% |
| ATATTTCCTAATGTCTCGCA+TGG | + | chr8_1:78236345-78236364 | Msa1216490:CDS | 35.0% | |
| GCTGGCCATGTTGAAAAAAT+TGG | + | chr8_1:78233988-78234007 | Msa1216490:CDS | 40.0% | |
| GGCCATGTTGAAAAAATTGG+TGG | + | chr8_1:78233991-78234010 | Msa1216490:CDS | 40.0% | |
| !! | AACAAAGAGAATGGCTTTGG+TGG | - | chr8_1:78234049-78234068 | None:intergenic | 40.0% |
| GCTAAATGCATTTGTTCTGC+TGG | + | chr8_1:78234371-78234390 | Msa1216490:intron | 40.0% | |
| GTAGTTCCTGACTACTTCTA+CGG | + | chr8_1:78234462-78234481 | Msa1216490:CDS | 40.0% | |
| GTCAACACAGTCATCATCAT+AGG | - | chr8_1:78234493-78234512 | None:intergenic | 40.0% | |
| ! | ATGATGATGACTGTGTTGAC+AGG | + | chr8_1:78234493-78234512 | Msa1216490:CDS | 40.0% |
| TTGACAGGCCTTTACCTATT+TGG | + | chr8_1:78234508-78234527 | Msa1216490:CDS | 40.0% | |
| TTGGATGAAAGACCATGAAC+CGG | + | chr8_1:78234527-78234546 | Msa1216490:CDS | 40.0% | |
| ! | AACAAGTACTAACCGGTTCA+TGG | - | chr8_1:78234542-78234561 | None:intergenic | 40.0% |
| ACACTTGCCACATTTATAGG+TGG | + | chr8_1:78234827-78234846 | Msa1216490:intron | 40.0% | |
| AGCTTCACAACCCATAATTG+AGG | + | chr8_1:78234980-78234999 | Msa1216490:CDS | 40.0% | |
| ! | TATCAGTTTTCGCTCGTCTT+AGG | + | chr8_1:78235104-78235123 | Msa1216490:intron | 40.0% |
| GCTCGTCTTAGGCATAATAT+TGG | + | chr8_1:78235115-78235134 | Msa1216490:intron | 40.0% | |
| CTAAGACTGTGTGTGAACTT+GGG | + | chr8_1:78235207-78235226 | Msa1216490:CDS | 40.0% | |
| CACAACAGCTTGAATGAGTT+TGG | - | chr8_1:78235237-78235256 | None:intergenic | 40.0% | |
| ACTCATTCAAGCTGTTGTGT+TGG | + | chr8_1:78235238-78235257 | Msa1216490:CDS | 40.0% | |
| TCCATCATCTATCACAGTAG+AGG | + | chr8_1:78235265-78235284 | Msa1216490:CDS | 40.0% | |
| TCCTCTACTGTGATAGATGA+TGG | - | chr8_1:78235269-78235288 | None:intergenic | 40.0% | |
| ATCACAGTAGAGGACATCAA+TGG | + | chr8_1:78235275-78235294 | Msa1216490:CDS | 40.0% | |
| AGTAGAGGACATCAATGGTA+TGG | + | chr8_1:78235280-78235299 | Msa1216490:intron | 40.0% | |
| ATGTCAGGTGATAGACAAGA+AGG | - | chr8_1:78235402-78235421 | None:intergenic | 40.0% | |
| TTCTTGTCTATCACCTGACA+TGG | + | chr8_1:78235401-78235420 | Msa1216490:intron | 40.0% | |
| ! | CATTTTACAATCGTCCCTGT+TGG | - | chr8_1:78235560-78235579 | None:intergenic | 40.0% |
| CAACAGGGACGATTGTAAAA+TGG | + | chr8_1:78235558-78235577 | Msa1216490:intron | 40.0% | |
| TCAGCTCCAAGTATAGCAAT+TGG | - | chr8_1:78235804-78235823 | None:intergenic | 40.0% | |
| ! | TATAAAACAGGTGGTGGTGA+TGG | - | chr8_1:78236098-78236117 | None:intergenic | 40.0% |
| GGGAACAGTTATAAAACAGG+TGG | - | chr8_1:78236107-78236126 | None:intergenic | 40.0% | |
| !! | TAACTGTTCCCTCTAGCTTT+AGG | + | chr8_1:78236116-78236135 | Msa1216490:intron | 40.0% |
| !! | AACTGTTCCCTCTAGCTTTA+GGG | + | chr8_1:78236117-78236136 | Msa1216490:intron | 40.0% |
| AACTAGTCCCTAAAGCTAGA+GGG | - | chr8_1:78236127-78236146 | None:intergenic | 40.0% | |
| TAACTAGTCCCTAAAGCTAG+AGG | - | chr8_1:78236128-78236147 | None:intergenic | 40.0% | |
| CCAATCCAGCAAGATTTGAT+GGG | - | chr8_1:78236427-78236446 | None:intergenic | 40.0% | |
| ACCAATCCAGCAAGATTTGA+TGG | - | chr8_1:78236428-78236447 | None:intergenic | 40.0% | |
| ! | CTGAACTCTTTTAGTGGAGC+TGG | + | chr8_1:78233970-78233989 | Msa1216490:CDS | 45.0% |
| GGTCTTGATGCTTATCTCAC+TGG | + | chr8_1:78234012-78234031 | Msa1216490:CDS | 45.0% | |
| !! | AGAATGGCTTTGGTGGAAAG+AGG | - | chr8_1:78234042-78234061 | None:intergenic | 45.0% |
| GTGAAGGAATCTTGCAGACA+AGG | + | chr8_1:78234416-78234435 | Msa1216490:intron | 45.0% | |
| GAATCTTGCAGACAAGGTTG+CGG | + | chr8_1:78234422-78234441 | Msa1216490:CDS | 45.0% | |
| CAAACATCGTAGCGTGCATT+TGG | - | chr8_1:78234790-78234809 | None:intergenic | 45.0% | |
| ! | TTGGAGCTGCTGGTTATTGT+TGG | + | chr8_1:78235030-78235049 | Msa1216490:CDS | 45.0% |
| ! | TGGAGCTGCTGGTTATTGTT+GGG | + | chr8_1:78235031-78235050 | Msa1216490:CDS | 45.0% |
| GTGAGTGCCTTTCACTTGTT+TGG | + | chr8_1:78235057-78235076 | Msa1216490:intron | 45.0% | |
| GCTAAGACTGTGTGTGAACT+TGG | + | chr8_1:78235206-78235225 | Msa1216490:intron | 45.0% | |
| GTAGGTAAACACTCCATGTC+AGG | - | chr8_1:78235417-78235436 | None:intergenic | 45.0% | |
| TGATCCAATTACTCCTCCAG+AGG | + | chr8_1:78235827-78235846 | Msa1216490:CDS | 45.0% | |
| ! | ATGACCTCTGGAGGAGTAAT+TGG | - | chr8_1:78235834-78235853 | None:intergenic | 45.0% |
| TGAAGATCCAGAAGCTGTGA+AGG | + | chr8_1:78236389-78236408 | Msa1216490:CDS | 45.0% | |
| CCCATCAAATCTTGCTGGAT+TGG | + | chr8_1:78236424-78236443 | Msa1216490:CDS | 45.0% | |
| !! | TAAATTATATTATACAATTT+GGG | - | chr8_1:78235726-78235745 | None:intergenic | 5.0% |
| !! | TTAAATTATATTATACAATT+TGG | - | chr8_1:78235727-78235746 | None:intergenic | 5.0% |
| TGCGGCAGCTGGATATTATG+TGG | + | chr8_1:78234440-78234459 | Msa1216490:CDS | 50.0% | |
| GGCATGTGAATGCATGACAG+CGG | + | chr8_1:78234749-78234768 | Msa1216490:intron | 50.0% | |
| GTTTCTGCTATTGGAGCTGC+TGG | + | chr8_1:78235020-78235039 | Msa1216490:CDS | 50.0% | |
| ! | GGAGCTGCTGGTTATTGTTG+GGG | + | chr8_1:78235032-78235051 | Msa1216490:CDS | 50.0% |
| TAGACAAGAAGGCTGCAGCA+TGG | - | chr8_1:78235391-78235410 | None:intergenic | 50.0% | |
| TTCCTAATGTCTCGCATGGC+TGG | + | chr8_1:78236349-78236368 | Msa1216490:CDS | 50.0% | |
| TCTCGCATGGCTGGACTATA+AGG | + | chr8_1:78236358-78236377 | Msa1216490:CDS | 50.0% | |
| AGAGGCCCATCAAATCTTGC+TGG | + | chr8_1:78236419-78236438 | Msa1216490:CDS | 50.0% | |
| TGGACGAAGAGCTCATAGAG+TGG | + | chr8_1:78236478-78236497 | Msa1216490:three_prime_UTR | 50.0% | |
| ACGAAGAGCTCATAGAGTGG+AGG | + | chr8_1:78236481-78236500 | Msa1216490:three_prime_UTR | 50.0% | |
| GGATCGCCGTAGAAGTAGTC+AGG | - | chr8_1:78234471-78234490 | None:intergenic | 55.0% | |
| ! | GCTGCTGGTTATTGTTGGGG+TGG | + | chr8_1:78235035-78235054 | Msa1216490:CDS | 55.0% |
| GTCCAGCCATGCGAGACATT+AGG | - | chr8_1:78236354-78236373 | None:intergenic | 55.0% | |
| TCTGCAGCCTTCACAGCTTC+TGG | - | chr8_1:78236399-78236418 | None:intergenic | 55.0% | |
| AGCTGTGAAGGCTGCAGAAG+AGG | + | chr8_1:78236401-78236420 | Msa1216490:CDS | 55.0% | |
| GCAGACAAGGTTGCGGCAGC+TGG | + | chr8_1:78234429-78234448 | Msa1216490:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 78233901 | 78236627 | 78233901 | ID=Msa1216490;Name=Msa1216490 |
| chr8_1 | mRNA | 78233901 | 78236627 | 78233901 | ID=Msa1216490-mRNA-1;Parent=Msa1216490;Name=Msa1216490-mRNA-1;_AED=0.42;_eAED=0.42;_QI=33|1|1|1|1|1|7|160|239 |
| chr8_1 | exon | 78233901 | 78234081 | 78233901 | ID=Msa1216490-mRNA-1:exon:27076;Parent=Msa1216490-mRNA-1 |
| chr8_1 | exon | 78234206 | 78234227 | 78234206 | ID=Msa1216490-mRNA-1:exon:27077;Parent=Msa1216490-mRNA-1 |
| chr8_1 | exon | 78234422 | 78234548 | 78234422 | ID=Msa1216490-mRNA-1:exon:27078;Parent=Msa1216490-mRNA-1 |
| chr8_1 | exon | 78234966 | 78235056 | 78234966 | ID=Msa1216490-mRNA-1:exon:27079;Parent=Msa1216490-mRNA-1 |
| chr8_1 | exon | 78235207 | 78235296 | 78235207 | ID=Msa1216490-mRNA-1:exon:27080;Parent=Msa1216490-mRNA-1 |
| chr8_1 | exon | 78235790 | 78235890 | 78235790 | ID=Msa1216490-mRNA-1:exon:27081;Parent=Msa1216490-mRNA-1 |
| chr8_1 | exon | 78236327 | 78236627 | 78236327 | ID=Msa1216490-mRNA-1:exon:27082;Parent=Msa1216490-mRNA-1 |
| chr8_1 | five_prime_UTR | 78233901 | 78233933 | 78233901 | ID=Msa1216490-mRNA-1:five_prime_utr;Parent=Msa1216490-mRNA-1 |
| chr8_1 | CDS | 78233934 | 78234081 | 78233934 | ID=Msa1216490-mRNA-1:cds;Parent=Msa1216490-mRNA-1 |
| chr8_1 | CDS | 78234206 | 78234227 | 78234206 | ID=Msa1216490-mRNA-1:cds;Parent=Msa1216490-mRNA-1 |
| chr8_1 | CDS | 78234422 | 78234548 | 78234422 | ID=Msa1216490-mRNA-1:cds;Parent=Msa1216490-mRNA-1 |
| chr8_1 | CDS | 78234966 | 78235056 | 78234966 | ID=Msa1216490-mRNA-1:cds;Parent=Msa1216490-mRNA-1 |
| chr8_1 | CDS | 78235207 | 78235296 | 78235207 | ID=Msa1216490-mRNA-1:cds;Parent=Msa1216490-mRNA-1 |
| chr8_1 | CDS | 78235790 | 78235890 | 78235790 | ID=Msa1216490-mRNA-1:cds;Parent=Msa1216490-mRNA-1 |
| chr8_1 | CDS | 78236327 | 78236467 | 78236327 | ID=Msa1216490-mRNA-1:cds;Parent=Msa1216490-mRNA-1 |
| chr8_1 | three_prime_UTR | 78236468 | 78236627 | 78236468 | ID=Msa1216490-mRNA-1:three_prime_utr;Parent=Msa1216490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
