Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216460 | XP_013458177.1 | 99.120 | 341 | 2 | 1 | 1 | 340 | 1 | 341 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216460 | sp|P50651|RIR2A_ARATH | 78.299 | 341 | 73 | 1 | 1 | 340 | 1 | 341 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607510 | Msa1216460 | 0.800218 | 1.598086e-48 | -8.615850e-47 |
| Msa1216210 | Msa1216460 | 0.967694 | 1.245257e-127 | -8.615850e-47 |
| Msa0493920 | Msa1216460 | 0.806381 | 8.458414e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216460 | MtrunA17_Chr4g0065771 | 99.120 | 341 | 2 | 1 | 1 | 340 | 1 | 341 | 0.0 | 699 |
| Msa1216460 | MtrunA17_Chr7g0225401 | 76.923 | 325 | 74 | 1 | 17 | 340 | 6 | 330 | 0.0 | 533 |
| Msa1216460 | MtrunA17_Chr1g0171221 | 76.615 | 325 | 75 | 1 | 17 | 340 | 6 | 330 | 0.0 | 532 |
| Msa1216460 | MtrunA17_Chr8g0362581 | 76.852 | 324 | 71 | 1 | 17 | 340 | 6 | 325 | 0.0 | 531 |
| Msa1216460 | MtrunA17_Chr7g0225281 | 76.615 | 325 | 75 | 1 | 17 | 340 | 6 | 330 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216460 | AT3G23580.1 | 78.299 | 341 | 73 | 1 | 1 | 340 | 1 | 341 | 0.0 | 566 |
| Msa1216460 | AT3G27060.1 | 74.618 | 327 | 80 | 2 | 17 | 340 | 6 | 332 | 8.32e-180 | 501 |
Find 80 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAGCTGGCATTATTAATT+AGG | 0.099728 | 8_1:-78212690 | Msa1216460:three_prime_UTR |
| GAACCCATATTGTTTGTTTA+AGG | 0.129140 | 8_1:+78215926 | None:intergenic |
| TCAGCTTCTGTGCCATATTC+TGG | 0.174738 | 8_1:-78213798 | Msa1216460:intron |
| ACAGCTTCAAGTATTATTTA+TGG | 0.188592 | 8_1:-78212797 | Msa1216460:three_prime_UTR |
| TCTTCCTTAAACAAACAATA+TGG | 0.194392 | 8_1:-78215930 | Msa1216460:exon |
| AACAAACAATATGGGTTCTT+TGG | 0.201499 | 8_1:-78215921 | Msa1216460:exon |
| AGAAAGCCGAAGCCAGTTTC+TGG | 0.226082 | 8_1:-78215784 | Msa1216460:CDS |
| ATGAATTCGTAATGTCTTTA+TGG | 0.232413 | 8_1:-78212623 | Msa1216460:three_prime_UTR |
| ATAGAGCAACTTGGCGGTTT+TGG | 0.254783 | 8_1:+78212597 | None:intergenic |
| TGATAGGCTCGGGCATTCTA+TGG | 0.295173 | 8_1:-78214510 | Msa1216460:intron |
| TTGCCCTTTCAGGTTTCCTT+GGG | 0.297013 | 8_1:-78213315 | Msa1216460:intron |
| CTAGCTGGCATTATTAATTA+GGG | 0.308769 | 8_1:-78212689 | Msa1216460:three_prime_UTR |
| GTACGTACCGGTCCAGAAAC+TGG | 0.313508 | 8_1:+78215772 | None:intergenic |
| TTTGCCCTTTCAGGTTTCCT+TGG | 0.319161 | 8_1:-78213316 | Msa1216460:intron |
| GGGCATTGAGTTGGATTAAC+AGG | 0.324433 | 8_1:-78214267 | Msa1216460:intron |
| CAGCTTCAAGTATTATTTAT+GGG | 0.327155 | 8_1:-78212796 | Msa1216460:three_prime_UTR |
| AAAGTTGTTTGTACCGAATA+GGG | 0.329619 | 8_1:+78215819 | None:intergenic |
| TACATCTGATGGAATCGTTT+TGG | 0.341636 | 8_1:-78214943 | Msa1216460:CDS |
| TGTGTTTGTTTCATTAGTAT+TGG | 0.347617 | 8_1:+78215857 | None:intergenic |
| CAAAGTTGTTTGTACCGAAT+AGG | 0.357003 | 8_1:+78215818 | None:intergenic |
| GCCCTCCCTTGTGCATTGAT+TGG | 0.362088 | 8_1:-78213482 | Msa1216460:CDS |
| TGGGATGACGGTGATGTATT+CGG | 0.363042 | 8_1:-78212777 | Msa1216460:three_prime_UTR |
| ATTTGTTGCTGACAGGCTAT+TGG | 0.373326 | 8_1:-78213426 | Msa1216460:intron |
| CTTCCTTAAACAAACAATAT+GGG | 0.393126 | 8_1:-78215929 | Msa1216460:exon |
| TCATTTGCGGAGAGGCTTGT+TGG | 0.399819 | 8_1:-78213985 | Msa1216460:CDS |
| GCAATCGAGAATATTCATTC+TGG | 0.401015 | 8_1:-78214477 | Msa1216460:intron |
| CAAAGTTCTTCCCATCATCT+TGG | 0.402459 | 8_1:+78212864 | None:intergenic |
| CTATTCGGTACAAACAACTT+TGG | 0.417491 | 8_1:-78215817 | Msa1216460:CDS |
| TATTCGGTACAAACAACTTT+GGG | 0.419966 | 8_1:-78215816 | Msa1216460:CDS |
| ACGTGGAAAATCCCTTTGAT+TGG | 0.420885 | 8_1:-78213275 | Msa1216460:CDS |
| CTCCTATGATGTACAACATT+GGG | 0.427756 | 8_1:-78215021 | Msa1216460:CDS |
| AATATGGGTTCTTTGGAGAA+TGG | 0.450361 | 8_1:-78215914 | Msa1216460:CDS |
| CTACAGTTCCACTTCATTTG+CGG | 0.457367 | 8_1:-78213998 | Msa1216460:intron |
| AGCTTAGCCTACACATATAT+AGG | 0.470410 | 8_1:-78212718 | Msa1216460:three_prime_UTR |
| AAGCTGAATGGGCATTGAGT+TGG | 0.487477 | 8_1:-78214276 | Msa1216460:CDS |
| ACATAAAATTTGTTGCTGAC+AGG | 0.490701 | 8_1:-78213433 | Msa1216460:CDS |
| GGAAAATCCCTTTGATTGGA+TGG | 0.494213 | 8_1:-78213271 | Msa1216460:CDS |
| AATAAAGTCCATCCAATCAA+AGG | 0.508574 | 8_1:+78213263 | None:intergenic |
| GTTGGCTTTGCATGTGTCGA+AGG | 0.513994 | 8_1:-78213967 | Msa1216460:CDS |
| AAAGTCTTCCTTGTGTTGCA+AGG | 0.514479 | 8_1:-78214300 | Msa1216460:CDS |
| ATAGGAGAGATCGACCTCTT+CGG | 0.515856 | 8_1:+78215037 | None:intergenic |
| AGTTCTTCCCATCATCTTGG+AGG | 0.524128 | 8_1:+78212867 | None:intergenic |
| GTTCTGTTGTTCCATGACAT+TGG | 0.532994 | 8_1:-78212647 | Msa1216460:three_prime_UTR |
| ATAAAGTCCATCCAATCAAA+GGG | 0.536591 | 8_1:+78213264 | None:intergenic |
| CGATAGAAAATAGAGCAACT+TGG | 0.536985 | 8_1:+78212588 | None:intergenic |
| AAGTATTATTTATGGGATGA+CGG | 0.537106 | 8_1:-78212789 | Msa1216460:three_prime_UTR |
| TGTTGCAAGGAAAGCTGAAT+GGG | 0.539139 | 8_1:-78214287 | Msa1216460:CDS |
| ATGTCAAGCCTCCAAGATGA+TGG | 0.539662 | 8_1:-78212875 | Msa1216460:CDS |
| AAGCCTCTCCGCAAATGAAG+TGG | 0.544352 | 8_1:+78213990 | None:intergenic |
| TCTCCTATGATGTACAACAT+TGG | 0.547781 | 8_1:-78215022 | Msa1216460:CDS |
| GCCAATCAATGCACAAGGGA+GGG | 0.550023 | 8_1:+78213481 | None:intergenic |
| TGCCCAATGTTGTACATCAT+AGG | 0.550802 | 8_1:+78215019 | None:intergenic |
| GTGTTGCAAGGAAAGCTGAA+TGG | 0.570277 | 8_1:-78214288 | Msa1216460:CDS |
| ACGAATTCATGCCAATGTCA+TGG | 0.573811 | 8_1:+78212636 | None:intergenic |
| GTAATTACCTATATATGTGT+AGG | 0.574932 | 8_1:+78212711 | None:intergenic |
| GCCGAAGCCAGTTTCTGGAC+CGG | 0.575902 | 8_1:-78215779 | Msa1216460:intron |
| ACCGGTCCAGAAACTGGCTT+CGG | 0.579097 | 8_1:+78215778 | None:intergenic |
| ATATATAGGTAATTACTAGC+TGG | 0.579957 | 8_1:-78212704 | Msa1216460:three_prime_UTR |
| TAGAAAATAGAGCAACTTGG+CGG | 0.586093 | 8_1:+78212591 | None:intergenic |
| AGAGATGTATAGCTTGCTGT+TGG | 0.591810 | 8_1:-78214374 | Msa1216460:CDS |
| TGCCAATCAATGCACAAGGG+AGG | 0.592084 | 8_1:+78213480 | None:intergenic |
| TGCCCTTTCAGGTTTCCTTG+GGG | 0.594621 | 8_1:-78213314 | Msa1216460:intron |
| TTGGCTTTGCATGTGTCGAA+GGG | 0.601411 | 8_1:-78213966 | Msa1216460:CDS |
| TCAGCTTTCCTTGCAACACA+AGG | 0.601802 | 8_1:+78214292 | None:intergenic |
| GACATGATTGAGCAGAGGAA+AGG | 0.602153 | 8_1:-78212945 | Msa1216460:intron |
| TGTCAAGCCTCCAAGATGAT+GGG | 0.607267 | 8_1:-78212874 | Msa1216460:CDS |
| TTCATGCCAATCAATGCACA+AGG | 0.616311 | 8_1:+78213476 | None:intergenic |
| TATGAAGTGCTTCTCAGAGT+CGG | 0.621934 | 8_1:+78214989 | None:intergenic |
| AAGTTGGTTGACAGCCGAAG+AGG | 0.629150 | 8_1:-78215051 | Msa1216460:intron |
| AAGGGTGGGTGATTATCAGA+AGG | 0.633466 | 8_1:-78212906 | Msa1216460:CDS |
| GTGCTTCTCAGAGTCGGACA+AGG | 0.636420 | 8_1:+78214995 | None:intergenic |
| GTTCCACTTCATTTGCGGAG+AGG | 0.636747 | 8_1:-78213993 | Msa1216460:CDS |
| AAGACAGCTAGATTCCGAGC+GGG | 0.643942 | 8_1:-78213558 | Msa1216460:CDS |
| GAGCTAATCTCTAGAGACGA+GGG | 0.653908 | 8_1:-78213733 | Msa1216460:CDS |
| TCATTTGAGAATGTCAGACC+TGG | 0.661877 | 8_1:+78213754 | None:intergenic |
| GAATGACGTTCAAATTCCAG+AGG | 0.667522 | 8_1:-78214898 | Msa1216460:intron |
| TGAGCTAATCTCTAGAGACG+AGG | 0.689131 | 8_1:-78213734 | Msa1216460:CDS |
| TAAGACAGCTAGATTCCGAG+CGG | 0.728130 | 8_1:-78213559 | Msa1216460:CDS |
| TACTAATGAAACAAACACAG+AGG | 0.751367 | 8_1:-78215853 | Msa1216460:CDS |
| TCATGCCAATCAATGCACAA+GGG | 0.758595 | 8_1:+78213477 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATACAGTAAAAAATAA+TGG | + | chr8_1:78212820-78212839 | None:intergenic | 10.0% |
| !!! | ATTATTTTTTACTGTATTAT+TGG | - | chr8_1:78212819-78212838 | Msa1216460:exon | 10.0% |
| !! | AAAAAAAAAGTTAAGTAAAT+AGG | + | chr8_1:78214686-78214705 | None:intergenic | 10.0% |
| !! | TATAATAACATATAGAGAAA+GGG | + | chr8_1:78212884-78212903 | None:intergenic | 15.0% |
| !! | ATATAATAACATATAGAGAA+AGG | + | chr8_1:78212885-78212904 | None:intergenic | 15.0% |
| !! | TAAATAATTGTTTGGAAATT+TGG | + | chr8_1:78213113-78213132 | None:intergenic | 15.0% |
| !! | ATACACTAAAAACTATATAT+TGG | + | chr8_1:78213236-78213255 | None:intergenic | 15.0% |
| !! | ATATATTGTATTCTAATGAA+TGG | - | chr8_1:78213257-78213276 | Msa1216460:CDS | 15.0% |
| !!! | TAATAAATAACTTTTGAAGT+TGG | - | chr8_1:78213467-78213486 | Msa1216460:CDS | 15.0% |
| !!! | TTATGTTAATTCTTGTTTTA+AGG | - | chr8_1:78213821-78213840 | Msa1216460:intron | 15.0% |
| !!! | TTAATTTTCATAGTACTTTT+TGG | - | chr8_1:78213850-78213869 | Msa1216460:intron | 15.0% |
| !!! | TTACTAATACAAATTTTAAC+AGG | + | chr8_1:78214337-78214356 | None:intergenic | 15.0% |
| !! | AATTTGTATTAGTAAAAGTA+TGG | - | chr8_1:78214342-78214361 | Msa1216460:CDS | 15.0% |
| !! | TAAATAAATGAAGTTGTATA+AGG | - | chr8_1:78214889-78214908 | Msa1216460:intron | 15.0% |
| !!! | TAATGTTTTGATATTAGTTT+TGG | - | chr8_1:78214915-78214934 | Msa1216460:CDS | 15.0% |
| !!! | ATATTTTTTCTTGACAAGAA+TGG | - | chr8_1:78212920-78212939 | Msa1216460:CDS | 20.0% |
| !! | CTATCAATAAATATAGTCAA+TGG | + | chr8_1:78214010-78214029 | None:intergenic | 20.0% |
| !!! | CATTGACTATATTTATTGAT+AGG | - | chr8_1:78214008-78214027 | Msa1216460:intron | 20.0% |
| !! | CAAAAATAAAACCACAAATT+AGG | + | chr8_1:78214138-78214157 | None:intergenic | 20.0% |
| !! | AACTCTTGTAAAATAAACAA+CGG | + | chr8_1:78214649-78214668 | None:intergenic | 20.0% |
| !! | AACAGATATAGTAGAATAAA+TGG | + | chr8_1:78215329-78215348 | None:intergenic | 20.0% |
| !!! | CTTGAAAAAAATATTGACTT+AGG | - | chr8_1:78215357-78215376 | Msa1216460:intron | 20.0% |
| ! | TCTTCCTTAAACAAACAATA+TGG | - | chr8_1:78212604-78212623 | Msa1216460:three_prime_UTR | 25.0% |
| ! | CTTCCTTAAACAAACAATAT+GGG | - | chr8_1:78212605-78212624 | Msa1216460:three_prime_UTR | 25.0% |
| !!! | TCTTCTTCTCTTATTTTCTT+CGG | + | chr8_1:78212650-78212669 | None:intergenic | 25.0% |
| ! | TGTGTTTGTTTCATTAGTAT+TGG | + | chr8_1:78212680-78212699 | None:intergenic | 25.0% |
| ! | ACAAGAATGGAAATTAAACT+GGG | - | chr8_1:78212933-78212952 | Msa1216460:CDS | 25.0% |
| ! | TATTGTATTCTAATGAATGG+TGG | - | chr8_1:78213260-78213279 | Msa1216460:CDS | 25.0% |
| !! | TCAATTATAGTTTCTGAAAG+TGG | + | chr8_1:78213384-78213403 | None:intergenic | 25.0% |
| ! | TTAACATAAAGTAAAGCCTA+AGG | + | chr8_1:78213810-78213829 | None:intergenic | 25.0% |
| !!! | GTTAATTCTTGTTTTAAGGA+TGG | - | chr8_1:78213825-78213844 | Msa1216460:intron | 25.0% |
| !!! | TCTTTGGTTTTATTCATATG+TGG | - | chr8_1:78213958-78213977 | Msa1216460:CDS | 25.0% |
| ! | ACTATATTTATTGATAGGCT+CGG | - | chr8_1:78214013-78214032 | Msa1216460:intron | 25.0% |
| ! | ATAAAACCACAAATTAGGTA+GGG | + | chr8_1:78214133-78214152 | None:intergenic | 25.0% |
| ! | AATAAAACCACAAATTAGGT+AGG | + | chr8_1:78214134-78214153 | None:intergenic | 25.0% |
| !!! | TCAATTTTTGGTACATGATA+GGG | + | chr8_1:78214368-78214387 | None:intergenic | 25.0% |
| !!! | ATCAATTTTTGGTACATGAT+AGG | + | chr8_1:78214369-78214388 | None:intergenic | 25.0% |
| ! | ATCATGTACCAAAAATTGAT+TGG | - | chr8_1:78214369-78214388 | Msa1216460:CDS | 25.0% |
| !!! | CAAAAATTGATTGGTTTGAT+GGG | - | chr8_1:78214378-78214397 | Msa1216460:intron | 25.0% |
| !! | ATTTATCTTTTATGCCTTTC+TGG | + | chr8_1:78214436-78214455 | None:intergenic | 25.0% |
| ! | AAGGCATAAAAGATAAATCT+CGG | - | chr8_1:78214438-78214457 | Msa1216460:intron | 25.0% |
| !!! | TCTTTCCTTTTTTTCAATTG+CGG | - | chr8_1:78214706-78214725 | Msa1216460:intron | 25.0% |
| !!! | ATTAGTTTTGGATGATTCAA+TGG | - | chr8_1:78214927-78214946 | Msa1216460:CDS | 25.0% |
| ! | TTATAATTCCCATGTTATCA+AGG | + | chr8_1:78215160-78215179 | None:intergenic | 25.0% |
| !! | TTTCCACGTTGTAAATTTTT+AGG | + | chr8_1:78215248-78215267 | None:intergenic | 25.0% |
| ! | ACAGCTTCAAGTATTATTTA+TGG | - | chr8_1:78215737-78215756 | Msa1216460:intron | 25.0% |
| ! | CAGCTTCAAGTATTATTTAT+GGG | - | chr8_1:78215738-78215757 | Msa1216460:intron | 25.0% |
| ! | AAGTATTATTTATGGGATGA+CGG | - | chr8_1:78215745-78215764 | Msa1216460:intron | 25.0% |
| ! | GTAATTACCTATATATGTGT+AGG | + | chr8_1:78215826-78215845 | None:intergenic | 25.0% |
| ! | ATATATAGGTAATTACTAGC+TGG | - | chr8_1:78215830-78215849 | Msa1216460:CDS | 25.0% |
| ! | ATGAATTCGTAATGTCTTTA+TGG | - | chr8_1:78215911-78215930 | Msa1216460:CDS | 25.0% |
| GAACCCATATTGTTTGTTTA+AGG | + | chr8_1:78212611-78212630 | None:intergenic | 30.0% | |
| AACAAACAATATGGGTTCTT+TGG | - | chr8_1:78212613-78212632 | Msa1216460:three_prime_UTR | 30.0% | |
| TACTAATGAAACAAACACAG+AGG | - | chr8_1:78212681-78212700 | Msa1216460:three_prime_UTR | 30.0% | |
| AAAGTTGTTTGTACCGAATA+GGG | + | chr8_1:78212718-78212737 | None:intergenic | 30.0% | |
| TATTCGGTACAAACAACTTT+GGG | - | chr8_1:78212718-78212737 | Msa1216460:three_prime_UTR | 30.0% | |
| GACAAGAATGGAAATTAAAC+TGG | - | chr8_1:78212932-78212951 | Msa1216460:CDS | 30.0% | |
| TATTATGTGTCAAACTCATG+TGG | - | chr8_1:78212983-78213002 | Msa1216460:intron | 30.0% | |
| ! | ATAACAACTTGCAGTTTGTT+GGG | - | chr8_1:78213043-78213062 | Msa1216460:intron | 30.0% |
| TCAAATACCTTCAAAGAAAG+CGG | + | chr8_1:78213174-78213193 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTGTTGCCAAAAC+CGG | - | chr8_1:78213358-78213377 | Msa1216460:intron | 30.0% |
| ATCATCACATGAAAACAACA+GGG | + | chr8_1:78213408-78213427 | None:intergenic | 30.0% | |
| AATCATCACATGAAAACAAC+AGG | + | chr8_1:78213409-78213428 | None:intergenic | 30.0% | |
| ATAAGTGTAAAAAGACCATG+CGG | + | chr8_1:78213438-78213457 | None:intergenic | 30.0% | |
| AAAAGTTAAAACACTACCTC+TGG | + | chr8_1:78213655-78213674 | None:intergenic | 30.0% | |
| GAAACTAATCGGTAAATTGA+GGG | + | chr8_1:78213720-78213739 | None:intergenic | 30.0% | |
| TGAAACTAATCGGTAAATTG+AGG | + | chr8_1:78213721-78213740 | None:intergenic | 30.0% | |
| AAGTAGCATGTGAAACTAAT+CGG | + | chr8_1:78213731-78213750 | None:intergenic | 30.0% | |
| ATAAATTGAAGAACGAGCAT+TGG | - | chr8_1:78213768-78213787 | Msa1216460:CDS | 30.0% | |
| GAACAAACAATCAAAAGACA+AGG | + | chr8_1:78213912-78213931 | None:intergenic | 30.0% | |
| CAAAACAAAATCACAACTCT+AGG | + | chr8_1:78213934-78213953 | None:intergenic | 30.0% | |
| !!! | GATTTTGTTTTGCTTCTCTT+TGG | - | chr8_1:78213942-78213961 | Msa1216460:intron | 30.0% |
| AATGGTTAAAAAGTTAACCC+AGG | + | chr8_1:78213992-78214011 | None:intergenic | 30.0% | |
| CTATATTTATTGATAGGCTC+GGG | - | chr8_1:78214014-78214033 | Msa1216460:intron | 30.0% | |
| TAAAACCACAAATTAGGTAG+GGG | + | chr8_1:78214132-78214151 | None:intergenic | 30.0% | |
| ! | CCATCAAACCAATCAATTTT+TGG | + | chr8_1:78214380-78214399 | None:intergenic | 30.0% |
| !! | CCAAAAATTGATTGGTTTGA+TGG | - | chr8_1:78214377-78214396 | Msa1216460:intron | 30.0% |
| ! | TTAGCGCAGTTATCTTTTAA+AGG | - | chr8_1:78214470-78214489 | Msa1216460:intron | 30.0% |
| ! | TAGCGCAGTTATCTTTTAAA+GGG | - | chr8_1:78214471-78214490 | Msa1216460:intron | 30.0% |
| TAATAGCTTCTCATAATGCA+TGG | - | chr8_1:78214512-78214531 | Msa1216460:intron | 30.0% | |
| AATAGCTTCTCATAATGCAT+GGG | - | chr8_1:78214513-78214532 | Msa1216460:intron | 30.0% | |
| !! | TCTCTTTTTAAGCCAGAATA+TGG | + | chr8_1:78214751-78214770 | None:intergenic | 30.0% |
| !! | ATATTCTGGCTTAAAAAGAG+AGG | - | chr8_1:78214750-78214769 | Msa1216460:intron | 30.0% |
| ! | CAGCAACAAATTTTATGTAC+TGG | + | chr8_1:78215099-78215118 | None:intergenic | 30.0% |
| !! | ACATAAAATTTGTTGCTGAC+AGG | - | chr8_1:78215101-78215120 | Msa1216460:intron | 30.0% |
| ATAAAGTCCATCCAATCAAA+GGG | + | chr8_1:78215273-78215292 | None:intergenic | 30.0% | |
| AATAAAGTCCATCCAATCAA+AGG | + | chr8_1:78215274-78215293 | None:intergenic | 30.0% | |
| GTGTTTGTATCATGAAATAC+AGG | + | chr8_1:78215388-78215407 | None:intergenic | 30.0% | |
| TATCCAATCACATGATACAA+TGG | - | chr8_1:78215552-78215571 | Msa1216460:intron | 30.0% | |
| ACTAGCTGGCATTATTAATT+AGG | - | chr8_1:78215844-78215863 | Msa1216460:CDS | 30.0% | |
| CTAGCTGGCATTATTAATTA+GGG | - | chr8_1:78215845-78215864 | Msa1216460:CDS | 30.0% | |
| ! | AATATGGGTTCTTTGGAGAA+TGG | - | chr8_1:78212620-78212639 | Msa1216460:three_prime_UTR | 35.0% |
| !! | GGTTTTGTATGTTCCCTATT+CGG | - | chr8_1:78212702-78212721 | Msa1216460:three_prime_UTR | 35.0% |
| CAAAGTTGTTTGTACCGAAT+AGG | + | chr8_1:78212719-78212738 | None:intergenic | 35.0% | |
| CTATTCGGTACAAACAACTT+TGG | - | chr8_1:78212717-78212736 | Msa1216460:three_prime_UTR | 35.0% | |
| GATAACAACTTGCAGTTTGT+TGG | - | chr8_1:78213042-78213061 | Msa1216460:intron | 35.0% | |
| TGTTGGGAGACATTTCAATA+AGG | - | chr8_1:78213059-78213078 | Msa1216460:intron | 35.0% | |
| GTTGGGAGACATTTCAATAA+GGG | - | chr8_1:78213060-78213079 | Msa1216460:intron | 35.0% | |
| ! | TATTCTAATGAATGGTGGTG+TGG | - | chr8_1:78213265-78213284 | Msa1216460:CDS | 35.0% |
| AACGTTCGTCATAATCTCAT+CGG | + | chr8_1:78213312-78213331 | None:intergenic | 35.0% | |
| ! | TTATAGTTTCTGAAAGTGGC+CGG | + | chr8_1:78213380-78213399 | None:intergenic | 35.0% |
| TCTCCTATGATGTACAACAT+TGG | - | chr8_1:78213512-78213531 | Msa1216460:CDS | 35.0% | |
| CTCCTATGATGTACAACATT+GGG | - | chr8_1:78213513-78213532 | Msa1216460:CDS | 35.0% | |
| TCCATCAGATGTAGCAAAAA+AGG | + | chr8_1:78213584-78213603 | None:intergenic | 35.0% | |
| ! | TACATCTGATGGAATCGTTT+TGG | - | chr8_1:78213591-78213610 | Msa1216460:intron | 35.0% |
| !!! | TGGAATCGTTTTGGAGAATT+TGG | - | chr8_1:78213600-78213619 | Msa1216460:intron | 35.0% |
| AAGACAAGGTGCGAAAATAA+GGG | + | chr8_1:78213898-78213917 | None:intergenic | 35.0% | |
| AAAGACAAGGTGCGAAAATA+AGG | + | chr8_1:78213899-78213918 | None:intergenic | 35.0% | |
| GCAATCGAGAATATTCATTC+TGG | - | chr8_1:78214057-78214076 | Msa1216460:intron | 35.0% | |
| CTATGAATAAACTGCCAAGT+AGG | - | chr8_1:78214311-78214330 | Msa1216460:CDS | 35.0% | |
| !! | CAAATTTTAACAGGCCTACT+TGG | + | chr8_1:78214328-78214347 | None:intergenic | 35.0% |
| !! | AAAGATAAATCTCGGTGTTC+TGG | - | chr8_1:78214446-78214465 | Msa1216460:intron | 35.0% |
| ! | AAGGGATATTTTTCTCAGGA+AGG | - | chr8_1:78214586-78214605 | Msa1216460:intron | 35.0% |
| GCAAACCGCAATTGAAAAAA+AGG | + | chr8_1:78214714-78214733 | None:intergenic | 35.0% | |
| AAAAAGAGAGGATTAATGCC+AGG | - | chr8_1:78214762-78214781 | Msa1216460:intron | 35.0% | |
| ! | ATTTTGCTTGCATGCTATAC+AGG | - | chr8_1:78214835-78214854 | Msa1216460:intron | 35.0% |
| !! | TACAATATTTTGAACCCGCT+CGG | + | chr8_1:78214993-78215012 | None:intergenic | 35.0% |
| !! | TTCGTTTTGCCTTGATAACA+TGG | - | chr8_1:78215148-78215167 | Msa1216460:intron | 35.0% |
| !! | TCGTTTTGCCTTGATAACAT+GGG | - | chr8_1:78215149-78215168 | Msa1216460:intron | 35.0% |
| ATAAGTTCTTCTCCCAAGAT+TGG | - | chr8_1:78215176-78215195 | Msa1216460:intron | 35.0% | |
| GTGCCTAAAAATTTACAACG+TGG | - | chr8_1:78215242-78215261 | Msa1216460:intron | 35.0% | |
| AAGCCATTGTATCATGTGAT+TGG | + | chr8_1:78215558-78215577 | None:intergenic | 35.0% | |
| !!! | AACTTTTTTGAGAGAAGGGT+GGG | - | chr8_1:78215614-78215633 | Msa1216460:intron | 35.0% |
| !!! | CTTTGTTTTCAAGCTTGATG+AGG | - | chr8_1:78215688-78215707 | Msa1216460:intron | 35.0% |
| AGCTTAGCCTACACATATAT+AGG | - | chr8_1:78215816-78215835 | Msa1216460:CDS | 35.0% | |
| TAGAAAATAGAGCAACTTGG+CGG | + | chr8_1:78215946-78215965 | None:intergenic | 35.0% | |
| CGATAGAAAATAGAGCAACT+TGG | + | chr8_1:78215949-78215968 | None:intergenic | 35.0% | |
| AGAAGTAACTACGTACGTAC+CGG | + | chr8_1:78212777-78212796 | None:intergenic | 40.0% | |
| CAAACTCATGTGGCTTAGTT+TGG | - | chr8_1:78212993-78213012 | Msa1216460:intron | 40.0% | |
| TATTGCACCGCTTTCTTTGA+AGG | - | chr8_1:78213164-78213183 | Msa1216460:intron | 40.0% | |
| TGCCCAATGTTGTACATCAT+AGG | + | chr8_1:78213518-78213537 | None:intergenic | 40.0% | |
| ! | TATGAAGTGCTTCTCAGAGT+CGG | + | chr8_1:78213548-78213567 | None:intergenic | 40.0% |
| CAGATGTAGCAAAAAAGGCA+AGG | + | chr8_1:78213579-78213598 | None:intergenic | 40.0% | |
| !!! | GCCTTTTTTGCTACATCTGA+TGG | - | chr8_1:78213580-78213599 | Msa1216460:intron | 40.0% |
| !! | TTTTGGAGAATTTGGCTGCA+AGG | - | chr8_1:78213608-78213627 | Msa1216460:intron | 40.0% |
| GAATGACGTTCAAATTCCAG+AGG | - | chr8_1:78213636-78213655 | Msa1216460:intron | 40.0% | |
| AGTCTGATGTTGTACACCTT+AGG | - | chr8_1:78213791-78213810 | Msa1216460:CDS | 40.0% | |
| AGACAAGGTGCGAAAATAAG+GGG | + | chr8_1:78213897-78213916 | None:intergenic | 40.0% | |
| ATTGTGCTAAGGAAGAGAAG+AGG | + | chr8_1:78214103-78214122 | None:intergenic | 40.0% | |
| AGGGGACAAATATTGTGCTA+AGG | + | chr8_1:78214114-78214133 | None:intergenic | 40.0% | |
| TTTGTCCCCTACCTAATTTG+TGG | - | chr8_1:78214124-78214143 | Msa1216460:intron | 40.0% | |
| !! | AGAGATGTATAGCTTGCTGT+TGG | - | chr8_1:78214160-78214179 | Msa1216460:intron | 40.0% |
| AAAGTCTTCCTTGTGTTGCA+AGG | - | chr8_1:78214234-78214253 | Msa1216460:intron | 40.0% | |
| TGTTGCAAGGAAAGCTGAAT+GGG | - | chr8_1:78214247-78214266 | Msa1216460:intron | 40.0% | |
| CTACAGTTCCACTTCATTTG+CGG | - | chr8_1:78214536-78214555 | Msa1216460:intron | 40.0% | |
| ! | GTCGAAGGGATATTTTTCTC+AGG | - | chr8_1:78214582-78214601 | Msa1216460:intron | 40.0% |
| TCATTTGAGAATGTCAGACC+TGG | + | chr8_1:78214783-78214802 | None:intergenic | 40.0% | |
| TCATGCCAATCAATGCACAA+GGG | + | chr8_1:78215060-78215079 | None:intergenic | 40.0% | |
| TTCATGCCAATCAATGCACA+AGG | + | chr8_1:78215061-78215080 | None:intergenic | 40.0% | |
| ! | ATTTGTTGCTGACAGGCTAT+TGG | - | chr8_1:78215108-78215127 | Msa1216460:intron | 40.0% |
| AAAGGGCAAAAAGGAAAAGC+GGG | + | chr8_1:78215208-78215227 | None:intergenic | 40.0% | |
| GAAAGGGCAAAAAGGAAAAG+CGG | + | chr8_1:78215209-78215228 | None:intergenic | 40.0% | |
| ! | CTTTTCCTTTTTGCCCTTTC+AGG | - | chr8_1:78215209-78215228 | Msa1216460:intron | 40.0% |
| !! | GTAAATTTTTAGGCACCCCA+AGG | + | chr8_1:78215238-78215257 | None:intergenic | 40.0% |
| ACGTGGAAAATCCCTTTGAT+TGG | - | chr8_1:78215259-78215278 | Msa1216460:intron | 40.0% | |
| GGAAAATCCCTTTGATTGGA+TGG | - | chr8_1:78215263-78215282 | Msa1216460:intron | 40.0% | |
| !!! | AGGCCAACTTTTTTGAGAGA+AGG | - | chr8_1:78215609-78215628 | Msa1216460:intron | 40.0% |
| !!! | GGCCAACTTTTTTGAGAGAA+GGG | - | chr8_1:78215610-78215629 | Msa1216460:intron | 40.0% |
| CACCCTTCTCTCAAAAAAGT+TGG | + | chr8_1:78215615-78215634 | None:intergenic | 40.0% | |
| !!! | CAACTTTTTTGAGAGAAGGG+TGG | - | chr8_1:78215613-78215632 | Msa1216460:intron | 40.0% |
| CAAAGTTCTTCCCATCATCT+TGG | + | chr8_1:78215673-78215692 | None:intergenic | 40.0% | |
| GTTCTGTTGTTCCATGACAT+TGG | - | chr8_1:78215887-78215906 | Msa1216460:CDS | 40.0% | |
| ACGAATTCATGCCAATGTCA+TGG | + | chr8_1:78215901-78215920 | None:intergenic | 40.0% | |
| ! | ATGAATGGTGGTGTGGAAGA+TGG | - | chr8_1:78213272-78213291 | Msa1216460:CDS | 45.0% |
| !! | TTTCTGAAAGTGGCCGGTTT+TGG | + | chr8_1:78213374-78213393 | None:intergenic | 45.0% |
| GTGATGATTGATTGACCGCA+TGG | - | chr8_1:78213420-78213439 | Msa1216460:intron | 45.0% | |
| ATAGGAGAGATCGACCTCTT+CGG | + | chr8_1:78213500-78213519 | None:intergenic | 45.0% | |
| TCAGCTTTCCTTGCAACACA+AGG | + | chr8_1:78214245-78214264 | None:intergenic | 45.0% | |
| GTGTTGCAAGGAAAGCTGAA+TGG | - | chr8_1:78214246-78214265 | Msa1216460:intron | 45.0% | |
| !! | AAGCTGAATGGGCATTGAGT+TGG | - | chr8_1:78214258-78214277 | Msa1216460:intron | 45.0% |
| !! | GGGCATTGAGTTGGATTAAC+AGG | - | chr8_1:78214267-78214286 | Msa1216460:intron | 45.0% |
| !!! | CTGGTGTTGCCAGTGTATTT+TGG | + | chr8_1:78214417-78214436 | None:intergenic | 45.0% |
| ATACACTGGCAACACCAGAA+AGG | - | chr8_1:78214419-78214438 | Msa1216460:intron | 45.0% | |
| !! | TTGGCTTTGCATGTGTCGAA+GGG | - | chr8_1:78214568-78214587 | Msa1216460:intron | 45.0% |
| TCAGCTTCTGTGCCATATTC+TGG | - | chr8_1:78214736-78214755 | Msa1216460:intron | 45.0% | |
| ! | TGAGCTAATCTCTAGAGACG+AGG | - | chr8_1:78214800-78214819 | Msa1216460:intron | 45.0% |
| ! | GAGCTAATCTCTAGAGACGA+GGG | - | chr8_1:78214801-78214820 | Msa1216460:intron | 45.0% |
| GCATGCTATACAGGTAGTAC+TGG | - | chr8_1:78214844-78214863 | Msa1216460:intron | 45.0% | |
| CTGTCTTAGTAACAAGCTGC+AGG | + | chr8_1:78214963-78214982 | None:intergenic | 45.0% | |
| TAAGACAGCTAGATTCCGAG+CGG | - | chr8_1:78214975-78214994 | Msa1216460:CDS | 45.0% | |
| AGTTCTTCTCCCAAGATTGG+TGG | - | chr8_1:78215179-78215198 | Msa1216460:intron | 45.0% | |
| GGAAACCTGAAAGGGCAAAA+AGG | + | chr8_1:78215217-78215236 | None:intergenic | 45.0% | |
| !! | TTTGCCCTTTCAGGTTTCCT+TGG | - | chr8_1:78215218-78215237 | Msa1216460:intron | 45.0% |
| !! | TTGCCCTTTCAGGTTTCCTT+GGG | - | chr8_1:78215219-78215238 | Msa1216460:intron | 45.0% |
| TATGCGACATGATTGAGCAG+AGG | - | chr8_1:78215584-78215603 | Msa1216460:intron | 45.0% | |
| GACATGATTGAGCAGAGGAA+AGG | - | chr8_1:78215589-78215608 | Msa1216460:intron | 45.0% | |
| AAGGGTGGGTGATTATCAGA+AGG | - | chr8_1:78215628-78215647 | Msa1216460:intron | 45.0% | |
| ATGTCAAGCCTCCAAGATGA+TGG | - | chr8_1:78215659-78215678 | Msa1216460:intron | 45.0% | |
| TGTCAAGCCTCCAAGATGAT+GGG | - | chr8_1:78215660-78215679 | Msa1216460:intron | 45.0% | |
| AGTTCTTCCCATCATCTTGG+AGG | + | chr8_1:78215670-78215689 | None:intergenic | 45.0% | |
| ! | TGGGATGACGGTGATGTATT+CGG | - | chr8_1:78215757-78215776 | Msa1216460:intron | 45.0% |
| ! | ATAGAGCAACTTGGCGGTTT+TGG | + | chr8_1:78215940-78215959 | None:intergenic | 45.0% |
| !! | AAAATATTTAAATAATTGTT+TGG | + | chr8_1:78213121-78213140 | None:intergenic | 5.0% |
| AGAAAGCCGAAGCCAGTTTC+TGG | - | chr8_1:78212750-78212769 | Msa1216460:three_prime_UTR | 50.0% | |
| ! | AAGTTGGTTGACAGCCGAAG+AGG | - | chr8_1:78213483-78213502 | Msa1216460:CDS | 50.0% |
| TCATATGTGGCAGCACTTCC+TGG | - | chr8_1:78213971-78213990 | Msa1216460:CDS | 50.0% | |
| CATATGTGGCAGCACTTCCT+GGG | - | chr8_1:78213972-78213991 | Msa1216460:CDS | 50.0% | |
| TGATAGGCTCGGGCATTCTA+TGG | - | chr8_1:78214024-78214043 | Msa1216460:intron | 50.0% | |
| !!! | CAGTGTATTTTGGCCTGGCA+GGG | + | chr8_1:78214407-78214426 | None:intergenic | 50.0% |
| !!! | GTTGCCAGTGTATTTTGGCC+TGG | + | chr8_1:78214412-78214431 | None:intergenic | 50.0% |
| GTTCCACTTCATTTGCGGAG+AGG | - | chr8_1:78214541-78214560 | Msa1216460:intron | 50.0% | |
| AAGCCTCTCCGCAAATGAAG+TGG | + | chr8_1:78214547-78214566 | None:intergenic | 50.0% | |
| TCATTTGCGGAGAGGCTTGT+TGG | - | chr8_1:78214549-78214568 | Msa1216460:intron | 50.0% | |
| !! | GTTGGCTTTGCATGTGTCGA+AGG | - | chr8_1:78214567-78214586 | Msa1216460:intron | 50.0% |
| AAGACAGCTAGATTCCGAGC+GGG | - | chr8_1:78214976-78214995 | Msa1216460:CDS | 50.0% | |
| GCCAATCAATGCACAAGGGA+GGG | + | chr8_1:78215056-78215075 | None:intergenic | 50.0% | |
| TGCCAATCAATGCACAAGGG+AGG | + | chr8_1:78215057-78215076 | None:intergenic | 50.0% | |
| AGCGGGTAACCACCAATCTT+GGG | + | chr8_1:78215191-78215210 | None:intergenic | 50.0% | |
| AAGCGGGTAACCACCAATCT+TGG | + | chr8_1:78215192-78215211 | None:intergenic | 50.0% | |
| !! | TGCCCTTTCAGGTTTCCTTG+GGG | - | chr8_1:78215220-78215239 | Msa1216460:intron | 50.0% |
| CACCCCAAGGAAACCTGAAA+GGG | + | chr8_1:78215225-78215244 | None:intergenic | 50.0% | |
| ! | ACCGGTCCAGAAACTGGCTT+CGG | + | chr8_1:78212759-78212778 | None:intergenic | 55.0% |
| ! | GTACGTACCGGTCCAGAAAC+TGG | + | chr8_1:78212765-78212784 | None:intergenic | 55.0% |
| GTGCTTCTCAGAGTCGGACA+AGG | + | chr8_1:78213542-78213561 | None:intergenic | 55.0% | |
| !!! | TGTATTTTGGCCTGGCAGGG+TGG | + | chr8_1:78214404-78214423 | None:intergenic | 55.0% |
| !!! | CCAGTGTATTTTGGCCTGGC+AGG | + | chr8_1:78214408-78214427 | None:intergenic | 55.0% |
| CCTGCCAGGCCAAAATACAC+TGG | - | chr8_1:78214405-78214424 | Msa1216460:intron | 55.0% | |
| ! | GCCCTCCCTTGTGCATTGAT+TGG | - | chr8_1:78215052-78215071 | Msa1216460:intron | 55.0% |
| GCACCCCAAGGAAACCTGAA+AGG | + | chr8_1:78215226-78215245 | None:intergenic | 55.0% | |
| ! | GCCGAAGCCAGTTTCTGGAC+CGG | - | chr8_1:78212755-78212774 | Msa1216460:three_prime_UTR | 60.0% |
| ! | GTTTGATGGGCCACCCTGCC+AGG | - | chr8_1:78214391-78214410 | Msa1216460:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 78212565 | 78215991 | 78212565 | ID=Msa1216460;Name=Msa1216460 |
| chr8_1 | mRNA | 78212565 | 78215991 | 78212565 | ID=Msa1216460-mRNA-1;Parent=Msa1216460;Name=Msa1216460-mRNA-1;_AED=0.06;_eAED=0.06;_QI=58|1|1|1|1|1|9|273|340 |
| chr8_1 | exon | 78212565 | 78212952 | 78212565 | ID=Msa1216460-mRNA-1:exon:27104;Parent=Msa1216460-mRNA-1 |
| chr8_1 | exon | 78213255 | 78213325 | 78213255 | ID=Msa1216460-mRNA-1:exon:27103;Parent=Msa1216460-mRNA-1 |
| chr8_1 | exon | 78213427 | 78213589 | 78213427 | ID=Msa1216460-mRNA-1:exon:27102;Parent=Msa1216460-mRNA-1 |
| chr8_1 | exon | 78213700 | 78213816 | 78213700 | ID=Msa1216460-mRNA-1:exon:27101;Parent=Msa1216460-mRNA-1 |
| chr8_1 | exon | 78213949 | 78214014 | 78213949 | ID=Msa1216460-mRNA-1:exon:27100;Parent=Msa1216460-mRNA-1 |
| chr8_1 | exon | 78214268 | 78214394 | 78214268 | ID=Msa1216460-mRNA-1:exon:27099;Parent=Msa1216460-mRNA-1 |
| chr8_1 | exon | 78214478 | 78214526 | 78214478 | ID=Msa1216460-mRNA-1:exon:27098;Parent=Msa1216460-mRNA-1 |
| chr8_1 | exon | 78214899 | 78215059 | 78214899 | ID=Msa1216460-mRNA-1:exon:27097;Parent=Msa1216460-mRNA-1 |
| chr8_1 | exon | 78215780 | 78215991 | 78215780 | ID=Msa1216460-mRNA-1:exon:27096;Parent=Msa1216460-mRNA-1 |
| chr8_1 | five_prime_UTR | 78215934 | 78215991 | 78215934 | ID=Msa1216460-mRNA-1:five_prime_utr;Parent=Msa1216460-mRNA-1 |
| chr8_1 | CDS | 78215780 | 78215933 | 78215780 | ID=Msa1216460-mRNA-1:cds;Parent=Msa1216460-mRNA-1 |
| chr8_1 | CDS | 78214899 | 78215059 | 78214899 | ID=Msa1216460-mRNA-1:cds;Parent=Msa1216460-mRNA-1 |
| chr8_1 | CDS | 78214478 | 78214526 | 78214478 | ID=Msa1216460-mRNA-1:cds;Parent=Msa1216460-mRNA-1 |
| chr8_1 | CDS | 78214268 | 78214394 | 78214268 | ID=Msa1216460-mRNA-1:cds;Parent=Msa1216460-mRNA-1 |
| chr8_1 | CDS | 78213949 | 78214014 | 78213949 | ID=Msa1216460-mRNA-1:cds;Parent=Msa1216460-mRNA-1 |
| chr8_1 | CDS | 78213700 | 78213816 | 78213700 | ID=Msa1216460-mRNA-1:cds;Parent=Msa1216460-mRNA-1 |
| chr8_1 | CDS | 78213427 | 78213589 | 78213427 | ID=Msa1216460-mRNA-1:cds;Parent=Msa1216460-mRNA-1 |
| chr8_1 | CDS | 78213255 | 78213325 | 78213255 | ID=Msa1216460-mRNA-1:cds;Parent=Msa1216460-mRNA-1 |
| chr8_1 | CDS | 78212838 | 78212952 | 78212838 | ID=Msa1216460-mRNA-1:cds;Parent=Msa1216460-mRNA-1 |
| chr8_1 | three_prime_UTR | 78212565 | 78212837 | 78212565 | ID=Msa1216460-mRNA-1:three_prime_utr;Parent=Msa1216460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
