Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216210 | sp|P50651|RIR2A_ARATH | 78.299 | 341 | 73 | 1 | 1 | 340 | 1 | 341 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216210 | A0A072USZ2 | 99.413 | 341 | 1 | 1 | 1 | 340 | 1 | 341 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607510 | Msa1216210 | 0.811930 | 5.473172e-51 | -8.615850e-47 |
| Msa0232550 | Msa1216210 | 0.800356 | 1.497472e-48 | -8.615850e-47 |
| Msa1216210 | Msa1216460 | 0.967694 | 1.245257e-127 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216210 | MtrunA17_Chr4g0065771 | 99.413 | 341 | 1 | 1 | 1 | 340 | 1 | 341 | 0.0 | 701 |
| Msa1216210 | MtrunA17_Chr7g0225401 | 76.923 | 325 | 74 | 1 | 17 | 340 | 6 | 330 | 0.0 | 532 |
| Msa1216210 | MtrunA17_Chr1g0171221 | 76.615 | 325 | 75 | 1 | 17 | 340 | 6 | 330 | 0.0 | 531 |
| Msa1216210 | MtrunA17_Chr8g0362581 | 76.852 | 324 | 71 | 1 | 17 | 340 | 6 | 325 | 0.0 | 531 |
| Msa1216210 | MtrunA17_Chr7g0225281 | 76.615 | 325 | 75 | 1 | 17 | 340 | 6 | 330 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216210 | AT3G23580.1 | 78.299 | 341 | 73 | 1 | 1 | 340 | 1 | 341 | 0.0 | 565 |
| Msa1216210 | AT3G27060.1 | 74.618 | 327 | 80 | 2 | 17 | 340 | 6 | 332 | 1.35e-179 | 500 |
Find 80 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAGCTGGCATTATTAATT+AGG | 0.099728 | 8_1:-77850873 | Msa1216210:three_prime_UTR |
| GAACCCATATTGTTTGTTTA+AGG | 0.129140 | 8_1:+77854156 | None:intergenic |
| TCAGCTTCTGTGCCATATTC+TGG | 0.174738 | 8_1:-77851981 | Msa1216210:intron |
| ACAGCTTCAAGTATTATTTA+TGG | 0.188592 | 8_1:-77850980 | Msa1216210:three_prime_UTR |
| TCTTCCTTAAACAAACAATA+TGG | 0.194392 | 8_1:-77854160 | Msa1216210:exon |
| AACAAACAATATGGGTTCTT+TGG | 0.201499 | 8_1:-77854151 | Msa1216210:exon |
| AGAAAGCCGAAGCCAGTTTC+TGG | 0.226082 | 8_1:-77854014 | Msa1216210:CDS |
| ATGAATTCGTAATGTCTTTA+TGG | 0.232413 | 8_1:-77850806 | Msa1216210:three_prime_UTR |
| ATAGAGTAACTTGGCGGTTT+TGG | 0.252487 | 8_1:+77850780 | None:intergenic |
| TGATAGGCTCGGGCATTCTA+TGG | 0.295173 | 8_1:-77852689 | Msa1216210:intron |
| TTGCCCTTTCAGGTTTCCTT+GGG | 0.297013 | 8_1:-77851498 | Msa1216210:intron |
| CTAGCTGGCATTATTAATTA+GGG | 0.308769 | 8_1:-77850872 | Msa1216210:three_prime_UTR |
| GTACGTACCGGTCCAGAAAC+TGG | 0.313508 | 8_1:+77854002 | None:intergenic |
| TTTGCCCTTTCAGGTTTCCT+TGG | 0.319161 | 8_1:-77851499 | Msa1216210:intron |
| GGGCATTGAGTTGGATTAAC+AGG | 0.324433 | 8_1:-77852446 | Msa1216210:intron |
| CAGCTTCAAGTATTATTTAT+GGG | 0.327155 | 8_1:-77850979 | Msa1216210:three_prime_UTR |
| TACATCTGATGGAATCGTTT+TGG | 0.341636 | 8_1:-77853122 | Msa1216210:CDS |
| TGTGTTTGTTTCATTAGTAT+TGG | 0.347617 | 8_1:+77854087 | None:intergenic |
| AAAGTTGTTTGTAGCGAATA+GGG | 0.351905 | 8_1:+77854049 | None:intergenic |
| GCCCTCCCTTGTGCATTGAT+TGG | 0.362088 | 8_1:-77851665 | Msa1216210:CDS |
| TGGGATGACGGTGATGTATT+CGG | 0.363042 | 8_1:-77850960 | Msa1216210:three_prime_UTR |
| CAAAGTTGTTTGTAGCGAAT+AGG | 0.369374 | 8_1:+77854048 | None:intergenic |
| ATTTGTTGCTGACAGGCTAT+TGG | 0.373326 | 8_1:-77851609 | Msa1216210:intron |
| CTTCCTTAAACAAACAATAT+GGG | 0.393126 | 8_1:-77854159 | Msa1216210:exon |
| GCAATCGAGAATATTCATTC+TGG | 0.401015 | 8_1:-77852656 | Msa1216210:intron |
| CAAAGTTCTTCCCATCATCT+TGG | 0.402459 | 8_1:+77851047 | None:intergenic |
| TATTCGCTACAAACAACTTT+GGG | 0.404981 | 8_1:-77854046 | Msa1216210:CDS |
| TCATTTGCCGAGAGGCTTGT+TGG | 0.414224 | 8_1:-77852164 | Msa1216210:CDS |
| CTATTCGCTACAAACAACTT+TGG | 0.419868 | 8_1:-77854047 | Msa1216210:CDS |
| ACGTGGAAAATCCCTTTGAT+TGG | 0.420885 | 8_1:-77851458 | Msa1216210:CDS |
| CTCCTATGATGTACAACATT+GGG | 0.427756 | 8_1:-77853200 | Msa1216210:CDS |
| AATATGGGTTCTTTGGAGAA+TGG | 0.450361 | 8_1:-77854144 | Msa1216210:CDS |
| AGCTTAGCCTACACATATAT+AGG | 0.470410 | 8_1:-77850901 | Msa1216210:three_prime_UTR |
| CGATAGAAAATAGAGTAACT+TGG | 0.486651 | 8_1:+77850771 | None:intergenic |
| AAGCTGAATGGGCATTGAGT+TGG | 0.487477 | 8_1:-77852455 | Msa1216210:CDS |
| ACATAAAATTTGTTGCTGAC+AGG | 0.490701 | 8_1:-77851616 | Msa1216210:CDS |
| GGAAAATCCCTTTGATTGGA+TGG | 0.494213 | 8_1:-77851454 | Msa1216210:CDS |
| AATAAAGTCCATCCAATCAA+AGG | 0.508574 | 8_1:+77851446 | None:intergenic |
| AAAATCTTCCTTGTGTTGCA+AGG | 0.510828 | 8_1:-77852479 | Msa1216210:CDS |
| GTTGGCTTTGCATGTGTCGA+AGG | 0.513994 | 8_1:-77852146 | Msa1216210:CDS |
| ATAGGAGAGATCGACCTCTT+CGG | 0.515856 | 8_1:+77853216 | None:intergenic |
| AGTTCTTCCCATCATCTTGG+AGG | 0.524128 | 8_1:+77851050 | None:intergenic |
| GTTCTGTTGTTCCATGACAT+TGG | 0.532994 | 8_1:-77850830 | Msa1216210:three_prime_UTR |
| ATAAAGTCCATCCAATCAAA+GGG | 0.536591 | 8_1:+77851447 | None:intergenic |
| AAGTATTATTTATGGGATGA+CGG | 0.537106 | 8_1:-77850972 | Msa1216210:three_prime_UTR |
| TGTTGCAAGGAAAGCTGAAT+GGG | 0.539139 | 8_1:-77852466 | Msa1216210:CDS |
| ATGTCAAGCCTCCAAGATGA+TGG | 0.539662 | 8_1:-77851058 | Msa1216210:CDS |
| TCTCCTATGATGTACAACAT+TGG | 0.547781 | 8_1:-77853201 | Msa1216210:CDS |
| TGCAAAGCCAACAAGCCTCT+CGG | 0.547806 | 8_1:+77852157 | None:intergenic |
| GCCAATCAATGCACAAGGGA+GGG | 0.550023 | 8_1:+77851664 | None:intergenic |
| TGCCCAATGTTGTACATCAT+AGG | 0.550802 | 8_1:+77853198 | None:intergenic |
| AAGCCTCTCGGCAAATGAAG+TGG | 0.570049 | 8_1:+77852169 | None:intergenic |
| GTGTTGCAAGGAAAGCTGAA+TGG | 0.570277 | 8_1:-77852467 | Msa1216210:CDS |
| ACGAATTCATGCCAATGTCA+TGG | 0.573811 | 8_1:+77850819 | None:intergenic |
| GTAATTACCTATATATGTGT+AGG | 0.574932 | 8_1:+77850894 | None:intergenic |
| GCCGAAGCCAGTTTCTGGAC+CGG | 0.575902 | 8_1:-77854009 | Msa1216210:intron |
| ACCGGTCCAGAAACTGGCTT+CGG | 0.579097 | 8_1:+77854008 | None:intergenic |
| ATATATAGGTAATTACTAGC+TGG | 0.579957 | 8_1:-77850887 | Msa1216210:three_prime_UTR |
| AGAGATGTATAGCTTGCTGT+TGG | 0.591810 | 8_1:-77852553 | Msa1216210:CDS |
| TGCCAATCAATGCACAAGGG+AGG | 0.592084 | 8_1:+77851663 | None:intergenic |
| TGCCCTTTCAGGTTTCCTTG+GGG | 0.594621 | 8_1:-77851497 | Msa1216210:intron |
| GACATAATTGAGCAGAGGAA+AGG | 0.597568 | 8_1:-77851128 | Msa1216210:intron |
| TTGGCTTTGCATGTGTCGAA+GGG | 0.601411 | 8_1:-77852145 | Msa1216210:CDS |
| TCAGCTTTCCTTGCAACACA+AGG | 0.601802 | 8_1:+77852471 | None:intergenic |
| TAGAAAATAGAGTAACTTGG+CGG | 0.604639 | 8_1:+77850774 | None:intergenic |
| TGTCAAGCCTCCAAGATGAT+GGG | 0.607267 | 8_1:-77851057 | Msa1216210:CDS |
| TTCATGCCAATCAATGCACA+AGG | 0.616311 | 8_1:+77851659 | None:intergenic |
| TATGAAGTGCTTCTCAGAGT+CGG | 0.621934 | 8_1:+77853168 | None:intergenic |
| AAGTTGGTTGACAGCCGAAG+AGG | 0.629150 | 8_1:-77853230 | Msa1216210:intron |
| AAGGGTGGGTGATTATCAGA+AGG | 0.633466 | 8_1:-77851089 | Msa1216210:CDS |
| GTGCTTCTCAGAGTCGGACA+AGG | 0.636420 | 8_1:+77853174 | None:intergenic |
| AAGACAGCTAGATTCCGAGC+GGG | 0.643942 | 8_1:-77851741 | Msa1216210:CDS |
| GAGCTAATCTCTAGAGACGA+GGG | 0.653908 | 8_1:-77851916 | Msa1216210:CDS |
| TCATTTGAGAATGTCAGACC+TGG | 0.661877 | 8_1:+77851937 | None:intergenic |
| GTTCCACTTCATTTGCCGAG+AGG | 0.666406 | 8_1:-77852172 | Msa1216210:CDS |
| GAATGACGTTCAAATTCCAG+AGG | 0.667522 | 8_1:-77853077 | Msa1216210:intron |
| TGAGCTAATCTCTAGAGACG+AGG | 0.689131 | 8_1:-77851917 | Msa1216210:CDS |
| TAAGACAGCTAGATTCCGAG+CGG | 0.728130 | 8_1:-77851742 | Msa1216210:CDS |
| TACTAATGAAACAAACACAG+AGG | 0.751367 | 8_1:-77854083 | Msa1216210:CDS |
| TCATGCCAATCAATGCACAA+GGG | 0.758595 | 8_1:+77851660 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTAAAAACTATATAT+TGG | + | chr8_1:77851465-77851484 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTTAAGTAAAT+AGG | + | chr8_1:77852920-77852939 | None:intergenic | 10.0% |
| !! | AAATAGATTTCCAAAAATAA+TGG | + | chr8_1:77851005-77851024 | None:intergenic | 15.0% |
| !! | TATAATAACATATAGAGAAA+GGG | + | chr8_1:77851057-77851076 | None:intergenic | 15.0% |
| !! | ATATAATAACATATAGAGAA+AGG | + | chr8_1:77851058-77851077 | None:intergenic | 15.0% |
| !! | TAAATAATTGTTTGGAAATT+TGG | + | chr8_1:77851342-77851361 | None:intergenic | 15.0% |
| !! | ATATATTGTATTCTAATGAA+TGG | - | chr8_1:77851493-77851512 | Msa1216210:intron | 15.0% |
| !!! | TAATAAATAACTTTTGAAGT+TGG | - | chr8_1:77851703-77851722 | Msa1216210:CDS | 15.0% |
| !!! | TTATGTTAATTCTTGTTTTA+AGG | - | chr8_1:77852057-77852076 | Msa1216210:intron | 15.0% |
| !!! | TTACTAATACAAATTTTAAC+AGG | + | chr8_1:77852573-77852592 | None:intergenic | 15.0% |
| !! | AATTTGTATTAGTAAAAGTA+TGG | - | chr8_1:77852578-77852597 | Msa1216210:intron | 15.0% |
| !! | TAAATAAATGAAGTTGTATA+AGG | - | chr8_1:77853121-77853140 | Msa1216210:CDS | 15.0% |
| !!! | TAATGTTTTGATATTAGTTT+TGG | - | chr8_1:77853147-77853166 | Msa1216210:CDS | 15.0% |
| !! | ACAAGAATGAAAATTAAACT+GGG | - | chr8_1:77851106-77851125 | Msa1216210:CDS | 20.0% |
| !!! | TTAATTTTCATAGTACTCTT+TGG | - | chr8_1:77852086-77852105 | Msa1216210:intron | 20.0% |
| !! | CTATCAATAAATATAGTCAA+TGG | + | chr8_1:77852246-77852265 | None:intergenic | 20.0% |
| !!! | CATTGACTATATTTATTGAT+AGG | - | chr8_1:77852244-77852263 | Msa1216210:intron | 20.0% |
| !! | CAAAAATAAAACCACAAATT+AGG | + | chr8_1:77852374-77852393 | None:intergenic | 20.0% |
| !! | AACTCTTGTAAAATAAACAA+CGG | + | chr8_1:77852883-77852902 | None:intergenic | 20.0% |
| !!! | TTTTTCCTTTTTTTCAATTG+CGG | - | chr8_1:77852938-77852957 | Msa1216210:intron | 20.0% |
| !!! | CTTGAAAAAAATATTGACTT+AGG | - | chr8_1:77853589-77853608 | Msa1216210:intron | 20.0% |
| ! | TCTTCCTTAAACAAACAATA+TGG | - | chr8_1:77850789-77850808 | Msa1216210:three_prime_UTR | 25.0% |
| ! | CTTCCTTAAACAAACAATAT+GGG | - | chr8_1:77850790-77850809 | Msa1216210:three_prime_UTR | 25.0% |
| !!! | TCTTCTTCTCTTATTTTCTT+CGG | + | chr8_1:77850835-77850854 | None:intergenic | 25.0% |
| ! | TGTGTTTGTTTCATTAGTAT+TGG | + | chr8_1:77850865-77850884 | None:intergenic | 25.0% |
| !!! | CTCTGTTTTTCCATTATTTT+TGG | - | chr8_1:77850992-77851011 | Msa1216210:three_prime_UTR | 25.0% |
| ! | GACAAGAATGAAAATTAAAC+TGG | - | chr8_1:77851105-77851124 | Msa1216210:CDS | 25.0% |
| ! | TATTGTATTCTAATGAATGG+TGG | - | chr8_1:77851496-77851515 | Msa1216210:intron | 25.0% |
| !! | TCAATTATAGTTTCTGAAAG+TGG | + | chr8_1:77851620-77851639 | None:intergenic | 25.0% |
| ! | TTAACATAAAGTAAAGCCTA+AGG | + | chr8_1:77852046-77852065 | None:intergenic | 25.0% |
| !!! | GTTAATTCTTGTTTTAAGGA+TGG | - | chr8_1:77852061-77852080 | Msa1216210:intron | 25.0% |
| !!! | TCTTTGGTTTTATTCATATG+TGG | - | chr8_1:77852194-77852213 | Msa1216210:intron | 25.0% |
| ! | ACTATATTTATTGATAGGCT+CGG | - | chr8_1:77852249-77852268 | Msa1216210:intron | 25.0% |
| ! | ATAAAACCACAAATTAGGTA+GGG | + | chr8_1:77852369-77852388 | None:intergenic | 25.0% |
| ! | AATAAAACCACAAATTAGGT+AGG | + | chr8_1:77852370-77852389 | None:intergenic | 25.0% |
| !!! | TCAATTTTTGGTACATGATA+GGG | + | chr8_1:77852604-77852623 | None:intergenic | 25.0% |
| !!! | ATCAATTTTTGGTACATGAT+AGG | + | chr8_1:77852605-77852624 | None:intergenic | 25.0% |
| ! | ATCATGTACCAAAAATTGAT+TGG | - | chr8_1:77852605-77852624 | Msa1216210:intron | 25.0% |
| !!! | CAAAAATTGATTGGTTTGAT+GGG | - | chr8_1:77852614-77852633 | Msa1216210:intron | 25.0% |
| !! | ATTTATCTTTTATGCCTTTC+TGG | + | chr8_1:77852672-77852691 | None:intergenic | 25.0% |
| ! | AAGGCATAAAAGATAAATCT+CGG | - | chr8_1:77852674-77852693 | Msa1216210:CDS | 25.0% |
| !!! | ATTAGTTTTGGATGATTCAA+TGG | - | chr8_1:77853159-77853178 | Msa1216210:CDS | 25.0% |
| !! | TTTCCACGTTGTAAATTTTT+AGG | + | chr8_1:77853480-77853499 | None:intergenic | 25.0% |
| !! | AACAGATATAGTGGAATAAA+TGG | + | chr8_1:77853561-77853580 | None:intergenic | 25.0% |
| ! | GAATGATAAAACAGATATAG+TGG | + | chr8_1:77853570-77853589 | None:intergenic | 25.0% |
| ! | ACAGCTTCAAGTATTATTTA+TGG | - | chr8_1:77853969-77853988 | Msa1216210:intron | 25.0% |
| ! | CAGCTTCAAGTATTATTTAT+GGG | - | chr8_1:77853970-77853989 | Msa1216210:intron | 25.0% |
| ! | AAGTATTATTTATGGGATGA+CGG | - | chr8_1:77853977-77853996 | Msa1216210:intron | 25.0% |
| ! | GTAATTACCTATATATGTGT+AGG | + | chr8_1:77854058-77854077 | None:intergenic | 25.0% |
| ! | ATATATAGGTAATTACTAGC+TGG | - | chr8_1:77854062-77854081 | Msa1216210:CDS | 25.0% |
| ! | ATGAATTCGTAATGTCTTTA+TGG | - | chr8_1:77854143-77854162 | Msa1216210:CDS | 25.0% |
| GAACCCATATTGTTTGTTTA+AGG | + | chr8_1:77850796-77850815 | None:intergenic | 30.0% | |
| AACAAACAATATGGGTTCTT+TGG | - | chr8_1:77850798-77850817 | Msa1216210:three_prime_UTR | 30.0% | |
| TACTAATGAAACAAACACAG+AGG | - | chr8_1:77850866-77850885 | Msa1216210:three_prime_UTR | 30.0% | |
| AAAGTTGTTTGTAGCGAATA+GGG | + | chr8_1:77850903-77850922 | None:intergenic | 30.0% | |
| TATTCGCTACAAACAACTTT+GGG | - | chr8_1:77850903-77850922 | Msa1216210:three_prime_UTR | 30.0% | |
| TTGATGAACATTTATTCACG+AGG | - | chr8_1:77851139-77851158 | Msa1216210:intron | 30.0% | |
| TATTATGTGTCAAACTCATG+TGG | - | chr8_1:77851221-77851240 | Msa1216210:intron | 30.0% | |
| TCAAATACCTTCAAAGAAAG+CGG | + | chr8_1:77851403-77851422 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTGTTGCCAAAAC+CGG | - | chr8_1:77851594-77851613 | Msa1216210:intron | 30.0% |
| ATCATCACATGAAAACAACA+GGG | + | chr8_1:77851644-77851663 | None:intergenic | 30.0% | |
| AATCATCACATGAAAACAAC+AGG | + | chr8_1:77851645-77851664 | None:intergenic | 30.0% | |
| ATAAGTGTAAAAAGACCATG+CGG | + | chr8_1:77851674-77851693 | None:intergenic | 30.0% | |
| AAAAGTTAAAACACTACCTC+TGG | + | chr8_1:77851891-77851910 | None:intergenic | 30.0% | |
| GAAACTAATCGGTAAATTGA+GGG | + | chr8_1:77851956-77851975 | None:intergenic | 30.0% | |
| TGAAACTAATCGGTAAATTG+AGG | + | chr8_1:77851957-77851976 | None:intergenic | 30.0% | |
| AAGTAGCATGTGAAACTAAT+CGG | + | chr8_1:77851967-77851986 | None:intergenic | 30.0% | |
| ATAAATTGAAGAACGAGCAT+TGG | - | chr8_1:77852004-77852023 | Msa1216210:intron | 30.0% | |
| GAACAAACAATCAAAAGACA+AGG | + | chr8_1:77852148-77852167 | None:intergenic | 30.0% | |
| CAAAACAAAATCACAACTCT+AGG | + | chr8_1:77852170-77852189 | None:intergenic | 30.0% | |
| !!! | GATTTTGTTTTGCTTCTCTT+TGG | - | chr8_1:77852178-77852197 | Msa1216210:intron | 30.0% |
| AATGGTTAAAAAGTTAACCC+AGG | + | chr8_1:77852228-77852247 | None:intergenic | 30.0% | |
| CTATATTTATTGATAGGCTC+GGG | - | chr8_1:77852250-77852269 | Msa1216210:intron | 30.0% | |
| TAAAACCACAAATTAGGTAG+GGG | + | chr8_1:77852368-77852387 | None:intergenic | 30.0% | |
| ! | CCATCAAACCAATCAATTTT+TGG | + | chr8_1:77852616-77852635 | None:intergenic | 30.0% |
| !! | CCAAAAATTGATTGGTTTGA+TGG | - | chr8_1:77852613-77852632 | Msa1216210:intron | 30.0% |
| ! | TTAGCGCAGTTATCTTTTAA+AGG | - | chr8_1:77852706-77852725 | Msa1216210:intron | 30.0% |
| ! | TAGCGCAGTTATCTTTTAAA+GGG | - | chr8_1:77852707-77852726 | Msa1216210:intron | 30.0% |
| TAATAGCTTCTCATAATGCA+TGG | - | chr8_1:77852748-77852767 | Msa1216210:intron | 30.0% | |
| AATAGCTTCTCATAATGCAT+GGG | - | chr8_1:77852749-77852768 | Msa1216210:intron | 30.0% | |
| !! | TCTCTTTTTAAGCCAGAATA+TGG | + | chr8_1:77852983-77853002 | None:intergenic | 30.0% |
| !! | ATATTCTGGCTTAAAAAGAG+AGG | - | chr8_1:77852982-77853001 | Msa1216210:intron | 30.0% |
| ! | CAGCAACAAATTTTATGTAC+TGG | + | chr8_1:77853331-77853350 | None:intergenic | 30.0% |
| !! | ACATAAAATTTGTTGCTGAC+AGG | - | chr8_1:77853333-77853352 | Msa1216210:intron | 30.0% |
| TTATAATTCCCATGTCATCA+AGG | + | chr8_1:77853392-77853411 | None:intergenic | 30.0% | |
| ATAAAGTCCATCCAATCAAA+GGG | + | chr8_1:77853505-77853524 | None:intergenic | 30.0% | |
| AATAAAGTCCATCCAATCAA+AGG | + | chr8_1:77853506-77853525 | None:intergenic | 30.0% | |
| GTGTTTGTATCATGAAATAC+AGG | + | chr8_1:77853620-77853639 | None:intergenic | 30.0% | |
| AAGTCATTGTATCATGTGAT+TGG | + | chr8_1:77853790-77853809 | None:intergenic | 30.0% | |
| ACTAGCTGGCATTATTAATT+AGG | - | chr8_1:77854076-77854095 | Msa1216210:CDS | 30.0% | |
| CTAGCTGGCATTATTAATTA+GGG | - | chr8_1:77854077-77854096 | Msa1216210:CDS | 30.0% | |
| TAGAAAATAGAGTAACTTGG+CGG | + | chr8_1:77854178-77854197 | None:intergenic | 30.0% | |
| CGATAGAAAATAGAGTAACT+TGG | + | chr8_1:77854181-77854200 | None:intergenic | 30.0% | |
| ! | AATATGGGTTCTTTGGAGAA+TGG | - | chr8_1:77850805-77850824 | Msa1216210:three_prime_UTR | 35.0% |
| CAAAGTTGTTTGTAGCGAAT+AGG | + | chr8_1:77850904-77850923 | None:intergenic | 35.0% | |
| CTATTCGCTACAAACAACTT+TGG | - | chr8_1:77850902-77850921 | Msa1216210:three_prime_UTR | 35.0% | |
| ACATGATAACAACTTGCAGT+TGG | - | chr8_1:77851267-77851286 | Msa1216210:intron | 35.0% | |
| ATAACAACTTGCAGTTGGTT+GGG | - | chr8_1:77851272-77851291 | Msa1216210:intron | 35.0% | |
| GTTGGGAGACATTTCAATAA+GGG | - | chr8_1:77851289-77851308 | Msa1216210:intron | 35.0% | |
| ! | TATTCTAATGAATGGTGGTG+TGG | - | chr8_1:77851501-77851520 | Msa1216210:intron | 35.0% |
| AACGTTCGTCATAATCTCAT+CGG | + | chr8_1:77851548-77851567 | None:intergenic | 35.0% | |
| ! | TTATAGTTTCTGAAAGTGGC+CGG | + | chr8_1:77851616-77851635 | None:intergenic | 35.0% |
| TCTCCTATGATGTACAACAT+TGG | - | chr8_1:77851748-77851767 | Msa1216210:CDS | 35.0% | |
| CTCCTATGATGTACAACATT+GGG | - | chr8_1:77851749-77851768 | Msa1216210:CDS | 35.0% | |
| TCCATCAGATGTAGCAAAAA+AGG | + | chr8_1:77851820-77851839 | None:intergenic | 35.0% | |
| ! | TACATCTGATGGAATCGTTT+TGG | - | chr8_1:77851827-77851846 | Msa1216210:intron | 35.0% |
| !!! | TGGAATCGTTTTGGAGAATT+TGG | - | chr8_1:77851836-77851855 | Msa1216210:intron | 35.0% |
| AAGACAAGGTGCGAAAATAA+GGG | + | chr8_1:77852134-77852153 | None:intergenic | 35.0% | |
| AAAGACAAGGTGCGAAAATA+AGG | + | chr8_1:77852135-77852154 | None:intergenic | 35.0% | |
| GCAATCGAGAATATTCATTC+TGG | - | chr8_1:77852293-77852312 | Msa1216210:intron | 35.0% | |
| AAAATCTTCCTTGTGTTGCA+AGG | - | chr8_1:77852470-77852489 | Msa1216210:CDS | 35.0% | |
| CTATGAATAAACTGCCAAGT+AGG | - | chr8_1:77852547-77852566 | Msa1216210:CDS | 35.0% | |
| !! | CAAATTTTAACAGGCCTACT+TGG | + | chr8_1:77852564-77852583 | None:intergenic | 35.0% |
| !! | AAAGATAAATCTCGGTGTTC+TGG | - | chr8_1:77852682-77852701 | Msa1216210:CDS | 35.0% |
| ! | AAGGGATATTTTTCTCAGGA+AGG | - | chr8_1:77852822-77852841 | Msa1216210:intron | 35.0% |
| GCAAACCGCAATTGAAAAAA+AGG | + | chr8_1:77852946-77852965 | None:intergenic | 35.0% | |
| AAAAAGAGAGGATTAATGCC+AGG | - | chr8_1:77852994-77853013 | Msa1216210:intron | 35.0% | |
| ! | ATTTTGCTTGCATGCTATAC+AGG | - | chr8_1:77853067-77853086 | Msa1216210:intron | 35.0% |
| !! | TACAATATTTTGAACCCGCT+CGG | + | chr8_1:77853225-77853244 | None:intergenic | 35.0% |
| ATAAGTTCTTCTCCCAAGAT+TGG | - | chr8_1:77853408-77853427 | Msa1216210:intron | 35.0% | |
| GTGCCTAAAAATTTACAACG+TGG | - | chr8_1:77853474-77853493 | Msa1216210:intron | 35.0% | |
| !!! | AACTTTTTTGAGAGAAGGGT+GGG | - | chr8_1:77853846-77853865 | Msa1216210:intron | 35.0% |
| !!! | CTTTGTTTTCAAGCTTGATG+AGG | - | chr8_1:77853920-77853939 | Msa1216210:intron | 35.0% |
| AGCTTAGCCTACACATATAT+AGG | - | chr8_1:77854048-77854067 | Msa1216210:CDS | 35.0% | |
| AGAAGTAACTACGTACGTAC+CGG | + | chr8_1:77850962-77850981 | None:intergenic | 40.0% | |
| CAAACTCATGTGGCTTAGTT+TGG | - | chr8_1:77851231-77851250 | Msa1216210:intron | 40.0% | |
| GATAACAACTTGCAGTTGGT+TGG | - | chr8_1:77851271-77851290 | Msa1216210:intron | 40.0% | |
| GGTTGGGAGACATTTCAATA+AGG | - | chr8_1:77851288-77851307 | Msa1216210:intron | 40.0% | |
| TATTGCACCGCTTTCTTTGA+AGG | - | chr8_1:77851393-77851412 | Msa1216210:intron | 40.0% | |
| TGCCCAATGTTGTACATCAT+AGG | + | chr8_1:77851754-77851773 | None:intergenic | 40.0% | |
| ! | TATGAAGTGCTTCTCAGAGT+CGG | + | chr8_1:77851784-77851803 | None:intergenic | 40.0% |
| CAGATGTAGCAAAAAAGGCA+AGG | + | chr8_1:77851815-77851834 | None:intergenic | 40.0% | |
| !!! | GCCTTTTTTGCTACATCTGA+TGG | - | chr8_1:77851816-77851835 | Msa1216210:intron | 40.0% |
| !! | TTTTGGAGAATTTGGCTGCA+AGG | - | chr8_1:77851844-77851863 | Msa1216210:intron | 40.0% |
| GAATGACGTTCAAATTCCAG+AGG | - | chr8_1:77851872-77851891 | Msa1216210:intron | 40.0% | |
| AGTCTGATGTTGTACACCTT+AGG | - | chr8_1:77852027-77852046 | Msa1216210:intron | 40.0% | |
| AGACAAGGTGCGAAAATAAG+GGG | + | chr8_1:77852133-77852152 | None:intergenic | 40.0% | |
| ATTGTGCTAAGGAAGAGAAG+AGG | + | chr8_1:77852339-77852358 | None:intergenic | 40.0% | |
| AGGGGACAAATATTGTGCTA+AGG | + | chr8_1:77852350-77852369 | None:intergenic | 40.0% | |
| TTTGTCCCCTACCTAATTTG+TGG | - | chr8_1:77852360-77852379 | Msa1216210:intron | 40.0% | |
| !! | AGAGATGTATAGCTTGCTGT+TGG | - | chr8_1:77852396-77852415 | Msa1216210:intron | 40.0% |
| TGTTGCAAGGAAAGCTGAAT+GGG | - | chr8_1:77852483-77852502 | Msa1216210:CDS | 40.0% | |
| ! | GTCGAAGGGATATTTTTCTC+AGG | - | chr8_1:77852818-77852837 | Msa1216210:intron | 40.0% |
| TCATTTGAGAATGTCAGACC+TGG | + | chr8_1:77853015-77853034 | None:intergenic | 40.0% | |
| TCATGCCAATCAATGCACAA+GGG | + | chr8_1:77853292-77853311 | None:intergenic | 40.0% | |
| TTCATGCCAATCAATGCACA+AGG | + | chr8_1:77853293-77853312 | None:intergenic | 40.0% | |
| ! | ATTTGTTGCTGACAGGCTAT+TGG | - | chr8_1:77853340-77853359 | Msa1216210:intron | 40.0% |
| !! | TTCGTTTTGCCTTGATGACA+TGG | - | chr8_1:77853380-77853399 | Msa1216210:intron | 40.0% |
| !! | TCGTTTTGCCTTGATGACAT+GGG | - | chr8_1:77853381-77853400 | Msa1216210:intron | 40.0% |
| AAAGGGCAAAAAGGAAAAGC+GGG | + | chr8_1:77853440-77853459 | None:intergenic | 40.0% | |
| GAAAGGGCAAAAAGGAAAAG+CGG | + | chr8_1:77853441-77853460 | None:intergenic | 40.0% | |
| ! | CTTTTCCTTTTTGCCCTTTC+AGG | - | chr8_1:77853441-77853460 | Msa1216210:intron | 40.0% |
| !! | GTAAATTTTTAGGCACCCCA+AGG | + | chr8_1:77853470-77853489 | None:intergenic | 40.0% |
| ACGTGGAAAATCCCTTTGAT+TGG | - | chr8_1:77853491-77853510 | Msa1216210:intron | 40.0% | |
| GGAAAATCCCTTTGATTGGA+TGG | - | chr8_1:77853495-77853514 | Msa1216210:intron | 40.0% | |
| TATGCGACATAATTGAGCAG+AGG | - | chr8_1:77853816-77853835 | Msa1216210:intron | 40.0% | |
| GACATAATTGAGCAGAGGAA+AGG | - | chr8_1:77853821-77853840 | Msa1216210:intron | 40.0% | |
| !!! | AGGCCAACTTTTTTGAGAGA+AGG | - | chr8_1:77853841-77853860 | Msa1216210:intron | 40.0% |
| !!! | GGCCAACTTTTTTGAGAGAA+GGG | - | chr8_1:77853842-77853861 | Msa1216210:intron | 40.0% |
| CACCCTTCTCTCAAAAAAGT+TGG | + | chr8_1:77853847-77853866 | None:intergenic | 40.0% | |
| !!! | CAACTTTTTTGAGAGAAGGG+TGG | - | chr8_1:77853845-77853864 | Msa1216210:intron | 40.0% |
| CAAAGTTCTTCCCATCATCT+TGG | + | chr8_1:77853905-77853924 | None:intergenic | 40.0% | |
| GTTCTGTTGTTCCATGACAT+TGG | - | chr8_1:77854119-77854138 | Msa1216210:CDS | 40.0% | |
| ACGAATTCATGCCAATGTCA+TGG | + | chr8_1:77854133-77854152 | None:intergenic | 40.0% | |
| ! | ATAGAGTAACTTGGCGGTTT+TGG | + | chr8_1:77854172-77854191 | None:intergenic | 40.0% |
| ! | ATGAATGGTGGTGTGGAAGA+TGG | - | chr8_1:77851508-77851527 | Msa1216210:intron | 45.0% |
| !! | TTTCTGAAAGTGGCCGGTTT+TGG | + | chr8_1:77851610-77851629 | None:intergenic | 45.0% |
| GTGATGATTGATTGACCGCA+TGG | - | chr8_1:77851656-77851675 | Msa1216210:CDS | 45.0% | |
| ATAGGAGAGATCGACCTCTT+CGG | + | chr8_1:77851736-77851755 | None:intergenic | 45.0% | |
| TCAGCTTTCCTTGCAACACA+AGG | + | chr8_1:77852481-77852500 | None:intergenic | 45.0% | |
| GTGTTGCAAGGAAAGCTGAA+TGG | - | chr8_1:77852482-77852501 | Msa1216210:CDS | 45.0% | |
| !! | AAGCTGAATGGGCATTGAGT+TGG | - | chr8_1:77852494-77852513 | Msa1216210:CDS | 45.0% |
| !! | GGGCATTGAGTTGGATTAAC+AGG | - | chr8_1:77852503-77852522 | Msa1216210:CDS | 45.0% |
| !!! | CTGGTGTTGCCAGTGTATTT+TGG | + | chr8_1:77852653-77852672 | None:intergenic | 45.0% |
| ATACACTGGCAACACCAGAA+AGG | - | chr8_1:77852655-77852674 | Msa1216210:intron | 45.0% | |
| !! | TTGGCTTTGCATGTGTCGAA+GGG | - | chr8_1:77852804-77852823 | Msa1216210:intron | 45.0% |
| TCAGCTTCTGTGCCATATTC+TGG | - | chr8_1:77852968-77852987 | Msa1216210:intron | 45.0% | |
| ! | TGAGCTAATCTCTAGAGACG+AGG | - | chr8_1:77853032-77853051 | Msa1216210:intron | 45.0% |
| ! | GAGCTAATCTCTAGAGACGA+GGG | - | chr8_1:77853033-77853052 | Msa1216210:intron | 45.0% |
| GCATGCTATACAGGTAGTAC+TGG | - | chr8_1:77853076-77853095 | Msa1216210:intron | 45.0% | |
| CTGTCTTAGTAACAAGCTGC+AGG | + | chr8_1:77853195-77853214 | None:intergenic | 45.0% | |
| TAAGACAGCTAGATTCCGAG+CGG | - | chr8_1:77853207-77853226 | Msa1216210:CDS | 45.0% | |
| AGTTCTTCTCCCAAGATTGG+TGG | - | chr8_1:77853411-77853430 | Msa1216210:intron | 45.0% | |
| GGAAACCTGAAAGGGCAAAA+AGG | + | chr8_1:77853449-77853468 | None:intergenic | 45.0% | |
| !! | TTTGCCCTTTCAGGTTTCCT+TGG | - | chr8_1:77853450-77853469 | Msa1216210:intron | 45.0% |
| !! | TTGCCCTTTCAGGTTTCCTT+GGG | - | chr8_1:77853451-77853470 | Msa1216210:intron | 45.0% |
| AAGGGTGGGTGATTATCAGA+AGG | - | chr8_1:77853860-77853879 | Msa1216210:intron | 45.0% | |
| ATGTCAAGCCTCCAAGATGA+TGG | - | chr8_1:77853891-77853910 | Msa1216210:intron | 45.0% | |
| TGTCAAGCCTCCAAGATGAT+GGG | - | chr8_1:77853892-77853911 | Msa1216210:intron | 45.0% | |
| AGTTCTTCCCATCATCTTGG+AGG | + | chr8_1:77853902-77853921 | None:intergenic | 45.0% | |
| ! | TGGGATGACGGTGATGTATT+CGG | - | chr8_1:77853989-77854008 | Msa1216210:intron | 45.0% |
| !! | AAAATATTTAAATAATTGTT+TGG | + | chr8_1:77851350-77851369 | None:intergenic | 5.0% |
| AGAAAGCCGAAGCCAGTTTC+TGG | - | chr8_1:77850935-77850954 | Msa1216210:three_prime_UTR | 50.0% | |
| ! | AAGTTGGTTGACAGCCGAAG+AGG | - | chr8_1:77851719-77851738 | Msa1216210:CDS | 50.0% |
| TCATATGTGGCAGCACTTCC+TGG | - | chr8_1:77852207-77852226 | Msa1216210:intron | 50.0% | |
| CATATGTGGCAGCACTTCCT+GGG | - | chr8_1:77852208-77852227 | Msa1216210:intron | 50.0% | |
| TGATAGGCTCGGGCATTCTA+TGG | - | chr8_1:77852260-77852279 | Msa1216210:intron | 50.0% | |
| !!! | CAGTGTATTTTGGCCTGGCA+GGG | + | chr8_1:77852643-77852662 | None:intergenic | 50.0% |
| !!! | GTTGCCAGTGTATTTTGGCC+TGG | + | chr8_1:77852648-77852667 | None:intergenic | 50.0% |
| GTTCCACTTCATTTGCCGAG+AGG | - | chr8_1:77852777-77852796 | Msa1216210:intron | 50.0% | |
| AAGCCTCTCGGCAAATGAAG+TGG | + | chr8_1:77852783-77852802 | None:intergenic | 50.0% | |
| TCATTTGCCGAGAGGCTTGT+TGG | - | chr8_1:77852785-77852804 | Msa1216210:intron | 50.0% | |
| TGCAAAGCCAACAAGCCTCT+CGG | + | chr8_1:77852795-77852814 | None:intergenic | 50.0% | |
| !! | GTTGGCTTTGCATGTGTCGA+AGG | - | chr8_1:77852803-77852822 | Msa1216210:intron | 50.0% |
| AAGACAGCTAGATTCCGAGC+GGG | - | chr8_1:77853208-77853227 | Msa1216210:CDS | 50.0% | |
| GCCAATCAATGCACAAGGGA+GGG | + | chr8_1:77853288-77853307 | None:intergenic | 50.0% | |
| TGCCAATCAATGCACAAGGG+AGG | + | chr8_1:77853289-77853308 | None:intergenic | 50.0% | |
| AGCGGGTAACCACCAATCTT+GGG | + | chr8_1:77853423-77853442 | None:intergenic | 50.0% | |
| AAGCGGGTAACCACCAATCT+TGG | + | chr8_1:77853424-77853443 | None:intergenic | 50.0% | |
| !! | TGCCCTTTCAGGTTTCCTTG+GGG | - | chr8_1:77853452-77853471 | Msa1216210:intron | 50.0% |
| CACCCCAAGGAAACCTGAAA+GGG | + | chr8_1:77853457-77853476 | None:intergenic | 50.0% | |
| ! | ACCGGTCCAGAAACTGGCTT+CGG | + | chr8_1:77850944-77850963 | None:intergenic | 55.0% |
| ! | GTACGTACCGGTCCAGAAAC+TGG | + | chr8_1:77850950-77850969 | None:intergenic | 55.0% |
| GTGCTTCTCAGAGTCGGACA+AGG | + | chr8_1:77851778-77851797 | None:intergenic | 55.0% | |
| !!! | TGTATTTTGGCCTGGCAGGG+TGG | + | chr8_1:77852640-77852659 | None:intergenic | 55.0% |
| !!! | CCAGTGTATTTTGGCCTGGC+AGG | + | chr8_1:77852644-77852663 | None:intergenic | 55.0% |
| CCTGCCAGGCCAAAATACAC+TGG | - | chr8_1:77852641-77852660 | Msa1216210:intron | 55.0% | |
| ! | GCCCTCCCTTGTGCATTGAT+TGG | - | chr8_1:77853284-77853303 | Msa1216210:intron | 55.0% |
| GCACCCCAAGGAAACCTGAA+AGG | + | chr8_1:77853458-77853477 | None:intergenic | 55.0% | |
| ! | GCCGAAGCCAGTTTCTGGAC+CGG | - | chr8_1:77850940-77850959 | Msa1216210:three_prime_UTR | 60.0% |
| ! | GTTTGATGGGCCACCCTGCC+AGG | - | chr8_1:77852627-77852646 | Msa1216210:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 77850747 | 77854224 | 77850747 | ID=Msa1216210;Name=Msa1216210 |
| chr8_1 | mRNA | 77850747 | 77854224 | 77850747 | ID=Msa1216210-mRNA-1;Parent=Msa1216210;Name=Msa1216210-mRNA-1;_AED=0.02;_eAED=0.02;_QI=61|1|1|1|1|1|9|274|340 |
| chr8_1 | exon | 77850747 | 77851135 | 77850747 | ID=Msa1216210-mRNA-1:exon:26907;Parent=Msa1216210-mRNA-1 |
| chr8_1 | exon | 77851438 | 77851508 | 77851438 | ID=Msa1216210-mRNA-1:exon:26906;Parent=Msa1216210-mRNA-1 |
| chr8_1 | exon | 77851610 | 77851772 | 77851610 | ID=Msa1216210-mRNA-1:exon:26905;Parent=Msa1216210-mRNA-1 |
| chr8_1 | exon | 77851883 | 77851999 | 77851883 | ID=Msa1216210-mRNA-1:exon:26904;Parent=Msa1216210-mRNA-1 |
| chr8_1 | exon | 77852128 | 77852193 | 77852128 | ID=Msa1216210-mRNA-1:exon:26903;Parent=Msa1216210-mRNA-1 |
| chr8_1 | exon | 77852447 | 77852573 | 77852447 | ID=Msa1216210-mRNA-1:exon:26902;Parent=Msa1216210-mRNA-1 |
| chr8_1 | exon | 77852657 | 77852705 | 77852657 | ID=Msa1216210-mRNA-1:exon:26901;Parent=Msa1216210-mRNA-1 |
| chr8_1 | exon | 77853078 | 77853238 | 77853078 | ID=Msa1216210-mRNA-1:exon:26900;Parent=Msa1216210-mRNA-1 |
| chr8_1 | exon | 77854010 | 77854224 | 77854010 | ID=Msa1216210-mRNA-1:exon:26899;Parent=Msa1216210-mRNA-1 |
| chr8_1 | five_prime_UTR | 77854164 | 77854224 | 77854164 | ID=Msa1216210-mRNA-1:five_prime_utr;Parent=Msa1216210-mRNA-1 |
| chr8_1 | CDS | 77854010 | 77854163 | 77854010 | ID=Msa1216210-mRNA-1:cds;Parent=Msa1216210-mRNA-1 |
| chr8_1 | CDS | 77853078 | 77853238 | 77853078 | ID=Msa1216210-mRNA-1:cds;Parent=Msa1216210-mRNA-1 |
| chr8_1 | CDS | 77852657 | 77852705 | 77852657 | ID=Msa1216210-mRNA-1:cds;Parent=Msa1216210-mRNA-1 |
| chr8_1 | CDS | 77852447 | 77852573 | 77852447 | ID=Msa1216210-mRNA-1:cds;Parent=Msa1216210-mRNA-1 |
| chr8_1 | CDS | 77852128 | 77852193 | 77852128 | ID=Msa1216210-mRNA-1:cds;Parent=Msa1216210-mRNA-1 |
| chr8_1 | CDS | 77851883 | 77851999 | 77851883 | ID=Msa1216210-mRNA-1:cds;Parent=Msa1216210-mRNA-1 |
| chr8_1 | CDS | 77851610 | 77851772 | 77851610 | ID=Msa1216210-mRNA-1:cds;Parent=Msa1216210-mRNA-1 |
| chr8_1 | CDS | 77851438 | 77851508 | 77851438 | ID=Msa1216210-mRNA-1:cds;Parent=Msa1216210-mRNA-1 |
| chr8_1 | CDS | 77851021 | 77851135 | 77851021 | ID=Msa1216210-mRNA-1:cds;Parent=Msa1216210-mRNA-1 |
| chr8_1 | three_prime_UTR | 77850747 | 77851020 | 77850747 | ID=Msa1216210-mRNA-1:three_prime_utr;Parent=Msa1216210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
