AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1217640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217640 MtrunA17_Chr4g0067321 94.048 252 13 2 1 250 1 252 1.11e-173 486
Msa1217640 MtrunA17_Chr4g0067321 95.270 148 7 0 284 431 55 202 1.65e-99 297
Msa1217640 MtrunA17_Chr5g0413211 78.000 250 51 3 1 248 1 248 1.14e-136 392
Msa1217640 MtrunA17_Chr5g0413211 77.852 149 30 2 284 431 55 201 3.22e-78 243
Msa1217640 MtrunA17_Chr3g0116531 68.800 250 70 3 1 248 1 244 1.15e-115 338
Msa1217640 MtrunA17_Chr3g0116531 73.649 148 39 0 284 431 49 196 7.00e-74 231
Msa1217640 MtrunA17_Chr4g0069031 90.566 106 10 0 77 182 6 111 3.17e-64 204
Msa1217640 MtrunA17_Chr4g0069031 88.679 106 12 0 306 411 6 111 1.56e-62 200
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217640 AT1G74875.1 32.317 164 102 4 30 188 17 176 4.76e-20 89.4
Msa1217640 AT1G74875.1 34.783 138 81 4 285 417 43 176 1.01e-18 85.5
Msa1217640 AT1G67623.1 28.926 242 155 8 15 245 13 248 1.92e-19 88.6
Msa1217640 AT1G67623.1 30.137 146 91 4 285 425 55 194 5.31e-12 66.6
Msa1217640 AT2G35280.1 33.333 138 89 2 18 155 4 138 2.34e-13 68.2

Find 93 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATAGAGTAAACATATT+TGG 0.220285 8_1:-80093368 None:intergenic
AAGCATAGAGTAAACATATT+TGG 0.220285 8_1:-80095920 None:intergenic
AACCGGTCCGGTCTAAGTTT+TGG 0.276457 8_1:-80095174 None:intergenic
TTCACCACCTTCTCTGTCTC+AGG 0.276907 8_1:-80093589 None:intergenic
AAACTTGGGTTTGATCTCTT+TGG 0.278212 8_1:+80093424 Msa1217640:CDS
AAACTTGGGTTTGATCTCTT+TGG 0.278212 8_1:+80095976 Msa1217640:CDS
CTATTGTGGGGTGTAGAAAA+AGG 0.278471 8_1:+80093473 Msa1217640:CDS
AACTCTTCCAAACGATTTGC+TGG 0.310452 8_1:+80093036 Msa1217640:CDS
CGTTTATCAACATGCAACTA+TGG 0.338892 8_1:+80093156 Msa1217640:CDS
CGTTTATCAACATGCAACTA+TGG 0.338892 8_1:+80095708 Msa1217640:CDS
TCCGGTTCAGATAGAACTTC+CGG 0.338953 8_1:+80095096 Msa1217640:CDS
GATTTCTTTCTTGACTCTTA+AGG 0.371595 8_1:-80092966 None:intergenic
TTACGATGCTTATGGGTGTT+TGG 0.388503 8_1:-80093012 None:intergenic
TCCATAGGCATTACTATTGT+GGG 0.413887 8_1:+80096012 Msa1217640:CDS
GCAGTATTTCAGTACTTTGA+TGG 0.417476 8_1:+80093291 Msa1217640:CDS
GCAGTATTTCAGTACTTTGA+TGG 0.417476 8_1:+80095843 Msa1217640:CDS
GATGAAGAAGGAAGAAAACT+TGG 0.418628 8_1:+80093409 Msa1217640:CDS
GATGAAGAAGGAAGAAAACT+TGG 0.418628 8_1:+80095961 Msa1217640:CDS
GAAACACTCAACATGGTTCA+TGG 0.438466 8_1:+80093612 Msa1217640:CDS
TCCACAGGCATTACTATTGT+GGG 0.440154 8_1:+80093460 Msa1217640:CDS
CCTTCTCTGTCTCAGGGTTG+TGG 0.443318 8_1:-80093582 None:intergenic
TTGCATTGGTTCCACTTCCA+TGG 0.446150 8_1:+80093185 Msa1217640:CDS
TTGCATTGGTTCCACTTCCA+TGG 0.446150 8_1:+80095737 Msa1217640:CDS
GAAGGTCGCGTCACGTTCCA+TGG 0.456912 8_1:+80093072 Msa1217640:CDS
ATATTAACCAGCAAATCGTT+TGG 0.462380 8_1:-80093043 None:intergenic
CTCGGTGTGAACCGGTGACC+CGG 0.470667 8_1:-80095115 None:intergenic
CCCGGAAGTTCTATCTGAAC+CGG 0.471927 8_1:-80095097 None:intergenic
ATCCATAGGCATTACTATTG+TGG 0.475858 8_1:+80096011 Msa1217640:CDS
CCAATCAGCTCGGTGTGAAC+CGG 0.476663 8_1:-80095123 None:intergenic
TCACCACCTTCTCTGTCTCA+GGG 0.476807 8_1:-80093588 None:intergenic
AACTATGGATAAGTTTGCAT+TGG 0.477921 8_1:+80093171 Msa1217640:CDS
AACTATGGATAAGTTTGCAT+TGG 0.477921 8_1:+80095723 Msa1217640:CDS
TTGTAAAGAAAGCGGTAACT+TGG 0.481445 8_1:+80093243 Msa1217640:CDS
TTGTAAAGAAAGCGGTAACT+TGG 0.481445 8_1:+80095795 Msa1217640:CDS
CCGGTTCACACCGAGCTGAT+TGG 0.490962 8_1:+80095123 Msa1217640:CDS
CCGGTTCAGATAGAACTTCC+GGG 0.492196 8_1:+80095097 Msa1217640:CDS
TTCCACAGGCATTACTATTG+TGG 0.499049 8_1:+80093459 Msa1217640:CDS
TCATCGGTGAACCATGGAAG+TGG 0.502356 8_1:-80093196 None:intergenic
TCATCGGTGAACCATGGAAG+TGG 0.502356 8_1:-80095748 None:intergenic
TTTCTTAATGCTTCAGAAGA+CGG 0.509925 8_1:+80093130 Msa1217640:CDS
CCCCACAATAGTAATGCCTA+TGG 0.510338 8_1:-80096013 None:intergenic
AACCGGACCCCTAACCGGTC+CGG 0.512749 8_1:-80095186 None:intergenic
CTATTGTGGGGTGTAGAAAG+AGG 0.513714 8_1:+80096025 Msa1217640:CDS
AGATAGAACTTCCGGGTCAC+CGG 0.520678 8_1:+80095104 Msa1217640:CDS
GTTATTGCTTCAGACCGGTC+CGG 0.520732 8_1:+80095078 Msa1217640:intron
TTGGAGATTATTTATCGTGA+AGG 0.526959 8_1:+80093262 Msa1217640:CDS
TTGGAGATTATTTATCGTGA+AGG 0.526959 8_1:+80095814 Msa1217640:CDS
CGATTTGCTGGTTAATATCG+TGG 0.527060 8_1:+80093048 Msa1217640:CDS
AATCTTTCATTCAAAGCATG+TGG 0.527792 8_1:+80093500 Msa1217640:CDS
GTTGTGGTGGCTCAAAATCA+AGG 0.528728 8_1:+80093532 Msa1217640:CDS
AGTACTTTGATGGTTGATGT+TGG 0.529050 8_1:+80093301 Msa1217640:CDS
AGTACTTTGATGGTTGATGT+TGG 0.529050 8_1:+80095853 Msa1217640:CDS
GTTGTGGTGGCTCAAAATCA+AGG 0.531210 8_1:+80096084 Msa1217640:CDS
GAATTTGATAATGATGATGT+TGG 0.545329 8_1:+80093637 Msa1217640:CDS
AACCGATCCAAAACTTAGAC+CGG 0.551629 8_1:+80095167 Msa1217640:CDS
ATGAAGAAGGAAGAAAACTT+GGG 0.555650 8_1:+80093410 Msa1217640:CDS
ATGAAGAAGGAAGAAAACTT+GGG 0.555650 8_1:+80095962 Msa1217640:CDS
GATTTGCTGGTTAATATCGT+GGG 0.560152 8_1:+80093049 Msa1217640:CDS
TTGAAGAAGGTTGCACTAGA+GGG 0.560780 8_1:+80093334 Msa1217640:CDS
TTTGAAGAAGGTTGCACTAG+AGG 0.562247 8_1:+80093333 Msa1217640:CDS
TGGTTTGAAGAATTTGAAGA+AGG 0.573775 8_1:+80095873 Msa1217640:CDS
GCTGGTTAATATCGTGGGGA+AGG 0.574024 8_1:+80093054 Msa1217640:CDS
GATTATTTATCGTGAAGGAA+TGG 0.575748 8_1:+80093267 Msa1217640:CDS
GATTATTTATCGTGAAGGAA+TGG 0.575748 8_1:+80095819 Msa1217640:CDS
TTTGAAGAAGGCTGCACTAG+AGG 0.578023 8_1:+80095885 Msa1217640:CDS
TTGAAGAAGGCTGCACTAGA+GGG 0.579675 8_1:+80095886 Msa1217640:CDS
TGGTTTGAAGAATTTGAAGA+AGG 0.582243 8_1:+80093321 Msa1217640:CDS
TATTGTGGGGTGTAGAAAGA+GGG 0.594191 8_1:+80096026 Msa1217640:CDS
ATCTTTCATTCAAAGCATGT+GGG 0.595971 8_1:+80093501 Msa1217640:CDS
AAGTTCTATCTGAACCGGAC+CGG 0.604667 8_1:-80095092 None:intergenic
TTGAGCCGTTGTAAAGAAAG+CGG 0.605024 8_1:+80093235 Msa1217640:CDS
TTGAGCCGTTGTAAAGAAAG+CGG 0.605024 8_1:+80095787 Msa1217640:CDS
AGTTACCGCTTTCTTTACAA+CGG 0.624471 8_1:-80093240 None:intergenic
AGTTACCGCTTTCTTTACAA+CGG 0.624471 8_1:-80095792 None:intergenic
ATCCAAAACTTAGACCGGAC+CGG 0.624999 8_1:+80095172 Msa1217640:CDS
GCTAACTGTGATGATGAAGA+AGG 0.625353 8_1:+80093397 Msa1217640:CDS
GCTAACTGTGATGATGAAGA+AGG 0.625353 8_1:+80095949 Msa1217640:CDS
GTGGGTGAAGAATGTTGTGG+TGG 0.626873 8_1:+80093519 Msa1217640:CDS
GTGGGTGAAGAATGTTGTGG+TGG 0.626873 8_1:+80096071 Msa1217640:CDS
GATCGGTTATGCAATCAGCT+CGG 0.633184 8_1:-80095152 None:intergenic
CAACCCTGAGACAGAGAAGG+TGG 0.639230 8_1:+80093585 Msa1217640:CDS
ATTTGCTGGTTAATATCGTG+GGG 0.649428 8_1:+80093050 Msa1217640:CDS
CCACAGGCATTACTATTGTG+GGG 0.651049 8_1:+80093461 Msa1217640:CDS
TTTACAACGGCTCAAGAACG+AGG 0.653563 8_1:-80093227 None:intergenic
TTTACAACGGCTCAAGAACG+AGG 0.653563 8_1:-80095779 None:intergenic
CCACAACCCTGAGACAGAGA+AGG 0.656673 8_1:+80093582 Msa1217640:CDS
TCGGTGTGAACCAATCAGCT+CGG 0.663639 8_1:-80095133 None:intergenic
CCATAGGCATTACTATTGTG+GGG 0.663948 8_1:+80096013 Msa1217640:CDS
GGTGTTTGCAAATATTGCGA+CGG 0.668808 8_1:+80093658 Msa1217640:CDS
CCCCACAATAGTAATGCCTG+TGG 0.671676 8_1:-80093461 None:intergenic
TGGTGAAGAAACACTCAACA+TGG 0.674981 8_1:+80093605 Msa1217640:CDS
CATGTGGGTGAAGAATGTTG+TGG 0.829903 8_1:+80093516 Msa1217640:CDS
CATGTGGGTGAAGAATGTTG+TGG 0.829903 8_1:+80096068 Msa1217640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGTAAGATGTTT+CGG + chr8_1:80093695-80093714 Msa1217640:intron 15.0%
!! TGTTTAGATTAAATTTGTAT+AGG + chr8_1:80094565-80094584 Msa1217640:intron 15.0%
!!! TGTGTTATTATTTTAGTTTT+TGG - chr8_1:80094635-80094654 None:intergenic 15.0%
!!! TAAACATCATTTCATATTTT+CGG - chr8_1:80094870-80094889 None:intergenic 15.0%
!! AGTTATAATAACATATGTTT+GGG - chr8_1:80094893-80094912 None:intergenic 15.0%
!! TAGTTATAATAACATATGTT+TGG - chr8_1:80094894-80094913 None:intergenic 15.0%
!!! TTTATTTTGTAAGATGTTTC+GGG + chr8_1:80093696-80093715 Msa1217640:intron 20.0%
!! TAACTTGAATAAAAAACACA+GGG - chr8_1:80093929-80093948 None:intergenic 20.0%
!! TCCATAATTATATTTGTTTG+TGG + chr8_1:80093970-80093989 Msa1217640:intron 20.0%
!! ACCACAAACAAATATAATTA+TGG - chr8_1:80093974-80093993 None:intergenic 20.0%
!!! TTTTTTTGAGAGAAAATAGA+AGG - chr8_1:80094120-80094139 None:intergenic 20.0%
!!! AATGTATTTTCGAAACATTA+AGG - chr8_1:80094312-80094331 None:intergenic 20.0%
!!! AAATACATTTTTCATGTGAT+TGG + chr8_1:80094323-80094342 Msa1217640:intron 20.0%
!! TACAAATTTAATCTAAACAC+CGG - chr8_1:80094564-80094583 None:intergenic 20.0%
!! ATTTGTATAGGTATTTAATC+AGG + chr8_1:80094577-80094596 Msa1217640:intron 20.0%
!! ATTGAATATGCTGTAAAAAA+TGG - chr8_1:80095050-80095069 None:intergenic 20.0%
! AAGCATAGAGTAAACATATT+TGG - chr8_1:80093371-80093390 None:intergenic 25.0%
!!! GAATTTGATAATGATGATGT+TGG + chr8_1:80093637-80093656 Msa1217640:CDS 25.0%
! AGAAACTCAAAAATTGAAGT+TGG + chr8_1:80093868-80093887 Msa1217640:intron 25.0%
! GTAACTTGAATAAAAAACAC+AGG - chr8_1:80093930-80093949 None:intergenic 25.0%
! AAGTATAGAAACGTAAACTA+TGG + chr8_1:80094037-80094056 Msa1217640:intron 25.0%
!!! AATCATTCGTATTGCTTTTT+TGG + chr8_1:80094203-80094222 Msa1217640:intron 25.0%
!!! ATCATTCGTATTGCTTTTTT+GGG + chr8_1:80094204-80094223 Msa1217640:intron 25.0%
!!! GAGACCATAATTTTAAAACT+CGG + chr8_1:80094423-80094442 Msa1217640:intron 25.0%
! ACAAATTTAATCTAAACACC+GGG - chr8_1:80094563-80094582 None:intergenic 25.0%
! GGTATTTAATCAGGTTAAAT+CGG + chr8_1:80094586-80094605 Msa1217640:intron 25.0%
! GTCTATGAAATTATGTTTGT+TGG - chr8_1:80094675-80094694 None:intergenic 25.0%
!!! ATATGTGAAGTTTTATCAGA+CGG + chr8_1:80094805-80094824 Msa1217640:intron 25.0%
! AAAAACAATTTGTGCTTTAG+TGG + chr8_1:80094935-80094954 Msa1217640:intron 25.0%
! AACGAATATGCTGTAAAAAA+TGG - chr8_1:80095012-80095031 None:intergenic 25.0%
! TTTCTTAATGTTTCAGAAGA+CGG + chr8_1:80095327-80095346 Msa1217640:intron 25.0%
! AAGCATAGAGTAAACATATT+TGG - chr8_1:80093371-80093390 None:intergenic 25.0%
!! AATCTTTTATTCAAAGCATG+TGG + chr8_1:80096052-80096071 Msa1217640:CDS 25.0%
!! ATCTTTTATTCAAAGCATGT+GGG + chr8_1:80096053-80096072 Msa1217640:CDS 25.0%
GATTTCTTTCTTGACTCTTA+AGG - chr8_1:80092969-80092988 None:intergenic 30.0%
! AGAGTTTTTACGATGCTTAT+GGG - chr8_1:80093022-80093041 None:intergenic 30.0%
! AAGAGTTTTTACGATGCTTA+TGG - chr8_1:80093023-80093042 None:intergenic 30.0%
ATATTAACCAGCAAATCGTT+TGG - chr8_1:80093046-80093065 None:intergenic 30.0%
TTTCTTAATGCTTCAGAAGA+CGG + chr8_1:80093130-80093149 Msa1217640:CDS 30.0%
AACTATGGATAAGTTTGCAT+TGG + chr8_1:80093171-80093190 Msa1217640:CDS 30.0%
TTGGAGATTATTTATCGTGA+AGG + chr8_1:80093262-80093281 Msa1217640:CDS 30.0%
GATTATTTATCGTGAAGGAA+TGG + chr8_1:80093267-80093286 Msa1217640:CDS 30.0%
TGGTTTGAAGAATTTGAAGA+AGG + chr8_1:80093321-80093340 Msa1217640:CDS 30.0%
! TGTTTACTCTATGCTTTTGA+TGG + chr8_1:80093375-80093394 Msa1217640:CDS 30.0%
ATGAAGAAGGAAGAAAACTT+GGG + chr8_1:80093410-80093429 Msa1217640:CDS 30.0%
AATCTTTCATTCAAAGCATG+TGG + chr8_1:80093500-80093519 Msa1217640:CDS 30.0%
ATCTTTCATTCAAAGCATGT+GGG + chr8_1:80093501-80093520 Msa1217640:CDS 30.0%
ATAGGAAAAAGCCTAAAAAC+AGG + chr8_1:80093768-80093787 Msa1217640:intron 30.0%
TCTATACTTCATGATAATCG+TGG - chr8_1:80094026-80094045 None:intergenic 30.0%
TACTCTGAATCATGAAAAGT+TGG - chr8_1:80094069-80094088 None:intergenic 30.0%
TGAGAGAAAATAGAAGGATT+TGG - chr8_1:80094114-80094133 None:intergenic 30.0%
!!! CATAATTTTAAAACTCGGCT+CGG + chr8_1:80094428-80094447 Msa1217640:intron 30.0%
!! TATGTGAAGTTTTATCAGAC+GGG + chr8_1:80094806-80094825 Msa1217640:intron 30.0%
AGACGGGAAAAAAAATTTGA+TGG + chr8_1:80094822-80094841 Msa1217640:intron 30.0%
!! CTGTAAAAAATGGCTTTAGT+GGG - chr8_1:80095002-80095021 None:intergenic 30.0%
!! AATTTGTTATTGCTTCAGAC+CGG + chr8_1:80095073-80095092 Msa1217640:intron 30.0%
AACTATGGATAAGTTTGCAT+TGG + chr8_1:80093171-80093190 Msa1217640:CDS 30.0%
TTTCTTAATGCTTCAGAAGA+CGG + chr8_1:80093130-80093149 Msa1217640:CDS 30.0%
AACTATGGATAAGTTTGCAT+TGG + chr8_1:80093171-80093190 Msa1217640:CDS 30.0%
AACTATGGATAAGTTTGCAT+TGG + chr8_1:80093171-80093190 Msa1217640:CDS 30.0%
TTGGAGATTATTTATCGTGA+AGG + chr8_1:80093262-80093281 Msa1217640:CDS 30.0%
GATTATTTATCGTGAAGGAA+TGG + chr8_1:80093267-80093286 Msa1217640:CDS 30.0%
TGGTTTGAAGAATTTGAAGA+AGG + chr8_1:80093321-80093340 Msa1217640:CDS 30.0%
! TGTTTACTCTATGCTTTTGA+TGG + chr8_1:80093375-80093394 Msa1217640:CDS 30.0%
ATGAAGAAGGAAGAAAACTT+GGG + chr8_1:80093410-80093429 Msa1217640:CDS 30.0%
!!! GTTTGGTTTTTGCGGATTTT+AGG - chr8_1:80092998-80093017 None:intergenic 35.0%
!!! TTATGGGTGTTTGGTTTTTG+CGG - chr8_1:80093006-80093025 None:intergenic 35.0%
!! GATTTGCTGGTTAATATCGT+GGG + chr8_1:80093049-80093068 Msa1217640:CDS 35.0%
! ATTTGCTGGTTAATATCGTG+GGG + chr8_1:80093050-80093069 Msa1217640:CDS 35.0%
! GATTTTGCAAAGATCAACCA+TGG - chr8_1:80093092-80093111 None:intergenic 35.0%
CGTTTATCAACATGCAACTA+TGG + chr8_1:80093156-80093175 Msa1217640:CDS 35.0%
!! GAACGAGGTTTCTTTTTCAT+CGG - chr8_1:80093215-80093234 None:intergenic 35.0%
AGTTACCGCTTTCTTTACAA+CGG - chr8_1:80093243-80093262 None:intergenic 35.0%
TTGTAAAGAAAGCGGTAACT+TGG + chr8_1:80093243-80093262 Msa1217640:CDS 35.0%
GCAGTATTTCAGTACTTTGA+TGG + chr8_1:80093291-80093310 Msa1217640:CDS 35.0%
! AGTACTTTGATGGTTGATGT+TGG + chr8_1:80093301-80093320 Msa1217640:CDS 35.0%
GATGAAGAAGGAAGAAAACT+TGG + chr8_1:80093409-80093428 Msa1217640:CDS 35.0%
AAACTTGGGTTTGATCTCTT+TGG + chr8_1:80093424-80093443 Msa1217640:CDS 35.0%
TATTGTGGGGTGTAGAAAAA+GGG + chr8_1:80093474-80093493 Msa1217640:CDS 35.0%
TCGGGTATAACTATGTAAAC+TGG + chr8_1:80093714-80093733 Msa1217640:intron 35.0%
TAGTACGTTAGCATGAGAAT+AGG + chr8_1:80093750-80093769 Msa1217640:intron 35.0%
!! CTTGAACTAAGCCTGTTTTT+AGG - chr8_1:80093782-80093801 None:intergenic 35.0%
! CATGTGATTGGTTAAAGTGA+AGG + chr8_1:80094335-80094354 Msa1217640:intron 35.0%
ATTCATGTGAAAGTGAAGCT+TGG + chr8_1:80094365-80094384 Msa1217640:intron 35.0%
AAAATTATGGTCTCGTGCAT+TGG - chr8_1:80094417-80094436 None:intergenic 35.0%
!!! CGAGCCGAGTTTTAAAATTA+TGG - chr8_1:80094430-80094449 None:intergenic 35.0%
ATGACTGAATCGGATCAAAT+CGG + chr8_1:80094520-80094539 Msa1217640:intron 35.0%
ACAATTTGTGCTTTAGTGGT+TGG + chr8_1:80094939-80094958 Msa1217640:intron 35.0%
CAATTTGTGCTTTAGTGGTT+GGG + chr8_1:80094940-80094959 Msa1217640:intron 35.0%
!!! TGGGAGCGTTTTCTATAATA+AGG + chr8_1:80094959-80094978 Msa1217640:intron 35.0%
!!! GGGAGCGTTTTCTATAATAA+GGG + chr8_1:80094960-80094979 Msa1217640:intron 35.0%
!! GGAGCGTTTTCTATAATAAG+GGG + chr8_1:80094961-80094980 Msa1217640:intron 35.0%
! GAGCGTTTTCTATAATAAGG+GGG + chr8_1:80094962-80094981 Msa1217640:intron 35.0%
!! GCTGTAAAAAATGGCTTTAG+TGG - chr8_1:80095003-80095022 None:intergenic 35.0%
!! CTGTAAAAAATGGCTTTAGC+GGG - chr8_1:80095040-80095059 None:intergenic 35.0%
!! GCTGTAAAAAATGGCTTTAG+CGG - chr8_1:80095003-80095022 None:intergenic 35.0%
TAACCAGCAAGCAAATTTCT+CGG - chr8_1:80095241-80095260 None:intergenic 35.0%
! TTGCTTGCTGGTTAATATAG+TGG + chr8_1:80095247-80095266 Msa1217640:intron 35.0%
! TGCTTGCTGGTTAATATAGT+GGG + chr8_1:80095248-80095267 Msa1217640:intron 35.0%
! GATTTTGCAAAGATCAACCA+TGG - chr8_1:80093092-80093111 None:intergenic 35.0%
CGTTTATCAACATGCAACTA+TGG + chr8_1:80093156-80093175 Msa1217640:CDS 35.0%
!! TCTTTTTCATCGATGAACCA+TGG - chr8_1:80095411-80095430 None:intergenic 35.0%
AGTTACCGCTTTCTTTACAA+CGG - chr8_1:80093243-80093262 None:intergenic 35.0%
TTGTAAAGAAAGCGGTAACT+TGG + chr8_1:80093243-80093262 Msa1217640:CDS 35.0%
CGTTTATCAACATGCAACTA+TGG + chr8_1:80093156-80093175 Msa1217640:CDS 35.0%
!! TCTTTTTCATCGATGAACCA+TGG - chr8_1:80095411-80095430 None:intergenic 35.0%
AGTTACCGCTTTCTTTACAA+CGG - chr8_1:80093243-80093262 None:intergenic 35.0%
TTGTAAAGAAAGCGGTAACT+TGG + chr8_1:80093243-80093262 Msa1217640:CDS 35.0%
CGTTTATCAACATGCAACTA+TGG + chr8_1:80093156-80093175 Msa1217640:CDS 35.0%
!! GAACGAGGTTTCTTTTTCAT+CGG - chr8_1:80093215-80093234 None:intergenic 35.0%
AGTTACCGCTTTCTTTACAA+CGG - chr8_1:80093243-80093262 None:intergenic 35.0%
TTGTAAAGAAAGCGGTAACT+TGG + chr8_1:80093243-80093262 Msa1217640:CDS 35.0%
GCAGTATTTCAGTACTTTGA+TGG + chr8_1:80093291-80093310 Msa1217640:CDS 35.0%
! AGTACTTTGATGGTTGATGT+TGG + chr8_1:80093301-80093320 Msa1217640:CDS 35.0%
GATGAAGAAGGAAGAAAACT+TGG + chr8_1:80093409-80093428 Msa1217640:CDS 35.0%
AAACTTGGGTTTGATCTCTT+TGG + chr8_1:80093424-80093443 Msa1217640:CDS 35.0%
! GGTGAGTTGAAAAAATCCAT+AGG + chr8_1:80095997-80096016 Msa1217640:CDS 35.0%
ATCCATAGGCATTACTATTG+TGG + chr8_1:80096011-80096030 Msa1217640:CDS 35.0%
TCCATAGGCATTACTATTGT+GGG + chr8_1:80096012-80096031 Msa1217640:CDS 35.0%
TTACGATGCTTATGGGTGTT+TGG - chr8_1:80093015-80093034 None:intergenic 40.0%
AACTCTTCCAAACGATTTGC+TGG + chr8_1:80093036-80093055 Msa1217640:CDS 40.0%
!! CGATTTGCTGGTTAATATCG+TGG + chr8_1:80093048-80093067 Msa1217640:CDS 40.0%
!! TCTTTTTCATCGGTGAACCA+TGG - chr8_1:80093205-80093224 None:intergenic 40.0%
TTGAGCCGTTGTAAAGAAAG+CGG + chr8_1:80093235-80093254 Msa1217640:CDS 40.0%
TTTGAAGAAGGTTGCACTAG+AGG + chr8_1:80093333-80093352 Msa1217640:CDS 40.0%
TTGAAGAAGGTTGCACTAGA+GGG + chr8_1:80093334-80093353 Msa1217640:CDS 40.0%
! GCTAACTGTGATGATGAAGA+AGG + chr8_1:80093397-80093416 Msa1217640:CDS 40.0%
! GGTGAGTTGAAAAATTCCAC+AGG + chr8_1:80093445-80093464 Msa1217640:CDS 40.0%
TTCCACAGGCATTACTATTG+TGG + chr8_1:80093459-80093478 Msa1217640:CDS 40.0%
TCCACAGGCATTACTATTGT+GGG + chr8_1:80093460-80093479 Msa1217640:CDS 40.0%
CTATTGTGGGGTGTAGAAAA+AGG + chr8_1:80093473-80093492 Msa1217640:CDS 40.0%
TGGTGAAGAAACACTCAACA+TGG + chr8_1:80093605-80093624 Msa1217640:CDS 40.0%
GAAACACTCAACATGGTTCA+TGG + chr8_1:80093612-80093631 Msa1217640:CDS 40.0%
GGTGTTTGCAAATATTGCGA+CGG + chr8_1:80093658-80093677 Msa1217640:CDS 40.0%
TCGTGGAGAATTAACAGAGA+GGG - chr8_1:80094009-80094028 None:intergenic 40.0%
ATCGTGGAGAATTAACAGAG+AGG - chr8_1:80094010-80094029 None:intergenic 40.0%
CACGCAATCTCAGAAATTGA+AGG - chr8_1:80094155-80094174 None:intergenic 40.0%
TGTGAAAGTGAAGCTTGGTT+TGG + chr8_1:80094370-80094389 Msa1217640:intron 40.0%
TTTGATCCGATTCAGTCATG+CGG - chr8_1:80094519-80094538 None:intergenic 40.0%
CAGGTTAAATCGGATTGAAC+CGG + chr8_1:80094596-80094615 Msa1217640:intron 40.0%
AACCGATCCAAAACTTAGAC+CGG + chr8_1:80095167-80095186 Msa1217640:CDS 40.0%
! GCTTGCTGGTTAATATAGTG+GGG + chr8_1:80095249-80095268 Msa1217640:intron 40.0%
TTGAGCCGTTGTAAAGAAAG+CGG + chr8_1:80093235-80093254 Msa1217640:CDS 40.0%
TTGAGCCGTTGTAAAGAAAG+CGG + chr8_1:80093235-80093254 Msa1217640:CDS 40.0%
!! TCTTTTTCATCGGTGAACCA+TGG - chr8_1:80093205-80093224 None:intergenic 40.0%
TTGAGCCGTTGTAAAGAAAG+CGG + chr8_1:80093235-80093254 Msa1217640:CDS 40.0%
! GCTAACTGTGATGATGAAGA+AGG + chr8_1:80093397-80093416 Msa1217640:CDS 40.0%
CCATAGGCATTACTATTGTG+GGG + chr8_1:80096013-80096032 Msa1217640:CDS 40.0%
TATTGTGGGGTGTAGAAAGA+GGG + chr8_1:80096026-80096045 Msa1217640:CDS 40.0%
!! TTGCATTGGTTCCACTTCCA+TGG + chr8_1:80093185-80093204 Msa1217640:CDS 45.0%
TTTACAACGGCTCAAGAACG+AGG - chr8_1:80093230-80093249 None:intergenic 45.0%
CCACAGGCATTACTATTGTG+GGG + chr8_1:80093461-80093480 Msa1217640:CDS 45.0%
CATGTGGGTGAAGAATGTTG+TGG + chr8_1:80093516-80093535 Msa1217640:CDS 45.0%
GTTGTGGTGGCTCAAAATCA+AGG + chr8_1:80093532-80093551 Msa1217640:CDS 45.0%
GTTGAACCGCATGACTGAAT+CGG + chr8_1:80094510-80094529 Msa1217640:intron 45.0%
TCGGATCAAATCGGATGACT+CGG + chr8_1:80094529-80094548 Msa1217640:intron 45.0%
!! GATGACTCGGTAAGATAACC+CGG + chr8_1:80094542-80094561 Msa1217640:intron 45.0%
AAGTTCTATCTGAACCGGAC+CGG - chr8_1:80095095-80095114 None:intergenic 45.0%
TCCGGTTCAGATAGAACTTC+CGG + chr8_1:80095096-80095115 Msa1217640:CDS 45.0%
GATCGGTTATGCAATCAGCT+CGG - chr8_1:80095155-80095174 None:intergenic 45.0%
!!! GTCCGGTCTAAGTTTTGGAT+CGG - chr8_1:80095172-80095191 None:intergenic 45.0%
ATCCAAAACTTAGACCGGAC+CGG + chr8_1:80095172-80095191 Msa1217640:CDS 45.0%
AGCAAGCAAATTTCTCGGAC+CGG - chr8_1:80095236-80095255 None:intergenic 45.0%
! GCTGGTTAATATAGTGGGGA+AGG + chr8_1:80095253-80095272 Msa1217640:intron 45.0%
!! TTGCATTGGTTCCACTTCCA+TGG + chr8_1:80093185-80093204 Msa1217640:CDS 45.0%
TCATCGATGAACCATGGAAG+TGG - chr8_1:80095405-80095424 None:intergenic 45.0%
TTTACAACGGCTCAAGAACG+AGG - chr8_1:80093230-80093249 None:intergenic 45.0%
!! TTGCATTGGTTCCACTTCCA+TGG + chr8_1:80093185-80093204 Msa1217640:CDS 45.0%
TCATCGATGAACCATGGAAG+TGG - chr8_1:80095405-80095424 None:intergenic 45.0%
TTTACAACGGCTCAAGAACG+AGG - chr8_1:80093230-80093249 None:intergenic 45.0%
!! TTGCATTGGTTCCACTTCCA+TGG + chr8_1:80093185-80093204 Msa1217640:CDS 45.0%
TTTACAACGGCTCAAGAACG+AGG - chr8_1:80093230-80093249 None:intergenic 45.0%
TTTGAAGAAGGCTGCACTAG+AGG + chr8_1:80095885-80095904 Msa1217640:CDS 45.0%
TTGAAGAAGGCTGCACTAGA+GGG + chr8_1:80095886-80095905 Msa1217640:CDS 45.0%
CCCCACAATAGTAATGCCTA+TGG - chr8_1:80096016-80096035 None:intergenic 45.0%
CTATTGTGGGGTGTAGAAAG+AGG + chr8_1:80096025-80096044 Msa1217640:CDS 45.0%
CATGTGGGTGAAGAATGTTG+TGG + chr8_1:80093516-80093535 Msa1217640:CDS 45.0%
GTTGTGGTGGCTCAAAATCA+AGG + chr8_1:80093532-80093551 Msa1217640:CDS 45.0%
GCTGGTTAATATCGTGGGGA+AGG + chr8_1:80093054-80093073 Msa1217640:CDS 50.0%
TCATCGGTGAACCATGGAAG+TGG - chr8_1:80093199-80093218 None:intergenic 50.0%
CCCCACAATAGTAATGCCTG+TGG - chr8_1:80093464-80093483 None:intergenic 50.0%
GTGGGTGAAGAATGTTGTGG+TGG + chr8_1:80093519-80093538 Msa1217640:CDS 50.0%
TCACCACCTTCTCTGTCTCA+GGG - chr8_1:80093591-80093610 None:intergenic 50.0%
TTCACCACCTTCTCTGTCTC+AGG - chr8_1:80093592-80093611 None:intergenic 50.0%
!! ATCGACTCGGCATAGGTACT+GGG + chr8_1:80094453-80094472 Msa1217640:intron 50.0%
ATCGGATTGAACCGGTGACT+CGG + chr8_1:80094604-80094623 Msa1217640:intron 50.0%
!!! TTTTGGAGTGACCGAGTCAC+CGG - chr8_1:80094618-80094637 None:intergenic 50.0%
GTTATTGCTTCAGACCGGTC+CGG + chr8_1:80095078-80095097 Msa1217640:intron 50.0%
CCCGGAAGTTCTATCTGAAC+CGG - chr8_1:80095100-80095119 None:intergenic 50.0%
CCGGTTCAGATAGAACTTCC+GGG + chr8_1:80095097-80095116 Msa1217640:CDS 50.0%
AGATAGAACTTCCGGGTCAC+CGG + chr8_1:80095104-80095123 Msa1217640:CDS 50.0%
TCGGTGTGAACCAATCAGCT+CGG - chr8_1:80095136-80095155 None:intergenic 50.0%
! AACCGGTCCGGTCTAAGTTT+TGG - chr8_1:80095177-80095196 None:intergenic 50.0%
AAACTTAGACCGGACCGGTT+AGG + chr8_1:80095177-80095196 Msa1217640:intron 50.0%
AACTTAGACCGGACCGGTTA+GGG + chr8_1:80095178-80095197 Msa1217640:intron 50.0%
! GGTCCGAGAAATTTGCTTGC+TGG + chr8_1:80095235-80095254 Msa1217640:intron 50.0%
TCATCGGTGAACCATGGAAG+TGG - chr8_1:80093199-80093218 None:intergenic 50.0%
GTGGGTGAAGAATGTTGTGG+TGG + chr8_1:80093519-80093538 Msa1217640:CDS 50.0%
CCTTCTCTGTCTCAGGGTTG+TGG - chr8_1:80093585-80093604 None:intergenic 55.0%
CCACAACCCTGAGACAGAGA+AGG + chr8_1:80093582-80093601 Msa1217640:CDS 55.0%
CAACCCTGAGACAGAGAAGG+TGG + chr8_1:80093585-80093604 Msa1217640:CDS 55.0%
!! CATCGACTCGGCATAGGTAC+TGG + chr8_1:80094452-80094471 Msa1217640:intron 55.0%
GTACTGGGTCACTGAGTCGA+TGG + chr8_1:80094468-80094487 Msa1217640:intron 55.0%
TGGTCGAACCATCGAGTCAC+TGG + chr8_1:80094488-80094507 Msa1217640:intron 55.0%
CGGTTCAACCAGTGACTCGA+TGG - chr8_1:80094499-80094518 None:intergenic 55.0%
!! CCAATCAGCTCGGTGTGAAC+CGG - chr8_1:80095126-80095145 None:intergenic 55.0%
ACTTAGACCGGACCGGTTAG+GGG + chr8_1:80095179-80095198 Msa1217640:intron 55.0%
GAAGGTCGCGTCACGTTCCA+TGG + chr8_1:80093072-80093091 Msa1217640:CDS 60.0%
!! ACTCGGCTCGGTCATCGACT+CGG + chr8_1:80094440-80094459 Msa1217640:intron 60.0%
!! CTCGGTCATCGACTCGGCAT+AGG + chr8_1:80094446-80094465 Msa1217640:intron 60.0%
CCGGTTCACACCGAGCTGAT+TGG + chr8_1:80095123-80095142 Msa1217640:CDS 60.0%
CGCTCGGTTGAACCGTGAAC+CGG - chr8_1:80095206-80095225 None:intergenic 60.0%
CGGTTCACGGTTCAACCGAG+CGG + chr8_1:80095204-80095223 Msa1217640:intron 60.0%
TTCAACCGAGCGGTCTGGTC+CGG + chr8_1:80095214-80095233 Msa1217640:intron 60.0%
! CTCGGTGTGAACCGGTGACC+CGG - chr8_1:80095118-80095137 None:intergenic 65.0%
AACCGGACCCCTAACCGGTC+CGG - chr8_1:80095189-80095208 None:intergenic 65.0%
CCGTGAACCGGACCCCTAAC+CGG - chr8_1:80095194-80095213 None:intergenic 65.0%
CCGGTTAGGGGTCCGGTTCA+CGG + chr8_1:80095191-80095210 Msa1217640:intron 65.0%
CACGGTTCAACCGAGCGGTC+TGG + chr8_1:80095209-80095228 Msa1217640:intron 65.0%
! GGAAGGCGCGTCACGTTCCA+TGG + chr8_1:80095270-80095289 Msa1217640:intron 65.0%
GACCGGACCGGTTAGGGGTC+CGG + chr8_1:80095184-80095203 Msa1217640:intron 70.0%
TCGGACCGGACCAGACCGCT+CGG - chr8_1:80095222-80095241 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 80092959 80096125 80092959 ID=Msa1217640;Name=Msa1217640
chr8_1 mRNA 80092959 80096125 80092959 ID=Msa1217640-mRNA-1;Parent=Msa1217640;Name=Msa1217640-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.66|1|1|3|0|433
chr8_1 exon 80092959 80093703 80092959 ID=Msa1217640-mRNA-1:exon:28004;Parent=Msa1217640-mRNA-1
chr8_1 exon 80095091 80095193 80095091 ID=Msa1217640-mRNA-1:exon:28005;Parent=Msa1217640-mRNA-1
chr8_1 exon 80095672 80096125 80095672 ID=Msa1217640-mRNA-1:exon:28006;Parent=Msa1217640-mRNA-1
chr8_1 CDS 80092959 80093703 80092959 ID=Msa1217640-mRNA-1:cds;Parent=Msa1217640-mRNA-1
chr8_1 CDS 80095091 80095193 80095091 ID=Msa1217640-mRNA-1:cds;Parent=Msa1217640-mRNA-1
chr8_1 CDS 80095672 80096125 80095672 ID=Msa1217640-mRNA-1:cds;Parent=Msa1217640-mRNA-1
Gene Sequence

>Msa1217640

ATGGCTTCCTTAAGAGTCAAGAAAGAAATCAATAAACCTAAAATCCGCAAAAACCAAACACCCATAAGCATCGTAAAAACTCTTCCAAACGATTTGCTGGTTAATATCGTGGGGAAGGTCGCGTCACGTTCCATGGTTGATCTTTGCAAAATCAAATTAAGCTGCAAAGAGTTTCTTAATGCTTCAGAAGACGGTTACGTTTATCAACATGCAACTATGGATAAGTTTGCATTGGTTCCACTTCCATGGTTCACCGATGAAAAAGAAACCTCGTTCTTGAGCCGTTGTAAAGAAAGCGGTAACTTGGAGATTATTTATCGTGAAGGAATGGTGCAGTATTTCAGTACTTTGATGGTTGATGTTGGTTTGAAGAATTTGAAGAAGGTTGCACTAGAGGGTCATCATGAAGCCAAATATGTTTACTCTATGCTTTTGATGGCTAACTGTGATGATGAAGAAGGAAGAAAACTTGGGTTTGATCTCTTTGGTGAGTTGAAAAATTCCACAGGCATTACTATTGTGGGGTGTAGAAAAAGGGTGAAATCTTTCATTCAAAGCATGTGGGTGAAGAATGTTGTGGTGGCTCAAAATCAAGGACTCTCTTTGTGTTGTTCTAGCACATGCCACAACCCTGAGACAGAGAAGGTGGTGAAGAAACACTCAACATGGTTCATGGATGAATTTGATAATGATGATGTTGGTGTTTGCAAATATTGCGACGGAAACTATGAATTCATTTTATTTTACCGGTCCGGTTCAGATAGAACTTCCGGGTCACCGGTTCACACCGAGCTGATTGGTTCACACCGAGCTGATTGCATAACCGATCCAAAACTTAGACCGGACCGCTGCAAAGAGTTTCTTAATGCTTCAGAAGACAGTTACGTTTATCAACATGCAACTATGGATAAGTTTGCATTGGTTCCACTTCCATGGTTCACCGATGAAAAAGAAACCTCGTTCTTGAGCCGTTGTAAAGAAAGCGGTAACTTGGAGATTATTTATCGTGAAGGAATGGTGCAGTATTTCAGTACTTTGATGGTTGATGTTGGTTTGAAGAATTTGAAGAAGGCTGCACTAGAGGGTCATCATGAAGCCAAATATGTTTACTCTATGCTTTTGATGGCTAACTGTGATGATGAAGAAGGAAGAAAACTTGGGTTTGATCTCTTTGGTGAGTTGAAAAAATCCATAGGCATTACTATTGTGGGGTGTAGAAAGAGGGTGAAATCTTTTATTCAAAGCATGTGGGTGAAGAATGTTGTGGTGGCTCAAAATCAAGGATTGTCTGTGTTCTTCTAG

Protein sequence

>Msa1217640

MASLRVKKEINKPKIRKNQTPISIVKTLPNDLLVNIVGKVASRSMVDLCKIKLSCKEFLNASEDGYVYQHATMDKFALVPLPWFTDEKETSFLSRCKESGNLEIIYREGMVQYFSTLMVDVGLKNLKKVALEGHHEAKYVYSMLLMANCDDEEGRKLGFDLFGELKNSTGITIVGCRKRVKSFIQSMWVKNVVVAQNQGLSLCCSSTCHNPETEKVVKKHSTWFMDEFDNDDVGVCKYCDGNYEFILFYRSGSDRTSGSPVHTELIGSHRADCITDPKLRPDRCKEFLNASEDSYVYQHATMDKFALVPLPWFTDEKETSFLSRCKESGNLEIIYREGMVQYFSTLMVDVGLKNLKKAALEGHHEAKYVYSMLLMANCDDEEGRKLGFDLFGELKKSIGITIVGCRKRVKSFIQSMWVKNVVVAQNQGLSVFF*