Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1217640 | sp|Q9FXC7|FB79_ARATH | 28.926 | 242 | 155 | 8 | 15 | 245 | 13 | 248 | 1.89e-18 | 88.6 |
Msa1217640 | sp|Q9FXC7|FB79_ARATH | 30.137 | 146 | 91 | 4 | 285 | 425 | 55 | 194 | 5.22e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1217640 | G7JLH1 | 94.048 | 252 | 13 | 2 | 1 | 250 | 1 | 252 | 5.77e-170 | 486 |
Msa1217640 | G7JLH1 | 95.270 | 148 | 7 | 0 | 284 | 431 | 55 | 202 | 8.59e-96 | 297 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1217640 | Msa1270730 | 0.812903 | 3.354342e-51 | -8.615850e-47 |
Msa1217640 | Msa1407600 | 0.817833 | 2.686417e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1217640 | MtrunA17_Chr4g0067321 | 94.048 | 252 | 13 | 2 | 1 | 250 | 1 | 252 | 1.11e-173 | 486 |
Msa1217640 | MtrunA17_Chr4g0067321 | 95.270 | 148 | 7 | 0 | 284 | 431 | 55 | 202 | 1.65e-99 | 297 |
Msa1217640 | MtrunA17_Chr5g0413211 | 78.000 | 250 | 51 | 3 | 1 | 248 | 1 | 248 | 1.14e-136 | 392 |
Msa1217640 | MtrunA17_Chr5g0413211 | 77.852 | 149 | 30 | 2 | 284 | 431 | 55 | 201 | 3.22e-78 | 243 |
Msa1217640 | MtrunA17_Chr3g0116531 | 68.800 | 250 | 70 | 3 | 1 | 248 | 1 | 244 | 1.15e-115 | 338 |
Msa1217640 | MtrunA17_Chr3g0116531 | 73.649 | 148 | 39 | 0 | 284 | 431 | 49 | 196 | 7.00e-74 | 231 |
Msa1217640 | MtrunA17_Chr4g0069031 | 90.566 | 106 | 10 | 0 | 77 | 182 | 6 | 111 | 3.17e-64 | 204 |
Msa1217640 | MtrunA17_Chr4g0069031 | 88.679 | 106 | 12 | 0 | 306 | 411 | 6 | 111 | 1.56e-62 | 200 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1217640 | AT1G74875.1 | 32.317 | 164 | 102 | 4 | 30 | 188 | 17 | 176 | 4.76e-20 | 89.4 |
Msa1217640 | AT1G74875.1 | 34.783 | 138 | 81 | 4 | 285 | 417 | 43 | 176 | 1.01e-18 | 85.5 |
Msa1217640 | AT1G67623.1 | 28.926 | 242 | 155 | 8 | 15 | 245 | 13 | 248 | 1.92e-19 | 88.6 |
Msa1217640 | AT1G67623.1 | 30.137 | 146 | 91 | 4 | 285 | 425 | 55 | 194 | 5.31e-12 | 66.6 |
Msa1217640 | AT2G35280.1 | 33.333 | 138 | 89 | 2 | 18 | 155 | 4 | 138 | 2.34e-13 | 68.2 |
Find 93 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGCATAGAGTAAACATATT+TGG | 0.220285 | 8_1:-80093368 | None:intergenic |
AAGCATAGAGTAAACATATT+TGG | 0.220285 | 8_1:-80095920 | None:intergenic |
AACCGGTCCGGTCTAAGTTT+TGG | 0.276457 | 8_1:-80095174 | None:intergenic |
TTCACCACCTTCTCTGTCTC+AGG | 0.276907 | 8_1:-80093589 | None:intergenic |
AAACTTGGGTTTGATCTCTT+TGG | 0.278212 | 8_1:+80093424 | Msa1217640:CDS |
AAACTTGGGTTTGATCTCTT+TGG | 0.278212 | 8_1:+80095976 | Msa1217640:CDS |
CTATTGTGGGGTGTAGAAAA+AGG | 0.278471 | 8_1:+80093473 | Msa1217640:CDS |
AACTCTTCCAAACGATTTGC+TGG | 0.310452 | 8_1:+80093036 | Msa1217640:CDS |
CGTTTATCAACATGCAACTA+TGG | 0.338892 | 8_1:+80093156 | Msa1217640:CDS |
CGTTTATCAACATGCAACTA+TGG | 0.338892 | 8_1:+80095708 | Msa1217640:CDS |
TCCGGTTCAGATAGAACTTC+CGG | 0.338953 | 8_1:+80095096 | Msa1217640:CDS |
GATTTCTTTCTTGACTCTTA+AGG | 0.371595 | 8_1:-80092966 | None:intergenic |
TTACGATGCTTATGGGTGTT+TGG | 0.388503 | 8_1:-80093012 | None:intergenic |
TCCATAGGCATTACTATTGT+GGG | 0.413887 | 8_1:+80096012 | Msa1217640:CDS |
GCAGTATTTCAGTACTTTGA+TGG | 0.417476 | 8_1:+80093291 | Msa1217640:CDS |
GCAGTATTTCAGTACTTTGA+TGG | 0.417476 | 8_1:+80095843 | Msa1217640:CDS |
GATGAAGAAGGAAGAAAACT+TGG | 0.418628 | 8_1:+80093409 | Msa1217640:CDS |
GATGAAGAAGGAAGAAAACT+TGG | 0.418628 | 8_1:+80095961 | Msa1217640:CDS |
GAAACACTCAACATGGTTCA+TGG | 0.438466 | 8_1:+80093612 | Msa1217640:CDS |
TCCACAGGCATTACTATTGT+GGG | 0.440154 | 8_1:+80093460 | Msa1217640:CDS |
CCTTCTCTGTCTCAGGGTTG+TGG | 0.443318 | 8_1:-80093582 | None:intergenic |
TTGCATTGGTTCCACTTCCA+TGG | 0.446150 | 8_1:+80093185 | Msa1217640:CDS |
TTGCATTGGTTCCACTTCCA+TGG | 0.446150 | 8_1:+80095737 | Msa1217640:CDS |
GAAGGTCGCGTCACGTTCCA+TGG | 0.456912 | 8_1:+80093072 | Msa1217640:CDS |
ATATTAACCAGCAAATCGTT+TGG | 0.462380 | 8_1:-80093043 | None:intergenic |
CTCGGTGTGAACCGGTGACC+CGG | 0.470667 | 8_1:-80095115 | None:intergenic |
CCCGGAAGTTCTATCTGAAC+CGG | 0.471927 | 8_1:-80095097 | None:intergenic |
ATCCATAGGCATTACTATTG+TGG | 0.475858 | 8_1:+80096011 | Msa1217640:CDS |
CCAATCAGCTCGGTGTGAAC+CGG | 0.476663 | 8_1:-80095123 | None:intergenic |
TCACCACCTTCTCTGTCTCA+GGG | 0.476807 | 8_1:-80093588 | None:intergenic |
AACTATGGATAAGTTTGCAT+TGG | 0.477921 | 8_1:+80093171 | Msa1217640:CDS |
AACTATGGATAAGTTTGCAT+TGG | 0.477921 | 8_1:+80095723 | Msa1217640:CDS |
TTGTAAAGAAAGCGGTAACT+TGG | 0.481445 | 8_1:+80093243 | Msa1217640:CDS |
TTGTAAAGAAAGCGGTAACT+TGG | 0.481445 | 8_1:+80095795 | Msa1217640:CDS |
CCGGTTCACACCGAGCTGAT+TGG | 0.490962 | 8_1:+80095123 | Msa1217640:CDS |
CCGGTTCAGATAGAACTTCC+GGG | 0.492196 | 8_1:+80095097 | Msa1217640:CDS |
TTCCACAGGCATTACTATTG+TGG | 0.499049 | 8_1:+80093459 | Msa1217640:CDS |
TCATCGGTGAACCATGGAAG+TGG | 0.502356 | 8_1:-80093196 | None:intergenic |
TCATCGGTGAACCATGGAAG+TGG | 0.502356 | 8_1:-80095748 | None:intergenic |
TTTCTTAATGCTTCAGAAGA+CGG | 0.509925 | 8_1:+80093130 | Msa1217640:CDS |
CCCCACAATAGTAATGCCTA+TGG | 0.510338 | 8_1:-80096013 | None:intergenic |
AACCGGACCCCTAACCGGTC+CGG | 0.512749 | 8_1:-80095186 | None:intergenic |
CTATTGTGGGGTGTAGAAAG+AGG | 0.513714 | 8_1:+80096025 | Msa1217640:CDS |
AGATAGAACTTCCGGGTCAC+CGG | 0.520678 | 8_1:+80095104 | Msa1217640:CDS |
GTTATTGCTTCAGACCGGTC+CGG | 0.520732 | 8_1:+80095078 | Msa1217640:intron |
TTGGAGATTATTTATCGTGA+AGG | 0.526959 | 8_1:+80093262 | Msa1217640:CDS |
TTGGAGATTATTTATCGTGA+AGG | 0.526959 | 8_1:+80095814 | Msa1217640:CDS |
CGATTTGCTGGTTAATATCG+TGG | 0.527060 | 8_1:+80093048 | Msa1217640:CDS |
AATCTTTCATTCAAAGCATG+TGG | 0.527792 | 8_1:+80093500 | Msa1217640:CDS |
GTTGTGGTGGCTCAAAATCA+AGG | 0.528728 | 8_1:+80093532 | Msa1217640:CDS |
AGTACTTTGATGGTTGATGT+TGG | 0.529050 | 8_1:+80093301 | Msa1217640:CDS |
AGTACTTTGATGGTTGATGT+TGG | 0.529050 | 8_1:+80095853 | Msa1217640:CDS |
GTTGTGGTGGCTCAAAATCA+AGG | 0.531210 | 8_1:+80096084 | Msa1217640:CDS |
GAATTTGATAATGATGATGT+TGG | 0.545329 | 8_1:+80093637 | Msa1217640:CDS |
AACCGATCCAAAACTTAGAC+CGG | 0.551629 | 8_1:+80095167 | Msa1217640:CDS |
ATGAAGAAGGAAGAAAACTT+GGG | 0.555650 | 8_1:+80093410 | Msa1217640:CDS |
ATGAAGAAGGAAGAAAACTT+GGG | 0.555650 | 8_1:+80095962 | Msa1217640:CDS |
GATTTGCTGGTTAATATCGT+GGG | 0.560152 | 8_1:+80093049 | Msa1217640:CDS |
TTGAAGAAGGTTGCACTAGA+GGG | 0.560780 | 8_1:+80093334 | Msa1217640:CDS |
TTTGAAGAAGGTTGCACTAG+AGG | 0.562247 | 8_1:+80093333 | Msa1217640:CDS |
TGGTTTGAAGAATTTGAAGA+AGG | 0.573775 | 8_1:+80095873 | Msa1217640:CDS |
GCTGGTTAATATCGTGGGGA+AGG | 0.574024 | 8_1:+80093054 | Msa1217640:CDS |
GATTATTTATCGTGAAGGAA+TGG | 0.575748 | 8_1:+80093267 | Msa1217640:CDS |
GATTATTTATCGTGAAGGAA+TGG | 0.575748 | 8_1:+80095819 | Msa1217640:CDS |
TTTGAAGAAGGCTGCACTAG+AGG | 0.578023 | 8_1:+80095885 | Msa1217640:CDS |
TTGAAGAAGGCTGCACTAGA+GGG | 0.579675 | 8_1:+80095886 | Msa1217640:CDS |
TGGTTTGAAGAATTTGAAGA+AGG | 0.582243 | 8_1:+80093321 | Msa1217640:CDS |
TATTGTGGGGTGTAGAAAGA+GGG | 0.594191 | 8_1:+80096026 | Msa1217640:CDS |
ATCTTTCATTCAAAGCATGT+GGG | 0.595971 | 8_1:+80093501 | Msa1217640:CDS |
AAGTTCTATCTGAACCGGAC+CGG | 0.604667 | 8_1:-80095092 | None:intergenic |
TTGAGCCGTTGTAAAGAAAG+CGG | 0.605024 | 8_1:+80093235 | Msa1217640:CDS |
TTGAGCCGTTGTAAAGAAAG+CGG | 0.605024 | 8_1:+80095787 | Msa1217640:CDS |
AGTTACCGCTTTCTTTACAA+CGG | 0.624471 | 8_1:-80093240 | None:intergenic |
AGTTACCGCTTTCTTTACAA+CGG | 0.624471 | 8_1:-80095792 | None:intergenic |
ATCCAAAACTTAGACCGGAC+CGG | 0.624999 | 8_1:+80095172 | Msa1217640:CDS |
GCTAACTGTGATGATGAAGA+AGG | 0.625353 | 8_1:+80093397 | Msa1217640:CDS |
GCTAACTGTGATGATGAAGA+AGG | 0.625353 | 8_1:+80095949 | Msa1217640:CDS |
GTGGGTGAAGAATGTTGTGG+TGG | 0.626873 | 8_1:+80093519 | Msa1217640:CDS |
GTGGGTGAAGAATGTTGTGG+TGG | 0.626873 | 8_1:+80096071 | Msa1217640:CDS |
GATCGGTTATGCAATCAGCT+CGG | 0.633184 | 8_1:-80095152 | None:intergenic |
CAACCCTGAGACAGAGAAGG+TGG | 0.639230 | 8_1:+80093585 | Msa1217640:CDS |
ATTTGCTGGTTAATATCGTG+GGG | 0.649428 | 8_1:+80093050 | Msa1217640:CDS |
CCACAGGCATTACTATTGTG+GGG | 0.651049 | 8_1:+80093461 | Msa1217640:CDS |
TTTACAACGGCTCAAGAACG+AGG | 0.653563 | 8_1:-80093227 | None:intergenic |
TTTACAACGGCTCAAGAACG+AGG | 0.653563 | 8_1:-80095779 | None:intergenic |
CCACAACCCTGAGACAGAGA+AGG | 0.656673 | 8_1:+80093582 | Msa1217640:CDS |
TCGGTGTGAACCAATCAGCT+CGG | 0.663639 | 8_1:-80095133 | None:intergenic |
CCATAGGCATTACTATTGTG+GGG | 0.663948 | 8_1:+80096013 | Msa1217640:CDS |
GGTGTTTGCAAATATTGCGA+CGG | 0.668808 | 8_1:+80093658 | Msa1217640:CDS |
CCCCACAATAGTAATGCCTG+TGG | 0.671676 | 8_1:-80093461 | None:intergenic |
TGGTGAAGAAACACTCAACA+TGG | 0.674981 | 8_1:+80093605 | Msa1217640:CDS |
CATGTGGGTGAAGAATGTTG+TGG | 0.829903 | 8_1:+80093516 | Msa1217640:CDS |
CATGTGGGTGAAGAATGTTG+TGG | 0.829903 | 8_1:+80096068 | Msa1217640:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATTTTGTAAGATGTTT+CGG | + | chr8_1:80093695-80093714 | Msa1217640:intron | 15.0% |
!! | TGTTTAGATTAAATTTGTAT+AGG | + | chr8_1:80094565-80094584 | Msa1217640:intron | 15.0% |
!!! | TGTGTTATTATTTTAGTTTT+TGG | - | chr8_1:80094635-80094654 | None:intergenic | 15.0% |
!!! | TAAACATCATTTCATATTTT+CGG | - | chr8_1:80094870-80094889 | None:intergenic | 15.0% |
!! | AGTTATAATAACATATGTTT+GGG | - | chr8_1:80094893-80094912 | None:intergenic | 15.0% |
!! | TAGTTATAATAACATATGTT+TGG | - | chr8_1:80094894-80094913 | None:intergenic | 15.0% |
!!! | TTTATTTTGTAAGATGTTTC+GGG | + | chr8_1:80093696-80093715 | Msa1217640:intron | 20.0% |
!! | TAACTTGAATAAAAAACACA+GGG | - | chr8_1:80093929-80093948 | None:intergenic | 20.0% |
!! | TCCATAATTATATTTGTTTG+TGG | + | chr8_1:80093970-80093989 | Msa1217640:intron | 20.0% |
!! | ACCACAAACAAATATAATTA+TGG | - | chr8_1:80093974-80093993 | None:intergenic | 20.0% |
!!! | TTTTTTTGAGAGAAAATAGA+AGG | - | chr8_1:80094120-80094139 | None:intergenic | 20.0% |
!!! | AATGTATTTTCGAAACATTA+AGG | - | chr8_1:80094312-80094331 | None:intergenic | 20.0% |
!!! | AAATACATTTTTCATGTGAT+TGG | + | chr8_1:80094323-80094342 | Msa1217640:intron | 20.0% |
!! | TACAAATTTAATCTAAACAC+CGG | - | chr8_1:80094564-80094583 | None:intergenic | 20.0% |
!! | ATTTGTATAGGTATTTAATC+AGG | + | chr8_1:80094577-80094596 | Msa1217640:intron | 20.0% |
!! | ATTGAATATGCTGTAAAAAA+TGG | - | chr8_1:80095050-80095069 | None:intergenic | 20.0% |
! | AAGCATAGAGTAAACATATT+TGG | - | chr8_1:80093371-80093390 | None:intergenic | 25.0% |
!!! | GAATTTGATAATGATGATGT+TGG | + | chr8_1:80093637-80093656 | Msa1217640:CDS | 25.0% |
! | AGAAACTCAAAAATTGAAGT+TGG | + | chr8_1:80093868-80093887 | Msa1217640:intron | 25.0% |
! | GTAACTTGAATAAAAAACAC+AGG | - | chr8_1:80093930-80093949 | None:intergenic | 25.0% |
! | AAGTATAGAAACGTAAACTA+TGG | + | chr8_1:80094037-80094056 | Msa1217640:intron | 25.0% |
!!! | AATCATTCGTATTGCTTTTT+TGG | + | chr8_1:80094203-80094222 | Msa1217640:intron | 25.0% |
!!! | ATCATTCGTATTGCTTTTTT+GGG | + | chr8_1:80094204-80094223 | Msa1217640:intron | 25.0% |
!!! | GAGACCATAATTTTAAAACT+CGG | + | chr8_1:80094423-80094442 | Msa1217640:intron | 25.0% |
! | ACAAATTTAATCTAAACACC+GGG | - | chr8_1:80094563-80094582 | None:intergenic | 25.0% |
! | GGTATTTAATCAGGTTAAAT+CGG | + | chr8_1:80094586-80094605 | Msa1217640:intron | 25.0% |
! | GTCTATGAAATTATGTTTGT+TGG | - | chr8_1:80094675-80094694 | None:intergenic | 25.0% |
!!! | ATATGTGAAGTTTTATCAGA+CGG | + | chr8_1:80094805-80094824 | Msa1217640:intron | 25.0% |
! | AAAAACAATTTGTGCTTTAG+TGG | + | chr8_1:80094935-80094954 | Msa1217640:intron | 25.0% |
! | AACGAATATGCTGTAAAAAA+TGG | - | chr8_1:80095012-80095031 | None:intergenic | 25.0% |
! | TTTCTTAATGTTTCAGAAGA+CGG | + | chr8_1:80095327-80095346 | Msa1217640:intron | 25.0% |
! | AAGCATAGAGTAAACATATT+TGG | - | chr8_1:80093371-80093390 | None:intergenic | 25.0% |
!! | AATCTTTTATTCAAAGCATG+TGG | + | chr8_1:80096052-80096071 | Msa1217640:CDS | 25.0% |
!! | ATCTTTTATTCAAAGCATGT+GGG | + | chr8_1:80096053-80096072 | Msa1217640:CDS | 25.0% |
GATTTCTTTCTTGACTCTTA+AGG | - | chr8_1:80092969-80092988 | None:intergenic | 30.0% | |
! | AGAGTTTTTACGATGCTTAT+GGG | - | chr8_1:80093022-80093041 | None:intergenic | 30.0% |
! | AAGAGTTTTTACGATGCTTA+TGG | - | chr8_1:80093023-80093042 | None:intergenic | 30.0% |
ATATTAACCAGCAAATCGTT+TGG | - | chr8_1:80093046-80093065 | None:intergenic | 30.0% | |
TTTCTTAATGCTTCAGAAGA+CGG | + | chr8_1:80093130-80093149 | Msa1217640:CDS | 30.0% | |
AACTATGGATAAGTTTGCAT+TGG | + | chr8_1:80093171-80093190 | Msa1217640:CDS | 30.0% | |
TTGGAGATTATTTATCGTGA+AGG | + | chr8_1:80093262-80093281 | Msa1217640:CDS | 30.0% | |
GATTATTTATCGTGAAGGAA+TGG | + | chr8_1:80093267-80093286 | Msa1217640:CDS | 30.0% | |
TGGTTTGAAGAATTTGAAGA+AGG | + | chr8_1:80093321-80093340 | Msa1217640:CDS | 30.0% | |
! | TGTTTACTCTATGCTTTTGA+TGG | + | chr8_1:80093375-80093394 | Msa1217640:CDS | 30.0% |
ATGAAGAAGGAAGAAAACTT+GGG | + | chr8_1:80093410-80093429 | Msa1217640:CDS | 30.0% | |
AATCTTTCATTCAAAGCATG+TGG | + | chr8_1:80093500-80093519 | Msa1217640:CDS | 30.0% | |
ATCTTTCATTCAAAGCATGT+GGG | + | chr8_1:80093501-80093520 | Msa1217640:CDS | 30.0% | |
ATAGGAAAAAGCCTAAAAAC+AGG | + | chr8_1:80093768-80093787 | Msa1217640:intron | 30.0% | |
TCTATACTTCATGATAATCG+TGG | - | chr8_1:80094026-80094045 | None:intergenic | 30.0% | |
TACTCTGAATCATGAAAAGT+TGG | - | chr8_1:80094069-80094088 | None:intergenic | 30.0% | |
TGAGAGAAAATAGAAGGATT+TGG | - | chr8_1:80094114-80094133 | None:intergenic | 30.0% | |
!!! | CATAATTTTAAAACTCGGCT+CGG | + | chr8_1:80094428-80094447 | Msa1217640:intron | 30.0% |
!! | TATGTGAAGTTTTATCAGAC+GGG | + | chr8_1:80094806-80094825 | Msa1217640:intron | 30.0% |
AGACGGGAAAAAAAATTTGA+TGG | + | chr8_1:80094822-80094841 | Msa1217640:intron | 30.0% | |
!! | CTGTAAAAAATGGCTTTAGT+GGG | - | chr8_1:80095002-80095021 | None:intergenic | 30.0% |
!! | AATTTGTTATTGCTTCAGAC+CGG | + | chr8_1:80095073-80095092 | Msa1217640:intron | 30.0% |
AACTATGGATAAGTTTGCAT+TGG | + | chr8_1:80093171-80093190 | Msa1217640:CDS | 30.0% | |
TTTCTTAATGCTTCAGAAGA+CGG | + | chr8_1:80093130-80093149 | Msa1217640:CDS | 30.0% | |
AACTATGGATAAGTTTGCAT+TGG | + | chr8_1:80093171-80093190 | Msa1217640:CDS | 30.0% | |
AACTATGGATAAGTTTGCAT+TGG | + | chr8_1:80093171-80093190 | Msa1217640:CDS | 30.0% | |
TTGGAGATTATTTATCGTGA+AGG | + | chr8_1:80093262-80093281 | Msa1217640:CDS | 30.0% | |
GATTATTTATCGTGAAGGAA+TGG | + | chr8_1:80093267-80093286 | Msa1217640:CDS | 30.0% | |
TGGTTTGAAGAATTTGAAGA+AGG | + | chr8_1:80093321-80093340 | Msa1217640:CDS | 30.0% | |
! | TGTTTACTCTATGCTTTTGA+TGG | + | chr8_1:80093375-80093394 | Msa1217640:CDS | 30.0% |
ATGAAGAAGGAAGAAAACTT+GGG | + | chr8_1:80093410-80093429 | Msa1217640:CDS | 30.0% | |
!!! | GTTTGGTTTTTGCGGATTTT+AGG | - | chr8_1:80092998-80093017 | None:intergenic | 35.0% |
!!! | TTATGGGTGTTTGGTTTTTG+CGG | - | chr8_1:80093006-80093025 | None:intergenic | 35.0% |
!! | GATTTGCTGGTTAATATCGT+GGG | + | chr8_1:80093049-80093068 | Msa1217640:CDS | 35.0% |
! | ATTTGCTGGTTAATATCGTG+GGG | + | chr8_1:80093050-80093069 | Msa1217640:CDS | 35.0% |
! | GATTTTGCAAAGATCAACCA+TGG | - | chr8_1:80093092-80093111 | None:intergenic | 35.0% |
CGTTTATCAACATGCAACTA+TGG | + | chr8_1:80093156-80093175 | Msa1217640:CDS | 35.0% | |
!! | GAACGAGGTTTCTTTTTCAT+CGG | - | chr8_1:80093215-80093234 | None:intergenic | 35.0% |
AGTTACCGCTTTCTTTACAA+CGG | - | chr8_1:80093243-80093262 | None:intergenic | 35.0% | |
TTGTAAAGAAAGCGGTAACT+TGG | + | chr8_1:80093243-80093262 | Msa1217640:CDS | 35.0% | |
GCAGTATTTCAGTACTTTGA+TGG | + | chr8_1:80093291-80093310 | Msa1217640:CDS | 35.0% | |
! | AGTACTTTGATGGTTGATGT+TGG | + | chr8_1:80093301-80093320 | Msa1217640:CDS | 35.0% |
GATGAAGAAGGAAGAAAACT+TGG | + | chr8_1:80093409-80093428 | Msa1217640:CDS | 35.0% | |
AAACTTGGGTTTGATCTCTT+TGG | + | chr8_1:80093424-80093443 | Msa1217640:CDS | 35.0% | |
TATTGTGGGGTGTAGAAAAA+GGG | + | chr8_1:80093474-80093493 | Msa1217640:CDS | 35.0% | |
TCGGGTATAACTATGTAAAC+TGG | + | chr8_1:80093714-80093733 | Msa1217640:intron | 35.0% | |
TAGTACGTTAGCATGAGAAT+AGG | + | chr8_1:80093750-80093769 | Msa1217640:intron | 35.0% | |
!! | CTTGAACTAAGCCTGTTTTT+AGG | - | chr8_1:80093782-80093801 | None:intergenic | 35.0% |
! | CATGTGATTGGTTAAAGTGA+AGG | + | chr8_1:80094335-80094354 | Msa1217640:intron | 35.0% |
ATTCATGTGAAAGTGAAGCT+TGG | + | chr8_1:80094365-80094384 | Msa1217640:intron | 35.0% | |
AAAATTATGGTCTCGTGCAT+TGG | - | chr8_1:80094417-80094436 | None:intergenic | 35.0% | |
!!! | CGAGCCGAGTTTTAAAATTA+TGG | - | chr8_1:80094430-80094449 | None:intergenic | 35.0% |
ATGACTGAATCGGATCAAAT+CGG | + | chr8_1:80094520-80094539 | Msa1217640:intron | 35.0% | |
ACAATTTGTGCTTTAGTGGT+TGG | + | chr8_1:80094939-80094958 | Msa1217640:intron | 35.0% | |
CAATTTGTGCTTTAGTGGTT+GGG | + | chr8_1:80094940-80094959 | Msa1217640:intron | 35.0% | |
!!! | TGGGAGCGTTTTCTATAATA+AGG | + | chr8_1:80094959-80094978 | Msa1217640:intron | 35.0% |
!!! | GGGAGCGTTTTCTATAATAA+GGG | + | chr8_1:80094960-80094979 | Msa1217640:intron | 35.0% |
!! | GGAGCGTTTTCTATAATAAG+GGG | + | chr8_1:80094961-80094980 | Msa1217640:intron | 35.0% |
! | GAGCGTTTTCTATAATAAGG+GGG | + | chr8_1:80094962-80094981 | Msa1217640:intron | 35.0% |
!! | GCTGTAAAAAATGGCTTTAG+TGG | - | chr8_1:80095003-80095022 | None:intergenic | 35.0% |
!! | CTGTAAAAAATGGCTTTAGC+GGG | - | chr8_1:80095040-80095059 | None:intergenic | 35.0% |
!! | GCTGTAAAAAATGGCTTTAG+CGG | - | chr8_1:80095003-80095022 | None:intergenic | 35.0% |
TAACCAGCAAGCAAATTTCT+CGG | - | chr8_1:80095241-80095260 | None:intergenic | 35.0% | |
! | TTGCTTGCTGGTTAATATAG+TGG | + | chr8_1:80095247-80095266 | Msa1217640:intron | 35.0% |
! | TGCTTGCTGGTTAATATAGT+GGG | + | chr8_1:80095248-80095267 | Msa1217640:intron | 35.0% |
! | GATTTTGCAAAGATCAACCA+TGG | - | chr8_1:80093092-80093111 | None:intergenic | 35.0% |
CGTTTATCAACATGCAACTA+TGG | + | chr8_1:80093156-80093175 | Msa1217640:CDS | 35.0% | |
!! | TCTTTTTCATCGATGAACCA+TGG | - | chr8_1:80095411-80095430 | None:intergenic | 35.0% |
AGTTACCGCTTTCTTTACAA+CGG | - | chr8_1:80093243-80093262 | None:intergenic | 35.0% | |
TTGTAAAGAAAGCGGTAACT+TGG | + | chr8_1:80093243-80093262 | Msa1217640:CDS | 35.0% | |
CGTTTATCAACATGCAACTA+TGG | + | chr8_1:80093156-80093175 | Msa1217640:CDS | 35.0% | |
!! | TCTTTTTCATCGATGAACCA+TGG | - | chr8_1:80095411-80095430 | None:intergenic | 35.0% |
AGTTACCGCTTTCTTTACAA+CGG | - | chr8_1:80093243-80093262 | None:intergenic | 35.0% | |
TTGTAAAGAAAGCGGTAACT+TGG | + | chr8_1:80093243-80093262 | Msa1217640:CDS | 35.0% | |
CGTTTATCAACATGCAACTA+TGG | + | chr8_1:80093156-80093175 | Msa1217640:CDS | 35.0% | |
!! | GAACGAGGTTTCTTTTTCAT+CGG | - | chr8_1:80093215-80093234 | None:intergenic | 35.0% |
AGTTACCGCTTTCTTTACAA+CGG | - | chr8_1:80093243-80093262 | None:intergenic | 35.0% | |
TTGTAAAGAAAGCGGTAACT+TGG | + | chr8_1:80093243-80093262 | Msa1217640:CDS | 35.0% | |
GCAGTATTTCAGTACTTTGA+TGG | + | chr8_1:80093291-80093310 | Msa1217640:CDS | 35.0% | |
! | AGTACTTTGATGGTTGATGT+TGG | + | chr8_1:80093301-80093320 | Msa1217640:CDS | 35.0% |
GATGAAGAAGGAAGAAAACT+TGG | + | chr8_1:80093409-80093428 | Msa1217640:CDS | 35.0% | |
AAACTTGGGTTTGATCTCTT+TGG | + | chr8_1:80093424-80093443 | Msa1217640:CDS | 35.0% | |
! | GGTGAGTTGAAAAAATCCAT+AGG | + | chr8_1:80095997-80096016 | Msa1217640:CDS | 35.0% |
ATCCATAGGCATTACTATTG+TGG | + | chr8_1:80096011-80096030 | Msa1217640:CDS | 35.0% | |
TCCATAGGCATTACTATTGT+GGG | + | chr8_1:80096012-80096031 | Msa1217640:CDS | 35.0% | |
TTACGATGCTTATGGGTGTT+TGG | - | chr8_1:80093015-80093034 | None:intergenic | 40.0% | |
AACTCTTCCAAACGATTTGC+TGG | + | chr8_1:80093036-80093055 | Msa1217640:CDS | 40.0% | |
!! | CGATTTGCTGGTTAATATCG+TGG | + | chr8_1:80093048-80093067 | Msa1217640:CDS | 40.0% |
!! | TCTTTTTCATCGGTGAACCA+TGG | - | chr8_1:80093205-80093224 | None:intergenic | 40.0% |
TTGAGCCGTTGTAAAGAAAG+CGG | + | chr8_1:80093235-80093254 | Msa1217640:CDS | 40.0% | |
TTTGAAGAAGGTTGCACTAG+AGG | + | chr8_1:80093333-80093352 | Msa1217640:CDS | 40.0% | |
TTGAAGAAGGTTGCACTAGA+GGG | + | chr8_1:80093334-80093353 | Msa1217640:CDS | 40.0% | |
! | GCTAACTGTGATGATGAAGA+AGG | + | chr8_1:80093397-80093416 | Msa1217640:CDS | 40.0% |
! | GGTGAGTTGAAAAATTCCAC+AGG | + | chr8_1:80093445-80093464 | Msa1217640:CDS | 40.0% |
TTCCACAGGCATTACTATTG+TGG | + | chr8_1:80093459-80093478 | Msa1217640:CDS | 40.0% | |
TCCACAGGCATTACTATTGT+GGG | + | chr8_1:80093460-80093479 | Msa1217640:CDS | 40.0% | |
CTATTGTGGGGTGTAGAAAA+AGG | + | chr8_1:80093473-80093492 | Msa1217640:CDS | 40.0% | |
TGGTGAAGAAACACTCAACA+TGG | + | chr8_1:80093605-80093624 | Msa1217640:CDS | 40.0% | |
GAAACACTCAACATGGTTCA+TGG | + | chr8_1:80093612-80093631 | Msa1217640:CDS | 40.0% | |
GGTGTTTGCAAATATTGCGA+CGG | + | chr8_1:80093658-80093677 | Msa1217640:CDS | 40.0% | |
TCGTGGAGAATTAACAGAGA+GGG | - | chr8_1:80094009-80094028 | None:intergenic | 40.0% | |
ATCGTGGAGAATTAACAGAG+AGG | - | chr8_1:80094010-80094029 | None:intergenic | 40.0% | |
CACGCAATCTCAGAAATTGA+AGG | - | chr8_1:80094155-80094174 | None:intergenic | 40.0% | |
TGTGAAAGTGAAGCTTGGTT+TGG | + | chr8_1:80094370-80094389 | Msa1217640:intron | 40.0% | |
TTTGATCCGATTCAGTCATG+CGG | - | chr8_1:80094519-80094538 | None:intergenic | 40.0% | |
CAGGTTAAATCGGATTGAAC+CGG | + | chr8_1:80094596-80094615 | Msa1217640:intron | 40.0% | |
AACCGATCCAAAACTTAGAC+CGG | + | chr8_1:80095167-80095186 | Msa1217640:CDS | 40.0% | |
! | GCTTGCTGGTTAATATAGTG+GGG | + | chr8_1:80095249-80095268 | Msa1217640:intron | 40.0% |
TTGAGCCGTTGTAAAGAAAG+CGG | + | chr8_1:80093235-80093254 | Msa1217640:CDS | 40.0% | |
TTGAGCCGTTGTAAAGAAAG+CGG | + | chr8_1:80093235-80093254 | Msa1217640:CDS | 40.0% | |
!! | TCTTTTTCATCGGTGAACCA+TGG | - | chr8_1:80093205-80093224 | None:intergenic | 40.0% |
TTGAGCCGTTGTAAAGAAAG+CGG | + | chr8_1:80093235-80093254 | Msa1217640:CDS | 40.0% | |
! | GCTAACTGTGATGATGAAGA+AGG | + | chr8_1:80093397-80093416 | Msa1217640:CDS | 40.0% |
CCATAGGCATTACTATTGTG+GGG | + | chr8_1:80096013-80096032 | Msa1217640:CDS | 40.0% | |
TATTGTGGGGTGTAGAAAGA+GGG | + | chr8_1:80096026-80096045 | Msa1217640:CDS | 40.0% | |
!! | TTGCATTGGTTCCACTTCCA+TGG | + | chr8_1:80093185-80093204 | Msa1217640:CDS | 45.0% |
TTTACAACGGCTCAAGAACG+AGG | - | chr8_1:80093230-80093249 | None:intergenic | 45.0% | |
CCACAGGCATTACTATTGTG+GGG | + | chr8_1:80093461-80093480 | Msa1217640:CDS | 45.0% | |
CATGTGGGTGAAGAATGTTG+TGG | + | chr8_1:80093516-80093535 | Msa1217640:CDS | 45.0% | |
GTTGTGGTGGCTCAAAATCA+AGG | + | chr8_1:80093532-80093551 | Msa1217640:CDS | 45.0% | |
GTTGAACCGCATGACTGAAT+CGG | + | chr8_1:80094510-80094529 | Msa1217640:intron | 45.0% | |
TCGGATCAAATCGGATGACT+CGG | + | chr8_1:80094529-80094548 | Msa1217640:intron | 45.0% | |
!! | GATGACTCGGTAAGATAACC+CGG | + | chr8_1:80094542-80094561 | Msa1217640:intron | 45.0% |
AAGTTCTATCTGAACCGGAC+CGG | - | chr8_1:80095095-80095114 | None:intergenic | 45.0% | |
TCCGGTTCAGATAGAACTTC+CGG | + | chr8_1:80095096-80095115 | Msa1217640:CDS | 45.0% | |
GATCGGTTATGCAATCAGCT+CGG | - | chr8_1:80095155-80095174 | None:intergenic | 45.0% | |
!!! | GTCCGGTCTAAGTTTTGGAT+CGG | - | chr8_1:80095172-80095191 | None:intergenic | 45.0% |
ATCCAAAACTTAGACCGGAC+CGG | + | chr8_1:80095172-80095191 | Msa1217640:CDS | 45.0% | |
AGCAAGCAAATTTCTCGGAC+CGG | - | chr8_1:80095236-80095255 | None:intergenic | 45.0% | |
! | GCTGGTTAATATAGTGGGGA+AGG | + | chr8_1:80095253-80095272 | Msa1217640:intron | 45.0% |
!! | TTGCATTGGTTCCACTTCCA+TGG | + | chr8_1:80093185-80093204 | Msa1217640:CDS | 45.0% |
TCATCGATGAACCATGGAAG+TGG | - | chr8_1:80095405-80095424 | None:intergenic | 45.0% | |
TTTACAACGGCTCAAGAACG+AGG | - | chr8_1:80093230-80093249 | None:intergenic | 45.0% | |
!! | TTGCATTGGTTCCACTTCCA+TGG | + | chr8_1:80093185-80093204 | Msa1217640:CDS | 45.0% |
TCATCGATGAACCATGGAAG+TGG | - | chr8_1:80095405-80095424 | None:intergenic | 45.0% | |
TTTACAACGGCTCAAGAACG+AGG | - | chr8_1:80093230-80093249 | None:intergenic | 45.0% | |
!! | TTGCATTGGTTCCACTTCCA+TGG | + | chr8_1:80093185-80093204 | Msa1217640:CDS | 45.0% |
TTTACAACGGCTCAAGAACG+AGG | - | chr8_1:80093230-80093249 | None:intergenic | 45.0% | |
TTTGAAGAAGGCTGCACTAG+AGG | + | chr8_1:80095885-80095904 | Msa1217640:CDS | 45.0% | |
TTGAAGAAGGCTGCACTAGA+GGG | + | chr8_1:80095886-80095905 | Msa1217640:CDS | 45.0% | |
CCCCACAATAGTAATGCCTA+TGG | - | chr8_1:80096016-80096035 | None:intergenic | 45.0% | |
CTATTGTGGGGTGTAGAAAG+AGG | + | chr8_1:80096025-80096044 | Msa1217640:CDS | 45.0% | |
CATGTGGGTGAAGAATGTTG+TGG | + | chr8_1:80093516-80093535 | Msa1217640:CDS | 45.0% | |
GTTGTGGTGGCTCAAAATCA+AGG | + | chr8_1:80093532-80093551 | Msa1217640:CDS | 45.0% | |
GCTGGTTAATATCGTGGGGA+AGG | + | chr8_1:80093054-80093073 | Msa1217640:CDS | 50.0% | |
TCATCGGTGAACCATGGAAG+TGG | - | chr8_1:80093199-80093218 | None:intergenic | 50.0% | |
CCCCACAATAGTAATGCCTG+TGG | - | chr8_1:80093464-80093483 | None:intergenic | 50.0% | |
GTGGGTGAAGAATGTTGTGG+TGG | + | chr8_1:80093519-80093538 | Msa1217640:CDS | 50.0% | |
TCACCACCTTCTCTGTCTCA+GGG | - | chr8_1:80093591-80093610 | None:intergenic | 50.0% | |
TTCACCACCTTCTCTGTCTC+AGG | - | chr8_1:80093592-80093611 | None:intergenic | 50.0% | |
!! | ATCGACTCGGCATAGGTACT+GGG | + | chr8_1:80094453-80094472 | Msa1217640:intron | 50.0% |
ATCGGATTGAACCGGTGACT+CGG | + | chr8_1:80094604-80094623 | Msa1217640:intron | 50.0% | |
!!! | TTTTGGAGTGACCGAGTCAC+CGG | - | chr8_1:80094618-80094637 | None:intergenic | 50.0% |
GTTATTGCTTCAGACCGGTC+CGG | + | chr8_1:80095078-80095097 | Msa1217640:intron | 50.0% | |
CCCGGAAGTTCTATCTGAAC+CGG | - | chr8_1:80095100-80095119 | None:intergenic | 50.0% | |
CCGGTTCAGATAGAACTTCC+GGG | + | chr8_1:80095097-80095116 | Msa1217640:CDS | 50.0% | |
AGATAGAACTTCCGGGTCAC+CGG | + | chr8_1:80095104-80095123 | Msa1217640:CDS | 50.0% | |
TCGGTGTGAACCAATCAGCT+CGG | - | chr8_1:80095136-80095155 | None:intergenic | 50.0% | |
! | AACCGGTCCGGTCTAAGTTT+TGG | - | chr8_1:80095177-80095196 | None:intergenic | 50.0% |
AAACTTAGACCGGACCGGTT+AGG | + | chr8_1:80095177-80095196 | Msa1217640:intron | 50.0% | |
AACTTAGACCGGACCGGTTA+GGG | + | chr8_1:80095178-80095197 | Msa1217640:intron | 50.0% | |
! | GGTCCGAGAAATTTGCTTGC+TGG | + | chr8_1:80095235-80095254 | Msa1217640:intron | 50.0% |
TCATCGGTGAACCATGGAAG+TGG | - | chr8_1:80093199-80093218 | None:intergenic | 50.0% | |
GTGGGTGAAGAATGTTGTGG+TGG | + | chr8_1:80093519-80093538 | Msa1217640:CDS | 50.0% | |
CCTTCTCTGTCTCAGGGTTG+TGG | - | chr8_1:80093585-80093604 | None:intergenic | 55.0% | |
CCACAACCCTGAGACAGAGA+AGG | + | chr8_1:80093582-80093601 | Msa1217640:CDS | 55.0% | |
CAACCCTGAGACAGAGAAGG+TGG | + | chr8_1:80093585-80093604 | Msa1217640:CDS | 55.0% | |
!! | CATCGACTCGGCATAGGTAC+TGG | + | chr8_1:80094452-80094471 | Msa1217640:intron | 55.0% |
GTACTGGGTCACTGAGTCGA+TGG | + | chr8_1:80094468-80094487 | Msa1217640:intron | 55.0% | |
TGGTCGAACCATCGAGTCAC+TGG | + | chr8_1:80094488-80094507 | Msa1217640:intron | 55.0% | |
CGGTTCAACCAGTGACTCGA+TGG | - | chr8_1:80094499-80094518 | None:intergenic | 55.0% | |
!! | CCAATCAGCTCGGTGTGAAC+CGG | - | chr8_1:80095126-80095145 | None:intergenic | 55.0% |
ACTTAGACCGGACCGGTTAG+GGG | + | chr8_1:80095179-80095198 | Msa1217640:intron | 55.0% | |
GAAGGTCGCGTCACGTTCCA+TGG | + | chr8_1:80093072-80093091 | Msa1217640:CDS | 60.0% | |
!! | ACTCGGCTCGGTCATCGACT+CGG | + | chr8_1:80094440-80094459 | Msa1217640:intron | 60.0% |
!! | CTCGGTCATCGACTCGGCAT+AGG | + | chr8_1:80094446-80094465 | Msa1217640:intron | 60.0% |
CCGGTTCACACCGAGCTGAT+TGG | + | chr8_1:80095123-80095142 | Msa1217640:CDS | 60.0% | |
CGCTCGGTTGAACCGTGAAC+CGG | - | chr8_1:80095206-80095225 | None:intergenic | 60.0% | |
CGGTTCACGGTTCAACCGAG+CGG | + | chr8_1:80095204-80095223 | Msa1217640:intron | 60.0% | |
TTCAACCGAGCGGTCTGGTC+CGG | + | chr8_1:80095214-80095233 | Msa1217640:intron | 60.0% | |
! | CTCGGTGTGAACCGGTGACC+CGG | - | chr8_1:80095118-80095137 | None:intergenic | 65.0% |
AACCGGACCCCTAACCGGTC+CGG | - | chr8_1:80095189-80095208 | None:intergenic | 65.0% | |
CCGTGAACCGGACCCCTAAC+CGG | - | chr8_1:80095194-80095213 | None:intergenic | 65.0% | |
CCGGTTAGGGGTCCGGTTCA+CGG | + | chr8_1:80095191-80095210 | Msa1217640:intron | 65.0% | |
CACGGTTCAACCGAGCGGTC+TGG | + | chr8_1:80095209-80095228 | Msa1217640:intron | 65.0% | |
! | GGAAGGCGCGTCACGTTCCA+TGG | + | chr8_1:80095270-80095289 | Msa1217640:intron | 65.0% |
GACCGGACCGGTTAGGGGTC+CGG | + | chr8_1:80095184-80095203 | Msa1217640:intron | 70.0% | |
TCGGACCGGACCAGACCGCT+CGG | - | chr8_1:80095222-80095241 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 80092959 | 80096125 | 80092959 | ID=Msa1217640;Name=Msa1217640 |
chr8_1 | mRNA | 80092959 | 80096125 | 80092959 | ID=Msa1217640-mRNA-1;Parent=Msa1217640;Name=Msa1217640-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.66|1|1|3|0|433 |
chr8_1 | exon | 80092959 | 80093703 | 80092959 | ID=Msa1217640-mRNA-1:exon:28004;Parent=Msa1217640-mRNA-1 |
chr8_1 | exon | 80095091 | 80095193 | 80095091 | ID=Msa1217640-mRNA-1:exon:28005;Parent=Msa1217640-mRNA-1 |
chr8_1 | exon | 80095672 | 80096125 | 80095672 | ID=Msa1217640-mRNA-1:exon:28006;Parent=Msa1217640-mRNA-1 |
chr8_1 | CDS | 80092959 | 80093703 | 80092959 | ID=Msa1217640-mRNA-1:cds;Parent=Msa1217640-mRNA-1 |
chr8_1 | CDS | 80095091 | 80095193 | 80095091 | ID=Msa1217640-mRNA-1:cds;Parent=Msa1217640-mRNA-1 |
chr8_1 | CDS | 80095672 | 80096125 | 80095672 | ID=Msa1217640-mRNA-1:cds;Parent=Msa1217640-mRNA-1 |
Gene Sequence |
Protein sequence |