AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1217790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217790 MtrunA17_Chr4g0067291 92.077 366 21 2 1 366 1 358 0.0 670
Msa1217790 MtrunA17_Chr2g0296001 49.451 364 145 12 22 366 10 353 5.98e-78 243
Msa1217790 MtrunA17_Chr5g0421601 82.895 76 11 1 291 366 43 116 3.39e-39 137
Msa1217790 MtrunA17_Chr7g0269081 60.870 69 27 0 69 137 17 85 4.26e-23 98.2
Msa1217790 MtrunA17_Chr2g0287751 64.179 67 24 0 71 137 7 73 1.09e-21 96.3
Msa1217790 MtrunA17_Chr0c22g0493881 64.179 67 24 0 71 137 7 73 1.75e-21 94.4
Msa1217790 MtrunA17_Chr4g0065651 64.179 67 24 0 71 137 7 73 2.07e-21 95.5
Msa1217790 MtrunA17_Chr4g0065621 64.179 67 24 0 71 137 7 73 9.08e-21 92.4
Msa1217790 MtrunA17_Chr7g0272571 49.057 106 54 0 78 183 37 142 3.84e-20 90.5
Msa1217790 MtrunA17_Chr1g0208301 56.716 67 29 0 71 137 10 76 4.92e-19 87.4
Msa1217790 MtrunA17_Chr1g0192131 58.904 73 29 1 69 140 10 82 1.67e-18 86.3
Msa1217790 MtrunA17_Chr3g0111541 50.685 73 36 0 69 141 7 79 1.08e-17 80.9
Msa1217790 MtrunA17_Chr1g0191671 53.731 67 31 0 71 137 7 73 2.46e-17 83.6
Msa1217790 MtrunA17_Chr2g0287741 59.016 61 25 0 77 137 18 78 2.52e-13 71.2
Msa1217790 MtrunA17_Chr3g0124411 45.455 66 36 0 74 139 30 95 6.97e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217790 AT5G27690.1 48.544 103 51 1 63 165 19 119 1.08e-27 112
Msa1217790 AT3G06130.2 62.687 67 25 0 71 137 7 73 1.44e-21 94.7
Msa1217790 AT3G06130.1 62.687 67 25 0 71 137 7 73 2.21e-21 95.5
Msa1217790 AT1G56210.1 58.228 79 32 1 73 151 39 116 1.65e-20 92.0
Msa1217790 AT5G19090.2 61.194 67 26 0 71 137 7 73 1.70e-20 92.8
Msa1217790 AT5G19090.3 61.194 67 26 0 71 137 7 73 1.70e-20 92.8
Msa1217790 AT5G19090.5 61.194 67 26 0 71 137 7 73 2.77e-20 92.8
Msa1217790 AT5G19090.4 61.194 67 26 0 71 137 7 73 2.77e-20 92.8
Msa1217790 AT5G19090.1 61.194 67 26 0 71 137 7 73 2.77e-20 92.8
Msa1217790 AT3G05220.1 45.455 99 41 1 71 156 7 105 8.93e-19 88.2
Msa1217790 AT1G23000.1 51.136 88 39 1 71 154 10 97 3.97e-18 85.1
Msa1217790 AT1G23000.2 51.136 88 39 1 71 154 70 157 6.56e-18 85.1
Msa1217790 AT5G37860.1 51.429 70 32 1 69 138 7 74 4.36e-17 80.5

Find 107 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAGGAGCAGTGTGTTAT+TGG 0.241119 8_1:+80306100 Msa1217790:CDS
AGTCTCAAGAGCAGCATTTC+CGG 0.252114 8_1:-80306922 None:intergenic
TCCCTACCACTTCTTTCTAA+TGG 0.297572 8_1:+80306238 Msa1217790:CDS
CTTATTGTTCTTAGCTTTGT+TGG 0.303501 8_1:-80307021 None:intergenic
CAAAGTGACGGAGGAGATTC+TGG 0.303987 8_1:+80307257 Msa1217790:CDS
AAAGGAGGATAACATGTTTC+TGG 0.326816 8_1:-80307461 None:intergenic
CTGTTACTTTATTCTGTTGT+GGG 0.334604 8_1:-80306896 None:intergenic
GAAGTCTCCGGCTGGTGGTA+AGG 0.343097 8_1:+80307208 Msa1217790:CDS
CTCACAACCTTTGAAGTATC+AGG 0.350972 8_1:+80306268 Msa1217790:CDS
GTTGGAATCCTTTACTTTCC+CGG 0.364425 8_1:-80307003 None:intergenic
TAGGGAGAGTGAGAGGGAAT+TGG 0.369042 8_1:-80306221 None:intergenic
TACTACTTTGGTACCCATCT+TGG 0.374787 8_1:+80306138 Msa1217790:CDS
AAAGTTCTTCAGAGCATTGA+TGG 0.380495 8_1:+80306431 Msa1217790:CDS
TTTATGTCATTGGTTTAGTA+GGG 0.390368 8_1:+80307778 Msa1217790:three_prime_UTR
AAGTCTCCGGCTGGTGGTAA+GGG 0.397507 8_1:+80307209 Msa1217790:CDS
AGAAACATGTTATCCTCCTT+TGG 0.402980 8_1:+80307463 Msa1217790:CDS
TTCAGTGATGAAAATGCAAA+TGG 0.414371 8_1:+80307638 Msa1217790:CDS
ACTCAGAGTGGTGGTGGAAC+TGG 0.415991 8_1:+80307299 Msa1217790:CDS
GGTGTAGATTGAAACTGATA+AGG 0.423427 8_1:-80307596 None:intergenic
GGTGGAACTGGAACTGGTAC+TGG 0.429060 8_1:+80307311 Msa1217790:CDS
ATAAGGAAACTTGCCAAAGC+TGG 0.429968 8_1:+80306948 Msa1217790:CDS
ACTTTCCCGGGAAGATTCTC+CGG 0.432811 8_1:-80306990 None:intergenic
ATTGTCACATTATACTACTT+TGG 0.440513 8_1:+80306126 Msa1217790:CDS
CTTCTCCGGTGAGCCTGCAT+TGG 0.441368 8_1:-80307189 None:intergenic
GTTCAGTATTTGCAGAAGAA+TGG 0.444257 8_1:-80307085 None:intergenic
TCTTTGCCAGAGTTGAGGTT+GGG 0.446946 8_1:-80307107 None:intergenic
AGAAGGAGCAGTGTGTTATT+GGG 0.456675 8_1:+80306101 Msa1217790:CDS
GTCTTTGCCAGAGTTGAGGT+TGG 0.465562 8_1:-80307108 None:intergenic
ACTGTTACTTTATTCTGTTG+TGG 0.465847 8_1:-80306897 None:intergenic
TCCGGCTGGTGGTAAGGGGC+AGG 0.471765 8_1:+80307214 Msa1217790:CDS
CCACAACCTGACCTGGACTC+TGG 0.474692 8_1:-80307391 None:intergenic
GAAGTGGTAGGGAGAGTGAG+AGG 0.475907 8_1:-80306228 None:intergenic
CTTGTTACCTGATACTTCAA+AGG 0.480475 8_1:-80306275 None:intergenic
CATTGTCTTTGCCAGAGTTG+AGG 0.481500 8_1:-80307112 None:intergenic
CCAGAGTCCAGGTCAGGTTG+TGG 0.484643 8_1:+80307391 Msa1217790:CDS
ACTTGCCCCACAACCTGACC+TGG 0.491399 8_1:-80307398 None:intergenic
CAGAGTCCAGGTCAGGTTGT+GGG 0.494388 8_1:+80307392 Msa1217790:CDS
TCATCACTGAAGAACTCAAA+GGG 0.495787 8_1:-80307626 None:intergenic
TTGGAATCCTTTACTTTCCC+GGG 0.497963 8_1:-80307002 None:intergenic
ACAAAGGAAACAAGCCAAGA+TGG 0.500180 8_1:-80306152 None:intergenic
TTATGTCCCATGGGAACAAT+GGG 0.501053 8_1:+80307515 Msa1217790:CDS
GAGTGATATTGAAGGGGCAG+AGG 0.503376 8_1:+80306070 Msa1217790:CDS
CCACCAGCCGGAGACTTCTC+CGG 0.503765 8_1:-80307203 None:intergenic
AGTGGTGGTGGAACTGGAAC+TGG 0.504029 8_1:+80307305 Msa1217790:CDS
CTGCTCTTGAGACTCTGATA+AGG 0.510884 8_1:+80306931 Msa1217790:CDS
ATTATGTCCCATGGGAACAA+TGG 0.510951 8_1:+80307514 Msa1217790:CDS
TCCTGCCCCTTACCACCAGC+CGG 0.521714 8_1:-80307215 None:intergenic
ATCAAAATGAAAGTGAGAAG+AGG 0.524463 8_1:-80306189 None:intergenic
AATGAATGAGTGATATTGAA+GGG 0.533057 8_1:+80306063 None:intergenic
AATTCTGTTCCAGTGTGTGC+AGG 0.535092 8_1:-80307368 None:intergenic
ACTGAACCCAACCTCAACTC+TGG 0.537061 8_1:+80307101 Msa1217790:CDS
CAGAATAAAGTAACAGTCAC+CGG 0.539639 8_1:+80306903 Msa1217790:CDS
GGAACTGGTACTGGAAGCAA+TGG 0.540520 8_1:+80307320 Msa1217790:CDS
AGAATTCCAGAGTCCAGGTC+AGG 0.540529 8_1:+80307385 Msa1217790:CDS
AAGTGGTAGGGAGAGTGAGA+GGG 0.543566 8_1:-80306227 None:intergenic
GTGTAGATTGAAACTGATAA+GGG 0.544319 8_1:-80307595 None:intergenic
TCCATTAGAAAGAAGTGGTA+GGG 0.544788 8_1:-80306239 None:intergenic
AAGAACTCAAAGGGAATCAA+AGG 0.545599 8_1:-80307617 None:intergenic
CCTGCACACATGTAGGGTAA+TGG 0.545645 8_1:-80307560 None:intergenic
GGGTTGAATTCAGCATCTAC+TGG 0.546569 8_1:+80307341 Msa1217790:CDS
CCATTACCCTACATGTGTGC+AGG 0.547946 8_1:+80307560 Msa1217790:CDS
TGTACGATTGCTGACGTGTA+GGG 0.549805 8_1:-80307430 None:intergenic
GGAACAGAATTCCAGAGTCC+AGG 0.554436 8_1:+80307380 Msa1217790:CDS
GAATCTTCCCGGGAAAGTAA+AGG 0.555618 8_1:+80306995 Msa1217790:CDS
CTCAACTCTGGCAAAGACAA+TGG 0.558672 8_1:+80307113 Msa1217790:CDS
TTATGTCATTGGTTTAGTAG+GGG 0.559599 8_1:+80307779 Msa1217790:three_prime_UTR
AAGAAAACTCAGAGTGGTGG+TGG 0.559828 8_1:+80307293 Msa1217790:CDS
TCACCGGAGAAGTCTCCGGC+TGG 0.562059 8_1:+80307200 Msa1217790:CDS
ATCAAAGCCTGCACACATGT+AGG 0.562123 8_1:-80307567 None:intergenic
GAATGAATGAGTGATATTGA+AGG 0.565677 8_1:+80306062 None:intergenic
AGGCTCACCGGAGAAGTCTC+CGG 0.565901 8_1:+80307196 Msa1217790:CDS
CAAAGGAAACAAGCCAAGAT+GGG 0.566526 8_1:-80306151 None:intergenic
GGGCAGAGGAAAGCAGCAGA+AGG 0.570675 8_1:+80306084 Msa1217790:CDS
TTCATCACTGAAGAACTCAA+AGG 0.571401 8_1:-80307627 None:intergenic
AAAGTTTCTATCCACTGTGA+AGG 0.572186 8_1:+80306389 Msa1217790:CDS
AGGACAACCCATTGTTCCCA+TGG 0.573869 8_1:-80307522 None:intergenic
ACTGGTGCACCTGCACACAC+TGG 0.576692 8_1:+80307359 Msa1217790:CDS
AGAGTCCAGGTCAGGTTGTG+GGG 0.576942 8_1:+80307393 Msa1217790:CDS
AAGATTCTCCGGCAAAACCT+CGG 0.580702 8_1:-80306979 None:intergenic
ATGTACGATTGCTGACGTGT+AGG 0.582334 8_1:-80307431 None:intergenic
AGTCTCCGGCTGGTGGTAAG+GGG 0.587065 8_1:+80307210 Msa1217790:CDS
AATGGTGGAACATAGTAAGA+AGG 0.587419 8_1:-80307542 None:intergenic
TCAAAGCCTGCACACATGTA+GGG 0.588146 8_1:-80307566 None:intergenic
GAAGATCTTAGTCTTAACAC+TGG 0.588636 8_1:+80307817 Msa1217790:three_prime_UTR
CCGGAGAAGTCTCCGGCTGG+TGG 0.597364 8_1:+80307203 Msa1217790:CDS
TAGCATCCATTAGAAAGAAG+TGG 0.601642 8_1:-80306244 None:intergenic
GAAAATGCTGAAAAGAGTAA+CGG 0.604011 8_1:+80307140 Msa1217790:CDS
GCATACTGTAACTGTACCAA+AGG 0.606232 8_1:-80307479 None:intergenic
ATCCATTAGAAAGAAGTGGT+AGG 0.606650 8_1:-80306240 None:intergenic
TACTGTAACTGTACCAAAGG+AGG 0.608858 8_1:-80307476 None:intergenic
GGAAAATGCCAAGAAAACAA+AGG 0.610475 8_1:-80306168 None:intergenic
TACAACAGATTATGTCCCAT+GGG 0.611088 8_1:+80307506 Msa1217790:CDS
CTGATACTTCAAAGGTTGTG+AGG 0.611217 8_1:-80306267 None:intergenic
TCAGTGATGAAAATGCAAAT+GGG 0.618236 8_1:+80307639 Msa1217790:CDS
AACAAGAGTGGTCAAAGTGA+CGG 0.620183 8_1:+80307245 Msa1217790:CDS
TCCACTGTGAAGGTTGCAGA+AGG 0.622366 8_1:+80306399 Msa1217790:CDS
TTACAACAGATTATGTCCCA+TGG 0.627593 8_1:+80307505 Msa1217790:CDS
GCACACATGTAGGGTAATGG+TGG 0.635142 8_1:-80307557 None:intergenic
ATGAATGAGTGATATTGAAG+GGG 0.641944 8_1:+80306064 None:intergenic
GGACAACCCATTGTTCCCAT+GGG 0.650796 8_1:-80307521 None:intergenic
GAACTGGTACTGGAAGCAAT+GGG 0.662909 8_1:+80307321 Msa1217790:CDS
ATGAAGAAAACTCAGAGTGG+TGG 0.667457 8_1:+80307290 Msa1217790:CDS
CAAAGCTGGAAAACACGCCG+AGG 0.682819 8_1:+80306962 Msa1217790:CDS
CAGGAAACAAAGAACAAGAG+TGG 0.686430 8_1:+80307233 Msa1217790:CDS
AAGAGTGGTCAAAGTGACGG+AGG 0.693962 8_1:+80307248 Msa1217790:CDS
TCCTTCTGCAACCTTCACAG+TGG 0.695716 8_1:-80306400 None:intergenic
AAGATGAAGAAAACTCAGAG+TGG 0.726316 8_1:+80307287 Msa1217790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATAAACTAAACT+TGG + chr8_1:80306341-80306360 Msa1217790:intron 10.0%
!!! TTTATTTTATAAACTAAACT+TGG + chr8_1:80306341-80306360 Msa1217790:intron 10.0%
!!! AAAGAAAGATTTTGACAATA+GGG - chr8_1:80306324-80306343 None:intergenic 20.0%
!!! TAAAGAAAGATTTTGACAAT+AGG - chr8_1:80306325-80306344 None:intergenic 20.0%
!!! GATTTTGTTTGTTCTATTAT+AGG + chr8_1:80307700-80307719 Msa1217790:three_prime_UTR 20.0%
!!! TAGTATATGTTTTATGTCAT+TGG + chr8_1:80307768-80307787 Msa1217790:three_prime_UTR 20.0%
!!! GCTTTAGCTTATTTTAATTT+TGG + chr8_1:80307858-80307877 Msa1217790:three_prime_UTR 20.0%
!!! AAAGAAAGATTTTGACAATA+GGG - chr8_1:80306324-80306343 None:intergenic 20.0%
!!! TAAAGAAAGATTTTGACAAT+AGG - chr8_1:80306325-80306344 None:intergenic 20.0%
!!! GATTTTGTTTGTTCTATTAT+AGG + chr8_1:80307700-80307719 Msa1217790:three_prime_UTR 20.0%
!!! TAGTATATGTTTTATGTCAT+TGG + chr8_1:80307768-80307787 Msa1217790:three_prime_UTR 20.0%
! ATTGTCACATTATACTACTT+TGG + chr8_1:80306126-80306145 Msa1217790:CDS 25.0%
!!! AAGAAAGATTTTGACAATAG+GGG - chr8_1:80306323-80306342 None:intergenic 25.0%
! GTTGAAAACTTAAGTTAGTT+TGG - chr8_1:80306472-80306491 None:intergenic 25.0%
!!! TTTTTTTTTCATCTCATGCA+TGG + chr8_1:80306501-80306520 Msa1217790:intron 25.0%
!!! ATTATAGGATAGTTTTGTTG+TGG + chr8_1:80307715-80307734 Msa1217790:three_prime_UTR 25.0%
!! TGTGGTAATTTTGTAATTGA+CGG + chr8_1:80307733-80307752 Msa1217790:three_prime_UTR 25.0%
!!! TTTTATGTCATTGGTTTAGT+AGG + chr8_1:80307777-80307796 Msa1217790:three_prime_UTR 25.0%
!!! TTTATGTCATTGGTTTAGTA+GGG + chr8_1:80307778-80307797 Msa1217790:three_prime_UTR 25.0%
! ATTGTCACATTATACTACTT+TGG + chr8_1:80306126-80306145 Msa1217790:CDS 25.0%
!!! AAGAAAGATTTTGACAATAG+GGG - chr8_1:80306323-80306342 None:intergenic 25.0%
! GTTGAAAACTTAAGTTAGTT+TGG - chr8_1:80306472-80306491 None:intergenic 25.0%
!!! TTTTTTTTTCATCTCATGCA+TGG + chr8_1:80306501-80306520 Msa1217790:intron 25.0%
!!! ATTATAGGATAGTTTTGTTG+TGG + chr8_1:80307715-80307734 Msa1217790:three_prime_UTR 25.0%
!! TGTGGTAATTTTGTAATTGA+CGG + chr8_1:80307733-80307752 Msa1217790:three_prime_UTR 25.0%
!!! TTTTATGTCATTGGTTTAGT+AGG + chr8_1:80307777-80307796 Msa1217790:three_prime_UTR 25.0%
!!! TTTATGTCATTGGTTTAGTA+GGG + chr8_1:80307778-80307797 Msa1217790:three_prime_UTR 25.0%
ATCAAAATGAAAGTGAGAAG+AGG - chr8_1:80306192-80306211 None:intergenic 30.0%
TCATGCATGGAAATATTACA+AGG + chr8_1:80306514-80306533 Msa1217790:intron 30.0%
CTTACTACTAAAAAGCTGTA+TGG + chr8_1:80306552-80306571 Msa1217790:intron 30.0%
TACTAAAAAGCTGTATGGTT+TGG + chr8_1:80306557-80306576 Msa1217790:intron 30.0%
ATCACATTTATGTTCTGTGT+CGG - chr8_1:80306693-80306712 None:intergenic 30.0%
!! TTACCATTTTTGTGTTGTTG+TGG + chr8_1:80306811-80306830 Msa1217790:intron 30.0%
! TTGTTGTGGTGACAAAATTT+TGG + chr8_1:80306825-80306844 Msa1217790:intron 30.0%
! TGTTGTGGTGACAAAATTTT+GGG + chr8_1:80306826-80306845 Msa1217790:intron 30.0%
TTTCATAACATTTGCAATGC+AGG + chr8_1:80306852-80306871 Msa1217790:intron 30.0%
!! CTGTTACTTTATTCTGTTGT+GGG - chr8_1:80306899-80306918 None:intergenic 30.0%
!! ACTGTTACTTTATTCTGTTG+TGG - chr8_1:80306900-80306919 None:intergenic 30.0%
!! CTTATTGTTCTTAGCTTTGT+TGG - chr8_1:80307024-80307043 None:intergenic 30.0%
! TTTTCTTTTGCTGAGTTTCT+TGG - chr8_1:80307064-80307083 None:intergenic 30.0%
GAAAATGCTGAAAAGAGTAA+CGG + chr8_1:80307140-80307159 Msa1217790:CDS 30.0%
GTGTAGATTGAAACTGATAA+GGG - chr8_1:80307598-80307617 None:intergenic 30.0%
TTCAGTGATGAAAATGCAAA+TGG + chr8_1:80307638-80307657 Msa1217790:CDS 30.0%
TCAGTGATGAAAATGCAAAT+GGG + chr8_1:80307639-80307658 Msa1217790:CDS 30.0%
!! TTATGTCATTGGTTTAGTAG+GGG + chr8_1:80307779-80307798 Msa1217790:three_prime_UTR 30.0%
ATCAAAATGAAAGTGAGAAG+AGG - chr8_1:80306192-80306211 None:intergenic 30.0%
TCATGCATGGAAATATTACA+AGG + chr8_1:80306514-80306533 Msa1217790:intron 30.0%
CTTACTACTAAAAAGCTGTA+TGG + chr8_1:80306552-80306571 Msa1217790:intron 30.0%
TACTAAAAAGCTGTATGGTT+TGG + chr8_1:80306557-80306576 Msa1217790:intron 30.0%
ATCACATTTATGTTCTGTGT+CGG - chr8_1:80306693-80306712 None:intergenic 30.0%
!! TTACCATTTTTGTGTTGTTG+TGG + chr8_1:80306811-80306830 Msa1217790:intron 30.0%
! TTGTTGTGGTGACAAAATTT+TGG + chr8_1:80306825-80306844 Msa1217790:intron 30.0%
! TGTTGTGGTGACAAAATTTT+GGG + chr8_1:80306826-80306845 Msa1217790:intron 30.0%
TTTCATAACATTTGCAATGC+AGG + chr8_1:80306852-80306871 Msa1217790:intron 30.0%
!! CTGTTACTTTATTCTGTTGT+GGG - chr8_1:80306899-80306918 None:intergenic 30.0%
!! ACTGTTACTTTATTCTGTTG+TGG - chr8_1:80306900-80306919 None:intergenic 30.0%
!! CTTATTGTTCTTAGCTTTGT+TGG - chr8_1:80307024-80307043 None:intergenic 30.0%
! TTTTCTTTTGCTGAGTTTCT+TGG - chr8_1:80307064-80307083 None:intergenic 30.0%
GAAAATGCTGAAAAGAGTAA+CGG + chr8_1:80307140-80307159 Msa1217790:CDS 30.0%
GTGTAGATTGAAACTGATAA+GGG - chr8_1:80307598-80307617 None:intergenic 30.0%
TTCAGTGATGAAAATGCAAA+TGG + chr8_1:80307638-80307657 Msa1217790:CDS 30.0%
TCAGTGATGAAAATGCAAAT+GGG + chr8_1:80307639-80307658 Msa1217790:CDS 30.0%
!! TTATGTCATTGGTTTAGTAG+GGG + chr8_1:80307779-80307798 Msa1217790:three_prime_UTR 30.0%
!!! GCTTGTTTCCTTTGTTTTCT+TGG + chr8_1:80306160-80306179 Msa1217790:CDS 35.0%
GGAAAATGCCAAGAAAACAA+AGG - chr8_1:80306171-80306190 None:intergenic 35.0%
TCCATTAGAAAGAAGTGGTA+GGG - chr8_1:80306242-80306261 None:intergenic 35.0%
ATCCATTAGAAAGAAGTGGT+AGG - chr8_1:80306243-80306262 None:intergenic 35.0%
TAGCATCCATTAGAAAGAAG+TGG - chr8_1:80306247-80306266 None:intergenic 35.0%
CTTGTTACCTGATACTTCAA+AGG - chr8_1:80306278-80306297 None:intergenic 35.0%
!!! TTGGTTTTGTTTCACAGACA+TGG + chr8_1:80306360-80306379 Msa1217790:intron 35.0%
AAAGTTTCTATCCACTGTGA+AGG + chr8_1:80306389-80306408 Msa1217790:CDS 35.0%
!! AAAGTTCTTCAGAGCATTGA+TGG + chr8_1:80306431-80306450 Msa1217790:CDS 35.0%
! TAAAAAGCTGTATGGTTTGG+TGG + chr8_1:80306560-80306579 Msa1217790:intron 35.0%
ACACTAACATTGTCACTAAC+TGG - chr8_1:80306754-80306773 None:intergenic 35.0%
TCACCACAACAACACAAAAA+TGG - chr8_1:80306817-80306836 None:intergenic 35.0%
! GTTGTGGTGACAAAATTTTG+GGG + chr8_1:80306827-80306846 Msa1217790:intron 35.0%
CAGAATAAAGTAACAGTCAC+CGG + chr8_1:80306903-80306922 Msa1217790:CDS 35.0%
GTTCAGTATTTGCAGAAGAA+TGG - chr8_1:80307088-80307107 None:intergenic 35.0%
ACTAACACAAAAACCAATGC+AGG + chr8_1:80307176-80307195 Msa1217790:CDS 35.0%
AAGATGAAGAAAACTCAGAG+TGG + chr8_1:80307287-80307306 Msa1217790:CDS 35.0%
AAAGGAGGATAACATGTTTC+TGG - chr8_1:80307464-80307483 None:intergenic 35.0%
AGAAACATGTTATCCTCCTT+TGG + chr8_1:80307463-80307482 Msa1217790:CDS 35.0%
TTACAACAGATTATGTCCCA+TGG + chr8_1:80307505-80307524 Msa1217790:CDS 35.0%
TACAACAGATTATGTCCCAT+GGG + chr8_1:80307506-80307525 Msa1217790:CDS 35.0%
! AATGGTGGAACATAGTAAGA+AGG - chr8_1:80307545-80307564 None:intergenic 35.0%
GGTGTAGATTGAAACTGATA+AGG - chr8_1:80307599-80307618 None:intergenic 35.0%
AAGAACTCAAAGGGAATCAA+AGG - chr8_1:80307620-80307639 None:intergenic 35.0%
TCATCACTGAAGAACTCAAA+GGG - chr8_1:80307629-80307648 None:intergenic 35.0%
TTCATCACTGAAGAACTCAA+AGG - chr8_1:80307630-80307649 None:intergenic 35.0%
!! GAAGATCTTAGTCTTAACAC+TGG + chr8_1:80307817-80307836 Msa1217790:three_prime_UTR 35.0%
!!! GCTTGTTTCCTTTGTTTTCT+TGG + chr8_1:80306160-80306179 Msa1217790:CDS 35.0%
GGAAAATGCCAAGAAAACAA+AGG - chr8_1:80306171-80306190 None:intergenic 35.0%
TCCATTAGAAAGAAGTGGTA+GGG - chr8_1:80306242-80306261 None:intergenic 35.0%
ATCCATTAGAAAGAAGTGGT+AGG - chr8_1:80306243-80306262 None:intergenic 35.0%
TAGCATCCATTAGAAAGAAG+TGG - chr8_1:80306247-80306266 None:intergenic 35.0%
CTTGTTACCTGATACTTCAA+AGG - chr8_1:80306278-80306297 None:intergenic 35.0%
!!! TTGGTTTTGTTTCACAGACA+TGG + chr8_1:80306360-80306379 Msa1217790:intron 35.0%
AAAGTTTCTATCCACTGTGA+AGG + chr8_1:80306389-80306408 Msa1217790:CDS 35.0%
!! AAAGTTCTTCAGAGCATTGA+TGG + chr8_1:80306431-80306450 Msa1217790:CDS 35.0%
! TAAAAAGCTGTATGGTTTGG+TGG + chr8_1:80306560-80306579 Msa1217790:intron 35.0%
ACACTAACATTGTCACTAAC+TGG - chr8_1:80306754-80306773 None:intergenic 35.0%
TCACCACAACAACACAAAAA+TGG - chr8_1:80306817-80306836 None:intergenic 35.0%
! GTTGTGGTGACAAAATTTTG+GGG + chr8_1:80306827-80306846 Msa1217790:intron 35.0%
CAGAATAAAGTAACAGTCAC+CGG + chr8_1:80306903-80306922 Msa1217790:CDS 35.0%
GTTCAGTATTTGCAGAAGAA+TGG - chr8_1:80307088-80307107 None:intergenic 35.0%
ACTAACACAAAAACCAATGC+AGG + chr8_1:80307176-80307195 Msa1217790:CDS 35.0%
AAGATGAAGAAAACTCAGAG+TGG + chr8_1:80307287-80307306 Msa1217790:CDS 35.0%
AAAGGAGGATAACATGTTTC+TGG - chr8_1:80307464-80307483 None:intergenic 35.0%
AGAAACATGTTATCCTCCTT+TGG + chr8_1:80307463-80307482 Msa1217790:CDS 35.0%
TTACAACAGATTATGTCCCA+TGG + chr8_1:80307505-80307524 Msa1217790:CDS 35.0%
TACAACAGATTATGTCCCAT+GGG + chr8_1:80307506-80307525 Msa1217790:CDS 35.0%
! AATGGTGGAACATAGTAAGA+AGG - chr8_1:80307545-80307564 None:intergenic 35.0%
GGTGTAGATTGAAACTGATA+AGG - chr8_1:80307599-80307618 None:intergenic 35.0%
AAGAACTCAAAGGGAATCAA+AGG - chr8_1:80307620-80307639 None:intergenic 35.0%
TCATCACTGAAGAACTCAAA+GGG - chr8_1:80307629-80307648 None:intergenic 35.0%
TTCATCACTGAAGAACTCAA+AGG - chr8_1:80307630-80307649 None:intergenic 35.0%
!! GAAGATCTTAGTCTTAACAC+TGG + chr8_1:80307817-80307836 Msa1217790:three_prime_UTR 35.0%
! AGAAGGAGCAGTGTGTTATT+GGG + chr8_1:80306101-80306120 Msa1217790:CDS 40.0%
TACTACTTTGGTACCCATCT+TGG + chr8_1:80306138-80306157 Msa1217790:CDS 40.0%
CAAAGGAAACAAGCCAAGAT+GGG - chr8_1:80306154-80306173 None:intergenic 40.0%
ACAAAGGAAACAAGCCAAGA+TGG - chr8_1:80306155-80306174 None:intergenic 40.0%
TCCCTACCACTTCTTTCTAA+TGG + chr8_1:80306238-80306257 Msa1217790:CDS 40.0%
CTGATACTTCAAAGGTTGTG+AGG - chr8_1:80306270-80306289 None:intergenic 40.0%
!! CTCACAACCTTTGAAGTATC+AGG + chr8_1:80306268-80306287 Msa1217790:CDS 40.0%
CCATACTCATCTTCAATCTG+AGG - chr8_1:80306621-80306640 None:intergenic 40.0%
CCTCAGATTGAAGATGAGTA+TGG + chr8_1:80306618-80306637 Msa1217790:intron 40.0%
ATAAGGAAACTTGCCAAAGC+TGG + chr8_1:80306948-80306967 Msa1217790:CDS 40.0%
TTGGAATCCTTTACTTTCCC+GGG - chr8_1:80307005-80307024 None:intergenic 40.0%
GTTGGAATCCTTTACTTTCC+CGG - chr8_1:80307006-80307025 None:intergenic 40.0%
CAGGAAACAAAGAACAAGAG+TGG + chr8_1:80307233-80307252 Msa1217790:CDS 40.0%
AACAAGAGTGGTCAAAGTGA+CGG + chr8_1:80307245-80307264 Msa1217790:CDS 40.0%
ATGAAGAAAACTCAGAGTGG+TGG + chr8_1:80307290-80307309 Msa1217790:CDS 40.0%
TACTGTAACTGTACCAAAGG+AGG - chr8_1:80307479-80307498 None:intergenic 40.0%
GCATACTGTAACTGTACCAA+AGG - chr8_1:80307482-80307501 None:intergenic 40.0%
ATTATGTCCCATGGGAACAA+TGG + chr8_1:80307514-80307533 Msa1217790:CDS 40.0%
TTATGTCCCATGGGAACAAT+GGG + chr8_1:80307515-80307534 Msa1217790:CDS 40.0%
! AGAAGGAGCAGTGTGTTATT+GGG + chr8_1:80306101-80306120 Msa1217790:CDS 40.0%
TACTACTTTGGTACCCATCT+TGG + chr8_1:80306138-80306157 Msa1217790:CDS 40.0%
CAAAGGAAACAAGCCAAGAT+GGG - chr8_1:80306154-80306173 None:intergenic 40.0%
ACAAAGGAAACAAGCCAAGA+TGG - chr8_1:80306155-80306174 None:intergenic 40.0%
TCCCTACCACTTCTTTCTAA+TGG + chr8_1:80306238-80306257 Msa1217790:CDS 40.0%
CTGATACTTCAAAGGTTGTG+AGG - chr8_1:80306270-80306289 None:intergenic 40.0%
!! CTCACAACCTTTGAAGTATC+AGG + chr8_1:80306268-80306287 Msa1217790:CDS 40.0%
CCATACTCATCTTCAATCTG+AGG - chr8_1:80306621-80306640 None:intergenic 40.0%
CCTCAGATTGAAGATGAGTA+TGG + chr8_1:80306618-80306637 Msa1217790:intron 40.0%
ATAAGGAAACTTGCCAAAGC+TGG + chr8_1:80306948-80306967 Msa1217790:CDS 40.0%
TTGGAATCCTTTACTTTCCC+GGG - chr8_1:80307005-80307024 None:intergenic 40.0%
GTTGGAATCCTTTACTTTCC+CGG - chr8_1:80307006-80307025 None:intergenic 40.0%
CAGGAAACAAAGAACAAGAG+TGG + chr8_1:80307233-80307252 Msa1217790:CDS 40.0%
AACAAGAGTGGTCAAAGTGA+CGG + chr8_1:80307245-80307264 Msa1217790:CDS 40.0%
ATGAAGAAAACTCAGAGTGG+TGG + chr8_1:80307290-80307309 Msa1217790:CDS 40.0%
TACTGTAACTGTACCAAAGG+AGG - chr8_1:80307479-80307498 None:intergenic 40.0%
GCATACTGTAACTGTACCAA+AGG - chr8_1:80307482-80307501 None:intergenic 40.0%
ATTATGTCCCATGGGAACAA+TGG + chr8_1:80307514-80307533 Msa1217790:CDS 40.0%
TTATGTCCCATGGGAACAAT+GGG + chr8_1:80307515-80307534 Msa1217790:CDS 40.0%
CAGAAGGAGCAGTGTGTTAT+TGG + chr8_1:80306100-80306119 Msa1217790:CDS 45.0%
! TGTTGGTGTCTCACATGTGT+CGG + chr8_1:80306652-80306671 Msa1217790:intron 45.0%
AGTCTCAAGAGCAGCATTTC+CGG - chr8_1:80306925-80306944 None:intergenic 45.0%
CTGCTCTTGAGACTCTGATA+AGG + chr8_1:80306931-80306950 Msa1217790:CDS 45.0%
AAGATTCTCCGGCAAAACCT+CGG - chr8_1:80306982-80307001 None:intergenic 45.0%
GAATCTTCCCGGGAAAGTAA+AGG + chr8_1:80306995-80307014 Msa1217790:CDS 45.0%
TCTTTGCCAGAGTTGAGGTT+GGG - chr8_1:80307110-80307129 None:intergenic 45.0%
CATTGTCTTTGCCAGAGTTG+AGG - chr8_1:80307115-80307134 None:intergenic 45.0%
CTCAACTCTGGCAAAGACAA+TGG + chr8_1:80307113-80307132 Msa1217790:CDS 45.0%
AAAAACCAATGCAGGCTCAC+CGG + chr8_1:80307184-80307203 Msa1217790:CDS 45.0%
AAGAAAACTCAGAGTGGTGG+TGG + chr8_1:80307293-80307312 Msa1217790:CDS 45.0%
! GAACTGGTACTGGAAGCAAT+GGG + chr8_1:80307321-80307340 Msa1217790:CDS 45.0%
GGGTTGAATTCAGCATCTAC+TGG + chr8_1:80307341-80307360 Msa1217790:CDS 45.0%
AATTCTGTTCCAGTGTGTGC+AGG - chr8_1:80307371-80307390 None:intergenic 45.0%
TGTACGATTGCTGACGTGTA+GGG - chr8_1:80307433-80307452 None:intergenic 45.0%
ATGTACGATTGCTGACGTGT+AGG - chr8_1:80307434-80307453 None:intergenic 45.0%
TCAAAGCCTGCACACATGTA+GGG - chr8_1:80307569-80307588 None:intergenic 45.0%
ATCAAAGCCTGCACACATGT+AGG - chr8_1:80307570-80307589 None:intergenic 45.0%
CAGAAGGAGCAGTGTGTTAT+TGG + chr8_1:80306100-80306119 Msa1217790:CDS 45.0%
! TGTTGGTGTCTCACATGTGT+CGG + chr8_1:80306652-80306671 Msa1217790:intron 45.0%
AGTCTCAAGAGCAGCATTTC+CGG - chr8_1:80306925-80306944 None:intergenic 45.0%
CTGCTCTTGAGACTCTGATA+AGG + chr8_1:80306931-80306950 Msa1217790:CDS 45.0%
AAGATTCTCCGGCAAAACCT+CGG - chr8_1:80306982-80307001 None:intergenic 45.0%
GAATCTTCCCGGGAAAGTAA+AGG + chr8_1:80306995-80307014 Msa1217790:CDS 45.0%
TCTTTGCCAGAGTTGAGGTT+GGG - chr8_1:80307110-80307129 None:intergenic 45.0%
CATTGTCTTTGCCAGAGTTG+AGG - chr8_1:80307115-80307134 None:intergenic 45.0%
CTCAACTCTGGCAAAGACAA+TGG + chr8_1:80307113-80307132 Msa1217790:CDS 45.0%
AAAAACCAATGCAGGCTCAC+CGG + chr8_1:80307184-80307203 Msa1217790:CDS 45.0%
AAGAAAACTCAGAGTGGTGG+TGG + chr8_1:80307293-80307312 Msa1217790:CDS 45.0%
! GAACTGGTACTGGAAGCAAT+GGG + chr8_1:80307321-80307340 Msa1217790:CDS 45.0%
GGGTTGAATTCAGCATCTAC+TGG + chr8_1:80307341-80307360 Msa1217790:CDS 45.0%
AATTCTGTTCCAGTGTGTGC+AGG - chr8_1:80307371-80307390 None:intergenic 45.0%
TGTACGATTGCTGACGTGTA+GGG - chr8_1:80307433-80307452 None:intergenic 45.0%
ATGTACGATTGCTGACGTGT+AGG - chr8_1:80307434-80307453 None:intergenic 45.0%
TCAAAGCCTGCACACATGTA+GGG - chr8_1:80307569-80307588 None:intergenic 45.0%
ATCAAAGCCTGCACACATGT+AGG - chr8_1:80307570-80307589 None:intergenic 45.0%
GAGTGATATTGAAGGGGCAG+AGG + chr8_1:80306070-80306089 Msa1217790:CDS 50.0%
TAGGGAGAGTGAGAGGGAAT+TGG - chr8_1:80306224-80306243 None:intergenic 50.0%
AAGTGGTAGGGAGAGTGAGA+GGG - chr8_1:80306230-80306249 None:intergenic 50.0%
TCCACTGTGAAGGTTGCAGA+AGG + chr8_1:80306399-80306418 Msa1217790:CDS 50.0%
TCCTTCTGCAACCTTCACAG+TGG - chr8_1:80306403-80306422 None:intergenic 50.0%
!! AAGCTGTATGGTTTGGTGGC+TGG + chr8_1:80306564-80306583 Msa1217790:intron 50.0%
TGTGAGACACCAACACGTGT+CGG - chr8_1:80306647-80306666 None:intergenic 50.0%
! AAAACACGCCGAGGTTTTGC+CGG + chr8_1:80306971-80306990 Msa1217790:CDS 50.0%
! GTTTTGCCGGAGAATCTTCC+CGG + chr8_1:80306984-80307003 Msa1217790:CDS 50.0%
! TTTTGCCGGAGAATCTTCCC+GGG + chr8_1:80306985-80307004 Msa1217790:CDS 50.0%
ACTTTCCCGGGAAGATTCTC+CGG - chr8_1:80306993-80307012 None:intergenic 50.0%
ACTGAACCCAACCTCAACTC+TGG + chr8_1:80307101-80307120 Msa1217790:CDS 50.0%
GTCTTTGCCAGAGTTGAGGT+TGG - chr8_1:80307111-80307130 None:intergenic 50.0%
AAGAGTGGTCAAAGTGACGG+AGG + chr8_1:80307248-80307267 Msa1217790:CDS 50.0%
! CAAAGTGACGGAGGAGATTC+TGG + chr8_1:80307257-80307276 Msa1217790:CDS 50.0%
! GGAACTGGTACTGGAAGCAA+TGG + chr8_1:80307320-80307339 Msa1217790:CDS 50.0%
GGAACAGAATTCCAGAGTCC+AGG + chr8_1:80307380-80307399 Msa1217790:CDS 50.0%
AGAATTCCAGAGTCCAGGTC+AGG + chr8_1:80307385-80307404 Msa1217790:CDS 50.0%
GGACAACCCATTGTTCCCAT+GGG - chr8_1:80307524-80307543 None:intergenic 50.0%
AGGACAACCCATTGTTCCCA+TGG - chr8_1:80307525-80307544 None:intergenic 50.0%
! GCACACATGTAGGGTAATGG+TGG - chr8_1:80307560-80307579 None:intergenic 50.0%
CCTGCACACATGTAGGGTAA+TGG - chr8_1:80307563-80307582 None:intergenic 50.0%
CCATTACCCTACATGTGTGC+AGG + chr8_1:80307560-80307579 Msa1217790:CDS 50.0%
GAGTGATATTGAAGGGGCAG+AGG + chr8_1:80306070-80306089 Msa1217790:CDS 50.0%
TAGGGAGAGTGAGAGGGAAT+TGG - chr8_1:80306224-80306243 None:intergenic 50.0%
AAGTGGTAGGGAGAGTGAGA+GGG - chr8_1:80306230-80306249 None:intergenic 50.0%
TCCACTGTGAAGGTTGCAGA+AGG + chr8_1:80306399-80306418 Msa1217790:CDS 50.0%
TCCTTCTGCAACCTTCACAG+TGG - chr8_1:80306403-80306422 None:intergenic 50.0%
!! AAGCTGTATGGTTTGGTGGC+TGG + chr8_1:80306564-80306583 Msa1217790:intron 50.0%
TGTGAGACACCAACACGTGT+CGG - chr8_1:80306647-80306666 None:intergenic 50.0%
! AAAACACGCCGAGGTTTTGC+CGG + chr8_1:80306971-80306990 Msa1217790:CDS 50.0%
! GTTTTGCCGGAGAATCTTCC+CGG + chr8_1:80306984-80307003 Msa1217790:CDS 50.0%
! TTTTGCCGGAGAATCTTCCC+GGG + chr8_1:80306985-80307004 Msa1217790:CDS 50.0%
ACTTTCCCGGGAAGATTCTC+CGG - chr8_1:80306993-80307012 None:intergenic 50.0%
ACTGAACCCAACCTCAACTC+TGG + chr8_1:80307101-80307120 Msa1217790:CDS 50.0%
GTCTTTGCCAGAGTTGAGGT+TGG - chr8_1:80307111-80307130 None:intergenic 50.0%
AAGAGTGGTCAAAGTGACGG+AGG + chr8_1:80307248-80307267 Msa1217790:CDS 50.0%
! CAAAGTGACGGAGGAGATTC+TGG + chr8_1:80307257-80307276 Msa1217790:CDS 50.0%
! GGAACTGGTACTGGAAGCAA+TGG + chr8_1:80307320-80307339 Msa1217790:CDS 50.0%
GGAACAGAATTCCAGAGTCC+AGG + chr8_1:80307380-80307399 Msa1217790:CDS 50.0%
AGAATTCCAGAGTCCAGGTC+AGG + chr8_1:80307385-80307404 Msa1217790:CDS 50.0%
GGACAACCCATTGTTCCCAT+GGG - chr8_1:80307524-80307543 None:intergenic 50.0%
AGGACAACCCATTGTTCCCA+TGG - chr8_1:80307525-80307544 None:intergenic 50.0%
! GCACACATGTAGGGTAATGG+TGG - chr8_1:80307560-80307579 None:intergenic 50.0%
CCTGCACACATGTAGGGTAA+TGG - chr8_1:80307563-80307582 None:intergenic 50.0%
CCATTACCCTACATGTGTGC+AGG + chr8_1:80307560-80307579 Msa1217790:CDS 50.0%
GAAGTGGTAGGGAGAGTGAG+AGG - chr8_1:80306231-80306250 None:intergenic 55.0%
GTATGGTGTCCGACACGTGT+TGG + chr8_1:80306635-80306654 Msa1217790:intron 55.0%
! CTCGGCGTGTTTTCCAGCTT+TGG - chr8_1:80306964-80306983 None:intergenic 55.0%
CAAAGCTGGAAAACACGCCG+AGG + chr8_1:80306962-80306981 Msa1217790:CDS 55.0%
AAGTCTCCGGCTGGTGGTAA+GGG + chr8_1:80307209-80307228 Msa1217790:CDS 55.0%
!! ACTCAGAGTGGTGGTGGAAC+TGG + chr8_1:80307299-80307318 Msa1217790:CDS 55.0%
!! AGTGGTGGTGGAACTGGAAC+TGG + chr8_1:80307305-80307324 Msa1217790:CDS 55.0%
GGTGGAACTGGAACTGGTAC+TGG + chr8_1:80307311-80307330 Msa1217790:CDS 55.0%
! CAGAGTCCAGGTCAGGTTGT+GGG + chr8_1:80307392-80307411 Msa1217790:CDS 55.0%
! AGAGTCCAGGTCAGGTTGTG+GGG + chr8_1:80307393-80307412 Msa1217790:CDS 55.0%
GAAGTGGTAGGGAGAGTGAG+AGG - chr8_1:80306231-80306250 None:intergenic 55.0%
GTATGGTGTCCGACACGTGT+TGG + chr8_1:80306635-80306654 Msa1217790:intron 55.0%
! CTCGGCGTGTTTTCCAGCTT+TGG - chr8_1:80306964-80306983 None:intergenic 55.0%
CAAAGCTGGAAAACACGCCG+AGG + chr8_1:80306962-80306981 Msa1217790:CDS 55.0%
AAGTCTCCGGCTGGTGGTAA+GGG + chr8_1:80307209-80307228 Msa1217790:CDS 55.0%
!! ACTCAGAGTGGTGGTGGAAC+TGG + chr8_1:80307299-80307318 Msa1217790:CDS 55.0%
!! AGTGGTGGTGGAACTGGAAC+TGG + chr8_1:80307305-80307324 Msa1217790:CDS 55.0%
GGTGGAACTGGAACTGGTAC+TGG + chr8_1:80307311-80307330 Msa1217790:CDS 55.0%
! CAGAGTCCAGGTCAGGTTGT+GGG + chr8_1:80307392-80307411 Msa1217790:CDS 55.0%
! AGAGTCCAGGTCAGGTTGTG+GGG + chr8_1:80307393-80307412 Msa1217790:CDS 55.0%
GGGCAGAGGAAAGCAGCAGA+AGG + chr8_1:80306084-80306103 Msa1217790:CDS 60.0%
CTTCTCCGGTGAGCCTGCAT+TGG - chr8_1:80307192-80307211 None:intergenic 60.0%
AGGCTCACCGGAGAAGTCTC+CGG + chr8_1:80307196-80307215 Msa1217790:CDS 60.0%
GAAGTCTCCGGCTGGTGGTA+AGG + chr8_1:80307208-80307227 Msa1217790:CDS 60.0%
AGTCTCCGGCTGGTGGTAAG+GGG + chr8_1:80307210-80307229 Msa1217790:CDS 60.0%
ACTGGTGCACCTGCACACAC+TGG + chr8_1:80307359-80307378 Msa1217790:CDS 60.0%
CCACAACCTGACCTGGACTC+TGG - chr8_1:80307394-80307413 None:intergenic 60.0%
! CCAGAGTCCAGGTCAGGTTG+TGG + chr8_1:80307391-80307410 Msa1217790:CDS 60.0%
ACTTGCCCCACAACCTGACC+TGG - chr8_1:80307401-80307420 None:intergenic 60.0%
GGGCAGAGGAAAGCAGCAGA+AGG + chr8_1:80306084-80306103 Msa1217790:CDS 60.0%
CTTCTCCGGTGAGCCTGCAT+TGG - chr8_1:80307192-80307211 None:intergenic 60.0%
AGGCTCACCGGAGAAGTCTC+CGG + chr8_1:80307196-80307215 Msa1217790:CDS 60.0%
GAAGTCTCCGGCTGGTGGTA+AGG + chr8_1:80307208-80307227 Msa1217790:CDS 60.0%
AGTCTCCGGCTGGTGGTAAG+GGG + chr8_1:80307210-80307229 Msa1217790:CDS 60.0%
ACTGGTGCACCTGCACACAC+TGG + chr8_1:80307359-80307378 Msa1217790:CDS 60.0%
CCACAACCTGACCTGGACTC+TGG - chr8_1:80307394-80307413 None:intergenic 60.0%
! CCAGAGTCCAGGTCAGGTTG+TGG + chr8_1:80307391-80307410 Msa1217790:CDS 60.0%
ACTTGCCCCACAACCTGACC+TGG - chr8_1:80307401-80307420 None:intergenic 60.0%
TCACCGGAGAAGTCTCCGGC+TGG + chr8_1:80307200-80307219 Msa1217790:CDS 65.0%
CCACCAGCCGGAGACTTCTC+CGG - chr8_1:80307206-80307225 None:intergenic 65.0%
TCCTGCCCCTTACCACCAGC+CGG - chr8_1:80307218-80307237 None:intergenic 65.0%
TCACCGGAGAAGTCTCCGGC+TGG + chr8_1:80307200-80307219 Msa1217790:CDS 65.0%
CCACCAGCCGGAGACTTCTC+CGG - chr8_1:80307206-80307225 None:intergenic 65.0%
TCCTGCCCCTTACCACCAGC+CGG - chr8_1:80307218-80307237 None:intergenic 65.0%
CCGGAGAAGTCTCCGGCTGG+TGG + chr8_1:80307203-80307222 Msa1217790:CDS 70.0%
TCCGGCTGGTGGTAAGGGGC+AGG + chr8_1:80307214-80307233 Msa1217790:CDS 70.0%
CCGGAGAAGTCTCCGGCTGG+TGG + chr8_1:80307203-80307222 Msa1217790:CDS 70.0%
TCCGGCTGGTGGTAAGGGGC+AGG + chr8_1:80307214-80307233 Msa1217790:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 80306068 80307880 80306068 ID=Msa1217790;Name=Msa1217790
chr8_1 mRNA 80306068 80307880 80306068 ID=Msa1217790-mRNA-1;Parent=Msa1217790;Name=Msa1217790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.66|1|1|1|3|204|366
chr8_1 exon 80306068 80306289 80306068 ID=Msa1217790-mRNA-1:exon:28101;Parent=Msa1217790-mRNA-1
chr8_1 exon 80306377 80306452 80306377 ID=Msa1217790-mRNA-1:exon:28102;Parent=Msa1217790-mRNA-1
chr8_1 exon 80306874 80307880 80306874 ID=Msa1217790-mRNA-1:exon:28103;Parent=Msa1217790-mRNA-1
chr8_1 CDS 80306068 80306289 80306068 ID=Msa1217790-mRNA-1:cds;Parent=Msa1217790-mRNA-1
chr8_1 CDS 80306377 80306452 80306377 ID=Msa1217790-mRNA-1:cds;Parent=Msa1217790-mRNA-1
chr8_1 CDS 80306874 80307676 80306874 ID=Msa1217790-mRNA-1:cds;Parent=Msa1217790-mRNA-1
chr8_1 three_prime_UTR 80307677 80307880 80307677 ID=Msa1217790-mRNA-1:three_prime_utr;Parent=Msa1217790-mRNA-1
Gene Sequence

>Msa1217790

ATGAGTGATATTGAAGGGGCAGAGGAAAGCAGCAGAAGGAGCAGTGTGTTATTGGGTCATTGTCACATTATACTACTTTGGTACCCATCTTGGCTTGTTTCCTTTGTTTTCTTGGCATTTTCCTCTTCTCACTTTCATTTTGATTTCAAGTTTCCAATTCCCTCTCACTCTCCCTACCACTTCTTTCTAATGGATGCTACCTCACAACCTTTGAAGTATCAGACATGGTTCTTGAAAGTTTCTATCCACTGTGAAGGTTGCAGAAGGAAAGTAAAGAAAGTTCTTCAGAGCATTGATGGAGTTTTTACTACAACAATCGACCCACAACAGAATAAAGTAACAGTCACCGGAAATGCTGCTCTTGAGACTCTGATAAGGAAACTTGCCAAAGCTGGAAAACACGCCGAGGTTTTGCCGGAGAATCTTCCCGGGAAAGTAAAGGATTCCAACAAAGCTAAGAACAATAAGAACAGTGAACAAAAAAACCAAGAAACTCAGCAAAAGAAAAACCATTCTTCTGCAAATACTGAACCCAACCTCAACTCTGGCAAAGACAATGGAATTGAAAATGCTGAAAAGAGTAACGGTAAAAGCAAGAGTACTAACACAAAAACCAATGCAGGCTCACCGGAGAAGTCTCCGGCTGGTGGTAAGGGGCAGGAAACAAAGAACAAGAGTGGTCAAAGTGACGGAGGAGATTCTGGTAAGAAGAAGATGAAGAAAACTCAGAGTGGTGGTGGAACTGGAACTGGTACTGGAAGCAATGGGTTGAATTCAGCATCTACTGGTGCACCTGCACACACTGGAACAGAATTCCAGAGTCCAGGTCAGGTTGTGGGGCAAGTGAATCTCAGCCCTACACGTCAGCAATCGTACATGTTGTATCCAGAAACATGTTATCCTCCTTTGGTACAGTTACAGTATGCAACTTACAACAGATTATGTCCCATGGGAACAATGGGTTGTCCTTCTTACTATGTTCCACCATTACCCTACATGTGTGCAGGCTTTGATCGTGACCCTTATCAGTTTCAATCTACACCTTTGATTCCCTTTGAGTTCTTCAGTGATGAAAATGCAAATGGGTGTTCTATTATGTGA
Protein sequence

>Msa1217790

MSDIEGAEESSRRSSVLLGHCHIILLWYPSWLVSFVFLAFSSSHFHFDFKFPIPSHSPYHFFLMDATSQPLKYQTWFLKVSIHCEGCRRKVKKVLQSIDGVFTTTIDPQQNKVTVTGNAALETLIRKLAKAGKHAEVLPENLPGKVKDSNKAKNNKNSEQKNQETQQKKNHSSANTEPNLNSGKDNGIENAEKSNGKSKSTNTKTNAGSPEKSPAGGKGQETKNKSGQSDGGDSGKKKMKKTQSGGGTGTGTGSNGLNSASTGAPAHTGTEFQSPGQVVGQVNLSPTRQQSYMLYPETCYPPLVQLQYATYNRLCPMGTMGCPSYYVPPLPYMCAGFDRDPYQFQSTPLIPFEFFSDENANGCSIM*