AlfalfaGEDB | Msa1217920

M. sativa cultivar zhongmu-4 / Msa1217920

KEGG: K10527
GO: GO:0003674 GO:0003824 GO:0003857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016508 GO:0016614 GO:0016616 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0030312 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055044 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072329 GO:1901575
PFAM: PF00378.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217920	sp\|Q39659\|MFPA_CUCSA	77.593	723	161	1	2	723	3	725	0.0	1177

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217920	G7JLJ7	98.617	723	10	0	1	723	1	723	0.0	1454

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0304840	Msa1217920	0.801139	1.036517e-48	-8.615850e-47
Msa0481130	Msa1217920	0.989593	8.585683e-179	-8.615850e-47
Msa1217920	Msa1348850	0.818213	2.204697e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217920	MtrunA17_Chr4g0067521	98.617	723	10	0	1	723	1	723	0.0	1454
Msa1217920	MtrunA17_Chr2g0295671	82.058	719	129	0	5	723	3	721	0.0	1217
Msa1217920	MtrunA17_Chr6g0485841	58.748	703	288	1	12	714	10	710	0.0	843
Msa1217920	MtrunA17_Chr8g0360311	31.560	282	186	5	310	587	4	282	8.70e-33	128
Msa1217920	MtrunA17_Chr4g0055741	35.714	196	117	5	12	202	48	239	9.81e-25	105
Msa1217920	MtrunA17_Chr4g0068451	30.244	205	126	4	1	199	1	194	3.15e-20	91.3
Msa1217920	MtrunA17_Chr3g0122861	29.341	167	111	2	23	182	24	190	3.66e-17	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217920	AT3G06860.1	76.552	725	168	2	1	723	1	725	0.0	1146
Msa1217920	AT4G29010.1	56.033	721	316	1	3	723	2	721	0.0	823
Msa1217920	AT3G15290.1	29.210	291	198	4	310	594	4	292	4.56e-33	129
Msa1217920	AT3G15290.2	28.936	235	159	4	366	594	1	233	6.30e-25	104
Msa1217920	AT4G16800.1	33.673	196	125	3	13	205	50	243	4.71e-24	103
Msa1217920	AT5G43280.2	29.897	194	124	2	1	182	3	196	4.15e-20	90.1
Msa1217920	AT5G43280.1	29.897	194	124	2	1	182	3	196	1.69e-19	89.7
Msa1217920	AT4G16210.1	27.861	201	129	3	16	210	18	208	5.30e-18	85.1

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Find 237 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGATAAAGAAAACTC+CGG	0.612409	8_1:-80455772	Msa1217920:CDS
AAAGCATCCTTTCCTTTCAC+TGG	0.469848	8_1:+80458042	None:intergenic
AAAGGCACTTGAAATGATGT+TGG	0.628694	8_1:-80458367	Msa1217920:intron
AACAAGTCAACTATTACTTG+AGG	0.620177	8_1:+80455804	None:intergenic
AACCAAATTTGGAATGCCCA+TGG	0.549285	8_1:-80455634	Msa1217920:CDS
AACCAGAGGATGCTTGAGAT+TGG	0.409821	8_1:+80457828	None:intergenic
AACCTTCCAGAGACCAGCAC+GGG	0.535190	8_1:+80457768	None:intergenic
AACTGTTGTCAGGGTTGGAT+TGG	0.420982	8_1:-80452796	Msa1217920:three_prime_UTR
AAGAAAACTCCGGTGGTGGT+TGG	0.522933	8_1:-80455762	Msa1217920:CDS
AAGAAGGTTGCCATCCTTGG+TGG	0.541758	8_1:-80456586	Msa1217920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAAATGAGTAGCAGAAA+AGG	-	chr8_1:80452941-80452960	Msa1217920:three_prime_UTR	30.0%
TCAAAATGAGTAGCAGAAAA+GGG	-	chr8_1:80452942-80452961	Msa1217920:three_prime_UTR	30.0%
AAAATGGAAGAAGGAAAATG+AGG	+	chr8_1:80453067-80453086	None:intergenic	30.0%
GATATAAGAAAATGCTACAC+AGG	-	chr8_1:80453284-80453303	Msa1217920:three_prime_UTR	30.0%
TAAGACAATAAGCTGAAAAC+AGG	+	chr8_1:80453434-80453453	None:intergenic	30.0%
TGGATAAACAACTTATTTGC+AGG	+	chr8_1:80453580-80453599	None:intergenic	30.0%
ATCAGTGTATTGTTGGAAAT+TGG	+	chr8_1:80453705-80453724	None:intergenic	30.0%
AAACAACATCAGTGTATTGT+TGG	+	chr8_1:80453712-80453731	None:intergenic	30.0%
TATTTAATGAATGAGGTGGA+TGG	-	chr8_1:80453806-80453825	Msa1217920:intron	30.0%
ATGTCCATTGAAGTTAACTT+TGG	-	chr8_1:80453941-80453960	Msa1217920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	80452794	80461275	80452794	ID=Msa1217920;Name=Msa1217920
chr8_1	mRNA	80452794	80461275	80452794	ID=Msa1217920-mRNA-1;Parent=Msa1217920;Name=Msa1217920-mRNA-1;_AED=0.09;_eAED=0.09;_QI=153\|1\|1\|1\|0.94\|0.89\|19\|606\|723
chr8_1	exon	80452794	80452978	80452794	ID=Msa1217920-mRNA-1:exon:28215;Parent=Msa1217920-mRNA-1
chr8_1	exon	80453103	80453559	80453103	ID=Msa1217920-mRNA-1:exon:28214;Parent=Msa1217920-mRNA-1
chr8_1	exon	80454681	80454819	80454681	ID=Msa1217920-mRNA-1:exon:28213;Parent=Msa1217920-mRNA-1
chr8_1	exon	80454896	80455044	80454896	ID=Msa1217920-mRNA-1:exon:28212;Parent=Msa1217920-mRNA-1
chr8_1	exon	80455172	80455293	80455172	ID=Msa1217920-mRNA-1:exon:28211;Parent=Msa1217920-mRNA-1
chr8_1	exon	80455423	80455544	80455423	ID=Msa1217920-mRNA-1:exon:28210;Parent=Msa1217920-mRNA-1
chr8_1	exon	80455624	80455878	80455624	ID=Msa1217920-mRNA-1:exon:28209;Parent=Msa1217920-mRNA-1
chr8_1	exon	80455954	80456117	80455954	ID=Msa1217920-mRNA-1:exon:28208;Parent=Msa1217920-mRNA-1
chr8_1	exon	80456245	80456366	80456245	ID=Msa1217920-mRNA-1:exon:28207;Parent=Msa1217920-mRNA-1
chr8_1	exon	80456476	80456650	80456476	ID=Msa1217920-mRNA-1:exon:28206;Parent=Msa1217920-mRNA-1
chr8_1	exon	80457602	80457688	80457602	ID=Msa1217920-mRNA-1:exon:28205;Parent=Msa1217920-mRNA-1
chr8_1	exon	80457771	80458073	80457771	ID=Msa1217920-mRNA-1:exon:28204;Parent=Msa1217920-mRNA-1
chr8_1	exon	80458368	80458423	80458368	ID=Msa1217920-mRNA-1:exon:28203;Parent=Msa1217920-mRNA-1
chr8_1	exon	80459072	80459153	80459072	ID=Msa1217920-mRNA-1:exon:28202;Parent=Msa1217920-mRNA-1
chr8_1	exon	80459233	80459300	80459233	ID=Msa1217920-mRNA-1:exon:28201;Parent=Msa1217920-mRNA-1
chr8_1	exon	80459381	80459434	80459381	ID=Msa1217920-mRNA-1:exon:28200;Parent=Msa1217920-mRNA-1
chr8_1	exon	80459518	80459583	80459518	ID=Msa1217920-mRNA-1:exon:28199;Parent=Msa1217920-mRNA-1
chr8_1	exon	80459831	80459902	80459831	ID=Msa1217920-mRNA-1:exon:28198;Parent=Msa1217920-mRNA-1
chr8_1	exon	80461023	80461275	80461023	ID=Msa1217920-mRNA-1:exon:28197;Parent=Msa1217920-mRNA-1
chr8_1	five_prime_UTR	80461123	80461275	80461123	ID=Msa1217920-mRNA-1:five_prime_utr;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80461023	80461122	80461023	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80459831	80459902	80459831	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80459518	80459583	80459518	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80459381	80459434	80459381	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80459233	80459300	80459233	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80459072	80459153	80459072	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80458368	80458423	80458368	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80457771	80458073	80457771	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80457602	80457688	80457602	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80456476	80456650	80456476	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80456245	80456366	80456245	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80455954	80456117	80455954	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80455624	80455878	80455624	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80455423	80455544	80455423	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80455172	80455293	80455172	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80454896	80455044	80454896	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80454681	80454819	80454681	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	CDS	80453524	80453559	80453524	ID=Msa1217920-mRNA-1:cds;Parent=Msa1217920-mRNA-1
chr8_1	three_prime_UTR	80453103	80453523	80453103	ID=Msa1217920-mRNA-1:three_prime_utr;Parent=Msa1217920-mRNA-1
chr8_1	three_prime_UTR	80452794	80452978	80452794	ID=Msa1217920-mRNA-1:three_prime_utr;Parent=Msa1217920-mRNA-1

Gene Sequence

>Msa1217920

ATGAGTAGCAGAAAAGGGCACACGGTTATGAATGTTGGAGCTGATGGAGTTGCCATCATCACCATCATCAATCCTCCCGTCAATTCTCTCTCCTTTGATGTATTGCGAAGTTTAAAGGAGAGTTTTGATCAGGCTATACAAAGAGATGACGTCAAGGCAATTGTTGTTACAGGTGCAAAGGGAAAATTTTCTGGAGGTTTTGATATTTCTGCATTTGGTGGTCTTCAAGAGTCAAAAGAGCGTCCAAAACCTGGGTGGATATCGATTGAAATCATCACTGATACAATAGAAGCGGCAAAGAAACCCTCAGTTGCTGCCATTGATGGCCTTGCCTTGGGTGGGGGCTTAGAAGTTGCAATGGCATGCAACGCACGATTATCAACTGCAACTGCTCAACTAGGTCTGCCTGAACTTCAGCTTGGGATAATTCCTGGATTTGGAGGAACACAGCGACTTCCTCGTCTTGTTGGTCTGACAAAGGCACTTGAAATGATGTTGACTTCCAAGCCAGTGAAAGGAAAGGATGCTTTTAGTTCGGGGCTTGTAGATGGTTTGGTGTCACCTGATCAGTTGATGAACACTGCACGCCAGTGGGCCCTGGATATTTTGGACCGTCGACGACCATGGATTACCAGTCTTTTCAAGACTGAAAAAATAGAACCACTTGGGGAAGCTAGAGAGATTTTGAAATTCGCACGTGCCCAAGCTCGAAAACAAGCTCCCAATCTCAAGCATCCTCTGGTTTGCATTGATGTTATTGAAGCAGGAATAGTGTCTGGTCCCCGTGCTGGTCTCTGGAAGGAAGCTGAAGCATTTGATGCACTGGTACAATCAGATACTTGCAAAAGCTTAATTCACATATTTTTTGCTCAAAGAGGAACATCTAAGGTGCCTGGGGTTACTGATCGTGGTCTGGTTCCAAGATCCGTGAAGAAGGTTGCCATCCTTGGTGGAGGACTAATGGGCTCTGGAATAGCAACAGCTTTAATACTTAGTAATTATTCTGTCATATTGAAAGAAGTAAATGAAAAATTCTTGGATGCTGGTATCAATAGGATTAAAGCAAACCTACAGAGCCGTGTTAAGAAAGGTAATTTAACCCAGGAAAAATTTGAAAAGGCATTCTCTCTTGTCAAAGGTTCCCTCGACTATGATAGCTTCAGAGATGTAGACATGGTGATAGAGGCTGTTATTGAGAATGTTTCCTTGAAGCAACAAATCTTTGCTGATCTTGAAAAGTACTGTCCACCTCATTGTATACTTGGTAGTAACACTTCCACAATTGACTTGGACCTGATCGGAGAAAAGACCAAGTCTCAAGATCGAATTATTGGAGCCCATTTCTTCAGTCCTGCACATGTTATGCCACTTCTGGAGATTGTACGTACCAAGCGGACATCTCCTCAAGTAATAGTTGACTTGTTAGATATTTCAAAGAAGATAAAGAAAACTCCGGTGGTGGTTGGAAACTGTACAGGATTTGCTGTTAATAGGGTGTTCTTCCCATATACACAAGCAACTCTCTTGCTTGTTGAACGTGGCGCAGATGTTTACCAAATTGATAAAGCAGTAACCAAATTTGGAATGCCCATGGGGCCTTTAAGATTGTGTGACCTTGTTGGTTTCGGTGTGGCGGTTGCAACCGGCTCCCAATTTGTTCAGAACTTTCCTGAGCGAACTTATAAATCAATGCTTATCCCTCTTTTGCAAGAGGATAAGAGGGCTGGCGAAACAACTCGAAAAGGCTTTTATTTGTATGATGATAGACGCAAGGCCAGTCCTGACCCTGAATTAAAGAAATTTATTGAGAAAGCTAGGAGCATTTCCGGTGTCTCCGTTGATCCAATGCTTGTCAAGTTACAAGAGAAGGACATCATTGAGATGATCTTCTTTCCTGTGGTGAATGAGGCTTGTCGTGTCCTCGATGAAGGTATTGTAGTCAAAGCAGCAGATCTTGATATTGCTGCTATCATGGGAATGGGTTTTCCACCTTACAGGGGAGGTATCATATTCTGGGCCGACTCTCTTGGATCTAAATACATATATTCAAGATTGGAGAAATGGTCAGAGTTGTATGGACCGTTCTTCAAGCCTTGTGCCTACTTGGCTGCAAGAGCTGCGAAAGGAATTCCTCTGGGAGCCTCAGTGGAGCAAGCTAAGTCACGGATGTAG

Protein sequence

>Msa1217920

MSSRKGHTVMNVGADGVAIITIINPPVNSLSFDVLRSLKESFDQAIQRDDVKAIVVTGAKGKFSGGFDISAFGGLQESKERPKPGWISIEIITDTIEAAKKPSVAAIDGLALGGGLEVAMACNARLSTATAQLGLPELQLGIIPGFGGTQRLPRLVGLTKALEMMLTSKPVKGKDAFSSGLVDGLVSPDQLMNTARQWALDILDRRRPWITSLFKTEKIEPLGEAREILKFARAQARKQAPNLKHPLVCIDVIEAGIVSGPRAGLWKEAEAFDALVQSDTCKSLIHIFFAQRGTSKVPGVTDRGLVPRSVKKVAILGGGLMGSGIATALILSNYSVILKEVNEKFLDAGINRIKANLQSRVKKGNLTQEKFEKAFSLVKGSLDYDSFRDVDMVIEAVIENVSLKQQIFADLEKYCPPHCILGSNTSTIDLDLIGEKTKSQDRIIGAHFFSPAHVMPLLEIVRTKRTSPQVIVDLLDISKKIKKTPVVVGNCTGFAVNRVFFPYTQATLLLVERGADVYQIDKAVTKFGMPMGPLRLCDLVGFGVAVATGSQFVQNFPERTYKSMLIPLLQEDKRAGETTRKGFYLYDDRRKASPDPELKKFIEKARSISGVSVDPMLVKLQEKDIIEMIFFPVVNEACRVLDEGIVVKAADLDIAAIMGMGFPPYRGGIIFWADSLGSKYIYSRLEKWSELYGPFFKPCAYLAARAAKGIPLGASVEQAKSRM*