Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220570 | XP_003610006.1 | 92.727 | 220 | 12 | 2 | 1 | 220 | 1 | 216 | 2.53e-135 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220570 | sp|P46604|HAT22_ARATH | 40.244 | 246 | 99 | 6 | 1 | 207 | 1 | 237 | 5.37e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1220570 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1220570 | Msa1334550 | 0.933702 | 1.254037e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220570 | MtrunA17_Chr4g0071411 | 92.727 | 220 | 12 | 2 | 1 | 220 | 1 | 216 | 2.33e-139 | 389 |
| Msa1220570 | MtrunA17_Chr8g0385491 | 83.495 | 103 | 13 | 2 | 1 | 103 | 83 | 181 | 6.00e-45 | 148 |
| Msa1220570 | MtrunA17_Chr5g0399491 | 53.741 | 147 | 58 | 2 | 61 | 207 | 112 | 248 | 1.22e-41 | 143 |
| Msa1220570 | MtrunA17_Chr5g0400781 | 63.077 | 130 | 36 | 4 | 80 | 207 | 115 | 234 | 1.29e-40 | 139 |
| Msa1220570 | MtrunA17_Chr4g0055851 | 55.000 | 140 | 54 | 2 | 80 | 213 | 102 | 238 | 2.31e-40 | 139 |
| Msa1220570 | MtrunA17_Chr8g0335131 | 63.248 | 117 | 40 | 1 | 91 | 207 | 145 | 258 | 3.04e-39 | 137 |
| Msa1220570 | MtrunA17_Chr1g0175651 | 49.367 | 158 | 70 | 3 | 50 | 207 | 118 | 265 | 1.30e-37 | 132 |
| Msa1220570 | MtrunA17_Chr7g0258831 | 48.101 | 158 | 73 | 2 | 50 | 207 | 123 | 271 | 2.06e-37 | 132 |
| Msa1220570 | MtrunA17_Chr4g0054421 | 60.684 | 117 | 42 | 2 | 91 | 207 | 126 | 238 | 4.95e-37 | 130 |
| Msa1220570 | MtrunA17_Chr2g0299031 | 43.478 | 207 | 95 | 5 | 11 | 215 | 15 | 201 | 5.41e-36 | 126 |
| Msa1220570 | MtrunA17_Chr2g0308611 | 53.623 | 138 | 49 | 3 | 79 | 204 | 187 | 321 | 6.19e-36 | 129 |
| Msa1220570 | MtrunA17_Chr1g0151971 | 60.345 | 116 | 44 | 2 | 91 | 206 | 129 | 242 | 1.81e-35 | 127 |
| Msa1220570 | MtrunA17_Chr4g0044091 | 49.206 | 126 | 58 | 3 | 86 | 207 | 59 | 182 | 8.66e-31 | 112 |
| Msa1220570 | MtrunA17_Chr3g0135331 | 51.587 | 126 | 48 | 3 | 86 | 207 | 139 | 255 | 3.95e-28 | 107 |
| Msa1220570 | MtrunA17_Chr7g0217111 | 48.864 | 88 | 45 | 0 | 91 | 178 | 79 | 166 | 2.98e-19 | 83.6 |
| Msa1220570 | MtrunA17_Chr3g0119291 | 47.368 | 95 | 43 | 1 | 92 | 179 | 59 | 153 | 4.72e-19 | 82.8 |
| Msa1220570 | MtrunA17_Chr8g0362751 | 48.936 | 94 | 41 | 1 | 92 | 178 | 89 | 182 | 9.16e-19 | 82.4 |
| Msa1220570 | MtrunA17_Chr5g0415941 | 46.809 | 94 | 43 | 1 | 92 | 178 | 87 | 180 | 1.77e-18 | 82.4 |
| Msa1220570 | MtrunA17_Chr7g0265521 | 42.453 | 106 | 61 | 0 | 73 | 178 | 44 | 149 | 2.00e-18 | 80.5 |
| Msa1220570 | MtrunA17_Chr6g0450991 | 48.387 | 93 | 41 | 1 | 92 | 177 | 67 | 159 | 6.63e-18 | 80.1 |
| Msa1220570 | MtrunA17_Chr6g0453021 | 47.872 | 94 | 42 | 1 | 92 | 178 | 96 | 189 | 1.36e-17 | 79.3 |
| Msa1220570 | MtrunA17_Chr8g0381741 | 38.931 | 131 | 66 | 2 | 91 | 214 | 53 | 176 | 1.81e-17 | 79.3 |
| Msa1220570 | MtrunA17_Chr8g0362151 | 46.591 | 88 | 47 | 0 | 92 | 179 | 77 | 164 | 2.02e-17 | 79.0 |
| Msa1220570 | MtrunA17_Chr5g0416391 | 45.455 | 88 | 48 | 0 | 92 | 179 | 77 | 164 | 8.99e-17 | 77.0 |
| Msa1220570 | MtrunA17_Chr3g0123691 | 40.385 | 104 | 53 | 2 | 82 | 178 | 52 | 153 | 1.85e-15 | 73.6 |
| Msa1220570 | MtrunA17_Chr1g0179581 | 38.318 | 107 | 65 | 1 | 68 | 174 | 5 | 110 | 2.56e-15 | 69.3 |
| Msa1220570 | MtrunA17_Chr4g0060031 | 45.161 | 93 | 44 | 1 | 92 | 177 | 95 | 187 | 1.01e-14 | 72.0 |
| Msa1220570 | MtrunA17_Chr8g0346251 | 35.246 | 122 | 72 | 1 | 65 | 179 | 7 | 128 | 2.80e-13 | 67.0 |
| Msa1220570 | MtrunA17_Chr3g0127511 | 42.857 | 84 | 48 | 0 | 95 | 178 | 41 | 124 | 1.81e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220570 | AT4G37790.1 | 40.244 | 246 | 99 | 6 | 1 | 207 | 1 | 237 | 5.46e-41 | 141 |
| Msa1220570 | AT3G60390.1 | 58.779 | 131 | 50 | 3 | 78 | 207 | 147 | 274 | 1.27e-40 | 141 |
| Msa1220570 | AT4G16780.1 | 57.143 | 126 | 50 | 2 | 81 | 206 | 119 | 240 | 2.72e-38 | 134 |
| Msa1220570 | AT5G06710.1 | 52.593 | 135 | 50 | 2 | 78 | 207 | 176 | 301 | 9.20e-38 | 134 |
| Msa1220570 | AT2G22800.1 | 39.316 | 234 | 105 | 6 | 1 | 207 | 1 | 224 | 2.59e-36 | 129 |
| Msa1220570 | AT5G47370.1 | 50.704 | 142 | 65 | 2 | 78 | 217 | 116 | 254 | 5.43e-36 | 128 |
| Msa1220570 | AT2G44910.1 | 58.120 | 117 | 46 | 1 | 91 | 207 | 162 | 275 | 1.05e-35 | 128 |
| Msa1220570 | AT4G17460.1 | 43.275 | 171 | 78 | 3 | 47 | 217 | 106 | 257 | 3.01e-35 | 126 |
| Msa1220570 | AT1G70920.1 | 42.958 | 142 | 68 | 2 | 67 | 207 | 44 | 173 | 2.62e-28 | 106 |
| Msa1220570 | AT1G70920.2 | 42.958 | 142 | 68 | 2 | 67 | 207 | 14 | 143 | 2.67e-28 | 105 |
| Msa1220570 | AT2G01430.1 | 46.667 | 135 | 61 | 2 | 78 | 207 | 120 | 248 | 4.17e-28 | 107 |
| Msa1220570 | AT5G06710.4 | 59.155 | 71 | 29 | 0 | 73 | 143 | 171 | 241 | 9.28e-22 | 90.9 |
| Msa1220570 | AT1G26960.1 | 40.000 | 120 | 71 | 1 | 61 | 179 | 39 | 158 | 9.34e-19 | 82.4 |
| Msa1220570 | AT1G69780.1 | 48.864 | 88 | 45 | 0 | 92 | 179 | 85 | 172 | 1.51e-17 | 79.7 |
| Msa1220570 | AT3G01470.1 | 48.387 | 93 | 41 | 2 | 92 | 177 | 68 | 160 | 6.10e-17 | 77.8 |
| Msa1220570 | AT3G01220.1 | 50.633 | 79 | 39 | 0 | 92 | 170 | 87 | 165 | 7.53e-17 | 77.8 |
| Msa1220570 | AT2G01430.2 | 48.864 | 88 | 38 | 2 | 78 | 160 | 120 | 205 | 7.70e-17 | 76.3 |
| Msa1220570 | AT5G15150.1 | 48.936 | 94 | 41 | 1 | 92 | 178 | 115 | 208 | 2.03e-16 | 76.6 |
| Msa1220570 | AT2G46680.2 | 43.158 | 95 | 50 | 1 | 83 | 177 | 27 | 117 | 5.85e-16 | 74.7 |
| Msa1220570 | AT2G46680.1 | 43.158 | 95 | 50 | 1 | 83 | 177 | 27 | 117 | 6.58e-16 | 74.7 |
| Msa1220570 | AT5G65310.1 | 43.158 | 95 | 47 | 1 | 92 | 179 | 72 | 166 | 1.55e-15 | 74.3 |
| Msa1220570 | AT5G65310.2 | 43.158 | 95 | 47 | 1 | 92 | 179 | 54 | 148 | 1.76e-15 | 73.9 |
| Msa1220570 | AT5G03790.1 | 42.708 | 96 | 55 | 0 | 85 | 180 | 70 | 165 | 1.94e-15 | 73.2 |
| Msa1220570 | AT4G40060.1 | 44.086 | 93 | 48 | 1 | 92 | 180 | 59 | 151 | 5.30e-15 | 72.8 |
| Msa1220570 | AT2G22430.1 | 44.211 | 95 | 46 | 1 | 92 | 179 | 62 | 156 | 6.59e-15 | 72.4 |
| Msa1220570 | AT5G03790.2 | 44.444 | 90 | 50 | 0 | 85 | 174 | 70 | 159 | 3.72e-14 | 68.6 |
| Msa1220570 | AT3G61890.1 | 40.964 | 83 | 49 | 0 | 95 | 177 | 33 | 115 | 2.26e-13 | 67.4 |
| Msa1220570 | AT2G36610.1 | 38.596 | 114 | 62 | 2 | 75 | 180 | 54 | 167 | 6.65e-13 | 65.1 |
| Msa1220570 | AT4G36740.2 | 40.625 | 96 | 57 | 0 | 83 | 178 | 47 | 142 | 5.79e-12 | 63.2 |
| Msa1220570 | AT4G36740.1 | 40.625 | 96 | 57 | 0 | 83 | 178 | 46 | 141 | 6.01e-12 | 63.2 |
| Msa1220570 | AT2G18550.1 | 38.679 | 106 | 63 | 1 | 73 | 178 | 44 | 147 | 6.03e-12 | 63.2 |
| Msa1220570 | AT5G53980.1 | 43.333 | 90 | 49 | 2 | 90 | 178 | 9 | 97 | 6.03e-12 | 62.0 |
| Msa1220570 | AT5G66700.1 | 45.833 | 72 | 39 | 0 | 92 | 163 | 71 | 142 | 2.50e-11 | 61.6 |
| Msa1220570 | AT1G27045.4 | 41.935 | 93 | 47 | 1 | 92 | 177 | 68 | 160 | 8.45e-11 | 60.5 |
Find 34 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGTGAAAGATTCAATT+TGG | 0.267895 | 8_1:+83751553 | Msa1220570:CDS |
| ACGTTCATAGGTTCTCCTTT+TGG | 0.352374 | 8_1:-83751509 | None:intergenic |
| TTGAGGTTTGGTTTCAGAAC+AGG | 0.362659 | 8_1:+83752083 | Msa1220570:CDS |
| GTCTTGTCTTTAACCTCAAT+TGG | 0.365222 | 8_1:-83752057 | None:intergenic |
| TTGTTGTTGTGTACGTTCAT+AGG | 0.371543 | 8_1:-83751521 | None:intergenic |
| TCTACGATCGTTGTTGTTGT+TGG | 0.376794 | 8_1:-83751627 | None:intergenic |
| AAGATTAAAGAAGGAATTGC+AGG | 0.404223 | 8_1:+83752439 | Msa1220570:CDS |
| AGACAAGACAAATTGAGGTT+TGG | 0.409339 | 8_1:+83752071 | Msa1220570:CDS |
| ACAGGTTTATGTCTAGGTCT+TGG | 0.420666 | 8_1:+83751401 | Msa1220570:CDS |
| TTATGTCTAGGTCTTGGAAT+AGG | 0.424289 | 8_1:+83751407 | Msa1220570:CDS |
| TTGCAGGAACTCAAAGTTGT+TGG | 0.456628 | 8_1:+83752455 | Msa1220570:CDS |
| TAGCACTTGCTGACCAATTG+AGG | 0.458161 | 8_1:+83752044 | Msa1220570:CDS |
| GCATTCTTCATCACTTTCCA+TGG | 0.470187 | 8_1:-83751375 | None:intergenic |
| GTTAAAGACAAGACAAATTG+AGG | 0.472426 | 8_1:+83752066 | Msa1220570:CDS |
| ATACCGGATTAAGAGTGTTA+TGG | 0.475608 | 8_1:-83751706 | None:intergenic |
| AGTGATGAAGAATGCAATAC+AGG | 0.485322 | 8_1:+83751383 | Msa1220570:CDS |
| GCTCCATAACACTCTTAATC+CGG | 0.495490 | 8_1:+83751703 | Msa1220570:CDS |
| AAGAGTGTTATGGAGCTTGA+AGG | 0.507942 | 8_1:-83751696 | None:intergenic |
| TTGGACAAAGCTCAAAAGCT+AGG | 0.524782 | 8_1:-83751490 | None:intergenic |
| GACTAAGCTGAAGCAGATAG+AGG | 0.526640 | 8_1:+83752364 | Msa1220570:CDS |
| TGAGAACAAAAGATTAAAGA+AGG | 0.527592 | 8_1:+83752430 | Msa1220570:CDS |
| TGATCTTCATTATGCTTCAA+CGG | 0.537154 | 8_1:-83752560 | None:intergenic |
| TGCAATACAGGTTTATGTCT+AGG | 0.537810 | 8_1:+83751395 | Msa1220570:CDS |
| CTTGAAGGTGCTCTCAAGCA+TGG | 0.539476 | 8_1:-83751681 | None:intergenic |
| GATAAACGTTGAGGGCATAA+CGG | 0.556727 | 8_1:-83752485 | None:intergenic |
| GGTTTCAGAACAGGAGAGCA+AGG | 0.572572 | 8_1:+83752092 | Msa1220570:CDS |
| ATTAGTGAATAAATCTGTGA+TGG | 0.573054 | 8_1:+83751454 | Msa1220570:CDS |
| TCTTGGAATAGGTGCAACAA+AGG | 0.613459 | 8_1:+83751418 | Msa1220570:CDS |
| ACAGTACTATGAGTCACCAC+TGG | 0.648715 | 8_1:-83752515 | None:intergenic |
| TAAGCTGAAGCAGATAGAGG+TGG | 0.656332 | 8_1:+83752367 | Msa1220570:CDS |
| AAAGAAACTGAGGCTAACAA+AGG | 0.656758 | 8_1:+83751649 | Msa1220570:CDS |
| TCAAAAGCTAGGTCAAAACA+AGG | 0.669862 | 8_1:-83751479 | None:intergenic |
| ACGTTTATCATCAAAACCAG+TGG | 0.690620 | 8_1:+83752499 | Msa1220570:CDS |
| ACGATCGTAGAAAGAAACTG+AGG | 0.720750 | 8_1:+83751639 | Msa1220570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTATTATTTTTAA+TGG | + | chr8_1:83751889-83751908 | Msa1220570:intron | 0.0% |
| !!! | ATTATTATTATTATTTTTAA+TGG | + | chr8_1:83751889-83751908 | Msa1220570:intron | 0.0% |
| !!! | TACATATTATAGAGAATTTT+TGG | - | chr8_1:83751749-83751768 | None:intergenic | 15.0% |
| !!! | TAATTTTTCTTCATATTATC+TGG | + | chr8_1:83752185-83752204 | Msa1220570:intron | 15.0% |
| !!! | AATTTTTCTTCATATTATCT+GGG | + | chr8_1:83752186-83752205 | Msa1220570:intron | 15.0% |
| !! | TACAACAATTTATAAACTAA+TGG | - | chr8_1:83752326-83752345 | None:intergenic | 15.0% |
| !! | TGTATTTATTTATATAACAC+AGG | + | chr8_1:83752342-83752361 | Msa1220570:intron | 15.0% |
| !!! | TACATATTATAGAGAATTTT+TGG | - | chr8_1:83751749-83751768 | None:intergenic | 15.0% |
| !!! | TAATTTTTCTTCATATTATC+TGG | + | chr8_1:83752185-83752204 | Msa1220570:intron | 15.0% |
| !!! | AATTTTTCTTCATATTATCT+GGG | + | chr8_1:83752186-83752205 | Msa1220570:intron | 15.0% |
| !! | TACAACAATTTATAAACTAA+TGG | - | chr8_1:83752326-83752345 | None:intergenic | 15.0% |
| !! | TGTATTTATTTATATAACAC+AGG | + | chr8_1:83752342-83752361 | Msa1220570:intron | 15.0% |
| !!! | ACGTTACATTTTGATAATAT+TGG | - | chr8_1:83751586-83751605 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTTCTATATGACA+AGG | + | chr8_1:83751966-83751985 | Msa1220570:intron | 20.0% |
| !!! | TTAGTTTTTCTATATGACAA+GGG | + | chr8_1:83751967-83751986 | Msa1220570:intron | 20.0% |
| !!! | ACGTTACATTTTGATAATAT+TGG | - | chr8_1:83751586-83751605 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTTCTATATGACA+AGG | + | chr8_1:83751966-83751985 | Msa1220570:intron | 20.0% |
| !!! | TTAGTTTTTCTATATGACAA+GGG | + | chr8_1:83751967-83751986 | Msa1220570:intron | 20.0% |
| ! | ATTAGTGAATAAATCTGTGA+TGG | + | chr8_1:83751454-83751473 | Msa1220570:CDS | 25.0% |
| !! | TTTTGGTATGAATGAATGAA+TGG | - | chr8_1:83751732-83751751 | None:intergenic | 25.0% |
| ! | TGTCATATTGTGTATGTATA+AGG | + | chr8_1:83751791-83751810 | Msa1220570:intron | 25.0% |
| !!! | TTTTGGTTTCATATATATGC+AGG | + | chr8_1:83752012-83752031 | Msa1220570:intron | 25.0% |
| ! | TGAGAACAAAAGATTAAAGA+AGG | + | chr8_1:83752430-83752449 | Msa1220570:CDS | 25.0% |
| ! | ATTAGTGAATAAATCTGTGA+TGG | + | chr8_1:83751454-83751473 | Msa1220570:CDS | 25.0% |
| !! | TTTTGGTATGAATGAATGAA+TGG | - | chr8_1:83751732-83751751 | None:intergenic | 25.0% |
| ! | TGTCATATTGTGTATGTATA+AGG | + | chr8_1:83751791-83751810 | Msa1220570:intron | 25.0% |
| !!! | TTTTGGTTTCATATATATGC+AGG | + | chr8_1:83752012-83752031 | Msa1220570:intron | 25.0% |
| ! | TGAGAACAAAAGATTAAAGA+AGG | + | chr8_1:83752430-83752449 | Msa1220570:CDS | 25.0% |
| CAAAGGTGAAAGATTCAATT+TGG | + | chr8_1:83751553-83751572 | Msa1220570:CDS | 30.0% | |
| ATGAATGAATGAATGGATAC+CGG | - | chr8_1:83751725-83751744 | None:intergenic | 30.0% | |
| GTTAAAGACAAGACAAATTG+AGG | + | chr8_1:83752066-83752085 | Msa1220570:CDS | 30.0% | |
| ! | CTATATGTTGATATCGATTG+CGG | + | chr8_1:83752268-83752287 | Msa1220570:intron | 30.0% |
| AAGATTAAAGAAGGAATTGC+AGG | + | chr8_1:83752439-83752458 | Msa1220570:CDS | 30.0% | |
| !! | GTTTTGATGATAAACGTTGA+GGG | - | chr8_1:83752496-83752515 | None:intergenic | 30.0% |
| TGATCTTCATTATGCTTCAA+CGG | - | chr8_1:83752563-83752582 | None:intergenic | 30.0% | |
| CAAAGGTGAAAGATTCAATT+TGG | + | chr8_1:83751553-83751572 | Msa1220570:CDS | 30.0% | |
| ATGAATGAATGAATGGATAC+CGG | - | chr8_1:83751725-83751744 | None:intergenic | 30.0% | |
| GTTAAAGACAAGACAAATTG+AGG | + | chr8_1:83752066-83752085 | Msa1220570:CDS | 30.0% | |
| ! | CTATATGTTGATATCGATTG+CGG | + | chr8_1:83752268-83752287 | Msa1220570:intron | 30.0% |
| AAGATTAAAGAAGGAATTGC+AGG | + | chr8_1:83752439-83752458 | Msa1220570:CDS | 30.0% | |
| !! | GTTTTGATGATAAACGTTGA+GGG | - | chr8_1:83752496-83752515 | None:intergenic | 30.0% |
| TGATCTTCATTATGCTTCAA+CGG | - | chr8_1:83752563-83752582 | None:intergenic | 30.0% | |
| AGTGATGAAGAATGCAATAC+AGG | + | chr8_1:83751383-83751402 | Msa1220570:CDS | 35.0% | |
| TGCAATACAGGTTTATGTCT+AGG | + | chr8_1:83751395-83751414 | Msa1220570:CDS | 35.0% | |
| TTATGTCTAGGTCTTGGAAT+AGG | + | chr8_1:83751407-83751426 | Msa1220570:CDS | 35.0% | |
| TCAAAAGCTAGGTCAAAACA+AGG | - | chr8_1:83751482-83751501 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTGTACGTTCAT+AGG | - | chr8_1:83751524-83751543 | None:intergenic | 35.0% |
| AACAACAACAACAACAGCAA+AGG | + | chr8_1:83751536-83751555 | Msa1220570:CDS | 35.0% | |
| AAAGAAACTGAGGCTAACAA+AGG | + | chr8_1:83751649-83751668 | Msa1220570:CDS | 35.0% | |
| !! | ATACCGGATTAAGAGTGTTA+TGG | - | chr8_1:83751709-83751728 | None:intergenic | 35.0% |
| GTAGAAATGAGTTTATGCGT+TGG | + | chr8_1:83751989-83752008 | Msa1220570:intron | 35.0% | |
| !!! | ATGAGTTTATGCGTTGGTTT+TGG | + | chr8_1:83751995-83752014 | Msa1220570:intron | 35.0% |
| GTCTTGTCTTTAACCTCAAT+TGG | - | chr8_1:83752060-83752079 | None:intergenic | 35.0% | |
| AGACAAGACAAATTGAGGTT+TGG | + | chr8_1:83752071-83752090 | Msa1220570:CDS | 35.0% | |
| !! | GGTTTTGATGATAAACGTTG+AGG | - | chr8_1:83752497-83752516 | None:intergenic | 35.0% |
| ACGTTTATCATCAAAACCAG+TGG | + | chr8_1:83752499-83752518 | Msa1220570:CDS | 35.0% | |
| AGTGATGAAGAATGCAATAC+AGG | + | chr8_1:83751383-83751402 | Msa1220570:CDS | 35.0% | |
| TGCAATACAGGTTTATGTCT+AGG | + | chr8_1:83751395-83751414 | Msa1220570:CDS | 35.0% | |
| TTATGTCTAGGTCTTGGAAT+AGG | + | chr8_1:83751407-83751426 | Msa1220570:CDS | 35.0% | |
| TCAAAAGCTAGGTCAAAACA+AGG | - | chr8_1:83751482-83751501 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTGTACGTTCAT+AGG | - | chr8_1:83751524-83751543 | None:intergenic | 35.0% |
| AACAACAACAACAACAGCAA+AGG | + | chr8_1:83751536-83751555 | Msa1220570:CDS | 35.0% | |
| AAAGAAACTGAGGCTAACAA+AGG | + | chr8_1:83751649-83751668 | Msa1220570:CDS | 35.0% | |
| !! | ATACCGGATTAAGAGTGTTA+TGG | - | chr8_1:83751709-83751728 | None:intergenic | 35.0% |
| GTAGAAATGAGTTTATGCGT+TGG | + | chr8_1:83751989-83752008 | Msa1220570:intron | 35.0% | |
| !!! | ATGAGTTTATGCGTTGGTTT+TGG | + | chr8_1:83751995-83752014 | Msa1220570:intron | 35.0% |
| GTCTTGTCTTTAACCTCAAT+TGG | - | chr8_1:83752060-83752079 | None:intergenic | 35.0% | |
| AGACAAGACAAATTGAGGTT+TGG | + | chr8_1:83752071-83752090 | Msa1220570:CDS | 35.0% | |
| !! | GGTTTTGATGATAAACGTTG+AGG | - | chr8_1:83752497-83752516 | None:intergenic | 35.0% |
| ACGTTTATCATCAAAACCAG+TGG | + | chr8_1:83752499-83752518 | Msa1220570:CDS | 35.0% | |
| ACAGGTTTATGTCTAGGTCT+TGG | + | chr8_1:83751401-83751420 | Msa1220570:CDS | 40.0% | |
| TCTTGGAATAGGTGCAACAA+AGG | + | chr8_1:83751418-83751437 | Msa1220570:CDS | 40.0% | |
| TTGGACAAAGCTCAAAAGCT+AGG | - | chr8_1:83751493-83751512 | None:intergenic | 40.0% | |
| !! | GCTTTTGAGCTTTGTCCAAA+AGG | + | chr8_1:83751494-83751513 | Msa1220570:CDS | 40.0% |
| ! | ACGTTCATAGGTTCTCCTTT+TGG | - | chr8_1:83751512-83751531 | None:intergenic | 40.0% |
| ! | TCTACGATCGTTGTTGTTGT+TGG | - | chr8_1:83751630-83751649 | None:intergenic | 40.0% |
| ACGATCGTAGAAAGAAACTG+AGG | + | chr8_1:83751639-83751658 | Msa1220570:CDS | 40.0% | |
| !! | AAGAGTGTTATGGAGCTTGA+AGG | - | chr8_1:83751699-83751718 | None:intergenic | 40.0% |
| GCTCCATAACACTCTTAATC+CGG | + | chr8_1:83751703-83751722 | Msa1220570:CDS | 40.0% | |
| ! | TTGAGGTTTGGTTTCAGAAC+AGG | + | chr8_1:83752083-83752102 | Msa1220570:CDS | 40.0% |
| TTGCAGGAACTCAAAGTTGT+TGG | + | chr8_1:83752455-83752474 | Msa1220570:CDS | 40.0% | |
| ! | GATAAACGTTGAGGGCATAA+CGG | - | chr8_1:83752488-83752507 | None:intergenic | 40.0% |
| ACAGGTTTATGTCTAGGTCT+TGG | + | chr8_1:83751401-83751420 | Msa1220570:CDS | 40.0% | |
| TCTTGGAATAGGTGCAACAA+AGG | + | chr8_1:83751418-83751437 | Msa1220570:CDS | 40.0% | |
| TTGGACAAAGCTCAAAAGCT+AGG | - | chr8_1:83751493-83751512 | None:intergenic | 40.0% | |
| !! | GCTTTTGAGCTTTGTCCAAA+AGG | + | chr8_1:83751494-83751513 | Msa1220570:CDS | 40.0% |
| ! | ACGTTCATAGGTTCTCCTTT+TGG | - | chr8_1:83751512-83751531 | None:intergenic | 40.0% |
| ! | TCTACGATCGTTGTTGTTGT+TGG | - | chr8_1:83751630-83751649 | None:intergenic | 40.0% |
| ACGATCGTAGAAAGAAACTG+AGG | + | chr8_1:83751639-83751658 | Msa1220570:CDS | 40.0% | |
| !! | AAGAGTGTTATGGAGCTTGA+AGG | - | chr8_1:83751699-83751718 | None:intergenic | 40.0% |
| GCTCCATAACACTCTTAATC+CGG | + | chr8_1:83751703-83751722 | Msa1220570:CDS | 40.0% | |
| ! | TTGAGGTTTGGTTTCAGAAC+AGG | + | chr8_1:83752083-83752102 | Msa1220570:CDS | 40.0% |
| TTGCAGGAACTCAAAGTTGT+TGG | + | chr8_1:83752455-83752474 | Msa1220570:CDS | 40.0% | |
| ! | GATAAACGTTGAGGGCATAA+CGG | - | chr8_1:83752488-83752507 | None:intergenic | 40.0% |
| ! | TAGCACTTGCTGACCAATTG+AGG | + | chr8_1:83752044-83752063 | Msa1220570:CDS | 45.0% |
| GACTAAGCTGAAGCAGATAG+AGG | + | chr8_1:83752364-83752383 | Msa1220570:CDS | 45.0% | |
| TAAGCTGAAGCAGATAGAGG+TGG | + | chr8_1:83752367-83752386 | Msa1220570:CDS | 45.0% | |
| ACAGTACTATGAGTCACCAC+TGG | - | chr8_1:83752518-83752537 | None:intergenic | 45.0% | |
| ! | TAGCACTTGCTGACCAATTG+AGG | + | chr8_1:83752044-83752063 | Msa1220570:CDS | 45.0% |
| GACTAAGCTGAAGCAGATAG+AGG | + | chr8_1:83752364-83752383 | Msa1220570:CDS | 45.0% | |
| TAAGCTGAAGCAGATAGAGG+TGG | + | chr8_1:83752367-83752386 | Msa1220570:CDS | 45.0% | |
| ACAGTACTATGAGTCACCAC+TGG | - | chr8_1:83752518-83752537 | None:intergenic | 45.0% | |
| !! | AATAAATACTAAAATTAAAT+AGG | - | chr8_1:83752232-83752251 | None:intergenic | 5.0% |
| !! | AATAAATACTAAAATTAAAT+AGG | - | chr8_1:83752232-83752251 | None:intergenic | 5.0% |
| !! | CTTGAAGGTGCTCTCAAGCA+TGG | - | chr8_1:83751684-83751703 | None:intergenic | 50.0% |
| GGTTTCAGAACAGGAGAGCA+AGG | + | chr8_1:83752092-83752111 | Msa1220570:CDS | 50.0% | |
| !! | CTTGAAGGTGCTCTCAAGCA+TGG | - | chr8_1:83751684-83751703 | None:intergenic | 50.0% |
| GGTTTCAGAACAGGAGAGCA+AGG | + | chr8_1:83752092-83752111 | Msa1220570:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 83751377 | 83752598 | 83751377 | ID=Msa1220570;Name=Msa1220570 |
| chr8_1 | mRNA | 83751377 | 83752598 | 83751377 | ID=Msa1220570-mRNA-1;Parent=Msa1220570;Name=Msa1220570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.33|1|1|1|3|0|220 |
| chr8_1 | exon | 83751377 | 83751724 | 83751377 | ID=Msa1220570-mRNA-1:exon:30021;Parent=Msa1220570-mRNA-1 |
| chr8_1 | exon | 83752034 | 83752113 | 83752034 | ID=Msa1220570-mRNA-1:exon:30022;Parent=Msa1220570-mRNA-1 |
| chr8_1 | exon | 83752364 | 83752598 | 83752364 | ID=Msa1220570-mRNA-1:exon:30023;Parent=Msa1220570-mRNA-1 |
| chr8_1 | CDS | 83751377 | 83751724 | 83751377 | ID=Msa1220570-mRNA-1:cds;Parent=Msa1220570-mRNA-1 |
| chr8_1 | CDS | 83752034 | 83752113 | 83752034 | ID=Msa1220570-mRNA-1:cds;Parent=Msa1220570-mRNA-1 |
| chr8_1 | CDS | 83752364 | 83752598 | 83752364 | ID=Msa1220570-mRNA-1:cds;Parent=Msa1220570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
