Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334550 | XP_003610006.1 | 92.727 | 220 | 12 | 2 | 1 | 220 | 1 | 216 | 1.86e-135 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334550 | sp|P46604|HAT22_ARATH | 40.244 | 246 | 99 | 6 | 1 | 207 | 1 | 237 | 5.43e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334550 | G7JT79 | 92.727 | 220 | 12 | 2 | 1 | 220 | 1 | 216 | 8.89e-136 | 389 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1334550 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1220570 | Msa1334550 | 0.933702 | 1.254037e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334550 | MtrunA17_Chr4g0071411 | 92.727 | 220 | 12 | 2 | 1 | 220 | 1 | 216 | 1.71e-139 | 389 |
| Msa1334550 | MtrunA17_Chr8g0385491 | 83.495 | 103 | 13 | 2 | 1 | 103 | 83 | 181 | 5.62e-45 | 148 |
| Msa1334550 | MtrunA17_Chr5g0399491 | 53.741 | 147 | 58 | 2 | 61 | 207 | 112 | 248 | 1.08e-41 | 143 |
| Msa1334550 | MtrunA17_Chr5g0400781 | 63.077 | 130 | 36 | 4 | 80 | 207 | 115 | 234 | 1.39e-40 | 139 |
| Msa1334550 | MtrunA17_Chr4g0055851 | 54.422 | 147 | 56 | 3 | 80 | 218 | 102 | 245 | 2.07e-40 | 139 |
| Msa1334550 | MtrunA17_Chr8g0335131 | 63.248 | 117 | 40 | 1 | 91 | 207 | 145 | 258 | 2.79e-39 | 137 |
| Msa1334550 | MtrunA17_Chr1g0175651 | 49.367 | 158 | 70 | 3 | 50 | 207 | 118 | 265 | 1.34e-37 | 132 |
| Msa1334550 | MtrunA17_Chr7g0258831 | 48.101 | 158 | 73 | 2 | 50 | 207 | 123 | 271 | 1.89e-37 | 132 |
| Msa1334550 | MtrunA17_Chr4g0054421 | 60.684 | 117 | 42 | 2 | 91 | 207 | 126 | 238 | 4.80e-37 | 130 |
| Msa1334550 | MtrunA17_Chr2g0299031 | 43.478 | 207 | 95 | 5 | 11 | 215 | 15 | 201 | 4.23e-36 | 126 |
| Msa1334550 | MtrunA17_Chr2g0308611 | 53.623 | 138 | 49 | 3 | 79 | 204 | 187 | 321 | 5.63e-36 | 129 |
| Msa1334550 | MtrunA17_Chr1g0151971 | 60.345 | 116 | 44 | 2 | 91 | 206 | 129 | 242 | 1.93e-35 | 126 |
| Msa1334550 | MtrunA17_Chr4g0044091 | 49.206 | 126 | 58 | 3 | 86 | 207 | 59 | 182 | 7.86e-31 | 112 |
| Msa1334550 | MtrunA17_Chr3g0135331 | 51.587 | 126 | 48 | 3 | 86 | 207 | 139 | 255 | 3.64e-28 | 108 |
| Msa1334550 | MtrunA17_Chr7g0217111 | 48.864 | 88 | 45 | 0 | 91 | 178 | 79 | 166 | 2.81e-19 | 83.6 |
| Msa1334550 | MtrunA17_Chr3g0119291 | 47.368 | 95 | 43 | 1 | 92 | 179 | 59 | 153 | 4.58e-19 | 82.8 |
| Msa1334550 | MtrunA17_Chr8g0362751 | 48.936 | 94 | 41 | 1 | 92 | 178 | 89 | 182 | 8.19e-19 | 82.8 |
| Msa1334550 | MtrunA17_Chr5g0415941 | 46.809 | 94 | 43 | 1 | 92 | 178 | 87 | 180 | 1.88e-18 | 82.0 |
| Msa1334550 | MtrunA17_Chr7g0265521 | 42.453 | 106 | 61 | 0 | 73 | 178 | 44 | 149 | 2.22e-18 | 80.5 |
| Msa1334550 | MtrunA17_Chr6g0450991 | 48.387 | 93 | 41 | 1 | 92 | 177 | 67 | 159 | 5.93e-18 | 80.5 |
| Msa1334550 | MtrunA17_Chr8g0381741 | 37.500 | 136 | 71 | 2 | 91 | 219 | 53 | 181 | 9.43e-18 | 80.1 |
| Msa1334550 | MtrunA17_Chr6g0453021 | 47.872 | 94 | 42 | 1 | 92 | 178 | 96 | 189 | 1.36e-17 | 79.3 |
| Msa1334550 | MtrunA17_Chr8g0362151 | 46.591 | 88 | 47 | 0 | 92 | 179 | 77 | 164 | 1.75e-17 | 79.0 |
| Msa1334550 | MtrunA17_Chr5g0416391 | 45.455 | 88 | 48 | 0 | 92 | 179 | 77 | 164 | 7.96e-17 | 77.0 |
| Msa1334550 | MtrunA17_Chr3g0123691 | 40.385 | 104 | 53 | 2 | 82 | 178 | 52 | 153 | 1.80e-15 | 73.6 |
| Msa1334550 | MtrunA17_Chr1g0179581 | 38.318 | 107 | 65 | 1 | 68 | 174 | 5 | 110 | 2.51e-15 | 69.3 |
| Msa1334550 | MtrunA17_Chr4g0060031 | 45.161 | 93 | 44 | 1 | 92 | 177 | 95 | 187 | 9.90e-15 | 72.0 |
| Msa1334550 | MtrunA17_Chr8g0346251 | 35.246 | 122 | 72 | 1 | 65 | 179 | 7 | 128 | 2.86e-13 | 67.0 |
| Msa1334550 | MtrunA17_Chr3g0127511 | 42.857 | 84 | 48 | 0 | 95 | 178 | 41 | 124 | 1.74e-12 | 64.7 |
| Msa1334550 | MtrunA17_Chr5g0403691 | 47.297 | 74 | 39 | 0 | 85 | 158 | 46 | 119 | 9.83e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334550 | AT4G37790.1 | 40.244 | 246 | 99 | 6 | 1 | 207 | 1 | 237 | 5.52e-41 | 141 |
| Msa1334550 | AT3G60390.1 | 58.779 | 131 | 50 | 3 | 78 | 207 | 147 | 274 | 1.15e-40 | 141 |
| Msa1334550 | AT4G16780.1 | 57.143 | 126 | 50 | 2 | 81 | 206 | 119 | 240 | 2.75e-38 | 134 |
| Msa1334550 | AT5G06710.1 | 52.593 | 135 | 50 | 2 | 78 | 207 | 176 | 301 | 8.63e-38 | 134 |
| Msa1334550 | AT2G22800.1 | 39.316 | 234 | 105 | 6 | 1 | 207 | 1 | 224 | 2.02e-36 | 129 |
| Msa1334550 | AT2G44910.1 | 58.120 | 117 | 46 | 1 | 91 | 207 | 162 | 275 | 1.02e-35 | 128 |
| Msa1334550 | AT5G47370.1 | 49.296 | 142 | 69 | 1 | 78 | 219 | 116 | 254 | 1.59e-35 | 127 |
| Msa1334550 | AT4G17460.1 | 42.941 | 170 | 78 | 3 | 47 | 216 | 106 | 256 | 1.87e-34 | 124 |
| Msa1334550 | AT1G70920.1 | 42.958 | 142 | 68 | 2 | 67 | 207 | 44 | 173 | 2.79e-28 | 106 |
| Msa1334550 | AT1G70920.2 | 42.958 | 142 | 68 | 2 | 67 | 207 | 14 | 143 | 2.91e-28 | 105 |
| Msa1334550 | AT2G01430.1 | 46.667 | 135 | 61 | 2 | 78 | 207 | 120 | 248 | 3.84e-28 | 107 |
| Msa1334550 | AT5G06710.4 | 59.155 | 71 | 29 | 0 | 73 | 143 | 171 | 241 | 8.73e-22 | 90.9 |
| Msa1334550 | AT1G26960.1 | 40.000 | 120 | 71 | 1 | 61 | 179 | 39 | 158 | 9.63e-19 | 82.4 |
| Msa1334550 | AT1G69780.1 | 48.864 | 88 | 45 | 0 | 92 | 179 | 85 | 172 | 1.29e-17 | 79.7 |
| Msa1334550 | AT3G01470.1 | 48.387 | 93 | 41 | 2 | 92 | 177 | 68 | 160 | 6.10e-17 | 77.8 |
| Msa1334550 | AT3G01220.1 | 50.633 | 79 | 39 | 0 | 92 | 170 | 87 | 165 | 7.61e-17 | 77.8 |
| Msa1334550 | AT2G01430.2 | 48.864 | 88 | 38 | 2 | 78 | 160 | 120 | 205 | 7.70e-17 | 76.3 |
| Msa1334550 | AT5G15150.1 | 48.936 | 94 | 41 | 1 | 92 | 178 | 115 | 208 | 1.97e-16 | 77.0 |
| Msa1334550 | AT2G46680.2 | 43.158 | 95 | 50 | 1 | 83 | 177 | 27 | 117 | 5.67e-16 | 74.7 |
| Msa1334550 | AT2G46680.1 | 43.158 | 95 | 50 | 1 | 83 | 177 | 27 | 117 | 6.51e-16 | 74.7 |
| Msa1334550 | AT5G65310.1 | 43.158 | 95 | 47 | 1 | 92 | 179 | 72 | 166 | 1.38e-15 | 74.3 |
| Msa1334550 | AT5G65310.2 | 43.158 | 95 | 47 | 1 | 92 | 179 | 54 | 148 | 1.61e-15 | 73.9 |
| Msa1334550 | AT5G03790.1 | 42.708 | 96 | 55 | 0 | 85 | 180 | 70 | 165 | 1.98e-15 | 73.2 |
| Msa1334550 | AT4G40060.1 | 44.086 | 93 | 48 | 1 | 92 | 180 | 59 | 151 | 5.05e-15 | 72.8 |
| Msa1334550 | AT2G22430.1 | 44.211 | 95 | 46 | 1 | 92 | 179 | 62 | 156 | 6.15e-15 | 72.8 |
| Msa1334550 | AT5G03790.2 | 44.444 | 90 | 50 | 0 | 85 | 174 | 70 | 159 | 3.61e-14 | 68.9 |
| Msa1334550 | AT3G61890.1 | 40.964 | 83 | 49 | 0 | 95 | 177 | 33 | 115 | 2.21e-13 | 67.4 |
| Msa1334550 | AT2G36610.1 | 38.596 | 114 | 62 | 2 | 75 | 180 | 54 | 167 | 6.72e-13 | 65.1 |
| Msa1334550 | AT4G36740.2 | 40.625 | 96 | 57 | 0 | 83 | 178 | 47 | 142 | 5.40e-12 | 63.2 |
| Msa1334550 | AT4G36740.1 | 40.625 | 96 | 57 | 0 | 83 | 178 | 46 | 141 | 5.72e-12 | 63.2 |
| Msa1334550 | AT5G53980.1 | 43.333 | 90 | 49 | 2 | 90 | 178 | 9 | 97 | 6.09e-12 | 62.0 |
| Msa1334550 | AT2G18550.1 | 38.679 | 106 | 63 | 1 | 73 | 178 | 44 | 147 | 6.27e-12 | 63.2 |
| Msa1334550 | AT5G66700.1 | 45.833 | 72 | 39 | 0 | 92 | 163 | 71 | 142 | 2.40e-11 | 61.6 |
| Msa1334550 | AT1G27045.4 | 41.935 | 93 | 47 | 1 | 92 | 177 | 68 | 160 | 8.62e-11 | 60.5 |
Find 34 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGTGAAAGATTCAATT+TGG | 0.267895 | 8_4:+55009063 | Msa1334550:CDS |
| ACGTTCATAGGTTCTCCTTT+TGG | 0.352374 | 8_4:-55009019 | None:intergenic |
| TTGAGGTTTGGTTTCAGAAC+AGG | 0.362659 | 8_4:+55009615 | Msa1334550:CDS |
| GTCTTGTCTTTAACCTCAAT+TGG | 0.365222 | 8_4:-55009589 | None:intergenic |
| TTGTTGTTGTGTACGTTCAT+AGG | 0.371543 | 8_4:-55009031 | None:intergenic |
| TCTACGATCGTTGTTGTTGT+TGG | 0.376794 | 8_4:-55009137 | None:intergenic |
| AAGATTAAAGAAGGAATTGC+AGG | 0.404223 | 8_4:+55009977 | Msa1334550:CDS |
| AGACAAGACAAATTGAGGTT+TGG | 0.409339 | 8_4:+55009603 | Msa1334550:CDS |
| ACAGGTTTATGTCTAGGTCT+TGG | 0.420666 | 8_4:+55008911 | Msa1334550:CDS |
| TTATGTCTAGGTCTTGGAAT+AGG | 0.424289 | 8_4:+55008917 | Msa1334550:CDS |
| TTGCAGGAACTCAAAGTTGT+TGG | 0.456628 | 8_4:+55009993 | Msa1334550:CDS |
| TAGCACTTGCTGACCAATTG+AGG | 0.458161 | 8_4:+55009576 | Msa1334550:CDS |
| GCATTCTTCATCACTTTCCA+TGG | 0.470187 | 8_4:-55008885 | None:intergenic |
| GTTAAAGACAAGACAAATTG+AGG | 0.472426 | 8_4:+55009598 | Msa1334550:CDS |
| ATACCGGATTAAGAGTGTTA+TGG | 0.475608 | 8_4:-55009216 | None:intergenic |
| AGTGATGAAGAATGCAATAC+AGG | 0.485322 | 8_4:+55008893 | Msa1334550:CDS |
| GCTCCATAACACTCTTAATC+CGG | 0.495490 | 8_4:+55009213 | Msa1334550:CDS |
| AAGAGTGTTATGGAGCTTGA+AGG | 0.507942 | 8_4:-55009206 | None:intergenic |
| TTGGACAAAGCTCAAAAGCT+AGG | 0.524782 | 8_4:-55009000 | None:intergenic |
| GACTAAGCTGAAGCAGATAG+AGG | 0.526640 | 8_4:+55009902 | Msa1334550:CDS |
| TGAGAACAAAAGATTAAAGA+AGG | 0.527592 | 8_4:+55009968 | Msa1334550:CDS |
| TGATCTTCATTATGCTTCAA+CGG | 0.529611 | 8_4:-55010098 | None:intergenic |
| TGCAATACAGGTTTATGTCT+AGG | 0.537810 | 8_4:+55008905 | Msa1334550:CDS |
| CTTGAAGGTGCTCTCAAGCA+TGG | 0.539476 | 8_4:-55009191 | None:intergenic |
| GATAAACGTTGAGGGCATAA+CGG | 0.556727 | 8_4:-55010023 | None:intergenic |
| GGTTTCAGAACAGGAGAGCA+AGG | 0.572572 | 8_4:+55009624 | Msa1334550:CDS |
| ATTAGTGAATAAATCTGTGA+TGG | 0.573054 | 8_4:+55008964 | Msa1334550:CDS |
| TCTTGGAATAGGTGCAACAA+AGG | 0.613459 | 8_4:+55008928 | Msa1334550:CDS |
| ACAGTACTATGAGTCACCAC+TGG | 0.648715 | 8_4:-55010053 | None:intergenic |
| TAAGCTGAAGCAGATAGAGG+TGG | 0.656332 | 8_4:+55009905 | Msa1334550:CDS |
| AAAGAAACTGAGGCTAACAA+AGG | 0.656758 | 8_4:+55009159 | Msa1334550:CDS |
| TCAAAAGCTAGGTCAAAACA+AGG | 0.669862 | 8_4:-55008989 | None:intergenic |
| ACGTTTATCATCAAAACCAG+TGG | 0.690620 | 8_4:+55010037 | Msa1334550:CDS |
| ACGATCGTAGAAAGAAACTG+AGG | 0.720750 | 8_4:+55009149 | Msa1334550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTATTATTATTTAA+TGG | + | chr8_4:55009421-55009440 | Msa1334550:intron | 0.0% |
| !! | TTATTATTATTATTATTTAA+TGG | + | chr8_4:55009421-55009440 | Msa1334550:intron | 0.0% |
| !!! | TACATATTATAGAGAATTTT+TGG | - | chr8_4:55009259-55009278 | None:intergenic | 15.0% |
| !!! | TAATTTTTCTTCATATTATC+TGG | + | chr8_4:55009717-55009736 | Msa1334550:intron | 15.0% |
| !!! | AATTTTTCTTCATATTATCT+GGG | + | chr8_4:55009718-55009737 | Msa1334550:intron | 15.0% |
| !! | ACAATTTATTTATAAGCTAA+TGG | - | chr8_4:55009860-55009879 | None:intergenic | 15.0% |
| !! | TGTATTTATTTATATAACAC+AGG | + | chr8_4:55009880-55009899 | Msa1334550:intron | 15.0% |
| !!! | TACATATTATAGAGAATTTT+TGG | - | chr8_4:55009259-55009278 | None:intergenic | 15.0% |
| !!! | TAATTTTTCTTCATATTATC+TGG | + | chr8_4:55009717-55009736 | Msa1334550:intron | 15.0% |
| !!! | AATTTTTCTTCATATTATCT+GGG | + | chr8_4:55009718-55009737 | Msa1334550:intron | 15.0% |
| !! | ACAATTTATTTATAAGCTAA+TGG | - | chr8_4:55009860-55009879 | None:intergenic | 15.0% |
| !! | TGTATTTATTTATATAACAC+AGG | + | chr8_4:55009880-55009899 | Msa1334550:intron | 15.0% |
| !!! | ACGTTACATTTTGATAATAT+TGG | - | chr8_4:55009096-55009115 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTTCTATATGACA+AGG | + | chr8_4:55009498-55009517 | Msa1334550:intron | 20.0% |
| !!! | TTAGTTTTTCTATATGACAA+GGG | + | chr8_4:55009499-55009518 | Msa1334550:intron | 20.0% |
| !!! | ACGTTACATTTTGATAATAT+TGG | - | chr8_4:55009096-55009115 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTTCTATATGACA+AGG | + | chr8_4:55009498-55009517 | Msa1334550:intron | 20.0% |
| !!! | TTAGTTTTTCTATATGACAA+GGG | + | chr8_4:55009499-55009518 | Msa1334550:intron | 20.0% |
| ! | ATTAGTGAATAAATCTGTGA+TGG | + | chr8_4:55008964-55008983 | Msa1334550:CDS | 25.0% |
| !! | TTTTGGTATGAATGAATGAA+TGG | - | chr8_4:55009242-55009261 | None:intergenic | 25.0% |
| ! | TGTCATATTGTGTATGTATA+AGG | + | chr8_4:55009301-55009320 | Msa1334550:intron | 25.0% |
| !!! | TTTTGGTTTCATATATATGC+AGG | + | chr8_4:55009544-55009563 | Msa1334550:intron | 25.0% |
| ! | TGAGAACAAAAGATTAAAGA+AGG | + | chr8_4:55009968-55009987 | Msa1334550:CDS | 25.0% |
| ! | ATTAGTGAATAAATCTGTGA+TGG | + | chr8_4:55008964-55008983 | Msa1334550:CDS | 25.0% |
| !! | TTTTGGTATGAATGAATGAA+TGG | - | chr8_4:55009242-55009261 | None:intergenic | 25.0% |
| ! | TGTCATATTGTGTATGTATA+AGG | + | chr8_4:55009301-55009320 | Msa1334550:intron | 25.0% |
| !!! | TTTTGGTTTCATATATATGC+AGG | + | chr8_4:55009544-55009563 | Msa1334550:intron | 25.0% |
| ! | TGAGAACAAAAGATTAAAGA+AGG | + | chr8_4:55009968-55009987 | Msa1334550:CDS | 25.0% |
| CAAAGGTGAAAGATTCAATT+TGG | + | chr8_4:55009063-55009082 | Msa1334550:CDS | 30.0% | |
| ATGAATGAATGAATGGATAC+CGG | - | chr8_4:55009235-55009254 | None:intergenic | 30.0% | |
| GTTAAAGACAAGACAAATTG+AGG | + | chr8_4:55009598-55009617 | Msa1334550:CDS | 30.0% | |
| ! | CTATATGTTGATATCGATTG+CGG | + | chr8_4:55009802-55009821 | Msa1334550:intron | 30.0% |
| AAGATTAAAGAAGGAATTGC+AGG | + | chr8_4:55009977-55009996 | Msa1334550:CDS | 30.0% | |
| !! | GTTTTGATGATAAACGTTGA+GGG | - | chr8_4:55010034-55010053 | None:intergenic | 30.0% |
| TGATCTTCATTATGCTTCAA+CGG | - | chr8_4:55010101-55010120 | None:intergenic | 30.0% | |
| CAAAGGTGAAAGATTCAATT+TGG | + | chr8_4:55009063-55009082 | Msa1334550:CDS | 30.0% | |
| ATGAATGAATGAATGGATAC+CGG | - | chr8_4:55009235-55009254 | None:intergenic | 30.0% | |
| GTTAAAGACAAGACAAATTG+AGG | + | chr8_4:55009598-55009617 | Msa1334550:CDS | 30.0% | |
| ! | CTATATGTTGATATCGATTG+CGG | + | chr8_4:55009802-55009821 | Msa1334550:intron | 30.0% |
| AAGATTAAAGAAGGAATTGC+AGG | + | chr8_4:55009977-55009996 | Msa1334550:CDS | 30.0% | |
| !! | GTTTTGATGATAAACGTTGA+GGG | - | chr8_4:55010034-55010053 | None:intergenic | 30.0% |
| TGATCTTCATTATGCTTCAA+CGG | - | chr8_4:55010101-55010120 | None:intergenic | 30.0% | |
| AGTGATGAAGAATGCAATAC+AGG | + | chr8_4:55008893-55008912 | Msa1334550:CDS | 35.0% | |
| TGCAATACAGGTTTATGTCT+AGG | + | chr8_4:55008905-55008924 | Msa1334550:CDS | 35.0% | |
| TTATGTCTAGGTCTTGGAAT+AGG | + | chr8_4:55008917-55008936 | Msa1334550:CDS | 35.0% | |
| TCAAAAGCTAGGTCAAAACA+AGG | - | chr8_4:55008992-55009011 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTGTACGTTCAT+AGG | - | chr8_4:55009034-55009053 | None:intergenic | 35.0% |
| AACAACAACAACAACAGCAA+AGG | + | chr8_4:55009046-55009065 | Msa1334550:CDS | 35.0% | |
| AAAGAAACTGAGGCTAACAA+AGG | + | chr8_4:55009159-55009178 | Msa1334550:CDS | 35.0% | |
| !! | ATACCGGATTAAGAGTGTTA+TGG | - | chr8_4:55009219-55009238 | None:intergenic | 35.0% |
| GTAGAAATGAGTTTATGCGT+TGG | + | chr8_4:55009521-55009540 | Msa1334550:intron | 35.0% | |
| !!! | ATGAGTTTATGCGTTGGTTT+TGG | + | chr8_4:55009527-55009546 | Msa1334550:intron | 35.0% |
| GTCTTGTCTTTAACCTCAAT+TGG | - | chr8_4:55009592-55009611 | None:intergenic | 35.0% | |
| AGACAAGACAAATTGAGGTT+TGG | + | chr8_4:55009603-55009622 | Msa1334550:CDS | 35.0% | |
| !! | GGTTTTGATGATAAACGTTG+AGG | - | chr8_4:55010035-55010054 | None:intergenic | 35.0% |
| ACGTTTATCATCAAAACCAG+TGG | + | chr8_4:55010037-55010056 | Msa1334550:CDS | 35.0% | |
| AGTGATGAAGAATGCAATAC+AGG | + | chr8_4:55008893-55008912 | Msa1334550:CDS | 35.0% | |
| TGCAATACAGGTTTATGTCT+AGG | + | chr8_4:55008905-55008924 | Msa1334550:CDS | 35.0% | |
| TTATGTCTAGGTCTTGGAAT+AGG | + | chr8_4:55008917-55008936 | Msa1334550:CDS | 35.0% | |
| TCAAAAGCTAGGTCAAAACA+AGG | - | chr8_4:55008992-55009011 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTGTACGTTCAT+AGG | - | chr8_4:55009034-55009053 | None:intergenic | 35.0% |
| AACAACAACAACAACAGCAA+AGG | + | chr8_4:55009046-55009065 | Msa1334550:CDS | 35.0% | |
| AAAGAAACTGAGGCTAACAA+AGG | + | chr8_4:55009159-55009178 | Msa1334550:CDS | 35.0% | |
| !! | ATACCGGATTAAGAGTGTTA+TGG | - | chr8_4:55009219-55009238 | None:intergenic | 35.0% |
| GTAGAAATGAGTTTATGCGT+TGG | + | chr8_4:55009521-55009540 | Msa1334550:intron | 35.0% | |
| !!! | ATGAGTTTATGCGTTGGTTT+TGG | + | chr8_4:55009527-55009546 | Msa1334550:intron | 35.0% |
| GTCTTGTCTTTAACCTCAAT+TGG | - | chr8_4:55009592-55009611 | None:intergenic | 35.0% | |
| AGACAAGACAAATTGAGGTT+TGG | + | chr8_4:55009603-55009622 | Msa1334550:CDS | 35.0% | |
| !! | GGTTTTGATGATAAACGTTG+AGG | - | chr8_4:55010035-55010054 | None:intergenic | 35.0% |
| ACGTTTATCATCAAAACCAG+TGG | + | chr8_4:55010037-55010056 | Msa1334550:CDS | 35.0% | |
| ACAGGTTTATGTCTAGGTCT+TGG | + | chr8_4:55008911-55008930 | Msa1334550:CDS | 40.0% | |
| TCTTGGAATAGGTGCAACAA+AGG | + | chr8_4:55008928-55008947 | Msa1334550:CDS | 40.0% | |
| TTGGACAAAGCTCAAAAGCT+AGG | - | chr8_4:55009003-55009022 | None:intergenic | 40.0% | |
| !! | GCTTTTGAGCTTTGTCCAAA+AGG | + | chr8_4:55009004-55009023 | Msa1334550:CDS | 40.0% |
| ! | ACGTTCATAGGTTCTCCTTT+TGG | - | chr8_4:55009022-55009041 | None:intergenic | 40.0% |
| ! | TCTACGATCGTTGTTGTTGT+TGG | - | chr8_4:55009140-55009159 | None:intergenic | 40.0% |
| ACGATCGTAGAAAGAAACTG+AGG | + | chr8_4:55009149-55009168 | Msa1334550:CDS | 40.0% | |
| !! | AAGAGTGTTATGGAGCTTGA+AGG | - | chr8_4:55009209-55009228 | None:intergenic | 40.0% |
| GCTCCATAACACTCTTAATC+CGG | + | chr8_4:55009213-55009232 | Msa1334550:CDS | 40.0% | |
| ! | TTGAGGTTTGGTTTCAGAAC+AGG | + | chr8_4:55009615-55009634 | Msa1334550:CDS | 40.0% |
| TTGCAGGAACTCAAAGTTGT+TGG | + | chr8_4:55009993-55010012 | Msa1334550:CDS | 40.0% | |
| ! | GATAAACGTTGAGGGCATAA+CGG | - | chr8_4:55010026-55010045 | None:intergenic | 40.0% |
| ACAGGTTTATGTCTAGGTCT+TGG | + | chr8_4:55008911-55008930 | Msa1334550:CDS | 40.0% | |
| TCTTGGAATAGGTGCAACAA+AGG | + | chr8_4:55008928-55008947 | Msa1334550:CDS | 40.0% | |
| TTGGACAAAGCTCAAAAGCT+AGG | - | chr8_4:55009003-55009022 | None:intergenic | 40.0% | |
| !! | GCTTTTGAGCTTTGTCCAAA+AGG | + | chr8_4:55009004-55009023 | Msa1334550:CDS | 40.0% |
| ! | ACGTTCATAGGTTCTCCTTT+TGG | - | chr8_4:55009022-55009041 | None:intergenic | 40.0% |
| ! | TCTACGATCGTTGTTGTTGT+TGG | - | chr8_4:55009140-55009159 | None:intergenic | 40.0% |
| ACGATCGTAGAAAGAAACTG+AGG | + | chr8_4:55009149-55009168 | Msa1334550:CDS | 40.0% | |
| !! | AAGAGTGTTATGGAGCTTGA+AGG | - | chr8_4:55009209-55009228 | None:intergenic | 40.0% |
| GCTCCATAACACTCTTAATC+CGG | + | chr8_4:55009213-55009232 | Msa1334550:CDS | 40.0% | |
| ! | TTGAGGTTTGGTTTCAGAAC+AGG | + | chr8_4:55009615-55009634 | Msa1334550:CDS | 40.0% |
| TTGCAGGAACTCAAAGTTGT+TGG | + | chr8_4:55009993-55010012 | Msa1334550:CDS | 40.0% | |
| ! | GATAAACGTTGAGGGCATAA+CGG | - | chr8_4:55010026-55010045 | None:intergenic | 40.0% |
| ! | TAGCACTTGCTGACCAATTG+AGG | + | chr8_4:55009576-55009595 | Msa1334550:CDS | 45.0% |
| GACTAAGCTGAAGCAGATAG+AGG | + | chr8_4:55009902-55009921 | Msa1334550:CDS | 45.0% | |
| TAAGCTGAAGCAGATAGAGG+TGG | + | chr8_4:55009905-55009924 | Msa1334550:CDS | 45.0% | |
| ACAGTACTATGAGTCACCAC+TGG | - | chr8_4:55010056-55010075 | None:intergenic | 45.0% | |
| ! | TAGCACTTGCTGACCAATTG+AGG | + | chr8_4:55009576-55009595 | Msa1334550:CDS | 45.0% |
| GACTAAGCTGAAGCAGATAG+AGG | + | chr8_4:55009902-55009921 | Msa1334550:CDS | 45.0% | |
| TAAGCTGAAGCAGATAGAGG+TGG | + | chr8_4:55009905-55009924 | Msa1334550:CDS | 45.0% | |
| ACAGTACTATGAGTCACCAC+TGG | - | chr8_4:55010056-55010075 | None:intergenic | 45.0% | |
| !! | AATAAATACTAAAATTAAAT+AGG | - | chr8_4:55009766-55009785 | None:intergenic | 5.0% |
| !! | AATAAATACTAAAATTAAAT+AGG | - | chr8_4:55009766-55009785 | None:intergenic | 5.0% |
| !! | CTTGAAGGTGCTCTCAAGCA+TGG | - | chr8_4:55009194-55009213 | None:intergenic | 50.0% |
| GGTTTCAGAACAGGAGAGCA+AGG | + | chr8_4:55009624-55009643 | Msa1334550:CDS | 50.0% | |
| !! | CTTGAAGGTGCTCTCAAGCA+TGG | - | chr8_4:55009194-55009213 | None:intergenic | 50.0% |
| GGTTTCAGAACAGGAGAGCA+AGG | + | chr8_4:55009624-55009643 | Msa1334550:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 55008887 | 55010136 | 55008887 | ID=Msa1334550;Name=Msa1334550 |
| chr8_4 | mRNA | 55008887 | 55010136 | 55008887 | ID=Msa1334550-mRNA-1;Parent=Msa1334550;Name=Msa1334550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.33|1|1|1|3|0|220 |
| chr8_4 | exon | 55008887 | 55009234 | 55008887 | ID=Msa1334550-mRNA-1:exon:17144;Parent=Msa1334550-mRNA-1 |
| chr8_4 | exon | 55009566 | 55009645 | 55009566 | ID=Msa1334550-mRNA-1:exon:17145;Parent=Msa1334550-mRNA-1 |
| chr8_4 | exon | 55009902 | 55010136 | 55009902 | ID=Msa1334550-mRNA-1:exon:17146;Parent=Msa1334550-mRNA-1 |
| chr8_4 | CDS | 55008887 | 55009234 | 55008887 | ID=Msa1334550-mRNA-1:cds;Parent=Msa1334550-mRNA-1 |
| chr8_4 | CDS | 55009566 | 55009645 | 55009566 | ID=Msa1334550-mRNA-1:cds;Parent=Msa1334550-mRNA-1 |
| chr8_4 | CDS | 55009902 | 55010136 | 55009902 | ID=Msa1334550-mRNA-1:cds;Parent=Msa1334550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
