Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1220960 | sp|F4KFT7|TENAC_ARATH | 66.556 | 601 | 178 | 7 | 10 | 598 | 26 | 615 | 0.0 | 760 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1220960 | A0A396JQW5 | 97.841 | 602 | 10 | 1 | 1 | 599 | 1 | 602 | 0.0 | 1213 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0032150 | Msa1220960 | 0.810425 | 1.159963e-50 | -8.615850e-47 |
Msa1220960 | Msa1398510 | 0.805625 | 1.219307e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1220960 | MtrunA17_Chr1g0190441 | 97.841 | 602 | 10 | 1 | 1 | 599 | 1 | 602 | 0.0 | 1213 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1220960 | AT5G32470.1 | 66.556 | 601 | 178 | 7 | 10 | 598 | 26 | 615 | 0.0 | 760 |
Find 153 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGGACTTGCGAAGCGTTTC+TGG | 0.062503 | 8_1:-84380837 | Msa1220960:CDS |
GTCTCTCTTATTTCTCTTTC+AGG | 0.089732 | 8_1:-84376209 | Msa1220960:three_prime_UTR |
TTTCTGTTGGCTACTGCTTC+TGG | 0.123278 | 8_1:-84378501 | Msa1220960:CDS |
TCAGGCTGATTGTCGGATTT+TGG | 0.180316 | 8_1:+84377861 | None:intergenic |
GAGAATCATCATACATTTAT+TGG | 0.192665 | 8_1:+84377731 | None:intergenic |
GCAGCTTCATTATAGATTAA+TGG | 0.193575 | 8_1:-84375892 | Msa1220960:three_prime_UTR |
TAAAGTATAAGCAGCAATTT+TGG | 0.205603 | 8_1:+84378425 | None:intergenic |
CTGCTGAATCCTTAAAATTA+TGG | 0.221221 | 8_1:+84375978 | None:intergenic |
AAAATTGCTGCTTATACTTT+AGG | 0.226024 | 8_1:-84378423 | Msa1220960:CDS |
TCGAGAACTCAGCAAATAAT+AGG | 0.227356 | 8_1:-84377563 | Msa1220960:CDS |
TTATCAATTCCAGTAGATTA+TGG | 0.241020 | 8_1:-84375855 | Msa1220960:three_prime_UTR |
CCATTTGGATTCGGTTTCTA+TGG | 0.261612 | 8_1:+84380884 | None:intergenic |
CTATTCCTCTGATGGTTTCC+AGG | 0.273448 | 8_1:-84378295 | Msa1220960:intron |
TCCAATTGGAAGGGTTTATC+TGG | 0.273912 | 8_1:-84376412 | Msa1220960:CDS |
TGTCTGAAATTTCTCATTCC+TGG | 0.275265 | 8_1:+84376083 | None:intergenic |
TGGAGAGCGTTTGATTCTTC+AGG | 0.303161 | 8_1:-84377487 | Msa1220960:CDS |
ATTAGGTCTGCTTTCTCTTC+AGG | 0.304553 | 8_1:-84377372 | Msa1220960:intron |
TGTTGAGTCAGGGGTTCTTA+AGG | 0.313829 | 8_1:-84377538 | Msa1220960:CDS |
ATGAGGCTGTATGCCTTTCT+TGG | 0.316675 | 8_1:-84378384 | Msa1220960:CDS |
ATCACGAGACGATCTTCTTC+AGG | 0.318505 | 8_1:+84377960 | None:intergenic |
GGTGCAACTGCTTCGCTTGT+GGG | 0.329214 | 8_1:+84381109 | None:intergenic |
TATCAATTCCAGTAGATTAT+GGG | 0.336583 | 8_1:-84375854 | Msa1220960:three_prime_UTR |
AAACTAAGTGTCTCTTTAAC+TGG | 0.341757 | 8_1:-84378101 | Msa1220960:CDS |
AGGACCATAGGGACACAATT+TGG | 0.349524 | 8_1:-84376502 | Msa1220960:CDS |
AATAATAGGGTTGTTGAGTC+AGG | 0.361953 | 8_1:-84377549 | Msa1220960:CDS |
ATTCGAGCTATTTGATCTTC+AGG | 0.363900 | 8_1:+84377843 | None:intergenic |
GCTGGTGTGGTGACCTCATT+AGG | 0.364039 | 8_1:-84377389 | Msa1220960:CDS |
TTCTTTACACAGTCTCTAGT+TGG | 0.371085 | 8_1:-84376387 | Msa1220960:CDS |
TTTCTCATTCCTGGCATGAT+TGG | 0.373067 | 8_1:+84376092 | None:intergenic |
TGAGTTAATACTGTGCTCTT+TGG | 0.378416 | 8_1:+84378545 | None:intergenic |
GTTGAGTCAGGGGTTCTTAA+GGG | 0.382971 | 8_1:-84377537 | Msa1220960:CDS |
ATTGAAGGACTGAAAAGTTC+TGG | 0.386533 | 8_1:-84378474 | Msa1220960:CDS |
TGTTGATTCATCTGCCATCT+TGG | 0.390739 | 8_1:-84377907 | Msa1220960:CDS |
TTCTGTTGGCTACTGCTTCT+GGG | 0.391154 | 8_1:-84378500 | Msa1220960:CDS |
TTTGTTATCTCTTTAGCTTC+CGG | 0.395712 | 8_1:-84380772 | Msa1220960:CDS |
TTTCAAATGCTTGTTAGATC+AGG | 0.397897 | 8_1:-84376054 | Msa1220960:three_prime_UTR |
GATTGTGAATTGCTGCCATT+TGG | 0.400081 | 8_1:+84380869 | None:intergenic |
TAGTGGTTCTTCGAAGCATC+TGG | 0.405757 | 8_1:-84376147 | Msa1220960:three_prime_UTR |
TGAGTACTTTCTTCGAGGTC+TGG | 0.410220 | 8_1:+84378342 | None:intergenic |
CATTGAAAAGCTTTATTACC+AGG | 0.413331 | 8_1:-84378063 | Msa1220960:CDS |
ATACTCCTCTGTATACTGTT+TGG | 0.415844 | 8_1:+84377782 | None:intergenic |
GAGATTGAAGAACGGATGAT+TGG | 0.415990 | 8_1:+84380943 | None:intergenic |
CTCATTCCTGGCATGATTGG+AGG | 0.418484 | 8_1:+84376095 | None:intergenic |
TGCATGTTCTTTCATACTGC+TGG | 0.421221 | 8_1:-84377407 | Msa1220960:CDS |
TTGGTTCAAGTTCAAGCCTT+AGG | 0.425761 | 8_1:-84376522 | Msa1220960:CDS |
GCCAGATAAACCCTTCCAAT+TGG | 0.432865 | 8_1:+84376411 | None:intergenic |
AGTGCATGTTAAATCAAAAT+CGG | 0.433883 | 8_1:+84377932 | None:intergenic |
ATTTATGCATATGAATTTCA+AGG | 0.434571 | 8_1:+84375927 | None:intergenic |
CTATTTCAAGCTTCATTGCC+TGG | 0.435585 | 8_1:+84378045 | None:intergenic |
CCAATATATTACGAAAAGCC+TGG | 0.439834 | 8_1:+84376641 | None:intergenic |
ACGAAGAAAGCTCTTCCAAT+TGG | 0.441203 | 8_1:-84376426 | Msa1220960:CDS |
TCTTTACACAGTCTCTAGTT+GGG | 0.443386 | 8_1:-84376386 | Msa1220960:CDS |
GTGTTGTACTGGTATTTAGT+AGG | 0.445056 | 8_1:-84376012 | Msa1220960:three_prime_UTR |
GAAGCAGTTGCACCAGCAGC+AGG | 0.449856 | 8_1:-84381100 | Msa1220960:five_prime_UTR |
AGACGAGTGCCTCCTGCTGC+TGG | 0.453587 | 8_1:+84381088 | None:intergenic |
CAGACTTTGAAGTGTTGTAC+TGG | 0.455330 | 8_1:-84376023 | Msa1220960:three_prime_UTR |
CGAGAACTCAGCAAATAATA+GGG | 0.455612 | 8_1:-84377562 | Msa1220960:CDS |
ATCATCATACATTTATTGGC+AGG | 0.455724 | 8_1:+84377735 | None:intergenic |
TGGTGCAACTGCTTCGCTTG+TGG | 0.456055 | 8_1:+84381108 | None:intergenic |
TTAGTCAAGGGTGCTATAGT+TGG | 0.459081 | 8_1:+84377993 | None:intergenic |
TAGTTTGTCGAGCAATTCTT+CGG | 0.468928 | 8_1:+84378118 | None:intergenic |
GAATTGCTGCCATTTGGATT+CGG | 0.469510 | 8_1:+84380875 | None:intergenic |
TACCGGTGACATTGTTAAGA+AGG | 0.475372 | 8_1:-84376686 | Msa1220960:CDS |
GCCAGCTGATTTAATTGAGA+TGG | 0.477959 | 8_1:-84376749 | Msa1220960:intron |
TTGATCTTCAGGCTGATTGT+CGG | 0.478317 | 8_1:+84377854 | None:intergenic |
AGGGTTATGTCCTTTAGTCA+AGG | 0.480433 | 8_1:+84377980 | None:intergenic |
TGCCATTCTGATTTCTCTAG+TGG | 0.480978 | 8_1:-84376164 | Msa1220960:three_prime_UTR |
AGAATCGATCTTCAAGTTAC+CGG | 0.480978 | 8_1:+84380753 | None:intergenic |
TGTCTACTTGAAGCAGATGT+AGG | 0.483362 | 8_1:-84376553 | Msa1220960:CDS |
TGTCGATCCACTTGCAATAC+GGG | 0.484420 | 8_1:+84378319 | None:intergenic |
GATGCATGACTCACTGGTAA+AGG | 0.484632 | 8_1:-84379170 | Msa1220960:intron |
ATTCACAATCACAGTGAAGC+TGG | 0.488032 | 8_1:-84380856 | Msa1220960:CDS |
TTGTCGATCCACTTGCAATA+CGG | 0.489328 | 8_1:+84378318 | None:intergenic |
AAAAGCCTGGACCTTGTCAA+TGG | 0.490746 | 8_1:+84376654 | None:intergenic |
GGGTTATGTCCTTTAGTCAA+GGG | 0.495478 | 8_1:+84377981 | None:intergenic |
AGAAAGCTCTTCCAATTGGA+AGG | 0.496687 | 8_1:-84376422 | Msa1220960:CDS |
AGGAGTGTACATAGAGAAGA+TGG | 0.501365 | 8_1:+84380795 | None:intergenic |
TTGAAGAACGGATGATTGGA+AGG | 0.503290 | 8_1:+84380947 | None:intergenic |
GAACATCTTGAGCGATGTAA+TGG | 0.505674 | 8_1:+84380725 | None:intergenic |
GAAGCTAAAGAGATAACAAA+AGG | 0.510492 | 8_1:+84380775 | None:intergenic |
TAAGTATACAGACTTTCTGT+TGG | 0.511176 | 8_1:-84378514 | Msa1220960:CDS |
TATAGCAATTTCTGCCAAGA+TGG | 0.512042 | 8_1:+84377893 | None:intergenic |
ACTGCTTCTGGGAAGATTGA+AGG | 0.512264 | 8_1:-84378489 | Msa1220960:CDS |
CTGTCTCCTCCAATCATGCC+AGG | 0.512366 | 8_1:-84376101 | Msa1220960:three_prime_UTR |
AAAGCCTGGACCTTGTCAAT+GGG | 0.515036 | 8_1:+84376655 | None:intergenic |
CTTCTGACCTCAGGAACACA+TGG | 0.515072 | 8_1:-84377815 | Msa1220960:CDS |
TCACGAGACGATCTTCTTCA+GGG | 0.515838 | 8_1:+84377961 | None:intergenic |
GCTGAAGATGCATGACTCAC+TGG | 0.516947 | 8_1:-84379176 | Msa1220960:CDS |
TAACCAAGCCAGAAAACAAT+GGG | 0.517719 | 8_1:+84376467 | None:intergenic |
AGTTCAAGCCTTAGGACCAT+AGG | 0.519707 | 8_1:-84376514 | Msa1220960:CDS |
ACGGGTGAGTACTTTCTTCG+AGG | 0.521166 | 8_1:+84378337 | None:intergenic |
CCATAGAAACCGAATCCAAA+TGG | 0.521368 | 8_1:-84380884 | Msa1220960:CDS |
AACTGTTTACATTGGAGACT+CGG | 0.521999 | 8_1:-84376590 | Msa1220960:CDS |
GTCTCCCATTGACAAGGTCC+AGG | 0.526292 | 8_1:-84376659 | Msa1220960:CDS |
ACTATAGCACCCTTGACTAA+AGG | 0.527516 | 8_1:-84377990 | Msa1220960:CDS |
AACACCAAATTGTGTCCCTA+TGG | 0.528253 | 8_1:+84376498 | None:intergenic |
TGCAATACAAATACACAAGC+AGG | 0.530340 | 8_1:-84376267 | Msa1220960:three_prime_UTR |
ATTGTGTCCCTATGGTCCTA+AGG | 0.541144 | 8_1:+84376506 | None:intergenic |
ATCGACAACTATTCCTCTGA+TGG | 0.541822 | 8_1:-84378303 | Msa1220960:CDS |
TCATCCACTCGATGCGCATA+CGG | 0.543245 | 8_1:-84380996 | Msa1220960:exon |
AAGAGAAAGCAGACCTAATG+AGG | 0.544117 | 8_1:+84377376 | None:intergenic |
GAATGTTGTCTTCTGACCTC+AGG | 0.547502 | 8_1:-84377824 | Msa1220960:CDS |
CAGCCTCATGCAAGGAGTCA+TGG | 0.552331 | 8_1:+84378398 | None:intergenic |
GTTAATGGTGTATAGGAATG+GGG | 0.555143 | 8_1:-84378579 | Msa1220960:intron |
TGGAACGATCTTGAATTGAA+AGG | 0.556469 | 8_1:+84380904 | None:intergenic |
ATAATAGGGTTGTTGAGTCA+GGG | 0.558224 | 8_1:-84377548 | Msa1220960:CDS |
TGAAGAACGGATGATTGGAA+GGG | 0.558401 | 8_1:+84380948 | None:intergenic |
GCAGATGTAGGAATTGTGAT+TGG | 0.562607 | 8_1:-84376541 | Msa1220960:CDS |
GTTCTTTCATACTGCTGGTG+TGG | 0.562655 | 8_1:-84377402 | Msa1220960:CDS |
TAATACTGTGCTCTTTGGCA+AGG | 0.563964 | 8_1:+84378550 | None:intergenic |
CATGCGCCCAAATTCATGCT+AGG | 0.564247 | 8_1:-84376316 | Msa1220960:three_prime_UTR |
GAAAGCTCTTCCAATTGGAA+GGG | 0.564829 | 8_1:-84376421 | Msa1220960:CDS |
GAGCGTTTGATTCTTCAGGA+TGG | 0.565677 | 8_1:-84377483 | Msa1220960:CDS |
ACATAGAGAAGATGGATTCA+CGG | 0.572125 | 8_1:+84380803 | None:intergenic |
ATAGAAGATGTAAAGCGCGC+TGG | 0.574979 | 8_1:-84377507 | Msa1220960:CDS |
TGGTGTATAGGAATGGGGAT+TGG | 0.575334 | 8_1:-84378574 | Msa1220960:intron |
GATGACGATGACGATAAGCT+TGG | 0.577286 | 8_1:-84379232 | Msa1220960:CDS |
ATGATTTCATAGGTATGAGT+CGG | 0.580799 | 8_1:-84379269 | Msa1220960:intron |
GTTCAAGCCTTAGGACCATA+GGG | 0.581445 | 8_1:-84376513 | Msa1220960:CDS |
AGAGAAATAAGAGAGACAGC+AGG | 0.584475 | 8_1:+84376215 | None:intergenic |
AGATATGTGAAGTTTCAGAC+CGG | 0.589399 | 8_1:-84375823 | Msa1220960:three_prime_UTR |
TTCTGACCTCAGGAACACAT+GGG | 0.589740 | 8_1:-84377814 | Msa1220960:CDS |
TATGACGGATCTGTTTCTAC+CGG | 0.591731 | 8_1:-84376703 | Msa1220960:CDS |
AGCTTGGACTCTCTCAGTTG+AGG | 0.591841 | 8_1:-84379216 | Msa1220960:CDS |
CACCTTCTTAACAATGTCAC+CGG | 0.597188 | 8_1:+84376684 | None:intergenic |
GTACTCACCCGTATTGCAAG+TGG | 0.597239 | 8_1:-84378326 | Msa1220960:CDS |
TTCGAAATGAGATTGAAGAA+CGG | 0.598266 | 8_1:+84380935 | None:intergenic |
GCTATAGTTGGCTGAAAGAG+TGG | 0.601212 | 8_1:+84378005 | None:intergenic |
GCAGTTGCACCAGCAGCAGG+AGG | 0.604817 | 8_1:-84381097 | Msa1220960:five_prime_UTR |
TAATAGGGTTGTTGAGTCAG+GGG | 0.605903 | 8_1:-84377547 | Msa1220960:CDS |
TTAACCAAGCCAGAAAACAA+TGG | 0.607882 | 8_1:+84376466 | None:intergenic |
GAGAGACAGCAGGCAATCTG+TGG | 0.609553 | 8_1:+84376225 | None:intergenic |
CGGTGACATTGTTAAGAAGG+TGG | 0.609806 | 8_1:-84376683 | Msa1220960:CDS |
GTTTACATTGGAGACTCGGT+GGG | 0.614786 | 8_1:-84376586 | Msa1220960:CDS |
GTGCCATGACTCCTTGCATG+AGG | 0.617970 | 8_1:-84378401 | Msa1220960:CDS |
GCTAACGAGTTCAGTTATGA+CGG | 0.620110 | 8_1:-84376718 | Msa1220960:CDS |
CATCTTGAGCGATGTAATGG+CGG | 0.622829 | 8_1:+84380728 | None:intergenic |
AAGGCATACAGCCTCATGCA+AGG | 0.640683 | 8_1:+84378390 | None:intergenic |
ACCACCGTATGCGCATCGAG+TGG | 0.641894 | 8_1:+84380992 | None:intergenic |
TCCACTCGATGCGCATACGG+TGG | 0.643704 | 8_1:-84380993 | Msa1220960:exon |
GAGAACCCCATGTGTTCCTG+AGG | 0.647944 | 8_1:+84377808 | None:intergenic |
TGTTTACATTGGAGACTCGG+TGG | 0.650130 | 8_1:-84376587 | Msa1220960:CDS |
AACCACTAGAGAAATCAGAA+TGG | 0.651741 | 8_1:+84376162 | None:intergenic |
GGTGGAGTCTCCCATTGACA+AGG | 0.664349 | 8_1:-84376665 | Msa1220960:CDS |
CATCGAGTGGATGAAACACA+CGG | 0.665790 | 8_1:+84381005 | None:intergenic |
ACAAACCTGGAAACCATCAG+AGG | 0.677140 | 8_1:+84378290 | None:intergenic |
ACATACGTAAGTCACTCAGC+CGG | 0.678963 | 8_1:+84375804 | None:intergenic |
GATGTTGCAATTCAGAGACA+TGG | 0.679874 | 8_1:-84376187 | Msa1220960:three_prime_UTR |
GTATGAAAGAACATGCACAT+TGG | 0.680060 | 8_1:+84377413 | None:intergenic |
TCTGACCTCAGGAACACATG+GGG | 0.685059 | 8_1:-84377813 | Msa1220960:CDS |
TCTATCCAAACAGTATACAG+AGG | 0.708451 | 8_1:-84377787 | Msa1220960:CDS |
AATACAAATACACAAGCAGG+TGG | 0.724838 | 8_1:-84376264 | Msa1220960:three_prime_UTR |
CGAGTGGATGAAACACACGG+CGG | 0.899207 | 8_1:+84381008 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATACTATATTTTCATAAAAA+TGG | + | chr8_1:84376653-84376672 | None:intergenic | 10.0% |
!!! | TTTTTAAAATATTACAGTAT+GGG | + | chr8_1:84376821-84376840 | None:intergenic | 10.0% |
!!! | ATTTTTAAAATATTACAGTA+TGG | + | chr8_1:84376822-84376841 | None:intergenic | 10.0% |
!! | AATTAATCACTAATAAATTT+AGG | - | chr8_1:84376995-84377014 | Msa1220960:intron | 10.0% |
!!! | TTGTTTGAAAATATTTTAAA+AGG | + | chr8_1:84377195-84377214 | None:intergenic | 10.0% |
!!! | TTTAAAATATTTTCAAACAA+TGG | - | chr8_1:84377195-84377214 | Msa1220960:intron | 10.0% |
!! | TTATTCTTATATTTGAATTT+AGG | - | chr8_1:84378749-84378768 | Msa1220960:intron | 10.0% |
!! | AAATAAATTTATAAGACAAT+AGG | + | chr8_1:84380124-84380143 | None:intergenic | 10.0% |
!!! | AAATTTATTTTCCTAATTTT+TGG | - | chr8_1:84380134-84380153 | Msa1220960:intron | 10.0% |
!!! | TTTTAAAATATTACAGTATG+GGG | + | chr8_1:84376820-84376839 | None:intergenic | 15.0% |
!! | TTATTGAAAGAATTACATTA+TGG | + | chr8_1:84376954-84376973 | None:intergenic | 15.0% |
!! | AATAAATTTATTGTCTCATT+TGG | + | chr8_1:84377057-84377076 | None:intergenic | 15.0% |
!!! | AAGTTTTTCAAAAATTGAAA+AGG | + | chr8_1:84377990-84378009 | None:intergenic | 15.0% |
!! | CAAAAATTTCATATAACTAT+TGG | + | chr8_1:84379913-84379932 | None:intergenic | 15.0% |
!! | AAAAAATTAACTGTTTACAT+TGG | - | chr8_1:84380307-84380326 | Msa1220960:intron | 15.0% |
!! | AAGAAACTATTGAAAGTTTA+TGG | - | chr8_1:84377574-84377593 | Msa1220960:CDS | 20.0% |
!! | AAAGTTTATGGTAAGTAATT+TGG | - | chr8_1:84377586-84377605 | Msa1220960:CDS | 20.0% |
!! | TTGAATTTCTATGATTTCAT+AGG | - | chr8_1:84377626-84377645 | Msa1220960:intron | 20.0% |
!!! | TCGTGTTATAAAGTATTTAA+GGG | - | chr8_1:84377851-84377870 | Msa1220960:CDS | 20.0% |
!!! | ATAATTTTCAACTTGTGAAT+GGG | - | chr8_1:84377890-84377909 | Msa1220960:CDS | 20.0% |
!! | CTTATAATTTATTTATCGAG+AGG | - | chr8_1:84378092-84378111 | Msa1220960:CDS | 20.0% |
!! | AAACGAAAAAAACAACAAAT+GGG | + | chr8_1:84378139-84378158 | None:intergenic | 20.0% |
!! | TAAACGAAAAAAACAACAAA+TGG | + | chr8_1:84378140-84378159 | None:intergenic | 20.0% |
!! | TATCAACTTAAACATAAACA+TGG | + | chr8_1:84378174-84378193 | None:intergenic | 20.0% |
!!! | TTATTGTGGTTTTATGTTAA+TGG | - | chr8_1:84378311-84378330 | Msa1220960:CDS | 20.0% |
!! | ATTAAATGTATATTTGACCA+AGG | + | chr8_1:84378700-84378719 | None:intergenic | 20.0% |
!! | GTCAAATATACATTTAATCA+TGG | - | chr8_1:84378702-84378721 | Msa1220960:intron | 20.0% |
!! | AAGGATAAAAAAACTCAATA+TGG | + | chr8_1:84379850-84379869 | None:intergenic | 20.0% |
!!! | TTTTTATCCTTCAATTTGTT+AGG | - | chr8_1:84379859-84379878 | Msa1220960:intron | 20.0% |
!!! | TTTTATCCTTCAATTTGTTA+GGG | - | chr8_1:84379860-84379879 | Msa1220960:intron | 20.0% |
!! | ATTTATGCATATGAATTTCA+AGG | + | chr8_1:84380981-84381000 | None:intergenic | 20.0% |
! | CATTATATGCTATGTTACAT+AGG | + | chr8_1:84376895-84376914 | None:intergenic | 25.0% |
!! | TTTTGTTCACTGTCTTAAAA+CGG | - | chr8_1:84377097-84377116 | Msa1220960:intron | 25.0% |
!! | TTTTCAAACAATGGATATAG+TGG | - | chr8_1:84377204-84377223 | Msa1220960:intron | 25.0% |
! | TGACAACACTAATTAGAATA+TGG | - | chr8_1:84377256-84377275 | Msa1220960:intron | 25.0% |
! | AACTGTATGTACATTTATTG+AGG | - | chr8_1:84377465-84377484 | Msa1220960:CDS | 25.0% |
!!! | TTTCTGTCCTTTTTTAAGAA+AGG | - | chr8_1:84377551-84377570 | Msa1220960:CDS | 25.0% |
! | GTTTCTTCCTTTCTTAAAAA+AGG | + | chr8_1:84377561-84377580 | None:intergenic | 25.0% |
!! | CTCGTGTTATAAAGTATTTA+AGG | - | chr8_1:84377850-84377869 | Msa1220960:CDS | 25.0% |
!! | CGTGTTATAAAGTATTTAAG+GGG | - | chr8_1:84377852-84377871 | Msa1220960:CDS | 25.0% |
!! | CATAATTTTCAACTTGTGAA+TGG | - | chr8_1:84377889-84377908 | Msa1220960:CDS | 25.0% |
! | TATGCAACCATTAAGTATTT+GGG | + | chr8_1:84377922-84377941 | None:intergenic | 25.0% |
!!! | CATAATAGTGAAGTTTTATG+TGG | - | chr8_1:84378023-84378042 | Msa1220960:CDS | 25.0% |
! | TTATTTATCGAGAGGAAAAT+TGG | - | chr8_1:84378100-84378119 | Msa1220960:CDS | 25.0% |
! | TATTTATCGAGAGGAAAATT+GGG | - | chr8_1:84378101-84378120 | Msa1220960:CDS | 25.0% |
! | ACATAAAACCACAATAACAT+AGG | + | chr8_1:84378308-84378327 | None:intergenic | 25.0% |
!! | GTTTTATGTTAATGGTGTAT+AGG | - | chr8_1:84378319-84378338 | Msa1220960:CDS | 25.0% |
!! | TAAAGTATAAGCAGCAATTT+TGG | + | chr8_1:84378483-84378502 | None:intergenic | 25.0% |
!! | AAAATTGCTGCTTATACTTT+AGG | - | chr8_1:84378482-84378501 | Msa1220960:CDS | 25.0% |
! | AGTGCATGTTAAATCAAAAT+CGG | + | chr8_1:84378976-84378995 | None:intergenic | 25.0% |
! | GAGAATCATCATACATTTAT+TGG | + | chr8_1:84379177-84379196 | None:intergenic | 25.0% |
!!! | TCATTTTCAATGTTAGTTTG+CGG | - | chr8_1:84379618-84379637 | Msa1220960:intron | 25.0% |
! | GTGTATAAAATAGCCTATTT+AGG | - | chr8_1:84379724-84379743 | Msa1220960:intron | 25.0% |
!!! | TGTGATGTTTTTTGAAGTTT+TGG | - | chr8_1:84379796-84379815 | Msa1220960:intron | 25.0% |
!!! | ATGTTTTTTGAAGTTTTGGT+TGG | - | chr8_1:84379800-84379819 | Msa1220960:intron | 25.0% |
! | TTATCAATTCCAGTAGATTA+TGG | - | chr8_1:84381050-84381069 | Msa1220960:five_prime_UTR | 25.0% |
! | TATCAATTCCAGTAGATTAT+GGG | - | chr8_1:84381051-84381070 | Msa1220960:five_prime_UTR | 25.0% |
TTCGAAATGAGATTGAAGAA+CGG | + | chr8_1:84375973-84375992 | None:intergenic | 30.0% | |
GAAGCTAAAGAGATAACAAA+AGG | + | chr8_1:84376133-84376152 | None:intergenic | 30.0% | |
! | TTTGTTATCTCTTTAGCTTC+CGG | - | chr8_1:84376133-84376152 | Msa1220960:three_prime_UTR | 30.0% |
! | CATTATCGCTAATCAAGTTT+TGG | - | chr8_1:84376270-84376289 | Msa1220960:three_prime_UTR | 30.0% |
AAAATGGTGAATTACGCATA+CGG | - | chr8_1:84376606-84376625 | Msa1220960:CDS | 30.0% | |
AAAAAGTCGAAAACTAGAGT+TGG | + | chr8_1:84376710-84376729 | None:intergenic | 30.0% | |
AAATTGTTGTATTCTCGTAC+CGG | - | chr8_1:84376838-84376857 | Msa1220960:intron | 30.0% | |
TATGCTATGTTACATAGGTA+CGG | + | chr8_1:84376890-84376909 | None:intergenic | 30.0% | |
TGTCTTAAAACGGAGAAAAA+CGG | - | chr8_1:84377107-84377126 | Msa1220960:intron | 30.0% | |
TTAGAATATGGTTGTTGTCT+TGG | - | chr8_1:84377268-84377287 | Msa1220960:intron | 30.0% | |
! | ATAATCAAACTCTCCAGTTT+TGG | + | chr8_1:84377438-84377457 | None:intergenic | 30.0% |
AACTGGAGAGTTTGATTATT+TGG | - | chr8_1:84377439-84377458 | Msa1220960:CDS | 30.0% | |
! | ACATTTATTGAGGTGAGTTT+TGG | - | chr8_1:84377475-84377494 | Msa1220960:CDS | 30.0% |
ATGATTTCATAGGTATGAGT+CGG | - | chr8_1:84377636-84377655 | Msa1220960:intron | 30.0% | |
! | TAAAGTATTTAAGGGGAAGA+AGG | - | chr8_1:84377859-84377878 | Msa1220960:CDS | 30.0% |
GTATGCAACCATTAAGTATT+TGG | + | chr8_1:84377923-84377942 | None:intergenic | 30.0% | |
TGGTTGCATACTAATAGTAA+AGG | - | chr8_1:84377932-84377951 | Msa1220960:CDS | 30.0% | |
!! | ATAGTGAAGTTTTATGTGGT+TGG | - | chr8_1:84378027-84378046 | Msa1220960:CDS | 30.0% |
ATGTTAATGGTGTATAGGAA+TGG | - | chr8_1:84378324-84378343 | Msa1220960:CDS | 30.0% | |
TGTTAATGGTGTATAGGAAT+GGG | - | chr8_1:84378325-84378344 | Msa1220960:CDS | 30.0% | |
TAAGTATACAGACTTTCTGT+TGG | - | chr8_1:84378391-84378410 | Msa1220960:CDS | 30.0% | |
!!! | GCAATTTTGGTTTTCTCAAA+TGG | + | chr8_1:84378470-84378489 | None:intergenic | 30.0% |
! | CTTGAACTTTTTACCAAGAA+AGG | + | chr8_1:84378537-84378556 | None:intergenic | 30.0% |
CTTTCTTGGTAAAAAGTTCA+AGG | - | chr8_1:84378535-84378554 | Msa1220960:CDS | 30.0% | |
!! | TTTGATACTATTTTGAGCCT+TGG | - | chr8_1:84378680-84378699 | Msa1220960:intron | 30.0% |
ATAAGAATAACTGAGTAGCT+GGG | + | chr8_1:84378739-84378758 | None:intergenic | 30.0% | |
TATAAGAATAACTGAGTAGC+TGG | + | chr8_1:84378740-84378759 | None:intergenic | 30.0% | |
AAACTAAGTGTCTCTTTAAC+TGG | - | chr8_1:84378804-84378823 | Msa1220960:intron | 30.0% | |
!! | CATTGAAAAGCTTTATTACC+AGG | - | chr8_1:84378842-84378861 | Msa1220960:intron | 30.0% |
ATCATCATACATTTATTGGC+AGG | + | chr8_1:84379173-84379192 | None:intergenic | 30.0% | |
! | AAAATAGCCTATTTAGGACT+TGG | - | chr8_1:84379730-84379749 | Msa1220960:intron | 30.0% |
!!! | TTTGAAGTTTTGGTTGGAAT+AGG | - | chr8_1:84379806-84379825 | Msa1220960:intron | 30.0% |
! | TTTTAGCCTAGCATGAATTT+GGG | + | chr8_1:84380598-84380617 | None:intergenic | 30.0% |
!! | TTTTTAGCCTAGCATGAATT+TGG | + | chr8_1:84380599-84380618 | None:intergenic | 30.0% |
! | TTTCAAATGCTTGTTAGATC+AGG | - | chr8_1:84380851-84380870 | Msa1220960:CDS | 30.0% |
! | ACTGCTGTTCCATAATTTTA+AGG | - | chr8_1:84380918-84380937 | Msa1220960:CDS | 30.0% |
CTGCTGAATCCTTAAAATTA+TGG | + | chr8_1:84380930-84380949 | None:intergenic | 30.0% | |
GAGTCAACTAAAAAATACAC+AGG | + | chr8_1:84380959-84380978 | None:intergenic | 30.0% | |
GCAGCTTCATTATAGATTAA+TGG | - | chr8_1:84381013-84381032 | Msa1220960:five_prime_UTR | 30.0% | |
AAAAAAGTCCCATAATCTAC+TGG | + | chr8_1:84381062-84381081 | None:intergenic | 30.0% | |
!! | TGATTGGAAGGGTTTTGATA+GGG | + | chr8_1:84375949-84375968 | None:intergenic | 35.0% |
!! | ATGATTGGAAGGGTTTTGAT+AGG | + | chr8_1:84375950-84375969 | None:intergenic | 35.0% |
TGGAACGATCTTGAATTGAA+AGG | + | chr8_1:84376004-84376023 | None:intergenic | 35.0% | |
! | ACATAGAGAAGATGGATTCA+CGG | + | chr8_1:84376105-84376124 | None:intergenic | 35.0% |
! | AGAATCGATCTTCAAGTTAC+CGG | + | chr8_1:84376155-84376174 | None:intergenic | 35.0% |
AAATAGCTGTTATAGCGTTG+CGG | - | chr8_1:84376383-84376402 | Msa1220960:CDS | 35.0% | |
CAAAATATCAAAGTGCGTCA+AGG | - | chr8_1:84376449-84376468 | Msa1220960:CDS | 35.0% | |
GAATACTGCGTTACAATTTG+CGG | - | chr8_1:84376494-84376513 | Msa1220960:CDS | 35.0% | |
ATCATATAATCTCCGAAGCA+TGG | - | chr8_1:84376575-84376594 | Msa1220960:CDS | 35.0% | |
TCATATAATCTCCGAAGCAT+GGG | - | chr8_1:84376576-84376595 | Msa1220960:CDS | 35.0% | |
! | TTTTACAAGTACCCATGCTT+CGG | + | chr8_1:84376590-84376609 | None:intergenic | 35.0% |
AAGCATGGGTACTTGTAAAA+TGG | - | chr8_1:84376590-84376609 | Msa1220960:CDS | 35.0% | |
ATGCTATGTTACATAGGTAC+GGG | + | chr8_1:84376889-84376908 | None:intergenic | 35.0% | |
AAAATCACAAGCAACAGGTA+GGG | + | chr8_1:84377080-84377099 | None:intergenic | 35.0% | |
AAAAATCACAAGCAACAGGT+AGG | + | chr8_1:84377081-84377100 | None:intergenic | 35.0% | |
GAACAAAAATCACAAGCAAC+AGG | + | chr8_1:84377085-84377104 | None:intergenic | 35.0% | |
AAAACGGAGAAAAACGGTAT+CGG | - | chr8_1:84377113-84377132 | Msa1220960:intron | 35.0% | |
ACAGTTCGTTACTGCAAAAT+CGG | + | chr8_1:84377163-84377182 | None:intergenic | 35.0% | |
AATATGGTTGTTGTCTTGGA+TGG | - | chr8_1:84377272-84377291 | Msa1220960:intron | 35.0% | |
! | GTTTTCTCAGTAACCAAAAC+TGG | - | chr8_1:84377422-84377441 | Msa1220960:CDS | 35.0% |
!! | GTTGAGGAAGAATGTTTTAG+AGG | - | chr8_1:84377705-84377724 | Msa1220960:intron | 35.0% |
!! | TAAAGGTAAGGCATTTTTCC+CGG | - | chr8_1:84377752-84377771 | Msa1220960:CDS | 35.0% |
AAAAAAACCTGCCCCAATTA+AGG | + | chr8_1:84377787-84377806 | None:intergenic | 35.0% | |
ATTGCCTTCTAAATGCTGAT+TGG | - | chr8_1:84377961-84377980 | Msa1220960:CDS | 35.0% | |
TATAAGTTCTTGTTCCCCAT+CGG | + | chr8_1:84378078-84378097 | None:intergenic | 35.0% | |
ATAGGCTGTATGAGTGAAAA+GGG | + | chr8_1:84378290-84378309 | None:intergenic | 35.0% | |
TCATACAGCCTATGTTATTG+TGG | - | chr8_1:84378297-84378316 | Msa1220960:CDS | 35.0% | |
GTTAATGGTGTATAGGAATG+GGG | - | chr8_1:84378326-84378345 | Msa1220960:CDS | 35.0% | |
TGAGTTAATACTGTGCTCTT+TGG | + | chr8_1:84378363-84378382 | None:intergenic | 35.0% | |
ATTGAAGGACTGAAAAGTTC+TGG | - | chr8_1:84378431-84378450 | Msa1220960:CDS | 35.0% | |
TAGTATCAAAGCAACCACAA+AGG | + | chr8_1:84378670-84378689 | None:intergenic | 35.0% | |
TAAGAATAACTGAGTAGCTG+GGG | + | chr8_1:84378738-84378757 | None:intergenic | 35.0% | |
! | TAGTTTGTCGAGCAATTCTT+CGG | + | chr8_1:84378790-84378809 | None:intergenic | 35.0% |
TATAGCAATTTCTGCCAAGA+TGG | + | chr8_1:84379015-84379034 | None:intergenic | 35.0% | |
ATTCGAGCTATTTGATCTTC+AGG | + | chr8_1:84379065-84379084 | None:intergenic | 35.0% | |
TCTATCCAAACAGTATACAG+AGG | - | chr8_1:84379118-84379137 | Msa1220960:intron | 35.0% | |
ATACTCCTCTGTATACTGTT+TGG | + | chr8_1:84379126-84379145 | None:intergenic | 35.0% | |
TCTCTGCATTCTTTCTACTA+TGG | - | chr8_1:84379193-84379212 | Msa1220960:CDS | 35.0% | |
TCGAGAACTCAGCAAATAAT+AGG | - | chr8_1:84379342-84379361 | Msa1220960:intron | 35.0% | |
CGAGAACTCAGCAAATAATA+GGG | - | chr8_1:84379343-84379362 | Msa1220960:intron | 35.0% | |
AATAATAGGGTTGTTGAGTC+AGG | - | chr8_1:84379356-84379375 | Msa1220960:intron | 35.0% | |
ATAATAGGGTTGTTGAGTCA+GGG | - | chr8_1:84379357-84379376 | Msa1220960:intron | 35.0% | |
GTATGAAAGAACATGCACAT+TGG | + | chr8_1:84379495-84379514 | None:intergenic | 35.0% | |
GAGAACTAAATCACATCTCA+TGG | + | chr8_1:84379572-84379591 | None:intergenic | 35.0% | |
CAACAATCCAAGTCCTAAAT+AGG | + | chr8_1:84379740-84379759 | None:intergenic | 35.0% | |
! | CTATTTAGGACTTGGATTGT+TGG | - | chr8_1:84379738-84379757 | Msa1220960:intron | 35.0% |
!! | TCCTTCAATTTGTTAGGGAT+AGG | - | chr8_1:84379865-84379884 | Msa1220960:intron | 35.0% |
TTAGTGTGATGCAAAGCAAT+TGG | - | chr8_1:84379933-84379952 | Msa1220960:intron | 35.0% | |
TAGTGTGATGCAAAGCAATT+GGG | - | chr8_1:84379934-84379953 | Msa1220960:intron | 35.0% | |
AAACACGAATGAAGAACTCA+TGG | + | chr8_1:84379985-84380004 | None:intergenic | 35.0% | |
CAAAGCAGGTAACTCAAAAA+GGG | + | chr8_1:84380014-84380033 | None:intergenic | 35.0% | |
TCAAAGCAGGTAACTCAAAA+AGG | + | chr8_1:84380015-84380034 | None:intergenic | 35.0% | |
TGTGATTCCTAGCATATCTT+GGG | - | chr8_1:84380042-84380061 | Msa1220960:intron | 35.0% | |
AAATCAGCTGGCCAAAAATT+AGG | + | chr8_1:84380148-84380167 | None:intergenic | 35.0% | |
TCCATCTCAATTAAATCAGC+TGG | + | chr8_1:84380160-84380179 | None:intergenic | 35.0% | |
CCAATATATTACGAAAAGCC+TGG | + | chr8_1:84380267-84380286 | None:intergenic | 35.0% | |
! | CCAGGCTTTTCGTAATATAT+TGG | - | chr8_1:84380264-84380283 | Msa1220960:intron | 35.0% |
AACTGTTTACATTGGAGACT+CGG | - | chr8_1:84380315-84380334 | Msa1220960:intron | 35.0% | |
! | TCATTTGTCCCATTGTTTTC+TGG | - | chr8_1:84380430-84380449 | Msa1220960:intron | 35.0% |
TAACCAAGCCAGAAAACAAT+GGG | + | chr8_1:84380441-84380460 | None:intergenic | 35.0% | |
TTAACCAAGCCAGAAAACAA+TGG | + | chr8_1:84380442-84380461 | None:intergenic | 35.0% | |
TTCTTTACACAGTCTCTAGT+TGG | - | chr8_1:84380518-84380537 | Msa1220960:intron | 35.0% | |
TCTTTACACAGTCTCTAGTT+GGG | - | chr8_1:84380519-84380538 | Msa1220960:intron | 35.0% | |
!! | TGAAGTGCATGCTTTTGTTT+TGG | - | chr8_1:84380543-84380562 | Msa1220960:intron | 35.0% |
!!! | GAAGTGCATGCTTTTGTTTT+GGG | - | chr8_1:84380544-84380563 | Msa1220960:intron | 35.0% |
TGCAATACAAATACACAAGC+AGG | - | chr8_1:84380638-84380657 | Msa1220960:intron | 35.0% | |
AATACAAATACACAAGCAGG+TGG | - | chr8_1:84380641-84380660 | Msa1220960:intron | 35.0% | |
! | CAGGTGGCTAATTTTATAAG+CGG | - | chr8_1:84380657-84380676 | Msa1220960:intron | 35.0% |
! | GTCTCTCTTATTTCTCTTTC+AGG | - | chr8_1:84380696-84380715 | Msa1220960:intron | 35.0% |
AACCACTAGAGAAATCAGAA+TGG | + | chr8_1:84380746-84380765 | None:intergenic | 35.0% | |
! | TGTCTGAAATTTCTCATTCC+TGG | + | chr8_1:84380825-84380844 | None:intergenic | 35.0% |
! | GTGTTGTACTGGTATTTAGT+AGG | - | chr8_1:84380893-84380912 | Msa1220960:CDS | 35.0% |
AGATATGTGAAGTTTCAGAC+CGG | - | chr8_1:84381082-84381101 | Msa1220960:five_prime_UTR | 35.0% | |
TGAAGAACGGATGATTGGAA+GGG | + | chr8_1:84375960-84375979 | None:intergenic | 40.0% | |
TTGAAGAACGGATGATTGGA+AGG | + | chr8_1:84375961-84375980 | None:intergenic | 40.0% | |
GAGATTGAAGAACGGATGAT+TGG | + | chr8_1:84375965-84375984 | None:intergenic | 40.0% | |
! | CCATTTGGATTCGGTTTCTA+TGG | + | chr8_1:84376024-84376043 | None:intergenic | 40.0% |
CCATAGAAACCGAATCCAAA+TGG | - | chr8_1:84376021-84376040 | Msa1220960:three_prime_UTR | 40.0% | |
! | GAATTGCTGCCATTTGGATT+CGG | + | chr8_1:84376033-84376052 | None:intergenic | 40.0% |
GATTGTGAATTGCTGCCATT+TGG | + | chr8_1:84376039-84376058 | None:intergenic | 40.0% | |
ATTCACAATCACAGTGAAGC+TGG | - | chr8_1:84376049-84376068 | Msa1220960:three_prime_UTR | 40.0% | |
! | AGGAGTGTACATAGAGAAGA+TGG | + | chr8_1:84376113-84376132 | None:intergenic | 40.0% |
GAACATCTTGAGCGATGTAA+TGG | + | chr8_1:84376183-84376202 | None:intergenic | 40.0% | |
! | CGTCAAGGATTTTGCGATTT+CGG | - | chr8_1:84376464-84376483 | Msa1220960:CDS | 40.0% |
! | CACAACAAAAGGGTATAGGT+AGG | + | chr8_1:84377139-84377158 | None:intergenic | 40.0% |
! | CTACCTATACCCTTTTGTTG+TGG | - | chr8_1:84377137-84377156 | Msa1220960:intron | 40.0% |
CAAAATCGGCCACAACAAAA+GGG | + | chr8_1:84377149-84377168 | None:intergenic | 40.0% | |
AGTAAGTGCAACTGAACTTG+TGG | - | chr8_1:84377320-84377339 | Msa1220960:intron | 40.0% | |
AAAAGTAGTGCAAGGGAGAT+GGG | + | chr8_1:84377533-84377552 | None:intergenic | 40.0% | |
AAAAAGTAGTGCAAGGGAGA+TGG | + | chr8_1:84377534-84377553 | None:intergenic | 40.0% | |
GGACAGAAAAAGTAGTGCAA+GGG | + | chr8_1:84377540-84377559 | None:intergenic | 40.0% | |
AGGACAGAAAAAGTAGTGCA+AGG | + | chr8_1:84377541-84377560 | None:intergenic | 40.0% | |
ATGACTCACTGGTAAAGGTA+AGG | - | chr8_1:84377740-84377759 | Msa1220960:intron | 40.0% | |
TTTCAACTTGTGAATGGGAC+TGG | - | chr8_1:84377895-84377914 | Msa1220960:CDS | 40.0% | |
! | GACTGGTCCCAAATACTTAA+TGG | - | chr8_1:84377912-84377931 | Msa1220960:CDS | 40.0% |
GAGTCCAATCAGCATTTAGA+AGG | + | chr8_1:84377968-84377987 | None:intergenic | 40.0% | |
CATAGGCTGTATGAGTGAAA+AGG | + | chr8_1:84378291-84378310 | None:intergenic | 40.0% | |
TAATACTGTGCTCTTTGGCA+AGG | + | chr8_1:84378358-84378377 | None:intergenic | 40.0% | |
TTGTCGATCCACTTGCAATA+CGG | + | chr8_1:84378590-84378609 | None:intergenic | 40.0% | |
ATCGACAACTATTCCTCTGA+TGG | - | chr8_1:84378602-84378621 | Msa1220960:intron | 40.0% | |
TACTGTCAACATGACAAACC+TGG | + | chr8_1:84378631-84378650 | None:intergenic | 40.0% | |
AGGTTTGTCATGTTGACAGT+AGG | - | chr8_1:84378630-84378649 | Msa1220960:intron | 40.0% | |
GGTTTGTCATGTTGACAGTA+GGG | - | chr8_1:84378631-84378650 | Msa1220960:intron | 40.0% | |
ACCACAAAGGCTATATGGTA+TGG | + | chr8_1:84378657-84378676 | None:intergenic | 40.0% | |
AAGCAACCACAAAGGCTATA+TGG | + | chr8_1:84378662-84378681 | None:intergenic | 40.0% | |
CTATTTCAAGCTTCATTGCC+TGG | + | chr8_1:84378863-84378882 | None:intergenic | 40.0% | |
!! | TTAGTCAAGGGTGCTATAGT+TGG | + | chr8_1:84378915-84378934 | None:intergenic | 40.0% |
ACTATAGCACCCTTGACTAA+AGG | - | chr8_1:84378915-84378934 | Msa1220960:intron | 40.0% | |
GGGTTATGTCCTTTAGTCAA+GGG | + | chr8_1:84378927-84378946 | None:intergenic | 40.0% | |
AGGGTTATGTCCTTTAGTCA+AGG | + | chr8_1:84378928-84378947 | None:intergenic | 40.0% | |
!! | TGTTGATTCATCTGCCATCT+TGG | - | chr8_1:84378998-84379017 | Msa1220960:intron | 40.0% |
TTGATCTTCAGGCTGATTGT+CGG | + | chr8_1:84379054-84379073 | None:intergenic | 40.0% | |
TTTCCACTGCAAATCACACA+AGG | + | chr8_1:84379274-84379293 | None:intergenic | 40.0% | |
TAATAGGGTTGTTGAGTCAG+GGG | - | chr8_1:84379358-84379377 | Msa1220960:intron | 40.0% | |
TGCATGTTCTTTCATACTGC+TGG | - | chr8_1:84379498-84379517 | Msa1220960:intron | 40.0% | |
AAGAGAAAGCAGACCTAATG+AGG | + | chr8_1:84379532-84379551 | None:intergenic | 40.0% | |
ATTAGGTCTGCTTTCTCTTC+AGG | - | chr8_1:84379533-84379552 | Msa1220960:intron | 40.0% | |
TTTATACACCCACCAAGACT+AGG | + | chr8_1:84379713-84379732 | None:intergenic | 40.0% | |
ACATGAGTCTCCTTTCATCT+CGG | - | chr8_1:84379764-84379783 | Msa1220960:intron | 40.0% | |
GCCTATCCCTAACAAATTGA+AGG | + | chr8_1:84379869-84379888 | None:intergenic | 40.0% | |
AGTGTGATGCAAAGCAATTG+GGG | - | chr8_1:84379935-84379954 | Msa1220960:intron | 40.0% | |
ATCACAGATATGCTCAAAGC+AGG | + | chr8_1:84380028-84380047 | None:intergenic | 40.0% | |
CTGTGATTCCTAGCATATCT+TGG | - | chr8_1:84380041-84380060 | Msa1220960:intron | 40.0% | |
ATTCCTAGCATATCTTGGGT+TGG | - | chr8_1:84380046-84380065 | Msa1220960:intron | 40.0% | |
GCCAAATCTTCGCTGTTAAA+CGG | - | chr8_1:84380068-84380087 | Msa1220960:intron | 40.0% | |
TCCGTTTAACAGCGAAGATT+TGG | + | chr8_1:84380072-84380091 | None:intergenic | 40.0% | |
!! | GCTGTTAAACGGATTGAAGT+TGG | - | chr8_1:84380079-84380098 | Msa1220960:intron | 40.0% |
! | GCCAGCTGATTTAATTGAGA+TGG | - | chr8_1:84380156-84380175 | Msa1220960:intron | 40.0% |
GCTAACGAGTTCAGTTATGA+CGG | - | chr8_1:84380187-84380206 | Msa1220960:intron | 40.0% | |
!! | TATGACGGATCTGTTTCTAC+CGG | - | chr8_1:84380202-84380221 | Msa1220960:intron | 40.0% |
TACCGGTGACATTGTTAAGA+AGG | - | chr8_1:84380219-84380238 | Msa1220960:intron | 40.0% | |
CACCTTCTTAACAATGTCAC+CGG | + | chr8_1:84380224-84380243 | None:intergenic | 40.0% | |
TGTCTACTTGAAGCAGATGT+AGG | - | chr8_1:84380352-84380371 | Msa1220960:intron | 40.0% | |
GCAGATGTAGGAATTGTGAT+TGG | - | chr8_1:84380364-84380383 | Msa1220960:intron | 40.0% | |
! | TTGGTTCAAGTTCAAGCCTT+AGG | - | chr8_1:84380383-84380402 | Msa1220960:intron | 40.0% |
AACACCAAATTGTGTCCCTA+TGG | + | chr8_1:84380410-84380429 | None:intergenic | 40.0% | |
ACGAAGAAAGCTCTTCCAAT+TGG | - | chr8_1:84380479-84380498 | Msa1220960:intron | 40.0% | |
AGAAAGCTCTTCCAATTGGA+AGG | - | chr8_1:84380483-84380502 | Msa1220960:intron | 40.0% | |
GAAAGCTCTTCCAATTGGAA+GGG | - | chr8_1:84380484-84380503 | Msa1220960:intron | 40.0% | |
TCCAATTGGAAGGGTTTATC+TGG | - | chr8_1:84380493-84380512 | Msa1220960:intron | 40.0% | |
AGAGAAATAAGAGAGACAGC+AGG | + | chr8_1:84380693-84380712 | None:intergenic | 40.0% | |
GATGTTGCAATTCAGAGACA+TGG | - | chr8_1:84380718-84380737 | Msa1220960:CDS | 40.0% | |
TGCCATTCTGATTTCTCTAG+TGG | - | chr8_1:84380741-84380760 | Msa1220960:CDS | 40.0% | |
TTTCTCATTCCTGGCATGAT+TGG | + | chr8_1:84380816-84380835 | None:intergenic | 40.0% | |
!! | CAGACTTTGAAGTGTTGTAC+TGG | - | chr8_1:84380882-84380901 | Msa1220960:CDS | 40.0% |
CATCGAGTGGATGAAACACA+CGG | + | chr8_1:84375903-84375922 | None:intergenic | 45.0% | |
!! | GGGTTTTGATAGGGTTTGGA+AGG | + | chr8_1:84375940-84375959 | None:intergenic | 45.0% |
!! | GGAAGGGTTTTGATAGGGTT+TGG | + | chr8_1:84375944-84375963 | None:intergenic | 45.0% |
CATCTTGAGCGATGTAATGG+CGG | + | chr8_1:84376180-84376199 | None:intergenic | 45.0% | |
TACAGTACCCGGTACAATAC+GGG | + | chr8_1:84376866-84376885 | None:intergenic | 45.0% | |
GTACAGTACCCGGTACAATA+CGG | + | chr8_1:84376867-84376886 | None:intergenic | 45.0% | |
GCAAAATCGGCCACAACAAA+AGG | + | chr8_1:84377150-84377169 | None:intergenic | 45.0% | |
AATGGATATAGTGGCGCCAT+AGG | - | chr8_1:84377213-84377232 | Msa1220960:intron | 45.0% | |
ATGGTTGTTGTCTTGGATGG+TGG | - | chr8_1:84377275-84377294 | Msa1220960:intron | 45.0% | |
GATGACGATGACGATAAGCT+TGG | - | chr8_1:84377673-84377692 | Msa1220960:intron | 45.0% | |
GATGCATGACTCACTGGTAA+AGG | - | chr8_1:84377735-84377754 | Msa1220960:intron | 45.0% | |
! | AGGCATTTTTCCCGGTAACA+TGG | - | chr8_1:84377760-84377779 | Msa1220960:CDS | 45.0% |
! | GGCATTTTTCCCGGTAACAT+GGG | - | chr8_1:84377761-84377780 | Msa1220960:CDS | 45.0% |
CAATTAAGGCCCATGTTACC+GGG | + | chr8_1:84377773-84377792 | None:intergenic | 45.0% | |
CCAATTAAGGCCCATGTTAC+CGG | + | chr8_1:84377774-84377793 | None:intergenic | 45.0% | |
CGGTAACATGGGCCTTAATT+GGG | - | chr8_1:84377772-84377791 | Msa1220960:CDS | 45.0% | |
GGTAACATGGGCCTTAATTG+GGG | - | chr8_1:84377773-84377792 | Msa1220960:CDS | 45.0% | |
TGGTGTATAGGAATGGGGAT+TGG | - | chr8_1:84378331-84378350 | Msa1220960:CDS | 45.0% | |
! | TTTCTGTTGGCTACTGCTTC+TGG | - | chr8_1:84378404-84378423 | Msa1220960:CDS | 45.0% |
! | TTCTGTTGGCTACTGCTTCT+GGG | - | chr8_1:84378405-84378424 | Msa1220960:CDS | 45.0% |
! | ACTGCTTCTGGGAAGATTGA+AGG | - | chr8_1:84378416-84378435 | Msa1220960:CDS | 45.0% |
ATGAGGCTGTATGCCTTTCT+TGG | - | chr8_1:84378521-84378540 | Msa1220960:CDS | 45.0% | |
TGAGTACTTTCTTCGAGGTC+TGG | + | chr8_1:84378566-84378585 | None:intergenic | 45.0% | |
TGTCGATCCACTTGCAATAC+GGG | + | chr8_1:84378589-84378608 | None:intergenic | 45.0% | |
CTATTCCTCTGATGGTTTCC+AGG | - | chr8_1:84378610-84378629 | Msa1220960:intron | 45.0% | |
ACAAACCTGGAAACCATCAG+AGG | + | chr8_1:84378618-84378637 | None:intergenic | 45.0% | |
GCCATACCATATAGCCTTTG+TGG | - | chr8_1:84378653-84378672 | Msa1220960:intron | 45.0% | |
GCTATAGTTGGCTGAAAGAG+TGG | + | chr8_1:84378903-84378922 | None:intergenic | 45.0% | |
TCACGAGACGATCTTCTTCA+GGG | + | chr8_1:84378947-84378966 | None:intergenic | 45.0% | |
ATCACGAGACGATCTTCTTC+AGG | + | chr8_1:84378948-84378967 | None:intergenic | 45.0% | |
! | TCAGGCTGATTGTCGGATTT+TGG | + | chr8_1:84379047-84379066 | None:intergenic | 45.0% |
GAATGTTGTCTTCTGACCTC+AGG | - | chr8_1:84379081-84379100 | Msa1220960:intron | 45.0% | |
TTCTGACCTCAGGAACACAT+GGG | - | chr8_1:84379091-84379110 | Msa1220960:intron | 45.0% | |
! | TGACCTTGTGTGATTTGCAG+TGG | - | chr8_1:84379268-84379287 | Msa1220960:intron | 45.0% |
TGTTGAGTCAGGGGTTCTTA+AGG | - | chr8_1:84379367-84379386 | Msa1220960:intron | 45.0% | |
GTTGAGTCAGGGGTTCTTAA+GGG | - | chr8_1:84379368-84379387 | Msa1220960:intron | 45.0% | |
ATAGAAGATGTAAAGCGCGC+TGG | - | chr8_1:84379398-84379417 | Msa1220960:intron | 45.0% | |
!! | TGGAGAGCGTTTGATTCTTC+AGG | - | chr8_1:84379418-84379437 | Msa1220960:intron | 45.0% |
GAGCGTTTGATTCTTCAGGA+TGG | - | chr8_1:84379422-84379441 | Msa1220960:intron | 45.0% | |
GTTCTTTCATACTGCTGGTG+TGG | - | chr8_1:84379503-84379522 | Msa1220960:intron | 45.0% | |
ATTGTGTCCATTTCGCACTC+TGG | - | chr8_1:84379673-84379692 | Msa1220960:intron | 45.0% | |
TTGTGTCCATTTCGCACTCT+GGG | - | chr8_1:84379674-84379693 | Msa1220960:intron | 45.0% | |
CACGAATGAAGAACTCATGG+TGG | + | chr8_1:84379982-84380001 | None:intergenic | 45.0% | |
CGGTGACATTGTTAAGAAGG+TGG | - | chr8_1:84380222-84380241 | Msa1220960:intron | 45.0% | |
AAAGCCTGGACCTTGTCAAT+GGG | + | chr8_1:84380253-84380272 | None:intergenic | 45.0% | |
AAAAGCCTGGACCTTGTCAA+TGG | + | chr8_1:84380254-84380273 | None:intergenic | 45.0% | |
TGTTTACATTGGAGACTCGG+TGG | - | chr8_1:84380318-84380337 | Msa1220960:intron | 45.0% | |
! | GTTTACATTGGAGACTCGGT+GGG | - | chr8_1:84380319-84380338 | Msa1220960:intron | 45.0% |
AGTTCAAGCCTTAGGACCAT+AGG | - | chr8_1:84380391-84380410 | Msa1220960:intron | 45.0% | |
GTTCAAGCCTTAGGACCATA+GGG | - | chr8_1:84380392-84380411 | Msa1220960:intron | 45.0% | |
ATTGTGTCCCTATGGTCCTA+AGG | + | chr8_1:84380402-84380421 | None:intergenic | 45.0% | |
AGGACCATAGGGACACAATT+TGG | - | chr8_1:84380403-84380422 | Msa1220960:intron | 45.0% | |
!!! | TGTCCCATTGTTTTCTGGCT+TGG | - | chr8_1:84380435-84380454 | Msa1220960:intron | 45.0% |
GCCAGATAAACCCTTCCAAT+TGG | + | chr8_1:84380497-84380516 | None:intergenic | 45.0% | |
! | TAGTGGTTCTTCGAAGCATC+TGG | - | chr8_1:84380758-84380777 | Msa1220960:CDS | 45.0% |
ACATACGTAAGTCACTCAGC+CGG | + | chr8_1:84381104-84381123 | None:intergenic | 45.0% | |
TCATCCACTCGATGCGCATA+CGG | - | chr8_1:84375909-84375928 | Msa1220960:three_prime_UTR | 50.0% | |
TACCGGTACCCGTATTGTAC+CGG | - | chr8_1:84376855-84376874 | Msa1220960:intron | 50.0% | |
ATAGGTACGGGTACAGTACC+CGG | + | chr8_1:84376877-84376896 | None:intergenic | 50.0% | |
! | CGGCCACAACAAAAGGGTAT+AGG | + | chr8_1:84377143-84377162 | None:intergenic | 50.0% |
ATTCCGCTACGCAACACCTA+TGG | + | chr8_1:84377232-84377251 | None:intergenic | 50.0% | |
AGCTTGGACTCTCTCAGTTG+AGG | - | chr8_1:84377689-84377708 | Msa1220960:intron | 50.0% | |
GCTGAAGATGCATGACTCAC+TGG | - | chr8_1:84377729-84377748 | Msa1220960:intron | 50.0% | |
CCGGTAACATGGGCCTTAAT+TGG | - | chr8_1:84377771-84377790 | Msa1220960:CDS | 50.0% | |
TGGTTGGAGTATGACCCTGA+GGG | - | chr8_1:84378043-84378062 | Msa1220960:CDS | 50.0% | |
ATCGGAAAGGATGTCCCTCA+GGG | + | chr8_1:84378060-84378079 | None:intergenic | 50.0% | |
TGAGGGACATCCTTTCCGAT+GGG | - | chr8_1:84378060-84378079 | Msa1220960:CDS | 50.0% | |
GTTCTTGTTCCCCATCGGAA+AGG | + | chr8_1:84378073-84378092 | None:intergenic | 50.0% | |
AAGGCATACAGCCTCATGCA+AGG | + | chr8_1:84378518-84378537 | None:intergenic | 50.0% | |
ACGGGTGAGTACTTTCTTCG+AGG | + | chr8_1:84378571-84378590 | None:intergenic | 50.0% | |
GTACTCACCCGTATTGCAAG+TGG | - | chr8_1:84378579-84378598 | Msa1220960:intron | 50.0% | |
CTTCTGACCTCAGGAACACA+TGG | - | chr8_1:84379090-84379109 | Msa1220960:intron | 50.0% | |
TCTGACCTCAGGAACACATG+GGG | - | chr8_1:84379092-84379111 | Msa1220960:intron | 50.0% | |
GACAGGAGTCATCCTAGTCT+TGG | - | chr8_1:84379698-84379717 | Msa1220960:intron | 50.0% | |
!! | AGGAGTCATCCTAGTCTTGG+TGG | - | chr8_1:84379701-84379720 | Msa1220960:intron | 50.0% |
!! | GGAGTCATCCTAGTCTTGGT+GGG | - | chr8_1:84379702-84379721 | Msa1220960:intron | 50.0% |
TGGCCAACCCAAGATATGCT+AGG | + | chr8_1:84380052-84380071 | None:intergenic | 50.0% | |
CATGCGCCCAAATTCATGCT+AGG | - | chr8_1:84380589-84380608 | Msa1220960:intron | 50.0% | |
CTCATTCCTGGCATGATTGG+AGG | + | chr8_1:84380813-84380832 | None:intergenic | 50.0% | |
GGTGCAACTGCTTCGCTTGT+GGG | + | chr8_1:84375799-84375818 | None:intergenic | 55.0% | |
TGGTGCAACTGCTTCGCTTG+TGG | + | chr8_1:84375800-84375819 | None:intergenic | 55.0% | |
CGAGTGGATGAAACACACGG+CGG | + | chr8_1:84375900-84375919 | None:intergenic | 55.0% | |
! | CTGGACTTGCGAAGCGTTTC+TGG | - | chr8_1:84376068-84376087 | Msa1220960:three_prime_UTR | 55.0% |
ACCGGTACCCGTATTGTACC+GGG | - | chr8_1:84376856-84376875 | Msa1220960:intron | 55.0% | |
ACCCGGTACAATACGGGTAC+CGG | + | chr8_1:84376860-84376879 | None:intergenic | 55.0% | |
GGAGATGGGTAGGTCTTGCA+CGG | + | chr8_1:84377519-84377538 | None:intergenic | 55.0% | |
GTAGTGCAAGGGAGATGGGT+AGG | + | chr8_1:84377529-84377548 | None:intergenic | 55.0% | |
ACATGGGCCTTAATTGGGGC+AGG | - | chr8_1:84377777-84377796 | Msa1220960:CDS | 55.0% | |
GTGGTTGGAGTATGACCCTG+AGG | - | chr8_1:84378042-84378061 | Msa1220960:CDS | 55.0% | |
CATCGGAAAGGATGTCCCTC+AGG | + | chr8_1:84378061-84378080 | None:intergenic | 55.0% | |
CTGAGGGACATCCTTTCCGA+TGG | - | chr8_1:84378059-84378078 | Msa1220960:CDS | 55.0% | |
GAGGGACATCCTTTCCGATG+GGG | - | chr8_1:84378061-84378080 | Msa1220960:CDS | 55.0% | |
GTGCCATGACTCCTTGCATG+AGG | - | chr8_1:84378504-84378523 | Msa1220960:CDS | 55.0% | |
CAGCCTCATGCAAGGAGTCA+TGG | + | chr8_1:84378510-84378529 | None:intergenic | 55.0% | |
GAGAACCCCATGTGTTCCTG+AGG | + | chr8_1:84379100-84379119 | None:intergenic | 55.0% | |
GCTGGTGTGGTGACCTCATT+AGG | - | chr8_1:84379516-84379535 | Msa1220960:intron | 55.0% | |
CTGTCTCCCAGAGTGCGAAA+TGG | + | chr8_1:84379683-84379702 | None:intergenic | 55.0% | |
! | CATTTCGCACTCTGGGAGAC+AGG | - | chr8_1:84379681-84379700 | Msa1220960:intron | 55.0% |
GGTGGAGTCTCCCATTGACA+AGG | - | chr8_1:84380240-84380259 | Msa1220960:intron | 55.0% | |
GTCTCCCATTGACAAGGTCC+AGG | - | chr8_1:84380246-84380265 | Msa1220960:intron | 55.0% | |
GAGAGACAGCAGGCAATCTG+TGG | + | chr8_1:84380683-84380702 | None:intergenic | 55.0% | |
CTGTCTCCTCCAATCATGCC+AGG | - | chr8_1:84380804-84380823 | Msa1220960:CDS | 55.0% | |
GAAGCAGTTGCACCAGCAGC+AGG | - | chr8_1:84375805-84375824 | Msa1220960:three_prime_UTR | 60.0% | |
TCCACTCGATGCGCATACGG+TGG | - | chr8_1:84375912-84375931 | Msa1220960:three_prime_UTR | 60.0% | |
ACCACCGTATGCGCATCGAG+TGG | + | chr8_1:84375916-84375935 | None:intergenic | 60.0% | |
! | GCGCCATAGGTGTTGCGTAG+CGG | - | chr8_1:84377226-84377245 | Msa1220960:intron | 60.0% |
GCAGTTGCACCAGCAGCAGG+AGG | - | chr8_1:84375808-84375827 | Msa1220960:three_prime_UTR | 65.0% | |
AGACGAGTGCCTCCTGCTGC+TGG | + | chr8_1:84375820-84375839 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 84375792 | 84381135 | 84375792 | ID=Msa1220960;Name=Msa1220960 |
chr8_1 | mRNA | 84375792 | 84381135 | 84375792 | ID=Msa1220960-mRNA-1;Parent=Msa1220960;Name=Msa1220960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=128|1|1|1|1|1|6|562|599 |
chr8_1 | exon | 84375792 | 84376766 | 84375792 | ID=Msa1220960-mRNA-1:exon:30268;Parent=Msa1220960-mRNA-1 |
chr8_1 | exon | 84377373 | 84377639 | 84377373 | ID=Msa1220960-mRNA-1:exon:30267;Parent=Msa1220960-mRNA-1 |
chr8_1 | exon | 84377745 | 84378156 | 84377745 | ID=Msa1220960-mRNA-1:exon:30266;Parent=Msa1220960-mRNA-1 |
chr8_1 | exon | 84378296 | 84378586 | 84378296 | ID=Msa1220960-mRNA-1:exon:30265;Parent=Msa1220960-mRNA-1 |
chr8_1 | exon | 84379171 | 84379279 | 84379171 | ID=Msa1220960-mRNA-1:exon:30264;Parent=Msa1220960-mRNA-1 |
chr8_1 | exon | 84380700 | 84381135 | 84380700 | ID=Msa1220960-mRNA-1:exon:30263;Parent=Msa1220960-mRNA-1 |
chr8_1 | five_prime_UTR | 84381008 | 84381135 | 84381008 | ID=Msa1220960-mRNA-1:five_prime_utr;Parent=Msa1220960-mRNA-1 |
chr8_1 | CDS | 84380700 | 84381007 | 84380700 | ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1 |
chr8_1 | CDS | 84379171 | 84379279 | 84379171 | ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1 |
chr8_1 | CDS | 84378296 | 84378586 | 84378296 | ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1 |
chr8_1 | CDS | 84377745 | 84378156 | 84377745 | ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1 |
chr8_1 | CDS | 84377373 | 84377639 | 84377373 | ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1 |
chr8_1 | CDS | 84376354 | 84376766 | 84376354 | ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1 |
chr8_1 | three_prime_UTR | 84375792 | 84376353 | 84375792 | ID=Msa1220960-mRNA-1:three_prime_utr;Parent=Msa1220960-mRNA-1 |
Gene Sequence |
Protein sequence |