AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1220960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220960 MtrunA17_Chr1g0190441 97.841 602 10 1 1 599 1 602 0.0 1213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220960 AT5G32470.1 66.556 601 178 7 10 598 26 615 0.0 760

Find 153 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGACTTGCGAAGCGTTTC+TGG 0.062503 8_1:-84380837 Msa1220960:CDS
GTCTCTCTTATTTCTCTTTC+AGG 0.089732 8_1:-84376209 Msa1220960:three_prime_UTR
TTTCTGTTGGCTACTGCTTC+TGG 0.123278 8_1:-84378501 Msa1220960:CDS
TCAGGCTGATTGTCGGATTT+TGG 0.180316 8_1:+84377861 None:intergenic
GAGAATCATCATACATTTAT+TGG 0.192665 8_1:+84377731 None:intergenic
GCAGCTTCATTATAGATTAA+TGG 0.193575 8_1:-84375892 Msa1220960:three_prime_UTR
TAAAGTATAAGCAGCAATTT+TGG 0.205603 8_1:+84378425 None:intergenic
CTGCTGAATCCTTAAAATTA+TGG 0.221221 8_1:+84375978 None:intergenic
AAAATTGCTGCTTATACTTT+AGG 0.226024 8_1:-84378423 Msa1220960:CDS
TCGAGAACTCAGCAAATAAT+AGG 0.227356 8_1:-84377563 Msa1220960:CDS
TTATCAATTCCAGTAGATTA+TGG 0.241020 8_1:-84375855 Msa1220960:three_prime_UTR
CCATTTGGATTCGGTTTCTA+TGG 0.261612 8_1:+84380884 None:intergenic
CTATTCCTCTGATGGTTTCC+AGG 0.273448 8_1:-84378295 Msa1220960:intron
TCCAATTGGAAGGGTTTATC+TGG 0.273912 8_1:-84376412 Msa1220960:CDS
TGTCTGAAATTTCTCATTCC+TGG 0.275265 8_1:+84376083 None:intergenic
TGGAGAGCGTTTGATTCTTC+AGG 0.303161 8_1:-84377487 Msa1220960:CDS
ATTAGGTCTGCTTTCTCTTC+AGG 0.304553 8_1:-84377372 Msa1220960:intron
TGTTGAGTCAGGGGTTCTTA+AGG 0.313829 8_1:-84377538 Msa1220960:CDS
ATGAGGCTGTATGCCTTTCT+TGG 0.316675 8_1:-84378384 Msa1220960:CDS
ATCACGAGACGATCTTCTTC+AGG 0.318505 8_1:+84377960 None:intergenic
GGTGCAACTGCTTCGCTTGT+GGG 0.329214 8_1:+84381109 None:intergenic
TATCAATTCCAGTAGATTAT+GGG 0.336583 8_1:-84375854 Msa1220960:three_prime_UTR
AAACTAAGTGTCTCTTTAAC+TGG 0.341757 8_1:-84378101 Msa1220960:CDS
AGGACCATAGGGACACAATT+TGG 0.349524 8_1:-84376502 Msa1220960:CDS
AATAATAGGGTTGTTGAGTC+AGG 0.361953 8_1:-84377549 Msa1220960:CDS
ATTCGAGCTATTTGATCTTC+AGG 0.363900 8_1:+84377843 None:intergenic
GCTGGTGTGGTGACCTCATT+AGG 0.364039 8_1:-84377389 Msa1220960:CDS
TTCTTTACACAGTCTCTAGT+TGG 0.371085 8_1:-84376387 Msa1220960:CDS
TTTCTCATTCCTGGCATGAT+TGG 0.373067 8_1:+84376092 None:intergenic
TGAGTTAATACTGTGCTCTT+TGG 0.378416 8_1:+84378545 None:intergenic
GTTGAGTCAGGGGTTCTTAA+GGG 0.382971 8_1:-84377537 Msa1220960:CDS
ATTGAAGGACTGAAAAGTTC+TGG 0.386533 8_1:-84378474 Msa1220960:CDS
TGTTGATTCATCTGCCATCT+TGG 0.390739 8_1:-84377907 Msa1220960:CDS
TTCTGTTGGCTACTGCTTCT+GGG 0.391154 8_1:-84378500 Msa1220960:CDS
TTTGTTATCTCTTTAGCTTC+CGG 0.395712 8_1:-84380772 Msa1220960:CDS
TTTCAAATGCTTGTTAGATC+AGG 0.397897 8_1:-84376054 Msa1220960:three_prime_UTR
GATTGTGAATTGCTGCCATT+TGG 0.400081 8_1:+84380869 None:intergenic
TAGTGGTTCTTCGAAGCATC+TGG 0.405757 8_1:-84376147 Msa1220960:three_prime_UTR
TGAGTACTTTCTTCGAGGTC+TGG 0.410220 8_1:+84378342 None:intergenic
CATTGAAAAGCTTTATTACC+AGG 0.413331 8_1:-84378063 Msa1220960:CDS
ATACTCCTCTGTATACTGTT+TGG 0.415844 8_1:+84377782 None:intergenic
GAGATTGAAGAACGGATGAT+TGG 0.415990 8_1:+84380943 None:intergenic
CTCATTCCTGGCATGATTGG+AGG 0.418484 8_1:+84376095 None:intergenic
TGCATGTTCTTTCATACTGC+TGG 0.421221 8_1:-84377407 Msa1220960:CDS
TTGGTTCAAGTTCAAGCCTT+AGG 0.425761 8_1:-84376522 Msa1220960:CDS
GCCAGATAAACCCTTCCAAT+TGG 0.432865 8_1:+84376411 None:intergenic
AGTGCATGTTAAATCAAAAT+CGG 0.433883 8_1:+84377932 None:intergenic
ATTTATGCATATGAATTTCA+AGG 0.434571 8_1:+84375927 None:intergenic
CTATTTCAAGCTTCATTGCC+TGG 0.435585 8_1:+84378045 None:intergenic
CCAATATATTACGAAAAGCC+TGG 0.439834 8_1:+84376641 None:intergenic
ACGAAGAAAGCTCTTCCAAT+TGG 0.441203 8_1:-84376426 Msa1220960:CDS
TCTTTACACAGTCTCTAGTT+GGG 0.443386 8_1:-84376386 Msa1220960:CDS
GTGTTGTACTGGTATTTAGT+AGG 0.445056 8_1:-84376012 Msa1220960:three_prime_UTR
GAAGCAGTTGCACCAGCAGC+AGG 0.449856 8_1:-84381100 Msa1220960:five_prime_UTR
AGACGAGTGCCTCCTGCTGC+TGG 0.453587 8_1:+84381088 None:intergenic
CAGACTTTGAAGTGTTGTAC+TGG 0.455330 8_1:-84376023 Msa1220960:three_prime_UTR
CGAGAACTCAGCAAATAATA+GGG 0.455612 8_1:-84377562 Msa1220960:CDS
ATCATCATACATTTATTGGC+AGG 0.455724 8_1:+84377735 None:intergenic
TGGTGCAACTGCTTCGCTTG+TGG 0.456055 8_1:+84381108 None:intergenic
TTAGTCAAGGGTGCTATAGT+TGG 0.459081 8_1:+84377993 None:intergenic
TAGTTTGTCGAGCAATTCTT+CGG 0.468928 8_1:+84378118 None:intergenic
GAATTGCTGCCATTTGGATT+CGG 0.469510 8_1:+84380875 None:intergenic
TACCGGTGACATTGTTAAGA+AGG 0.475372 8_1:-84376686 Msa1220960:CDS
GCCAGCTGATTTAATTGAGA+TGG 0.477959 8_1:-84376749 Msa1220960:intron
TTGATCTTCAGGCTGATTGT+CGG 0.478317 8_1:+84377854 None:intergenic
AGGGTTATGTCCTTTAGTCA+AGG 0.480433 8_1:+84377980 None:intergenic
TGCCATTCTGATTTCTCTAG+TGG 0.480978 8_1:-84376164 Msa1220960:three_prime_UTR
AGAATCGATCTTCAAGTTAC+CGG 0.480978 8_1:+84380753 None:intergenic
TGTCTACTTGAAGCAGATGT+AGG 0.483362 8_1:-84376553 Msa1220960:CDS
TGTCGATCCACTTGCAATAC+GGG 0.484420 8_1:+84378319 None:intergenic
GATGCATGACTCACTGGTAA+AGG 0.484632 8_1:-84379170 Msa1220960:intron
ATTCACAATCACAGTGAAGC+TGG 0.488032 8_1:-84380856 Msa1220960:CDS
TTGTCGATCCACTTGCAATA+CGG 0.489328 8_1:+84378318 None:intergenic
AAAAGCCTGGACCTTGTCAA+TGG 0.490746 8_1:+84376654 None:intergenic
GGGTTATGTCCTTTAGTCAA+GGG 0.495478 8_1:+84377981 None:intergenic
AGAAAGCTCTTCCAATTGGA+AGG 0.496687 8_1:-84376422 Msa1220960:CDS
AGGAGTGTACATAGAGAAGA+TGG 0.501365 8_1:+84380795 None:intergenic
TTGAAGAACGGATGATTGGA+AGG 0.503290 8_1:+84380947 None:intergenic
GAACATCTTGAGCGATGTAA+TGG 0.505674 8_1:+84380725 None:intergenic
GAAGCTAAAGAGATAACAAA+AGG 0.510492 8_1:+84380775 None:intergenic
TAAGTATACAGACTTTCTGT+TGG 0.511176 8_1:-84378514 Msa1220960:CDS
TATAGCAATTTCTGCCAAGA+TGG 0.512042 8_1:+84377893 None:intergenic
ACTGCTTCTGGGAAGATTGA+AGG 0.512264 8_1:-84378489 Msa1220960:CDS
CTGTCTCCTCCAATCATGCC+AGG 0.512366 8_1:-84376101 Msa1220960:three_prime_UTR
AAAGCCTGGACCTTGTCAAT+GGG 0.515036 8_1:+84376655 None:intergenic
CTTCTGACCTCAGGAACACA+TGG 0.515072 8_1:-84377815 Msa1220960:CDS
TCACGAGACGATCTTCTTCA+GGG 0.515838 8_1:+84377961 None:intergenic
GCTGAAGATGCATGACTCAC+TGG 0.516947 8_1:-84379176 Msa1220960:CDS
TAACCAAGCCAGAAAACAAT+GGG 0.517719 8_1:+84376467 None:intergenic
AGTTCAAGCCTTAGGACCAT+AGG 0.519707 8_1:-84376514 Msa1220960:CDS
ACGGGTGAGTACTTTCTTCG+AGG 0.521166 8_1:+84378337 None:intergenic
CCATAGAAACCGAATCCAAA+TGG 0.521368 8_1:-84380884 Msa1220960:CDS
AACTGTTTACATTGGAGACT+CGG 0.521999 8_1:-84376590 Msa1220960:CDS
GTCTCCCATTGACAAGGTCC+AGG 0.526292 8_1:-84376659 Msa1220960:CDS
ACTATAGCACCCTTGACTAA+AGG 0.527516 8_1:-84377990 Msa1220960:CDS
AACACCAAATTGTGTCCCTA+TGG 0.528253 8_1:+84376498 None:intergenic
TGCAATACAAATACACAAGC+AGG 0.530340 8_1:-84376267 Msa1220960:three_prime_UTR
ATTGTGTCCCTATGGTCCTA+AGG 0.541144 8_1:+84376506 None:intergenic
ATCGACAACTATTCCTCTGA+TGG 0.541822 8_1:-84378303 Msa1220960:CDS
TCATCCACTCGATGCGCATA+CGG 0.543245 8_1:-84380996 Msa1220960:exon
AAGAGAAAGCAGACCTAATG+AGG 0.544117 8_1:+84377376 None:intergenic
GAATGTTGTCTTCTGACCTC+AGG 0.547502 8_1:-84377824 Msa1220960:CDS
CAGCCTCATGCAAGGAGTCA+TGG 0.552331 8_1:+84378398 None:intergenic
GTTAATGGTGTATAGGAATG+GGG 0.555143 8_1:-84378579 Msa1220960:intron
TGGAACGATCTTGAATTGAA+AGG 0.556469 8_1:+84380904 None:intergenic
ATAATAGGGTTGTTGAGTCA+GGG 0.558224 8_1:-84377548 Msa1220960:CDS
TGAAGAACGGATGATTGGAA+GGG 0.558401 8_1:+84380948 None:intergenic
GCAGATGTAGGAATTGTGAT+TGG 0.562607 8_1:-84376541 Msa1220960:CDS
GTTCTTTCATACTGCTGGTG+TGG 0.562655 8_1:-84377402 Msa1220960:CDS
TAATACTGTGCTCTTTGGCA+AGG 0.563964 8_1:+84378550 None:intergenic
CATGCGCCCAAATTCATGCT+AGG 0.564247 8_1:-84376316 Msa1220960:three_prime_UTR
GAAAGCTCTTCCAATTGGAA+GGG 0.564829 8_1:-84376421 Msa1220960:CDS
GAGCGTTTGATTCTTCAGGA+TGG 0.565677 8_1:-84377483 Msa1220960:CDS
ACATAGAGAAGATGGATTCA+CGG 0.572125 8_1:+84380803 None:intergenic
ATAGAAGATGTAAAGCGCGC+TGG 0.574979 8_1:-84377507 Msa1220960:CDS
TGGTGTATAGGAATGGGGAT+TGG 0.575334 8_1:-84378574 Msa1220960:intron
GATGACGATGACGATAAGCT+TGG 0.577286 8_1:-84379232 Msa1220960:CDS
ATGATTTCATAGGTATGAGT+CGG 0.580799 8_1:-84379269 Msa1220960:intron
GTTCAAGCCTTAGGACCATA+GGG 0.581445 8_1:-84376513 Msa1220960:CDS
AGAGAAATAAGAGAGACAGC+AGG 0.584475 8_1:+84376215 None:intergenic
AGATATGTGAAGTTTCAGAC+CGG 0.589399 8_1:-84375823 Msa1220960:three_prime_UTR
TTCTGACCTCAGGAACACAT+GGG 0.589740 8_1:-84377814 Msa1220960:CDS
TATGACGGATCTGTTTCTAC+CGG 0.591731 8_1:-84376703 Msa1220960:CDS
AGCTTGGACTCTCTCAGTTG+AGG 0.591841 8_1:-84379216 Msa1220960:CDS
CACCTTCTTAACAATGTCAC+CGG 0.597188 8_1:+84376684 None:intergenic
GTACTCACCCGTATTGCAAG+TGG 0.597239 8_1:-84378326 Msa1220960:CDS
TTCGAAATGAGATTGAAGAA+CGG 0.598266 8_1:+84380935 None:intergenic
GCTATAGTTGGCTGAAAGAG+TGG 0.601212 8_1:+84378005 None:intergenic
GCAGTTGCACCAGCAGCAGG+AGG 0.604817 8_1:-84381097 Msa1220960:five_prime_UTR
TAATAGGGTTGTTGAGTCAG+GGG 0.605903 8_1:-84377547 Msa1220960:CDS
TTAACCAAGCCAGAAAACAA+TGG 0.607882 8_1:+84376466 None:intergenic
GAGAGACAGCAGGCAATCTG+TGG 0.609553 8_1:+84376225 None:intergenic
CGGTGACATTGTTAAGAAGG+TGG 0.609806 8_1:-84376683 Msa1220960:CDS
GTTTACATTGGAGACTCGGT+GGG 0.614786 8_1:-84376586 Msa1220960:CDS
GTGCCATGACTCCTTGCATG+AGG 0.617970 8_1:-84378401 Msa1220960:CDS
GCTAACGAGTTCAGTTATGA+CGG 0.620110 8_1:-84376718 Msa1220960:CDS
CATCTTGAGCGATGTAATGG+CGG 0.622829 8_1:+84380728 None:intergenic
AAGGCATACAGCCTCATGCA+AGG 0.640683 8_1:+84378390 None:intergenic
ACCACCGTATGCGCATCGAG+TGG 0.641894 8_1:+84380992 None:intergenic
TCCACTCGATGCGCATACGG+TGG 0.643704 8_1:-84380993 Msa1220960:exon
GAGAACCCCATGTGTTCCTG+AGG 0.647944 8_1:+84377808 None:intergenic
TGTTTACATTGGAGACTCGG+TGG 0.650130 8_1:-84376587 Msa1220960:CDS
AACCACTAGAGAAATCAGAA+TGG 0.651741 8_1:+84376162 None:intergenic
GGTGGAGTCTCCCATTGACA+AGG 0.664349 8_1:-84376665 Msa1220960:CDS
CATCGAGTGGATGAAACACA+CGG 0.665790 8_1:+84381005 None:intergenic
ACAAACCTGGAAACCATCAG+AGG 0.677140 8_1:+84378290 None:intergenic
ACATACGTAAGTCACTCAGC+CGG 0.678963 8_1:+84375804 None:intergenic
GATGTTGCAATTCAGAGACA+TGG 0.679874 8_1:-84376187 Msa1220960:three_prime_UTR
GTATGAAAGAACATGCACAT+TGG 0.680060 8_1:+84377413 None:intergenic
TCTGACCTCAGGAACACATG+GGG 0.685059 8_1:-84377813 Msa1220960:CDS
TCTATCCAAACAGTATACAG+AGG 0.708451 8_1:-84377787 Msa1220960:CDS
AATACAAATACACAAGCAGG+TGG 0.724838 8_1:-84376264 Msa1220960:three_prime_UTR
CGAGTGGATGAAACACACGG+CGG 0.899207 8_1:+84381008 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACTATATTTTCATAAAAA+TGG + chr8_1:84376653-84376672 None:intergenic 10.0%
!!! TTTTTAAAATATTACAGTAT+GGG + chr8_1:84376821-84376840 None:intergenic 10.0%
!!! ATTTTTAAAATATTACAGTA+TGG + chr8_1:84376822-84376841 None:intergenic 10.0%
!! AATTAATCACTAATAAATTT+AGG - chr8_1:84376995-84377014 Msa1220960:intron 10.0%
!!! TTGTTTGAAAATATTTTAAA+AGG + chr8_1:84377195-84377214 None:intergenic 10.0%
!!! TTTAAAATATTTTCAAACAA+TGG - chr8_1:84377195-84377214 Msa1220960:intron 10.0%
!! TTATTCTTATATTTGAATTT+AGG - chr8_1:84378749-84378768 Msa1220960:intron 10.0%
!! AAATAAATTTATAAGACAAT+AGG + chr8_1:84380124-84380143 None:intergenic 10.0%
!!! AAATTTATTTTCCTAATTTT+TGG - chr8_1:84380134-84380153 Msa1220960:intron 10.0%
!!! TTTTAAAATATTACAGTATG+GGG + chr8_1:84376820-84376839 None:intergenic 15.0%
!! TTATTGAAAGAATTACATTA+TGG + chr8_1:84376954-84376973 None:intergenic 15.0%
!! AATAAATTTATTGTCTCATT+TGG + chr8_1:84377057-84377076 None:intergenic 15.0%
!!! AAGTTTTTCAAAAATTGAAA+AGG + chr8_1:84377990-84378009 None:intergenic 15.0%
!! CAAAAATTTCATATAACTAT+TGG + chr8_1:84379913-84379932 None:intergenic 15.0%
!! AAAAAATTAACTGTTTACAT+TGG - chr8_1:84380307-84380326 Msa1220960:intron 15.0%
!! AAGAAACTATTGAAAGTTTA+TGG - chr8_1:84377574-84377593 Msa1220960:CDS 20.0%
!! AAAGTTTATGGTAAGTAATT+TGG - chr8_1:84377586-84377605 Msa1220960:CDS 20.0%
!! TTGAATTTCTATGATTTCAT+AGG - chr8_1:84377626-84377645 Msa1220960:intron 20.0%
!!! TCGTGTTATAAAGTATTTAA+GGG - chr8_1:84377851-84377870 Msa1220960:CDS 20.0%
!!! ATAATTTTCAACTTGTGAAT+GGG - chr8_1:84377890-84377909 Msa1220960:CDS 20.0%
!! CTTATAATTTATTTATCGAG+AGG - chr8_1:84378092-84378111 Msa1220960:CDS 20.0%
!! AAACGAAAAAAACAACAAAT+GGG + chr8_1:84378139-84378158 None:intergenic 20.0%
!! TAAACGAAAAAAACAACAAA+TGG + chr8_1:84378140-84378159 None:intergenic 20.0%
!! TATCAACTTAAACATAAACA+TGG + chr8_1:84378174-84378193 None:intergenic 20.0%
!!! TTATTGTGGTTTTATGTTAA+TGG - chr8_1:84378311-84378330 Msa1220960:CDS 20.0%
!! ATTAAATGTATATTTGACCA+AGG + chr8_1:84378700-84378719 None:intergenic 20.0%
!! GTCAAATATACATTTAATCA+TGG - chr8_1:84378702-84378721 Msa1220960:intron 20.0%
!! AAGGATAAAAAAACTCAATA+TGG + chr8_1:84379850-84379869 None:intergenic 20.0%
!!! TTTTTATCCTTCAATTTGTT+AGG - chr8_1:84379859-84379878 Msa1220960:intron 20.0%
!!! TTTTATCCTTCAATTTGTTA+GGG - chr8_1:84379860-84379879 Msa1220960:intron 20.0%
!! ATTTATGCATATGAATTTCA+AGG + chr8_1:84380981-84381000 None:intergenic 20.0%
! CATTATATGCTATGTTACAT+AGG + chr8_1:84376895-84376914 None:intergenic 25.0%
!! TTTTGTTCACTGTCTTAAAA+CGG - chr8_1:84377097-84377116 Msa1220960:intron 25.0%
!! TTTTCAAACAATGGATATAG+TGG - chr8_1:84377204-84377223 Msa1220960:intron 25.0%
! TGACAACACTAATTAGAATA+TGG - chr8_1:84377256-84377275 Msa1220960:intron 25.0%
! AACTGTATGTACATTTATTG+AGG - chr8_1:84377465-84377484 Msa1220960:CDS 25.0%
!!! TTTCTGTCCTTTTTTAAGAA+AGG - chr8_1:84377551-84377570 Msa1220960:CDS 25.0%
! GTTTCTTCCTTTCTTAAAAA+AGG + chr8_1:84377561-84377580 None:intergenic 25.0%
!! CTCGTGTTATAAAGTATTTA+AGG - chr8_1:84377850-84377869 Msa1220960:CDS 25.0%
!! CGTGTTATAAAGTATTTAAG+GGG - chr8_1:84377852-84377871 Msa1220960:CDS 25.0%
!! CATAATTTTCAACTTGTGAA+TGG - chr8_1:84377889-84377908 Msa1220960:CDS 25.0%
! TATGCAACCATTAAGTATTT+GGG + chr8_1:84377922-84377941 None:intergenic 25.0%
!!! CATAATAGTGAAGTTTTATG+TGG - chr8_1:84378023-84378042 Msa1220960:CDS 25.0%
! TTATTTATCGAGAGGAAAAT+TGG - chr8_1:84378100-84378119 Msa1220960:CDS 25.0%
! TATTTATCGAGAGGAAAATT+GGG - chr8_1:84378101-84378120 Msa1220960:CDS 25.0%
! ACATAAAACCACAATAACAT+AGG + chr8_1:84378308-84378327 None:intergenic 25.0%
!! GTTTTATGTTAATGGTGTAT+AGG - chr8_1:84378319-84378338 Msa1220960:CDS 25.0%
!! TAAAGTATAAGCAGCAATTT+TGG + chr8_1:84378483-84378502 None:intergenic 25.0%
!! AAAATTGCTGCTTATACTTT+AGG - chr8_1:84378482-84378501 Msa1220960:CDS 25.0%
! AGTGCATGTTAAATCAAAAT+CGG + chr8_1:84378976-84378995 None:intergenic 25.0%
! GAGAATCATCATACATTTAT+TGG + chr8_1:84379177-84379196 None:intergenic 25.0%
!!! TCATTTTCAATGTTAGTTTG+CGG - chr8_1:84379618-84379637 Msa1220960:intron 25.0%
! GTGTATAAAATAGCCTATTT+AGG - chr8_1:84379724-84379743 Msa1220960:intron 25.0%
!!! TGTGATGTTTTTTGAAGTTT+TGG - chr8_1:84379796-84379815 Msa1220960:intron 25.0%
!!! ATGTTTTTTGAAGTTTTGGT+TGG - chr8_1:84379800-84379819 Msa1220960:intron 25.0%
! TTATCAATTCCAGTAGATTA+TGG - chr8_1:84381050-84381069 Msa1220960:five_prime_UTR 25.0%
! TATCAATTCCAGTAGATTAT+GGG - chr8_1:84381051-84381070 Msa1220960:five_prime_UTR 25.0%
TTCGAAATGAGATTGAAGAA+CGG + chr8_1:84375973-84375992 None:intergenic 30.0%
GAAGCTAAAGAGATAACAAA+AGG + chr8_1:84376133-84376152 None:intergenic 30.0%
! TTTGTTATCTCTTTAGCTTC+CGG - chr8_1:84376133-84376152 Msa1220960:three_prime_UTR 30.0%
! CATTATCGCTAATCAAGTTT+TGG - chr8_1:84376270-84376289 Msa1220960:three_prime_UTR 30.0%
AAAATGGTGAATTACGCATA+CGG - chr8_1:84376606-84376625 Msa1220960:CDS 30.0%
AAAAAGTCGAAAACTAGAGT+TGG + chr8_1:84376710-84376729 None:intergenic 30.0%
AAATTGTTGTATTCTCGTAC+CGG - chr8_1:84376838-84376857 Msa1220960:intron 30.0%
TATGCTATGTTACATAGGTA+CGG + chr8_1:84376890-84376909 None:intergenic 30.0%
TGTCTTAAAACGGAGAAAAA+CGG - chr8_1:84377107-84377126 Msa1220960:intron 30.0%
TTAGAATATGGTTGTTGTCT+TGG - chr8_1:84377268-84377287 Msa1220960:intron 30.0%
! ATAATCAAACTCTCCAGTTT+TGG + chr8_1:84377438-84377457 None:intergenic 30.0%
AACTGGAGAGTTTGATTATT+TGG - chr8_1:84377439-84377458 Msa1220960:CDS 30.0%
! ACATTTATTGAGGTGAGTTT+TGG - chr8_1:84377475-84377494 Msa1220960:CDS 30.0%
ATGATTTCATAGGTATGAGT+CGG - chr8_1:84377636-84377655 Msa1220960:intron 30.0%
! TAAAGTATTTAAGGGGAAGA+AGG - chr8_1:84377859-84377878 Msa1220960:CDS 30.0%
GTATGCAACCATTAAGTATT+TGG + chr8_1:84377923-84377942 None:intergenic 30.0%
TGGTTGCATACTAATAGTAA+AGG - chr8_1:84377932-84377951 Msa1220960:CDS 30.0%
!! ATAGTGAAGTTTTATGTGGT+TGG - chr8_1:84378027-84378046 Msa1220960:CDS 30.0%
ATGTTAATGGTGTATAGGAA+TGG - chr8_1:84378324-84378343 Msa1220960:CDS 30.0%
TGTTAATGGTGTATAGGAAT+GGG - chr8_1:84378325-84378344 Msa1220960:CDS 30.0%
TAAGTATACAGACTTTCTGT+TGG - chr8_1:84378391-84378410 Msa1220960:CDS 30.0%
!!! GCAATTTTGGTTTTCTCAAA+TGG + chr8_1:84378470-84378489 None:intergenic 30.0%
! CTTGAACTTTTTACCAAGAA+AGG + chr8_1:84378537-84378556 None:intergenic 30.0%
CTTTCTTGGTAAAAAGTTCA+AGG - chr8_1:84378535-84378554 Msa1220960:CDS 30.0%
!! TTTGATACTATTTTGAGCCT+TGG - chr8_1:84378680-84378699 Msa1220960:intron 30.0%
ATAAGAATAACTGAGTAGCT+GGG + chr8_1:84378739-84378758 None:intergenic 30.0%
TATAAGAATAACTGAGTAGC+TGG + chr8_1:84378740-84378759 None:intergenic 30.0%
AAACTAAGTGTCTCTTTAAC+TGG - chr8_1:84378804-84378823 Msa1220960:intron 30.0%
!! CATTGAAAAGCTTTATTACC+AGG - chr8_1:84378842-84378861 Msa1220960:intron 30.0%
ATCATCATACATTTATTGGC+AGG + chr8_1:84379173-84379192 None:intergenic 30.0%
! AAAATAGCCTATTTAGGACT+TGG - chr8_1:84379730-84379749 Msa1220960:intron 30.0%
!!! TTTGAAGTTTTGGTTGGAAT+AGG - chr8_1:84379806-84379825 Msa1220960:intron 30.0%
! TTTTAGCCTAGCATGAATTT+GGG + chr8_1:84380598-84380617 None:intergenic 30.0%
!! TTTTTAGCCTAGCATGAATT+TGG + chr8_1:84380599-84380618 None:intergenic 30.0%
! TTTCAAATGCTTGTTAGATC+AGG - chr8_1:84380851-84380870 Msa1220960:CDS 30.0%
! ACTGCTGTTCCATAATTTTA+AGG - chr8_1:84380918-84380937 Msa1220960:CDS 30.0%
CTGCTGAATCCTTAAAATTA+TGG + chr8_1:84380930-84380949 None:intergenic 30.0%
GAGTCAACTAAAAAATACAC+AGG + chr8_1:84380959-84380978 None:intergenic 30.0%
GCAGCTTCATTATAGATTAA+TGG - chr8_1:84381013-84381032 Msa1220960:five_prime_UTR 30.0%
AAAAAAGTCCCATAATCTAC+TGG + chr8_1:84381062-84381081 None:intergenic 30.0%
!! TGATTGGAAGGGTTTTGATA+GGG + chr8_1:84375949-84375968 None:intergenic 35.0%
!! ATGATTGGAAGGGTTTTGAT+AGG + chr8_1:84375950-84375969 None:intergenic 35.0%
TGGAACGATCTTGAATTGAA+AGG + chr8_1:84376004-84376023 None:intergenic 35.0%
! ACATAGAGAAGATGGATTCA+CGG + chr8_1:84376105-84376124 None:intergenic 35.0%
! AGAATCGATCTTCAAGTTAC+CGG + chr8_1:84376155-84376174 None:intergenic 35.0%
AAATAGCTGTTATAGCGTTG+CGG - chr8_1:84376383-84376402 Msa1220960:CDS 35.0%
CAAAATATCAAAGTGCGTCA+AGG - chr8_1:84376449-84376468 Msa1220960:CDS 35.0%
GAATACTGCGTTACAATTTG+CGG - chr8_1:84376494-84376513 Msa1220960:CDS 35.0%
ATCATATAATCTCCGAAGCA+TGG - chr8_1:84376575-84376594 Msa1220960:CDS 35.0%
TCATATAATCTCCGAAGCAT+GGG - chr8_1:84376576-84376595 Msa1220960:CDS 35.0%
! TTTTACAAGTACCCATGCTT+CGG + chr8_1:84376590-84376609 None:intergenic 35.0%
AAGCATGGGTACTTGTAAAA+TGG - chr8_1:84376590-84376609 Msa1220960:CDS 35.0%
ATGCTATGTTACATAGGTAC+GGG + chr8_1:84376889-84376908 None:intergenic 35.0%
AAAATCACAAGCAACAGGTA+GGG + chr8_1:84377080-84377099 None:intergenic 35.0%
AAAAATCACAAGCAACAGGT+AGG + chr8_1:84377081-84377100 None:intergenic 35.0%
GAACAAAAATCACAAGCAAC+AGG + chr8_1:84377085-84377104 None:intergenic 35.0%
AAAACGGAGAAAAACGGTAT+CGG - chr8_1:84377113-84377132 Msa1220960:intron 35.0%
ACAGTTCGTTACTGCAAAAT+CGG + chr8_1:84377163-84377182 None:intergenic 35.0%
AATATGGTTGTTGTCTTGGA+TGG - chr8_1:84377272-84377291 Msa1220960:intron 35.0%
! GTTTTCTCAGTAACCAAAAC+TGG - chr8_1:84377422-84377441 Msa1220960:CDS 35.0%
!! GTTGAGGAAGAATGTTTTAG+AGG - chr8_1:84377705-84377724 Msa1220960:intron 35.0%
!! TAAAGGTAAGGCATTTTTCC+CGG - chr8_1:84377752-84377771 Msa1220960:CDS 35.0%
AAAAAAACCTGCCCCAATTA+AGG + chr8_1:84377787-84377806 None:intergenic 35.0%
ATTGCCTTCTAAATGCTGAT+TGG - chr8_1:84377961-84377980 Msa1220960:CDS 35.0%
TATAAGTTCTTGTTCCCCAT+CGG + chr8_1:84378078-84378097 None:intergenic 35.0%
ATAGGCTGTATGAGTGAAAA+GGG + chr8_1:84378290-84378309 None:intergenic 35.0%
TCATACAGCCTATGTTATTG+TGG - chr8_1:84378297-84378316 Msa1220960:CDS 35.0%
GTTAATGGTGTATAGGAATG+GGG - chr8_1:84378326-84378345 Msa1220960:CDS 35.0%
TGAGTTAATACTGTGCTCTT+TGG + chr8_1:84378363-84378382 None:intergenic 35.0%
ATTGAAGGACTGAAAAGTTC+TGG - chr8_1:84378431-84378450 Msa1220960:CDS 35.0%
TAGTATCAAAGCAACCACAA+AGG + chr8_1:84378670-84378689 None:intergenic 35.0%
TAAGAATAACTGAGTAGCTG+GGG + chr8_1:84378738-84378757 None:intergenic 35.0%
! TAGTTTGTCGAGCAATTCTT+CGG + chr8_1:84378790-84378809 None:intergenic 35.0%
TATAGCAATTTCTGCCAAGA+TGG + chr8_1:84379015-84379034 None:intergenic 35.0%
ATTCGAGCTATTTGATCTTC+AGG + chr8_1:84379065-84379084 None:intergenic 35.0%
TCTATCCAAACAGTATACAG+AGG - chr8_1:84379118-84379137 Msa1220960:intron 35.0%
ATACTCCTCTGTATACTGTT+TGG + chr8_1:84379126-84379145 None:intergenic 35.0%
TCTCTGCATTCTTTCTACTA+TGG - chr8_1:84379193-84379212 Msa1220960:CDS 35.0%
TCGAGAACTCAGCAAATAAT+AGG - chr8_1:84379342-84379361 Msa1220960:intron 35.0%
CGAGAACTCAGCAAATAATA+GGG - chr8_1:84379343-84379362 Msa1220960:intron 35.0%
AATAATAGGGTTGTTGAGTC+AGG - chr8_1:84379356-84379375 Msa1220960:intron 35.0%
ATAATAGGGTTGTTGAGTCA+GGG - chr8_1:84379357-84379376 Msa1220960:intron 35.0%
GTATGAAAGAACATGCACAT+TGG + chr8_1:84379495-84379514 None:intergenic 35.0%
GAGAACTAAATCACATCTCA+TGG + chr8_1:84379572-84379591 None:intergenic 35.0%
CAACAATCCAAGTCCTAAAT+AGG + chr8_1:84379740-84379759 None:intergenic 35.0%
! CTATTTAGGACTTGGATTGT+TGG - chr8_1:84379738-84379757 Msa1220960:intron 35.0%
!! TCCTTCAATTTGTTAGGGAT+AGG - chr8_1:84379865-84379884 Msa1220960:intron 35.0%
TTAGTGTGATGCAAAGCAAT+TGG - chr8_1:84379933-84379952 Msa1220960:intron 35.0%
TAGTGTGATGCAAAGCAATT+GGG - chr8_1:84379934-84379953 Msa1220960:intron 35.0%
AAACACGAATGAAGAACTCA+TGG + chr8_1:84379985-84380004 None:intergenic 35.0%
CAAAGCAGGTAACTCAAAAA+GGG + chr8_1:84380014-84380033 None:intergenic 35.0%
TCAAAGCAGGTAACTCAAAA+AGG + chr8_1:84380015-84380034 None:intergenic 35.0%
TGTGATTCCTAGCATATCTT+GGG - chr8_1:84380042-84380061 Msa1220960:intron 35.0%
AAATCAGCTGGCCAAAAATT+AGG + chr8_1:84380148-84380167 None:intergenic 35.0%
TCCATCTCAATTAAATCAGC+TGG + chr8_1:84380160-84380179 None:intergenic 35.0%
CCAATATATTACGAAAAGCC+TGG + chr8_1:84380267-84380286 None:intergenic 35.0%
! CCAGGCTTTTCGTAATATAT+TGG - chr8_1:84380264-84380283 Msa1220960:intron 35.0%
AACTGTTTACATTGGAGACT+CGG - chr8_1:84380315-84380334 Msa1220960:intron 35.0%
! TCATTTGTCCCATTGTTTTC+TGG - chr8_1:84380430-84380449 Msa1220960:intron 35.0%
TAACCAAGCCAGAAAACAAT+GGG + chr8_1:84380441-84380460 None:intergenic 35.0%
TTAACCAAGCCAGAAAACAA+TGG + chr8_1:84380442-84380461 None:intergenic 35.0%
TTCTTTACACAGTCTCTAGT+TGG - chr8_1:84380518-84380537 Msa1220960:intron 35.0%
TCTTTACACAGTCTCTAGTT+GGG - chr8_1:84380519-84380538 Msa1220960:intron 35.0%
!! TGAAGTGCATGCTTTTGTTT+TGG - chr8_1:84380543-84380562 Msa1220960:intron 35.0%
!!! GAAGTGCATGCTTTTGTTTT+GGG - chr8_1:84380544-84380563 Msa1220960:intron 35.0%
TGCAATACAAATACACAAGC+AGG - chr8_1:84380638-84380657 Msa1220960:intron 35.0%
AATACAAATACACAAGCAGG+TGG - chr8_1:84380641-84380660 Msa1220960:intron 35.0%
! CAGGTGGCTAATTTTATAAG+CGG - chr8_1:84380657-84380676 Msa1220960:intron 35.0%
! GTCTCTCTTATTTCTCTTTC+AGG - chr8_1:84380696-84380715 Msa1220960:intron 35.0%
AACCACTAGAGAAATCAGAA+TGG + chr8_1:84380746-84380765 None:intergenic 35.0%
! TGTCTGAAATTTCTCATTCC+TGG + chr8_1:84380825-84380844 None:intergenic 35.0%
! GTGTTGTACTGGTATTTAGT+AGG - chr8_1:84380893-84380912 Msa1220960:CDS 35.0%
AGATATGTGAAGTTTCAGAC+CGG - chr8_1:84381082-84381101 Msa1220960:five_prime_UTR 35.0%
TGAAGAACGGATGATTGGAA+GGG + chr8_1:84375960-84375979 None:intergenic 40.0%
TTGAAGAACGGATGATTGGA+AGG + chr8_1:84375961-84375980 None:intergenic 40.0%
GAGATTGAAGAACGGATGAT+TGG + chr8_1:84375965-84375984 None:intergenic 40.0%
! CCATTTGGATTCGGTTTCTA+TGG + chr8_1:84376024-84376043 None:intergenic 40.0%
CCATAGAAACCGAATCCAAA+TGG - chr8_1:84376021-84376040 Msa1220960:three_prime_UTR 40.0%
! GAATTGCTGCCATTTGGATT+CGG + chr8_1:84376033-84376052 None:intergenic 40.0%
GATTGTGAATTGCTGCCATT+TGG + chr8_1:84376039-84376058 None:intergenic 40.0%
ATTCACAATCACAGTGAAGC+TGG - chr8_1:84376049-84376068 Msa1220960:three_prime_UTR 40.0%
! AGGAGTGTACATAGAGAAGA+TGG + chr8_1:84376113-84376132 None:intergenic 40.0%
GAACATCTTGAGCGATGTAA+TGG + chr8_1:84376183-84376202 None:intergenic 40.0%
! CGTCAAGGATTTTGCGATTT+CGG - chr8_1:84376464-84376483 Msa1220960:CDS 40.0%
! CACAACAAAAGGGTATAGGT+AGG + chr8_1:84377139-84377158 None:intergenic 40.0%
! CTACCTATACCCTTTTGTTG+TGG - chr8_1:84377137-84377156 Msa1220960:intron 40.0%
CAAAATCGGCCACAACAAAA+GGG + chr8_1:84377149-84377168 None:intergenic 40.0%
AGTAAGTGCAACTGAACTTG+TGG - chr8_1:84377320-84377339 Msa1220960:intron 40.0%
AAAAGTAGTGCAAGGGAGAT+GGG + chr8_1:84377533-84377552 None:intergenic 40.0%
AAAAAGTAGTGCAAGGGAGA+TGG + chr8_1:84377534-84377553 None:intergenic 40.0%
GGACAGAAAAAGTAGTGCAA+GGG + chr8_1:84377540-84377559 None:intergenic 40.0%
AGGACAGAAAAAGTAGTGCA+AGG + chr8_1:84377541-84377560 None:intergenic 40.0%
ATGACTCACTGGTAAAGGTA+AGG - chr8_1:84377740-84377759 Msa1220960:intron 40.0%
TTTCAACTTGTGAATGGGAC+TGG - chr8_1:84377895-84377914 Msa1220960:CDS 40.0%
! GACTGGTCCCAAATACTTAA+TGG - chr8_1:84377912-84377931 Msa1220960:CDS 40.0%
GAGTCCAATCAGCATTTAGA+AGG + chr8_1:84377968-84377987 None:intergenic 40.0%
CATAGGCTGTATGAGTGAAA+AGG + chr8_1:84378291-84378310 None:intergenic 40.0%
TAATACTGTGCTCTTTGGCA+AGG + chr8_1:84378358-84378377 None:intergenic 40.0%
TTGTCGATCCACTTGCAATA+CGG + chr8_1:84378590-84378609 None:intergenic 40.0%
ATCGACAACTATTCCTCTGA+TGG - chr8_1:84378602-84378621 Msa1220960:intron 40.0%
TACTGTCAACATGACAAACC+TGG + chr8_1:84378631-84378650 None:intergenic 40.0%
AGGTTTGTCATGTTGACAGT+AGG - chr8_1:84378630-84378649 Msa1220960:intron 40.0%
GGTTTGTCATGTTGACAGTA+GGG - chr8_1:84378631-84378650 Msa1220960:intron 40.0%
ACCACAAAGGCTATATGGTA+TGG + chr8_1:84378657-84378676 None:intergenic 40.0%
AAGCAACCACAAAGGCTATA+TGG + chr8_1:84378662-84378681 None:intergenic 40.0%
CTATTTCAAGCTTCATTGCC+TGG + chr8_1:84378863-84378882 None:intergenic 40.0%
!! TTAGTCAAGGGTGCTATAGT+TGG + chr8_1:84378915-84378934 None:intergenic 40.0%
ACTATAGCACCCTTGACTAA+AGG - chr8_1:84378915-84378934 Msa1220960:intron 40.0%
GGGTTATGTCCTTTAGTCAA+GGG + chr8_1:84378927-84378946 None:intergenic 40.0%
AGGGTTATGTCCTTTAGTCA+AGG + chr8_1:84378928-84378947 None:intergenic 40.0%
!! TGTTGATTCATCTGCCATCT+TGG - chr8_1:84378998-84379017 Msa1220960:intron 40.0%
TTGATCTTCAGGCTGATTGT+CGG + chr8_1:84379054-84379073 None:intergenic 40.0%
TTTCCACTGCAAATCACACA+AGG + chr8_1:84379274-84379293 None:intergenic 40.0%
TAATAGGGTTGTTGAGTCAG+GGG - chr8_1:84379358-84379377 Msa1220960:intron 40.0%
TGCATGTTCTTTCATACTGC+TGG - chr8_1:84379498-84379517 Msa1220960:intron 40.0%
AAGAGAAAGCAGACCTAATG+AGG + chr8_1:84379532-84379551 None:intergenic 40.0%
ATTAGGTCTGCTTTCTCTTC+AGG - chr8_1:84379533-84379552 Msa1220960:intron 40.0%
TTTATACACCCACCAAGACT+AGG + chr8_1:84379713-84379732 None:intergenic 40.0%
ACATGAGTCTCCTTTCATCT+CGG - chr8_1:84379764-84379783 Msa1220960:intron 40.0%
GCCTATCCCTAACAAATTGA+AGG + chr8_1:84379869-84379888 None:intergenic 40.0%
AGTGTGATGCAAAGCAATTG+GGG - chr8_1:84379935-84379954 Msa1220960:intron 40.0%
ATCACAGATATGCTCAAAGC+AGG + chr8_1:84380028-84380047 None:intergenic 40.0%
CTGTGATTCCTAGCATATCT+TGG - chr8_1:84380041-84380060 Msa1220960:intron 40.0%
ATTCCTAGCATATCTTGGGT+TGG - chr8_1:84380046-84380065 Msa1220960:intron 40.0%
GCCAAATCTTCGCTGTTAAA+CGG - chr8_1:84380068-84380087 Msa1220960:intron 40.0%
TCCGTTTAACAGCGAAGATT+TGG + chr8_1:84380072-84380091 None:intergenic 40.0%
!! GCTGTTAAACGGATTGAAGT+TGG - chr8_1:84380079-84380098 Msa1220960:intron 40.0%
! GCCAGCTGATTTAATTGAGA+TGG - chr8_1:84380156-84380175 Msa1220960:intron 40.0%
GCTAACGAGTTCAGTTATGA+CGG - chr8_1:84380187-84380206 Msa1220960:intron 40.0%
!! TATGACGGATCTGTTTCTAC+CGG - chr8_1:84380202-84380221 Msa1220960:intron 40.0%
TACCGGTGACATTGTTAAGA+AGG - chr8_1:84380219-84380238 Msa1220960:intron 40.0%
CACCTTCTTAACAATGTCAC+CGG + chr8_1:84380224-84380243 None:intergenic 40.0%
TGTCTACTTGAAGCAGATGT+AGG - chr8_1:84380352-84380371 Msa1220960:intron 40.0%
GCAGATGTAGGAATTGTGAT+TGG - chr8_1:84380364-84380383 Msa1220960:intron 40.0%
! TTGGTTCAAGTTCAAGCCTT+AGG - chr8_1:84380383-84380402 Msa1220960:intron 40.0%
AACACCAAATTGTGTCCCTA+TGG + chr8_1:84380410-84380429 None:intergenic 40.0%
ACGAAGAAAGCTCTTCCAAT+TGG - chr8_1:84380479-84380498 Msa1220960:intron 40.0%
AGAAAGCTCTTCCAATTGGA+AGG - chr8_1:84380483-84380502 Msa1220960:intron 40.0%
GAAAGCTCTTCCAATTGGAA+GGG - chr8_1:84380484-84380503 Msa1220960:intron 40.0%
TCCAATTGGAAGGGTTTATC+TGG - chr8_1:84380493-84380512 Msa1220960:intron 40.0%
AGAGAAATAAGAGAGACAGC+AGG + chr8_1:84380693-84380712 None:intergenic 40.0%
GATGTTGCAATTCAGAGACA+TGG - chr8_1:84380718-84380737 Msa1220960:CDS 40.0%
TGCCATTCTGATTTCTCTAG+TGG - chr8_1:84380741-84380760 Msa1220960:CDS 40.0%
TTTCTCATTCCTGGCATGAT+TGG + chr8_1:84380816-84380835 None:intergenic 40.0%
!! CAGACTTTGAAGTGTTGTAC+TGG - chr8_1:84380882-84380901 Msa1220960:CDS 40.0%
CATCGAGTGGATGAAACACA+CGG + chr8_1:84375903-84375922 None:intergenic 45.0%
!! GGGTTTTGATAGGGTTTGGA+AGG + chr8_1:84375940-84375959 None:intergenic 45.0%
!! GGAAGGGTTTTGATAGGGTT+TGG + chr8_1:84375944-84375963 None:intergenic 45.0%
CATCTTGAGCGATGTAATGG+CGG + chr8_1:84376180-84376199 None:intergenic 45.0%
TACAGTACCCGGTACAATAC+GGG + chr8_1:84376866-84376885 None:intergenic 45.0%
GTACAGTACCCGGTACAATA+CGG + chr8_1:84376867-84376886 None:intergenic 45.0%
GCAAAATCGGCCACAACAAA+AGG + chr8_1:84377150-84377169 None:intergenic 45.0%
AATGGATATAGTGGCGCCAT+AGG - chr8_1:84377213-84377232 Msa1220960:intron 45.0%
ATGGTTGTTGTCTTGGATGG+TGG - chr8_1:84377275-84377294 Msa1220960:intron 45.0%
GATGACGATGACGATAAGCT+TGG - chr8_1:84377673-84377692 Msa1220960:intron 45.0%
GATGCATGACTCACTGGTAA+AGG - chr8_1:84377735-84377754 Msa1220960:intron 45.0%
! AGGCATTTTTCCCGGTAACA+TGG - chr8_1:84377760-84377779 Msa1220960:CDS 45.0%
! GGCATTTTTCCCGGTAACAT+GGG - chr8_1:84377761-84377780 Msa1220960:CDS 45.0%
CAATTAAGGCCCATGTTACC+GGG + chr8_1:84377773-84377792 None:intergenic 45.0%
CCAATTAAGGCCCATGTTAC+CGG + chr8_1:84377774-84377793 None:intergenic 45.0%
CGGTAACATGGGCCTTAATT+GGG - chr8_1:84377772-84377791 Msa1220960:CDS 45.0%
GGTAACATGGGCCTTAATTG+GGG - chr8_1:84377773-84377792 Msa1220960:CDS 45.0%
TGGTGTATAGGAATGGGGAT+TGG - chr8_1:84378331-84378350 Msa1220960:CDS 45.0%
! TTTCTGTTGGCTACTGCTTC+TGG - chr8_1:84378404-84378423 Msa1220960:CDS 45.0%
! TTCTGTTGGCTACTGCTTCT+GGG - chr8_1:84378405-84378424 Msa1220960:CDS 45.0%
! ACTGCTTCTGGGAAGATTGA+AGG - chr8_1:84378416-84378435 Msa1220960:CDS 45.0%
ATGAGGCTGTATGCCTTTCT+TGG - chr8_1:84378521-84378540 Msa1220960:CDS 45.0%
TGAGTACTTTCTTCGAGGTC+TGG + chr8_1:84378566-84378585 None:intergenic 45.0%
TGTCGATCCACTTGCAATAC+GGG + chr8_1:84378589-84378608 None:intergenic 45.0%
CTATTCCTCTGATGGTTTCC+AGG - chr8_1:84378610-84378629 Msa1220960:intron 45.0%
ACAAACCTGGAAACCATCAG+AGG + chr8_1:84378618-84378637 None:intergenic 45.0%
GCCATACCATATAGCCTTTG+TGG - chr8_1:84378653-84378672 Msa1220960:intron 45.0%
GCTATAGTTGGCTGAAAGAG+TGG + chr8_1:84378903-84378922 None:intergenic 45.0%
TCACGAGACGATCTTCTTCA+GGG + chr8_1:84378947-84378966 None:intergenic 45.0%
ATCACGAGACGATCTTCTTC+AGG + chr8_1:84378948-84378967 None:intergenic 45.0%
! TCAGGCTGATTGTCGGATTT+TGG + chr8_1:84379047-84379066 None:intergenic 45.0%
GAATGTTGTCTTCTGACCTC+AGG - chr8_1:84379081-84379100 Msa1220960:intron 45.0%
TTCTGACCTCAGGAACACAT+GGG - chr8_1:84379091-84379110 Msa1220960:intron 45.0%
! TGACCTTGTGTGATTTGCAG+TGG - chr8_1:84379268-84379287 Msa1220960:intron 45.0%
TGTTGAGTCAGGGGTTCTTA+AGG - chr8_1:84379367-84379386 Msa1220960:intron 45.0%
GTTGAGTCAGGGGTTCTTAA+GGG - chr8_1:84379368-84379387 Msa1220960:intron 45.0%
ATAGAAGATGTAAAGCGCGC+TGG - chr8_1:84379398-84379417 Msa1220960:intron 45.0%
!! TGGAGAGCGTTTGATTCTTC+AGG - chr8_1:84379418-84379437 Msa1220960:intron 45.0%
GAGCGTTTGATTCTTCAGGA+TGG - chr8_1:84379422-84379441 Msa1220960:intron 45.0%
GTTCTTTCATACTGCTGGTG+TGG - chr8_1:84379503-84379522 Msa1220960:intron 45.0%
ATTGTGTCCATTTCGCACTC+TGG - chr8_1:84379673-84379692 Msa1220960:intron 45.0%
TTGTGTCCATTTCGCACTCT+GGG - chr8_1:84379674-84379693 Msa1220960:intron 45.0%
CACGAATGAAGAACTCATGG+TGG + chr8_1:84379982-84380001 None:intergenic 45.0%
CGGTGACATTGTTAAGAAGG+TGG - chr8_1:84380222-84380241 Msa1220960:intron 45.0%
AAAGCCTGGACCTTGTCAAT+GGG + chr8_1:84380253-84380272 None:intergenic 45.0%
AAAAGCCTGGACCTTGTCAA+TGG + chr8_1:84380254-84380273 None:intergenic 45.0%
TGTTTACATTGGAGACTCGG+TGG - chr8_1:84380318-84380337 Msa1220960:intron 45.0%
! GTTTACATTGGAGACTCGGT+GGG - chr8_1:84380319-84380338 Msa1220960:intron 45.0%
AGTTCAAGCCTTAGGACCAT+AGG - chr8_1:84380391-84380410 Msa1220960:intron 45.0%
GTTCAAGCCTTAGGACCATA+GGG - chr8_1:84380392-84380411 Msa1220960:intron 45.0%
ATTGTGTCCCTATGGTCCTA+AGG + chr8_1:84380402-84380421 None:intergenic 45.0%
AGGACCATAGGGACACAATT+TGG - chr8_1:84380403-84380422 Msa1220960:intron 45.0%
!!! TGTCCCATTGTTTTCTGGCT+TGG - chr8_1:84380435-84380454 Msa1220960:intron 45.0%
GCCAGATAAACCCTTCCAAT+TGG + chr8_1:84380497-84380516 None:intergenic 45.0%
! TAGTGGTTCTTCGAAGCATC+TGG - chr8_1:84380758-84380777 Msa1220960:CDS 45.0%
ACATACGTAAGTCACTCAGC+CGG + chr8_1:84381104-84381123 None:intergenic 45.0%
TCATCCACTCGATGCGCATA+CGG - chr8_1:84375909-84375928 Msa1220960:three_prime_UTR 50.0%
TACCGGTACCCGTATTGTAC+CGG - chr8_1:84376855-84376874 Msa1220960:intron 50.0%
ATAGGTACGGGTACAGTACC+CGG + chr8_1:84376877-84376896 None:intergenic 50.0%
! CGGCCACAACAAAAGGGTAT+AGG + chr8_1:84377143-84377162 None:intergenic 50.0%
ATTCCGCTACGCAACACCTA+TGG + chr8_1:84377232-84377251 None:intergenic 50.0%
AGCTTGGACTCTCTCAGTTG+AGG - chr8_1:84377689-84377708 Msa1220960:intron 50.0%
GCTGAAGATGCATGACTCAC+TGG - chr8_1:84377729-84377748 Msa1220960:intron 50.0%
CCGGTAACATGGGCCTTAAT+TGG - chr8_1:84377771-84377790 Msa1220960:CDS 50.0%
TGGTTGGAGTATGACCCTGA+GGG - chr8_1:84378043-84378062 Msa1220960:CDS 50.0%
ATCGGAAAGGATGTCCCTCA+GGG + chr8_1:84378060-84378079 None:intergenic 50.0%
TGAGGGACATCCTTTCCGAT+GGG - chr8_1:84378060-84378079 Msa1220960:CDS 50.0%
GTTCTTGTTCCCCATCGGAA+AGG + chr8_1:84378073-84378092 None:intergenic 50.0%
AAGGCATACAGCCTCATGCA+AGG + chr8_1:84378518-84378537 None:intergenic 50.0%
ACGGGTGAGTACTTTCTTCG+AGG + chr8_1:84378571-84378590 None:intergenic 50.0%
GTACTCACCCGTATTGCAAG+TGG - chr8_1:84378579-84378598 Msa1220960:intron 50.0%
CTTCTGACCTCAGGAACACA+TGG - chr8_1:84379090-84379109 Msa1220960:intron 50.0%
TCTGACCTCAGGAACACATG+GGG - chr8_1:84379092-84379111 Msa1220960:intron 50.0%
GACAGGAGTCATCCTAGTCT+TGG - chr8_1:84379698-84379717 Msa1220960:intron 50.0%
!! AGGAGTCATCCTAGTCTTGG+TGG - chr8_1:84379701-84379720 Msa1220960:intron 50.0%
!! GGAGTCATCCTAGTCTTGGT+GGG - chr8_1:84379702-84379721 Msa1220960:intron 50.0%
TGGCCAACCCAAGATATGCT+AGG + chr8_1:84380052-84380071 None:intergenic 50.0%
CATGCGCCCAAATTCATGCT+AGG - chr8_1:84380589-84380608 Msa1220960:intron 50.0%
CTCATTCCTGGCATGATTGG+AGG + chr8_1:84380813-84380832 None:intergenic 50.0%
GGTGCAACTGCTTCGCTTGT+GGG + chr8_1:84375799-84375818 None:intergenic 55.0%
TGGTGCAACTGCTTCGCTTG+TGG + chr8_1:84375800-84375819 None:intergenic 55.0%
CGAGTGGATGAAACACACGG+CGG + chr8_1:84375900-84375919 None:intergenic 55.0%
! CTGGACTTGCGAAGCGTTTC+TGG - chr8_1:84376068-84376087 Msa1220960:three_prime_UTR 55.0%
ACCGGTACCCGTATTGTACC+GGG - chr8_1:84376856-84376875 Msa1220960:intron 55.0%
ACCCGGTACAATACGGGTAC+CGG + chr8_1:84376860-84376879 None:intergenic 55.0%
GGAGATGGGTAGGTCTTGCA+CGG + chr8_1:84377519-84377538 None:intergenic 55.0%
GTAGTGCAAGGGAGATGGGT+AGG + chr8_1:84377529-84377548 None:intergenic 55.0%
ACATGGGCCTTAATTGGGGC+AGG - chr8_1:84377777-84377796 Msa1220960:CDS 55.0%
GTGGTTGGAGTATGACCCTG+AGG - chr8_1:84378042-84378061 Msa1220960:CDS 55.0%
CATCGGAAAGGATGTCCCTC+AGG + chr8_1:84378061-84378080 None:intergenic 55.0%
CTGAGGGACATCCTTTCCGA+TGG - chr8_1:84378059-84378078 Msa1220960:CDS 55.0%
GAGGGACATCCTTTCCGATG+GGG - chr8_1:84378061-84378080 Msa1220960:CDS 55.0%
GTGCCATGACTCCTTGCATG+AGG - chr8_1:84378504-84378523 Msa1220960:CDS 55.0%
CAGCCTCATGCAAGGAGTCA+TGG + chr8_1:84378510-84378529 None:intergenic 55.0%
GAGAACCCCATGTGTTCCTG+AGG + chr8_1:84379100-84379119 None:intergenic 55.0%
GCTGGTGTGGTGACCTCATT+AGG - chr8_1:84379516-84379535 Msa1220960:intron 55.0%
CTGTCTCCCAGAGTGCGAAA+TGG + chr8_1:84379683-84379702 None:intergenic 55.0%
! CATTTCGCACTCTGGGAGAC+AGG - chr8_1:84379681-84379700 Msa1220960:intron 55.0%
GGTGGAGTCTCCCATTGACA+AGG - chr8_1:84380240-84380259 Msa1220960:intron 55.0%
GTCTCCCATTGACAAGGTCC+AGG - chr8_1:84380246-84380265 Msa1220960:intron 55.0%
GAGAGACAGCAGGCAATCTG+TGG + chr8_1:84380683-84380702 None:intergenic 55.0%
CTGTCTCCTCCAATCATGCC+AGG - chr8_1:84380804-84380823 Msa1220960:CDS 55.0%
GAAGCAGTTGCACCAGCAGC+AGG - chr8_1:84375805-84375824 Msa1220960:three_prime_UTR 60.0%
TCCACTCGATGCGCATACGG+TGG - chr8_1:84375912-84375931 Msa1220960:three_prime_UTR 60.0%
ACCACCGTATGCGCATCGAG+TGG + chr8_1:84375916-84375935 None:intergenic 60.0%
! GCGCCATAGGTGTTGCGTAG+CGG - chr8_1:84377226-84377245 Msa1220960:intron 60.0%
GCAGTTGCACCAGCAGCAGG+AGG - chr8_1:84375808-84375827 Msa1220960:three_prime_UTR 65.0%
AGACGAGTGCCTCCTGCTGC+TGG + chr8_1:84375820-84375839 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 84375792 84381135 84375792 ID=Msa1220960;Name=Msa1220960
chr8_1 mRNA 84375792 84381135 84375792 ID=Msa1220960-mRNA-1;Parent=Msa1220960;Name=Msa1220960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=128|1|1|1|1|1|6|562|599
chr8_1 exon 84375792 84376766 84375792 ID=Msa1220960-mRNA-1:exon:30268;Parent=Msa1220960-mRNA-1
chr8_1 exon 84377373 84377639 84377373 ID=Msa1220960-mRNA-1:exon:30267;Parent=Msa1220960-mRNA-1
chr8_1 exon 84377745 84378156 84377745 ID=Msa1220960-mRNA-1:exon:30266;Parent=Msa1220960-mRNA-1
chr8_1 exon 84378296 84378586 84378296 ID=Msa1220960-mRNA-1:exon:30265;Parent=Msa1220960-mRNA-1
chr8_1 exon 84379171 84379279 84379171 ID=Msa1220960-mRNA-1:exon:30264;Parent=Msa1220960-mRNA-1
chr8_1 exon 84380700 84381135 84380700 ID=Msa1220960-mRNA-1:exon:30263;Parent=Msa1220960-mRNA-1
chr8_1 five_prime_UTR 84381008 84381135 84381008 ID=Msa1220960-mRNA-1:five_prime_utr;Parent=Msa1220960-mRNA-1
chr8_1 CDS 84380700 84381007 84380700 ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1
chr8_1 CDS 84379171 84379279 84379171 ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1
chr8_1 CDS 84378296 84378586 84378296 ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1
chr8_1 CDS 84377745 84378156 84377745 ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1
chr8_1 CDS 84377373 84377639 84377373 ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1
chr8_1 CDS 84376354 84376766 84376354 ID=Msa1220960-mRNA-1:cds;Parent=Msa1220960-mRNA-1
chr8_1 three_prime_UTR 84375792 84376353 84375792 ID=Msa1220960-mRNA-1:three_prime_utr;Parent=Msa1220960-mRNA-1
Gene Sequence

>Msa1220960

ATGCGCATACGGTGGTTCCTTCCAAACCCTATCAAAACCCTTCCAATCATCCGTTCTTCAATCTCATTTCGAAACTTCGTTCCTTTCAATTCAAGATCGTTCCATAGAAACCGAATCCAAATGGCAGCAATTCACAATCACAGTGAAGCTGGACTTGCGAAGCGTTTCTGGATCAAGTTCAACCGTGAATCCATCTTCTCTATGTACACTCCTTTTGTTATCTCTTTAGCTTCCGGTAACTTGAAGATCGATTCTTTCCGCCATTACATCGCTCAAGATGTTCATTTTCTTCGCGCTTTTGTTCAAGCGTATGAGTCGGCAGAAGACTGTGCTGATGACGATGACGATAAGCTTGGACTCTCTCAGTTGAGGAAGAATGTTTTAGAGGAGCTGAAGATGCATGACTCACTGGTAAAGGAATGGGGATTGGACCTTGCCAAAGAGCACAGTATTAACTCAGCAACAGTTAAGTATACAGACTTTCTGTTGGCTACTGCTTCTGGGAAGATTGAAGGACTGAAAAGTTCTGGTAAACTTGCAACACCATTTGAGAAAACCAAAATTGCTGCTTATACTTTAGGTGCCATGACTCCTTGCATGAGGCTGTATGCCTTTCTTGGTAAAAAGTTCAAGGAACTTCCAGACCTCGAAGAAAGTACTCACCCGTATTGCAAGTGGATCGACAACTATTCCTCTGATGGTTTCCAGGCTTCTGCTCTGCAAACCGAAGAATTGCTCGACAAACTAAGTGTCTCTTTAACTGGCGAAGAACTCGATGTCATTGAAAAGCTTTATTACCAGGCAATGAAGCTTGAAATAGACTTCTTCAATGCTCAACCACTCTTTCAGCCAACTATAGCACCCTTGACTAAAGGACATAACCCTGAAGAAGATCGTCTCGTGATTTTTTCCGATTTTGATTTAACATGCACTGTTGTTGATTCATCTGCCATCTTGGCAGAAATTGCTATAGTGACAGCACCAAAATCCGACAATCAGCCTGAAGATCAAATAGCTCGAATGTTGTCTTCTGACCTCAGGAACACATGGGGTTCTCTATCCAAACAGTATACAGAGGAGTATGAGCAATGTATAGAAAGCATTATGCCTGCCAATAAATTGGAAAATTTTGATTATAAAGAACTGTCTACAGCACTTGAGCAACTTTCAAAGTTCGAGAACTCAGCAAATAATAGGGTTGTTGAGTCAGGGGTTCTTAAGGGTATAAATATAGAAGATGTAAAGCGCGCTGGAGAGCGTTTGATTCTTCAGGATGGTTGCACTGACTTTTTTAAGAGAGTTGTAAAGAATAAAAATTTGAATGCCAATGTGCATGTTCTTTCATACTGCTGGTGTGGTGACCTCATTAGGTCTGCTTTCTCTTCAGCTGATTTAATTGAGATGGATGTTCATGCTAACGAGTTCAGTTATGACGGATCTGTTTCTACCGGTGACATTGTTAAGAAGGTGGAGTCTCCCATTGACAAGGTCCAGGCTTTTCGTAATATATTGGAAAATTGCAACGATGACAAGAAAAAATTAACTGTTTACATTGGAGACTCGGTGGGTGATTTACTTTGTCTACTTGAAGCAGATGTAGGAATTGTGATTGGTTCAAGTTCAAGCCTTAGGACCATAGGGACACAATTTGGTGTTTCATTTGTCCCATTGTTTTCTGGCTTGGTTAAGAAACAGAAAGAATACAACGAAGAAAGCTCTTCCAATTGGAAGGGTTTATCTGGCATTCTTTACACAGTCTCTAGTTGGGCTGAAGTGCATGCTTTTGTTTTGGGTTGCTAG

Protein sequence

>Msa1220960

MRIRWFLPNPIKTLPIIRSSISFRNFVPFNSRSFHRNRIQMAAIHNHSEAGLAKRFWIKFNRESIFSMYTPFVISLASGNLKIDSFRHYIAQDVHFLRAFVQAYESAEDCADDDDDKLGLSQLRKNVLEELKMHDSLVKEWGLDLAKEHSINSATVKYTDFLLATASGKIEGLKSSGKLATPFEKTKIAAYTLGAMTPCMRLYAFLGKKFKELPDLEESTHPYCKWIDNYSSDGFQASALQTEELLDKLSVSLTGEELDVIEKLYYQAMKLEIDFFNAQPLFQPTIAPLTKGHNPEEDRLVIFSDFDLTCTVVDSSAILAEIAIVTAPKSDNQPEDQIARMLSSDLRNTWGSLSKQYTEEYEQCIESIMPANKLENFDYKELSTALEQLSKFENSANNRVVESGVLKGINIEDVKRAGERLILQDGCTDFFKRVVKNKNLNANVHVLSYCWCGDLIRSAFSSADLIEMDVHANEFSYDGSVSTGDIVKKVESPIDKVQAFRNILENCNDDKKKLTVYIGDSVGDLLCLLEADVGIVIGSSSSLRTIGTQFGVSFVPLFSGLVKKQKEYNEESSSNWKGLSGILYTVSSWAEVHAFVLGC*