AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032150 MtrunA17_Chr1g0190441 97.841 602 10 1 1 599 1 602 0.0 1213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032150 AT5G32470.1 66.556 601 178 7 10 598 26 615 0.0 760

Find 153 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGACTTGCGAAGCGTTTC+TGG 0.062503 1_1:-59124916 Msa0032150:CDS
GTCTCTCTTATTTCTCTTTC+AGG 0.089732 1_1:-59120284 Msa0032150:three_prime_UTR
TTTCTGTTGGCTACTGCTTC+TGG 0.123278 1_1:-59122577 Msa0032150:CDS
TCAGGCTGATTGTCGGATTT+TGG 0.180316 1_1:+59121937 None:intergenic
GAGAATCATCATACATTTAT+TGG 0.192665 1_1:+59121807 None:intergenic
GCAGCTTCATTATAGATTAA+TGG 0.193575 1_1:-59119969 Msa0032150:three_prime_UTR
TAAAGTATAAGCAGCAATTT+TGG 0.205603 1_1:+59122501 None:intergenic
CTGCTGAATCCTTAAAATTA+TGG 0.221221 1_1:+59120053 None:intergenic
AAAATTGCTGCTTATACTTT+AGG 0.226024 1_1:-59122499 Msa0032150:CDS
TCGAGAACTCAGCAAATAAT+AGG 0.227356 1_1:-59121639 Msa0032150:CDS
TTATCAATTCCAGTAGATTA+TGG 0.241020 1_1:-59119934 Msa0032150:three_prime_UTR
CCATTTGGATTCGGTTTCTA+TGG 0.261612 1_1:+59124963 None:intergenic
CTATTCCTCTGATGGTTTCC+AGG 0.273448 1_1:-59122371 Msa0032150:intron
TCCAATTGGAAGGGTTTATC+TGG 0.273912 1_1:-59120487 Msa0032150:CDS
TGTCTGAAATTTCTCATTCC+TGG 0.275265 1_1:+59120158 None:intergenic
TGGAGAGCGTTTGATTCTTC+AGG 0.303161 1_1:-59121563 Msa0032150:CDS
ATTAGGTCTGCTTTCTCTTC+AGG 0.304553 1_1:-59121448 Msa0032150:intron
TGTTGAGTCAGGGGTTCTTA+AGG 0.313829 1_1:-59121614 Msa0032150:CDS
ATGAGGCTGTATGCCTTTCT+TGG 0.316675 1_1:-59122460 Msa0032150:CDS
ATCACGAGACGATCTTCTTC+AGG 0.318505 1_1:+59122036 None:intergenic
GGTGCAACTGCTTCGCTTGT+GGG 0.329214 1_1:+59125188 None:intergenic
TATCAATTCCAGTAGATTAT+GGG 0.336583 1_1:-59119933 Msa0032150:three_prime_UTR
AAACTAAGTGTCTCTTTAAC+TGG 0.341757 1_1:-59122177 Msa0032150:CDS
AGGACCATAGGGACACAATT+TGG 0.349524 1_1:-59120577 Msa0032150:CDS
AATAATAGGGTTGTTGAGTC+AGG 0.361953 1_1:-59121625 Msa0032150:CDS
ATTCGAGCTATTTGATCTTC+AGG 0.363900 1_1:+59121919 None:intergenic
GCTGGTGTGGTGACCTCATT+AGG 0.364039 1_1:-59121465 Msa0032150:CDS
TTCTTTACACAGTCTCTAGT+TGG 0.371085 1_1:-59120462 Msa0032150:CDS
TTTCTCATTCCTGGCATGAT+TGG 0.373067 1_1:+59120167 None:intergenic
TGAGTTAATACTGTGCTCTT+TGG 0.378416 1_1:+59122621 None:intergenic
GTTGAGTCAGGGGTTCTTAA+GGG 0.382971 1_1:-59121613 Msa0032150:CDS
ATTGAAGGACTGAAAAGTTC+TGG 0.386533 1_1:-59122550 Msa0032150:CDS
TGTTGATTCATCTGCCATCT+TGG 0.390739 1_1:-59121983 Msa0032150:CDS
TTCTGTTGGCTACTGCTTCT+GGG 0.391154 1_1:-59122576 Msa0032150:CDS
TTTGTTATCTCTTTAGCTTC+CGG 0.395712 1_1:-59124851 Msa0032150:CDS
TTTCAAATGCTTGTTAGATC+AGG 0.397897 1_1:-59120129 Msa0032150:three_prime_UTR
GATTGTGAATTGCTGCCATT+TGG 0.400081 1_1:+59124948 None:intergenic
TAGTGGTTCTTCGAAGCATC+TGG 0.405757 1_1:-59120222 Msa0032150:three_prime_UTR
TGAGTACTTTCTTCGAGGTC+TGG 0.410220 1_1:+59122418 None:intergenic
CATTGAAAAGCTTTATTACC+AGG 0.413331 1_1:-59122139 Msa0032150:CDS
ATACTCCTCTGTATACTGTT+TGG 0.415844 1_1:+59121858 None:intergenic
GAGATTGAAGAACGGATGAT+TGG 0.415990 1_1:+59125022 None:intergenic
CTCATTCCTGGCATGATTGG+AGG 0.418484 1_1:+59120170 None:intergenic
TGCATGTTCTTTCATACTGC+TGG 0.421221 1_1:-59121483 Msa0032150:CDS
TTGGTTCAAGTTCAAGCCTT+AGG 0.425761 1_1:-59120597 Msa0032150:CDS
GCCAGATAAACCCTTCCAAT+TGG 0.432865 1_1:+59120486 None:intergenic
AGTGCATGTTAAATCAAAAT+CGG 0.433883 1_1:+59122008 None:intergenic
ATTTATGCATATGAATTTCA+AGG 0.434571 1_1:+59120004 None:intergenic
CTATTTCAAGCTTCATTGCC+TGG 0.435585 1_1:+59122121 None:intergenic
CGAGAACTCAGCAAATAATA+GGG 0.436421 1_1:-59121638 Msa0032150:CDS
CCAATATATTACGAAAAGCC+TGG 0.439834 1_1:+59120716 None:intergenic
ACGAAGAAAGCTCTTCCAAT+TGG 0.441203 1_1:-59120501 Msa0032150:CDS
TCTTTACACAGTCTCTAGTT+GGG 0.443386 1_1:-59120461 Msa0032150:CDS
GTGTTGTACTGGTATTTAGT+AGG 0.445056 1_1:-59120087 Msa0032150:three_prime_UTR
GAAGCAGTTGCACCAGCAGC+AGG 0.449856 1_1:-59125179 Msa0032150:five_prime_UTR
AGACGAGTGCCTCCTGCTGC+TGG 0.453587 1_1:+59125167 None:intergenic
CAGACTTTGAAGTGTTGTAC+TGG 0.455330 1_1:-59120098 Msa0032150:three_prime_UTR
ATCATCATACATTTATTGGC+AGG 0.455724 1_1:+59121811 None:intergenic
TGGTGCAACTGCTTCGCTTG+TGG 0.456055 1_1:+59125187 None:intergenic
TTAGTCAAGGGTGCTATAGT+TGG 0.459081 1_1:+59122069 None:intergenic
TAGTTTGTCGAGCAATTCTT+CGG 0.468928 1_1:+59122194 None:intergenic
GAATTGCTGCCATTTGGATT+CGG 0.469510 1_1:+59124954 None:intergenic
TACCGGTGACATTGTTAAGA+AGG 0.475372 1_1:-59120761 Msa0032150:CDS
GCCAGCTGATTTAATTGAGA+TGG 0.477959 1_1:-59120824 Msa0032150:intron
TTGATCTTCAGGCTGATTGT+CGG 0.478317 1_1:+59121930 None:intergenic
AGGGTTATGTCCTTTAGTCA+AGG 0.480433 1_1:+59122056 None:intergenic
TGCCATTCTGATTTCTCTAG+TGG 0.480978 1_1:-59120239 Msa0032150:three_prime_UTR
AGAATCGATCTTCAAGTTAC+CGG 0.480978 1_1:+59124832 None:intergenic
TGTCTACTTGAAGCAGATGT+AGG 0.483362 1_1:-59120628 Msa0032150:CDS
TGTCGATCCACTTGCAATAC+GGG 0.484420 1_1:+59122395 None:intergenic
GATGCATGACTCACTGGTAA+AGG 0.484632 1_1:-59123247 Msa0032150:intron
ATTCACAATCACAGTGAAGC+TGG 0.488032 1_1:-59124935 Msa0032150:CDS
TTGTCGATCCACTTGCAATA+CGG 0.489328 1_1:+59122394 None:intergenic
AAAAGCCTGGACCTTGTCAA+TGG 0.490746 1_1:+59120729 None:intergenic
GGGTTATGTCCTTTAGTCAA+GGG 0.495478 1_1:+59122057 None:intergenic
AGAAAGCTCTTCCAATTGGA+AGG 0.496687 1_1:-59120497 Msa0032150:CDS
AGGAGTGTACATAGAGAAGA+TGG 0.501365 1_1:+59124874 None:intergenic
TTGAAGAACGGATGATTGGA+AGG 0.503290 1_1:+59125026 None:intergenic
GAACATCTTGAGCGATGTAA+TGG 0.505674 1_1:+59124804 None:intergenic
GAAGCTAAAGAGATAACAAA+AGG 0.510492 1_1:+59124854 None:intergenic
TAAGTATACAGACTTTCTGT+TGG 0.511176 1_1:-59122590 Msa0032150:CDS
TATAGCAATTTCTGCCAAGA+TGG 0.512042 1_1:+59121969 None:intergenic
ACTGCTTCTGGGAAGATTGA+AGG 0.512264 1_1:-59122565 Msa0032150:CDS
CTGTCTCCTCCAATCATGCC+AGG 0.512366 1_1:-59120176 Msa0032150:three_prime_UTR
AAAGCCTGGACCTTGTCAAT+GGG 0.515036 1_1:+59120730 None:intergenic
CTTCTGACCTCAGGAACACA+TGG 0.515072 1_1:-59121891 Msa0032150:CDS
TCACGAGACGATCTTCTTCA+GGG 0.515838 1_1:+59122037 None:intergenic
GCTGAAGATGCATGACTCAC+TGG 0.516947 1_1:-59123253 Msa0032150:CDS
TAACCAAGCCAGAAAACAAT+GGG 0.517719 1_1:+59120542 None:intergenic
AGTTCAAGCCTTAGGACCAT+AGG 0.519707 1_1:-59120589 Msa0032150:CDS
ACGGGTGAGTACTTTCTTCG+AGG 0.521166 1_1:+59122413 None:intergenic
CCATAGAAACCGAATCCAAA+TGG 0.521368 1_1:-59124963 Msa0032150:CDS
AACTGTTTACATTGGAGACT+CGG 0.521999 1_1:-59120665 Msa0032150:CDS
GTCTCCCATTGACAAGGTCC+AGG 0.526292 1_1:-59120734 Msa0032150:CDS
ACTATAGCACCCTTGACTAA+AGG 0.527516 1_1:-59122066 Msa0032150:CDS
AACACCAAATTGTGTCCCTA+TGG 0.528253 1_1:+59120573 None:intergenic
TGCAATACAAATACACAAGC+AGG 0.530340 1_1:-59120342 Msa0032150:three_prime_UTR
ATTGTGTCCCTATGGTCCTA+AGG 0.541144 1_1:+59120581 None:intergenic
ATCGACAACTATTCCTCTGA+TGG 0.541822 1_1:-59122379 Msa0032150:CDS
TCATCCACTCGATGCGCATA+CGG 0.543245 1_1:-59125075 Msa0032150:exon
AAGAGAAAGCAGACCTAATG+AGG 0.544117 1_1:+59121452 None:intergenic
GAATGTTGTCTTCTGACCTC+AGG 0.547502 1_1:-59121900 Msa0032150:CDS
CAGCCTCATGCAAGGAGTCA+TGG 0.552331 1_1:+59122474 None:intergenic
GTTAATGGTGTATAGGAATG+GGG 0.555143 1_1:-59122655 Msa0032150:intron
TGGAACGATCTTGAATTGAA+AGG 0.556469 1_1:+59124983 None:intergenic
ATAATAGGGTTGTTGAGTCA+GGG 0.558224 1_1:-59121624 Msa0032150:CDS
TGAAGAACGGATGATTGGAA+GGG 0.558401 1_1:+59125027 None:intergenic
GCAGATGTAGGAATTGTGAT+TGG 0.562607 1_1:-59120616 Msa0032150:CDS
GTTCTTTCATACTGCTGGTG+TGG 0.562655 1_1:-59121478 Msa0032150:CDS
TAATACTGTGCTCTTTGGCA+AGG 0.563964 1_1:+59122626 None:intergenic
CATGCGCCCAAATTCATGCT+AGG 0.564247 1_1:-59120391 Msa0032150:three_prime_UTR
GAAAGCTCTTCCAATTGGAA+GGG 0.564829 1_1:-59120496 Msa0032150:CDS
GAGCGTTTGATTCTTCAGGA+TGG 0.565677 1_1:-59121559 Msa0032150:CDS
ACATAGAGAAGATGGATTCA+CGG 0.572125 1_1:+59124882 None:intergenic
ATAGAAGATGTAAAGCGCGC+TGG 0.574979 1_1:-59121583 Msa0032150:CDS
TGGTGTATAGGAATGGGGAT+TGG 0.575334 1_1:-59122650 Msa0032150:intron
GATGACGATGACGATAAGCT+TGG 0.577286 1_1:-59123309 Msa0032150:CDS
ATGATTTCATAGGTATGAGT+CGG 0.580799 1_1:-59123346 Msa0032150:intron
GTTCAAGCCTTAGGACCATA+GGG 0.581445 1_1:-59120588 Msa0032150:CDS
AGAGAAATAAGAGAGACAGC+AGG 0.584475 1_1:+59120290 None:intergenic
AGATATGTGAAGTTTCAGAC+CGG 0.589399 1_1:-59119902 Msa0032150:three_prime_UTR
TTCTGACCTCAGGAACACAT+GGG 0.589740 1_1:-59121890 Msa0032150:CDS
TATGACGGATCTGTTTCTAC+CGG 0.591731 1_1:-59120778 Msa0032150:CDS
AGCTTGGACTCTCTCAGTTG+AGG 0.591841 1_1:-59123293 Msa0032150:CDS
CACCTTCTTAACAATGTCAC+CGG 0.597188 1_1:+59120759 None:intergenic
GTACTCACCCGTATTGCAAG+TGG 0.597239 1_1:-59122402 Msa0032150:CDS
TTCGAAATGAGATTGAAGAA+CGG 0.598266 1_1:+59125014 None:intergenic
GCTATAGTTGGCTGAAAGAG+TGG 0.601212 1_1:+59122081 None:intergenic
GCAGTTGCACCAGCAGCAGG+AGG 0.604817 1_1:-59125176 Msa0032150:five_prime_UTR
TAATAGGGTTGTTGAGTCAG+GGG 0.605903 1_1:-59121623 Msa0032150:CDS
TTAACCAAGCCAGAAAACAA+TGG 0.607882 1_1:+59120541 None:intergenic
GAGAGACAGCAGGCAATCTG+TGG 0.609553 1_1:+59120300 None:intergenic
CGGTGACATTGTTAAGAAGG+TGG 0.609806 1_1:-59120758 Msa0032150:CDS
GTTTACATTGGAGACTCGGT+GGG 0.614786 1_1:-59120661 Msa0032150:CDS
GTGCCATGACTCCTTGCATG+AGG 0.617970 1_1:-59122477 Msa0032150:CDS
GCTAACGAGTTCAGTTATGA+CGG 0.620110 1_1:-59120793 Msa0032150:CDS
CATCTTGAGCGATGTAATGG+CGG 0.622829 1_1:+59124807 None:intergenic
AAGGCATACAGCCTCATGCA+AGG 0.640683 1_1:+59122466 None:intergenic
ACCACCGTATGCGCATCGAG+TGG 0.641894 1_1:+59125071 None:intergenic
TCCACTCGATGCGCATACGG+TGG 0.643704 1_1:-59125072 Msa0032150:exon
GAGAACCCCATGTGTTCCTG+AGG 0.647944 1_1:+59121884 None:intergenic
TGTTTACATTGGAGACTCGG+TGG 0.650130 1_1:-59120662 Msa0032150:CDS
AACCACTAGAGAAATCAGAA+TGG 0.651741 1_1:+59120237 None:intergenic
GGTGGAGTCTCCCATTGACA+AGG 0.664349 1_1:-59120740 Msa0032150:CDS
CATCGAGTGGATGAAACACA+CGG 0.665790 1_1:+59125084 None:intergenic
ACAAACCTGGAAACCATCAG+AGG 0.677140 1_1:+59122366 None:intergenic
ACATACGTAAGTCACTCAGC+CGG 0.678963 1_1:+59119883 None:intergenic
GATGTTGCAATTCAGAGACA+TGG 0.679874 1_1:-59120262 Msa0032150:three_prime_UTR
GTATGAAAGAACATGCACAT+TGG 0.680060 1_1:+59121489 None:intergenic
TCTGACCTCAGGAACACATG+GGG 0.685059 1_1:-59121889 Msa0032150:CDS
TCTATCCAAACAGTATACAG+AGG 0.708451 1_1:-59121863 Msa0032150:CDS
AATACAAATACACAAGCAGG+TGG 0.724838 1_1:-59120339 Msa0032150:three_prime_UTR
CGAGTGGATGAAACACACGG+CGG 0.899207 1_1:+59125087 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACTATATTTTCATAAAAA+TGG + chr1_1:59120732-59120751 None:intergenic 10.0%
!!! TTTTTAAAATATTACAGTAT+GGG + chr1_1:59120900-59120919 None:intergenic 10.0%
!!! ATTTTTAAAATATTACAGTA+TGG + chr1_1:59120901-59120920 None:intergenic 10.0%
!! TTATTCTTATATTTGAATTT+AGG - chr1_1:59122831-59122850 Msa0032150:intron 10.0%
!! AAATAAATTTATAAGACAAT+AGG + chr1_1:59124207-59124226 None:intergenic 10.0%
!!! AAATTTATTTTCCTAATTTT+TGG - chr1_1:59124217-59124236 Msa0032150:intron 10.0%
!!! TTTTAAAATATTACAGTATG+GGG + chr1_1:59120899-59120918 None:intergenic 15.0%
!! TTATTGAAAGAATTACATTA+TGG + chr1_1:59121033-59121052 None:intergenic 15.0%
!! AATTACTCACTAATAAATTT+AGG - chr1_1:59121074-59121093 Msa0032150:intron 15.0%
!! AATAAATTTATTGTCTCATT+TGG + chr1_1:59121137-59121156 None:intergenic 15.0%
!!! TTGTTTGAAAATATTTTACA+AGG + chr1_1:59121275-59121294 None:intergenic 15.0%
!!! TGTAAAATATTTTCAAACAA+TGG - chr1_1:59121275-59121294 Msa0032150:intron 15.0%
!!! AAGTTTTTCAAAAATTGAAA+AGG + chr1_1:59122071-59122090 None:intergenic 15.0%
!! CAAAAATTTCATATAACTAT+TGG + chr1_1:59123996-59124015 None:intergenic 15.0%
!! AAAAAATTAACTGTTTACAT+TGG - chr1_1:59124390-59124409 Msa0032150:intron 15.0%
!! AAGAAACTATTGAAAGTTTA+TGG - chr1_1:59121655-59121674 Msa0032150:CDS 20.0%
!! AAAGTTTATGGTAAGTAATT+TGG - chr1_1:59121667-59121686 Msa0032150:CDS 20.0%
!! TTGAATTTCTATGATTTCAT+AGG - chr1_1:59121707-59121726 Msa0032150:intron 20.0%
!!! TCGTGTTATAAAGTATTTAA+GGG - chr1_1:59121932-59121951 Msa0032150:CDS 20.0%
!!! ATAATTTTCAACTTGTGAAT+GGG - chr1_1:59121971-59121990 Msa0032150:CDS 20.0%
!! CTTATAATTTATTTATCGAG+AGG - chr1_1:59122173-59122192 Msa0032150:CDS 20.0%
!! AAACGAAAAAAACAACAAAT+GGG + chr1_1:59122220-59122239 None:intergenic 20.0%
!! TAAACGAAAAAAACAACAAA+TGG + chr1_1:59122221-59122240 None:intergenic 20.0%
!! TATCAACTTAAACATAAACA+TGG + chr1_1:59122255-59122274 None:intergenic 20.0%
!!! TTATTGTGGTTTTATGTTAA+TGG - chr1_1:59122393-59122412 Msa0032150:CDS 20.0%
!! ATTAAATGTATATTTGACCA+AGG + chr1_1:59122782-59122801 None:intergenic 20.0%
!! GTCAAATATACATTTAATCA+TGG - chr1_1:59122784-59122803 Msa0032150:intron 20.0%
!! AAGGATAAAAAAACTCAATA+TGG + chr1_1:59123933-59123952 None:intergenic 20.0%
!!! TTTTTATCCTTCAATTTGTT+AGG - chr1_1:59123942-59123961 Msa0032150:intron 20.0%
!!! TTTTATCCTTCAATTTGTTA+GGG - chr1_1:59123943-59123962 Msa0032150:intron 20.0%
!! ATTTATGCATATGAATTTCA+AGG + chr1_1:59125062-59125081 None:intergenic 20.0%
! CATTATATGCTATGTTACAT+AGG + chr1_1:59120974-59120993 None:intergenic 25.0%
!! TTTTGTTCACTGTCTTAAAA+CGG - chr1_1:59121177-59121196 Msa0032150:intron 25.0%
!! TTTTCAAACAATGGATATAG+CGG - chr1_1:59121284-59121303 Msa0032150:intron 25.0%
! TGACAACACTAATTAGAATA+TGG - chr1_1:59121336-59121355 Msa0032150:intron 25.0%
! ACTGTATGTACATATTATTG+AGG - chr1_1:59121546-59121565 Msa0032150:CDS 25.0%
!!! TTTCTGTCCTTTTTTAAGAA+AGG - chr1_1:59121632-59121651 Msa0032150:CDS 25.0%
! GTTTCTTCCTTTCTTAAAAA+AGG + chr1_1:59121642-59121661 None:intergenic 25.0%
!! CTCGTGTTATAAAGTATTTA+AGG - chr1_1:59121931-59121950 Msa0032150:CDS 25.0%
!! CGTGTTATAAAGTATTTAAG+GGG - chr1_1:59121933-59121952 Msa0032150:CDS 25.0%
!! CATAATTTTCAACTTGTGAA+TGG - chr1_1:59121970-59121989 Msa0032150:CDS 25.0%
! TATGCAACCATTAAGTATTT+GGG + chr1_1:59122003-59122022 None:intergenic 25.0%
!!! CATAATAGTGAAGTTTTATG+TGG - chr1_1:59122104-59122123 Msa0032150:CDS 25.0%
! TTATTTATCGAGAGGAAAAT+TGG - chr1_1:59122181-59122200 Msa0032150:CDS 25.0%
! TATTTATCGAGAGGAAAATT+GGG - chr1_1:59122182-59122201 Msa0032150:CDS 25.0%
! ACATAAAACCACAATAACAT+AGG + chr1_1:59122390-59122409 None:intergenic 25.0%
!! GTTTTATGTTAATGGTGTAT+AGG - chr1_1:59122401-59122420 Msa0032150:CDS 25.0%
!! TAAAGTATAAGCAGCAATTT+TGG + chr1_1:59122565-59122584 None:intergenic 25.0%
!! AAAATTGCTGCTTATACTTT+AGG - chr1_1:59122564-59122583 Msa0032150:CDS 25.0%
!!! CTTGAATTTTTTACCAAGAA+AGG + chr1_1:59122619-59122638 None:intergenic 25.0%
! CTTTCTTGGTAAAAAATTCA+AGG - chr1_1:59122617-59122636 Msa0032150:CDS 25.0%
! AGTGCATGTTAAATCAAAAT+CGG + chr1_1:59123058-59123077 None:intergenic 25.0%
! GAGAATCATCATACATTTAT+TGG + chr1_1:59123259-59123278 None:intergenic 25.0%
!!! TCATTTTCAATGTTAGTTTG+CGG - chr1_1:59123700-59123719 Msa0032150:intron 25.0%
! GTGTATAAAATAGCCTATTT+AGG - chr1_1:59123806-59123825 Msa0032150:intron 25.0%
!!! TGTGATGTTTTTTGAAGTTT+TGG - chr1_1:59123878-59123897 Msa0032150:intron 25.0%
!!! ATGTTTTTTGAAGTTTTGGT+TGG - chr1_1:59123882-59123901 Msa0032150:intron 25.0%
! TTATCAATTCCAGTAGATTA+TGG - chr1_1:59125129-59125148 Msa0032150:five_prime_UTR 25.0%
! TATCAATTCCAGTAGATTAT+GGG - chr1_1:59125130-59125149 Msa0032150:five_prime_UTR 25.0%
TTCGAAATGAGATTGAAGAA+CGG + chr1_1:59120052-59120071 None:intergenic 30.0%
GAAGCTAAAGAGATAACAAA+AGG + chr1_1:59120212-59120231 None:intergenic 30.0%
! TTTGTTATCTCTTTAGCTTC+CGG - chr1_1:59120212-59120231 Msa0032150:three_prime_UTR 30.0%
! CATTATCGCTAATCAAGTTT+TGG - chr1_1:59120349-59120368 Msa0032150:three_prime_UTR 30.0%
AAAATGGTGAATTACGCATA+CGG - chr1_1:59120685-59120704 Msa0032150:CDS 30.0%
AAAAAGTCGAAAACTAGAGT+TGG + chr1_1:59120789-59120808 None:intergenic 30.0%
AAATTGTTGTATTCTCGTAC+CGG - chr1_1:59120917-59120936 Msa0032150:intron 30.0%
TATGCTATGTTACATAGGTA+CGG + chr1_1:59120969-59120988 None:intergenic 30.0%
TGTCTTAAAACGGAGAAAAA+CGG - chr1_1:59121187-59121206 Msa0032150:intron 30.0%
TTAGAATATGGTTGTTGTCT+TGG - chr1_1:59121348-59121367 Msa0032150:intron 30.0%
! ATAATCAAACTCTCCAGTTT+TGG + chr1_1:59121518-59121537 None:intergenic 30.0%
AACTGGAGAGTTTGATTATT+TGG - chr1_1:59121519-59121538 Msa0032150:CDS 30.0%
! CATATTATTGAGGTGAGTTT+TGG - chr1_1:59121556-59121575 Msa0032150:CDS 30.0%
ATGATTTCATAGGTATGAGT+CGG - chr1_1:59121717-59121736 Msa0032150:intron 30.0%
! TAAAGTATTTAAGGGGAAGA+AGG - chr1_1:59121940-59121959 Msa0032150:CDS 30.0%
GTATGCAACCATTAAGTATT+TGG + chr1_1:59122004-59122023 None:intergenic 30.0%
TGGTTGCATACTAATAGTAA+AGG - chr1_1:59122013-59122032 Msa0032150:CDS 30.0%
!! ATAGTGAAGTTTTATGTGGT+TGG - chr1_1:59122108-59122127 Msa0032150:CDS 30.0%
ATGTTAATGGTGTATAGGAA+TGG - chr1_1:59122406-59122425 Msa0032150:CDS 30.0%
TGTTAATGGTGTATAGGAAT+GGG - chr1_1:59122407-59122426 Msa0032150:CDS 30.0%
TAAGTATACAGACTTTCTGT+TGG - chr1_1:59122473-59122492 Msa0032150:CDS 30.0%
!!! GCAATTTTGGTTTTCTCAAA+TGG + chr1_1:59122552-59122571 None:intergenic 30.0%
!! TTTGATACTATTTTGAGCCT+TGG - chr1_1:59122762-59122781 Msa0032150:intron 30.0%
ATAAGAATAACTGAGTAGCT+GGG + chr1_1:59122821-59122840 None:intergenic 30.0%
TATAAGAATAACTGAGTAGC+TGG + chr1_1:59122822-59122841 None:intergenic 30.0%
AAACTAAGTGTCTCTTTAAC+TGG - chr1_1:59122886-59122905 Msa0032150:intron 30.0%
!! CATTGAAAAGCTTTATTACC+AGG - chr1_1:59122924-59122943 Msa0032150:intron 30.0%
ATCATCATACATTTATTGGC+AGG + chr1_1:59123255-59123274 None:intergenic 30.0%
! AAAATAGCCTATTTAGGACT+TGG - chr1_1:59123812-59123831 Msa0032150:intron 30.0%
!!! TTGAAGTTTTGGTTGGAATA+AGG - chr1_1:59123889-59123908 Msa0032150:intron 30.0%
! TTTTAGCCTAGCATGAATTT+GGG + chr1_1:59124681-59124700 None:intergenic 30.0%
!! TTTTTAGCCTAGCATGAATT+TGG + chr1_1:59124682-59124701 None:intergenic 30.0%
! TTTCAAATGCTTGTTAGATC+AGG - chr1_1:59124934-59124953 Msa0032150:CDS 30.0%
! ACTGCTGTTCCATAATTTTA+AGG - chr1_1:59125001-59125020 Msa0032150:CDS 30.0%
CTGCTGAATCCTTAAAATTA+TGG + chr1_1:59125013-59125032 None:intergenic 30.0%
GAGTCAACTAAAAAATACAC+AGG + chr1_1:59125040-59125059 None:intergenic 30.0%
GCAGCTTCATTATAGATTAA+TGG - chr1_1:59125094-59125113 Msa0032150:five_prime_UTR 30.0%
AAAAAAGTCCCATAATCTAC+TGG + chr1_1:59125141-59125160 None:intergenic 30.0%
!! TGATTGGAAGGGTTTTGATA+GGG + chr1_1:59120028-59120047 None:intergenic 35.0%
!! ATGATTGGAAGGGTTTTGAT+AGG + chr1_1:59120029-59120048 None:intergenic 35.0%
TGGAACGATCTTGAATTGAA+AGG + chr1_1:59120083-59120102 None:intergenic 35.0%
! ACATAGAGAAGATGGATTCA+CGG + chr1_1:59120184-59120203 None:intergenic 35.0%
! AGAATCGATCTTCAAGTTAC+CGG + chr1_1:59120234-59120253 None:intergenic 35.0%
AAATAGCTGTTATAGCGTTG+CGG - chr1_1:59120462-59120481 Msa0032150:CDS 35.0%
CAAAATATCAAAGTGCGTCA+AGG - chr1_1:59120528-59120547 Msa0032150:CDS 35.0%
GAATACTGCGTTACAATTTG+CGG - chr1_1:59120573-59120592 Msa0032150:CDS 35.0%
ATCATATAATCTCCGAAGCA+TGG - chr1_1:59120654-59120673 Msa0032150:CDS 35.0%
TCATATAATCTCCGAAGCAT+GGG - chr1_1:59120655-59120674 Msa0032150:CDS 35.0%
! TTTTACAAGTACCCATGCTT+CGG + chr1_1:59120669-59120688 None:intergenic 35.0%
AAGCATGGGTACTTGTAAAA+TGG - chr1_1:59120669-59120688 Msa0032150:CDS 35.0%
ATGCTATGTTACATAGGTAC+GGG + chr1_1:59120968-59120987 None:intergenic 35.0%
AAAATCACAAGCAACAGGTA+GGG + chr1_1:59121160-59121179 None:intergenic 35.0%
AAAAATCACAAGCAACAGGT+AGG + chr1_1:59121161-59121180 None:intergenic 35.0%
GAACAAAAATCACAAGCAAC+AGG + chr1_1:59121165-59121184 None:intergenic 35.0%
AAAACGGAGAAAAACGGTAT+CGG - chr1_1:59121193-59121212 Msa0032150:intron 35.0%
AATATGGTTGTTGTCTTGGA+TGG - chr1_1:59121352-59121371 Msa0032150:intron 35.0%
! GTTTTCTCAGTAACCAAAAC+TGG - chr1_1:59121502-59121521 Msa0032150:CDS 35.0%
!! GTTGAGGAAGAATGTTTTAG+AGG - chr1_1:59121786-59121805 Msa0032150:intron 35.0%
!! TAAAGGTAAGGCATTTTTCC+CGG - chr1_1:59121833-59121852 Msa0032150:CDS 35.0%
AAAAAAACCTGCCCCAATTA+AGG + chr1_1:59121868-59121887 None:intergenic 35.0%
ATTGCCTTCTAAATGCTGAT+TGG - chr1_1:59122042-59122061 Msa0032150:CDS 35.0%
TATAAGTTCTTGTTCCCCAT+CGG + chr1_1:59122159-59122178 None:intergenic 35.0%
TCATACAGCCTATGTTATTG+TGG - chr1_1:59122379-59122398 Msa0032150:CDS 35.0%
GTTAATGGTGTATAGGAATG+GGG - chr1_1:59122408-59122427 Msa0032150:CDS 35.0%
TGAGTTAATACTGTGCTCTT+TGG + chr1_1:59122445-59122464 None:intergenic 35.0%
ATTGAAGGACTGAAAAGTTC+TGG - chr1_1:59122513-59122532 Msa0032150:CDS 35.0%
TAGTATCAAAGCAACCACAA+AGG + chr1_1:59122752-59122771 None:intergenic 35.0%
TAAGAATAACTGAGTAGCTG+GGG + chr1_1:59122820-59122839 None:intergenic 35.0%
! TAGTTTGTCGAGCAATTCTT+CGG + chr1_1:59122872-59122891 None:intergenic 35.0%
TATAGCAATTTCTGCCAAGA+TGG + chr1_1:59123097-59123116 None:intergenic 35.0%
ATTCGAGCTATTTGATCTTC+AGG + chr1_1:59123147-59123166 None:intergenic 35.0%
TCTATCCAAACAGTATACAG+AGG - chr1_1:59123200-59123219 Msa0032150:intron 35.0%
ATACTCCTCTGTATACTGTT+TGG + chr1_1:59123208-59123227 None:intergenic 35.0%
TCTCTGCATTCTTTCTACTA+TGG - chr1_1:59123275-59123294 Msa0032150:CDS 35.0%
TCGAGAACTCAGCAAATAAT+AGG - chr1_1:59123424-59123443 Msa0032150:intron 35.0%
CGAGAACTCAGCAAATAATA+GGG - chr1_1:59123425-59123444 Msa0032150:intron 35.0%
AATAATAGGGTTGTTGAGTC+AGG - chr1_1:59123438-59123457 Msa0032150:intron 35.0%
ATAATAGGGTTGTTGAGTCA+GGG - chr1_1:59123439-59123458 Msa0032150:intron 35.0%
GTATGAAAGAACATGCACAT+TGG + chr1_1:59123577-59123596 None:intergenic 35.0%
GAGAACTAAATCACATCTCA+TGG + chr1_1:59123654-59123673 None:intergenic 35.0%
CAACAATCCAAGTCCTAAAT+AGG + chr1_1:59123822-59123841 None:intergenic 35.0%
! CTATTTAGGACTTGGATTGT+TGG - chr1_1:59123820-59123839 Msa0032150:intron 35.0%
!! TCCTTCAATTTGTTAGGGAT+AGG - chr1_1:59123948-59123967 Msa0032150:intron 35.0%
TTAGTGTGATGCAAAGCAAT+TGG - chr1_1:59124016-59124035 Msa0032150:intron 35.0%
TAGTGTGATGCAAAGCAATT+GGG - chr1_1:59124017-59124036 Msa0032150:intron 35.0%
AAACACGAATGAAGAACTCA+TGG + chr1_1:59124068-59124087 None:intergenic 35.0%
CAAAGCAGGTAACTCAAAAA+GGG + chr1_1:59124097-59124116 None:intergenic 35.0%
TCAAAGCAGGTAACTCAAAA+AGG + chr1_1:59124098-59124117 None:intergenic 35.0%
TGTGATTCCTAGCATATCTT+GGG - chr1_1:59124125-59124144 Msa0032150:intron 35.0%
AAATCAGCTGGCCAAAAATT+AGG + chr1_1:59124231-59124250 None:intergenic 35.0%
TCCATCTCAATTAAATCAGC+TGG + chr1_1:59124243-59124262 None:intergenic 35.0%
CCAATATATTACGAAAAGCC+TGG + chr1_1:59124350-59124369 None:intergenic 35.0%
! CCAGGCTTTTCGTAATATAT+TGG - chr1_1:59124347-59124366 Msa0032150:intron 35.0%
AACTGTTTACATTGGAGACT+CGG - chr1_1:59124398-59124417 Msa0032150:intron 35.0%
! TCATTTGTCCCATTGTTTTC+TGG - chr1_1:59124513-59124532 Msa0032150:intron 35.0%
TAACCAAGCCAGAAAACAAT+GGG + chr1_1:59124524-59124543 None:intergenic 35.0%
TTAACCAAGCCAGAAAACAA+TGG + chr1_1:59124525-59124544 None:intergenic 35.0%
TTCTTTACACAGTCTCTAGT+TGG - chr1_1:59124601-59124620 Msa0032150:intron 35.0%
TCTTTACACAGTCTCTAGTT+GGG - chr1_1:59124602-59124621 Msa0032150:intron 35.0%
!! TGAAGTGCATGCTTTTGTTT+TGG - chr1_1:59124626-59124645 Msa0032150:intron 35.0%
!!! GAAGTGCATGCTTTTGTTTT+GGG - chr1_1:59124627-59124646 Msa0032150:intron 35.0%
TGCAATACAAATACACAAGC+AGG - chr1_1:59124721-59124740 Msa0032150:intron 35.0%
AATACAAATACACAAGCAGG+TGG - chr1_1:59124724-59124743 Msa0032150:intron 35.0%
! CAGGTGGCTAATTTTATAAG+CGG - chr1_1:59124740-59124759 Msa0032150:intron 35.0%
! GTCTCTCTTATTTCTCTTTC+AGG - chr1_1:59124779-59124798 Msa0032150:CDS 35.0%
AACCACTAGAGAAATCAGAA+TGG + chr1_1:59124829-59124848 None:intergenic 35.0%
! TGTCTGAAATTTCTCATTCC+TGG + chr1_1:59124908-59124927 None:intergenic 35.0%
! GTGTTGTACTGGTATTTAGT+AGG - chr1_1:59124976-59124995 Msa0032150:CDS 35.0%
AGATATGTGAAGTTTCAGAC+CGG - chr1_1:59125161-59125180 Msa0032150:five_prime_UTR 35.0%
TGAAGAACGGATGATTGGAA+GGG + chr1_1:59120039-59120058 None:intergenic 40.0%
TTGAAGAACGGATGATTGGA+AGG + chr1_1:59120040-59120059 None:intergenic 40.0%
GAGATTGAAGAACGGATGAT+TGG + chr1_1:59120044-59120063 None:intergenic 40.0%
! CCATTTGGATTCGGTTTCTA+TGG + chr1_1:59120103-59120122 None:intergenic 40.0%
CCATAGAAACCGAATCCAAA+TGG - chr1_1:59120100-59120119 Msa0032150:three_prime_UTR 40.0%
! GAATTGCTGCCATTTGGATT+CGG + chr1_1:59120112-59120131 None:intergenic 40.0%
GATTGTGAATTGCTGCCATT+TGG + chr1_1:59120118-59120137 None:intergenic 40.0%
ATTCACAATCACAGTGAAGC+TGG - chr1_1:59120128-59120147 Msa0032150:three_prime_UTR 40.0%
! AGGAGTGTACATAGAGAAGA+TGG + chr1_1:59120192-59120211 None:intergenic 40.0%
GAACATCTTGAGCGATGTAA+TGG + chr1_1:59120262-59120281 None:intergenic 40.0%
! CGTCAAGGATTTTGCGATTT+CGG - chr1_1:59120543-59120562 Msa0032150:CDS 40.0%
! CACAACAAAAGGGTATAGGT+AGG + chr1_1:59121219-59121238 None:intergenic 40.0%
! CTACCTATACCCTTTTGTTG+TGG - chr1_1:59121217-59121236 Msa0032150:intron 40.0%
CAAAATCGGCCACAACAAAA+GGG + chr1_1:59121229-59121248 None:intergenic 40.0%
ACAGTCCGTTACTGCAAAAT+CGG + chr1_1:59121243-59121262 None:intergenic 40.0%
AGTAAGTGCAACTGAACTTG+TGG - chr1_1:59121400-59121419 Msa0032150:intron 40.0%
AAAAGTAGTGCAAGGGAGAT+GGG + chr1_1:59121614-59121633 None:intergenic 40.0%
AAAAAGTAGTGCAAGGGAGA+TGG + chr1_1:59121615-59121634 None:intergenic 40.0%
GGACAGAAAAAGTAGTGCAA+GGG + chr1_1:59121621-59121640 None:intergenic 40.0%
AGGACAGAAAAAGTAGTGCA+AGG + chr1_1:59121622-59121641 None:intergenic 40.0%
ATGACTCACTGGTAAAGGTA+AGG - chr1_1:59121821-59121840 Msa0032150:CDS 40.0%
TTTCAACTTGTGAATGGGAC+TGG - chr1_1:59121976-59121995 Msa0032150:CDS 40.0%
! GACTGGTCCCAAATACTTAA+TGG - chr1_1:59121993-59122012 Msa0032150:CDS 40.0%
GAGTCCAATCAGCATTTAGA+AGG + chr1_1:59122049-59122068 None:intergenic 40.0%
CATAGGCTGTATGAGTGAAA+AGG + chr1_1:59122373-59122392 None:intergenic 40.0%
TAATACTGTGCTCTTTGGCA+AGG + chr1_1:59122440-59122459 None:intergenic 40.0%
TTGTCGATCCACTTGCAATA+CGG + chr1_1:59122672-59122691 None:intergenic 40.0%
ATCGACAACTATTCCTCTGA+TGG - chr1_1:59122684-59122703 Msa0032150:intron 40.0%
TACTGTCAACATGACAAACC+TGG + chr1_1:59122713-59122732 None:intergenic 40.0%
AGGTTTGTCATGTTGACAGT+AGG - chr1_1:59122712-59122731 Msa0032150:intron 40.0%
GGTTTGTCATGTTGACAGTA+GGG - chr1_1:59122713-59122732 Msa0032150:intron 40.0%
ACCACAAAGGCTATATGGTA+TGG + chr1_1:59122739-59122758 None:intergenic 40.0%
AAGCAACCACAAAGGCTATA+TGG + chr1_1:59122744-59122763 None:intergenic 40.0%
CTATTTCAAGCTTCATTGCC+TGG + chr1_1:59122945-59122964 None:intergenic 40.0%
!! TTAGTCAAGGGTGCTATAGT+TGG + chr1_1:59122997-59123016 None:intergenic 40.0%
ACTATAGCACCCTTGACTAA+AGG - chr1_1:59122997-59123016 Msa0032150:intron 40.0%
GGGTTATGTCCTTTAGTCAA+GGG + chr1_1:59123009-59123028 None:intergenic 40.0%
AGGGTTATGTCCTTTAGTCA+AGG + chr1_1:59123010-59123029 None:intergenic 40.0%
!! TGTTGATTCATCTGCCATCT+TGG - chr1_1:59123080-59123099 Msa0032150:intron 40.0%
TTGATCTTCAGGCTGATTGT+CGG + chr1_1:59123136-59123155 None:intergenic 40.0%
TTTCCACTGCAAATCACACA+AGG + chr1_1:59123356-59123375 None:intergenic 40.0%
TAATAGGGTTGTTGAGTCAG+GGG - chr1_1:59123440-59123459 Msa0032150:intron 40.0%
TGCATGTTCTTTCATACTGC+TGG - chr1_1:59123580-59123599 Msa0032150:intron 40.0%
AAGAGAAAGCAGACCTAATG+AGG + chr1_1:59123614-59123633 None:intergenic 40.0%
ATTAGGTCTGCTTTCTCTTC+AGG - chr1_1:59123615-59123634 Msa0032150:intron 40.0%
TTTATACACCCACCAAGACT+AGG + chr1_1:59123795-59123814 None:intergenic 40.0%
ACATGAGTCTCCTTTCATCT+CGG - chr1_1:59123846-59123865 Msa0032150:intron 40.0%
GCCTATCCCTAACAAATTGA+AGG + chr1_1:59123952-59123971 None:intergenic 40.0%
AGTGTGATGCAAAGCAATTG+GGG - chr1_1:59124018-59124037 Msa0032150:intron 40.0%
ATCACAGATATGCTCAAAGC+AGG + chr1_1:59124111-59124130 None:intergenic 40.0%
CTGTGATTCCTAGCATATCT+TGG - chr1_1:59124124-59124143 Msa0032150:intron 40.0%
ATTCCTAGCATATCTTGGGT+TGG - chr1_1:59124129-59124148 Msa0032150:intron 40.0%
TCGGTTTAACAGCGAAGATT+TGG + chr1_1:59124155-59124174 None:intergenic 40.0%
GCTGTTAAACCGATTGAAGT+TGG - chr1_1:59124162-59124181 Msa0032150:intron 40.0%
TATCAGCTGCCAACTTCAAT+CGG + chr1_1:59124174-59124193 None:intergenic 40.0%
! GCCAGCTGATTTAATTGAGA+TGG - chr1_1:59124239-59124258 Msa0032150:intron 40.0%
GCTAACGAGTTCAGTTATGA+CGG - chr1_1:59124270-59124289 Msa0032150:intron 40.0%
!! TATGACGGATCTGTTTCTAC+CGG - chr1_1:59124285-59124304 Msa0032150:intron 40.0%
TACCGGTGACATTGTTAAGA+AGG - chr1_1:59124302-59124321 Msa0032150:intron 40.0%
CACCTTCTTAACAATGTCAC+CGG + chr1_1:59124307-59124326 None:intergenic 40.0%
TGTCTACTTGAAGCAGATGT+AGG - chr1_1:59124435-59124454 Msa0032150:intron 40.0%
GCAGATGTAGGAATTGTGAT+TGG - chr1_1:59124447-59124466 Msa0032150:intron 40.0%
! TTGGTTCAAGTTCAAGCCTT+AGG - chr1_1:59124466-59124485 Msa0032150:intron 40.0%
AACACCAAATTGTGTCCCTA+TGG + chr1_1:59124493-59124512 None:intergenic 40.0%
ACGAAGAAAGCTCTTCCAAT+TGG - chr1_1:59124562-59124581 Msa0032150:intron 40.0%
AGAAAGCTCTTCCAATTGGA+AGG - chr1_1:59124566-59124585 Msa0032150:intron 40.0%
GAAAGCTCTTCCAATTGGAA+GGG - chr1_1:59124567-59124586 Msa0032150:intron 40.0%
TCCAATTGGAAGGGTTTATC+TGG - chr1_1:59124576-59124595 Msa0032150:intron 40.0%
AGAGAAATAAGAGAGACAGC+AGG + chr1_1:59124776-59124795 None:intergenic 40.0%
GATGTTGCAATTCAGAGACA+TGG - chr1_1:59124801-59124820 Msa0032150:CDS 40.0%
TGCCATTCTGATTTCTCTAG+TGG - chr1_1:59124824-59124843 Msa0032150:CDS 40.0%
TTTCTCATTCCTGGCATGAT+TGG + chr1_1:59124899-59124918 None:intergenic 40.0%
!! CAGACTTTGAAGTGTTGTAC+TGG - chr1_1:59124965-59124984 Msa0032150:CDS 40.0%
CATCGAGTGGATGAAACACA+CGG + chr1_1:59119982-59120001 None:intergenic 45.0%
!! GGGTTTTGATAGGGTTTGGA+AGG + chr1_1:59120019-59120038 None:intergenic 45.0%
!! GGAAGGGTTTTGATAGGGTT+TGG + chr1_1:59120023-59120042 None:intergenic 45.0%
CATCTTGAGCGATGTAATGG+CGG + chr1_1:59120259-59120278 None:intergenic 45.0%
TACAGTACCCGGTACAATAC+GGG + chr1_1:59120945-59120964 None:intergenic 45.0%
GTACAGTACCCGGTACAATA+CGG + chr1_1:59120946-59120965 None:intergenic 45.0%
GCAAAATCGGCCACAACAAA+AGG + chr1_1:59121230-59121249 None:intergenic 45.0%
!! TGTGGCCGATTTTGCAGTAA+CGG - chr1_1:59121235-59121254 Msa0032150:intron 45.0%
ATGGTTGTTGTCTTGGATGG+TGG - chr1_1:59121355-59121374 Msa0032150:intron 45.0%
GATGACGATGACGATAAGCT+TGG - chr1_1:59121754-59121773 Msa0032150:intron 45.0%
GATGCATGACTCACTGGTAA+AGG - chr1_1:59121816-59121835 Msa0032150:intron 45.0%
! AGGCATTTTTCCCGGTAACA+TGG - chr1_1:59121841-59121860 Msa0032150:CDS 45.0%
! GGCATTTTTCCCGGTAACAT+GGG - chr1_1:59121842-59121861 Msa0032150:CDS 45.0%
CAATTAAGGCCCATGTTACC+GGG + chr1_1:59121854-59121873 None:intergenic 45.0%
CCAATTAAGGCCCATGTTAC+CGG + chr1_1:59121855-59121874 None:intergenic 45.0%
CGGTAACATGGGCCTTAATT+GGG - chr1_1:59121853-59121872 Msa0032150:CDS 45.0%
GGTAACATGGGCCTTAATTG+GGG - chr1_1:59121854-59121873 Msa0032150:CDS 45.0%
TGGTGTATAGGAATGGGGAT+TGG - chr1_1:59122413-59122432 Msa0032150:CDS 45.0%
! TTTCTGTTGGCTACTGCTTC+TGG - chr1_1:59122486-59122505 Msa0032150:CDS 45.0%
! TTCTGTTGGCTACTGCTTCT+GGG - chr1_1:59122487-59122506 Msa0032150:CDS 45.0%
! ACTGCTTCTGGGAAGATTGA+AGG - chr1_1:59122498-59122517 Msa0032150:CDS 45.0%
ATGAGGCTGTATGCCTTTCT+TGG - chr1_1:59122603-59122622 Msa0032150:CDS 45.0%
TGAGTACTTTCTTCGAGGTC+TGG + chr1_1:59122648-59122667 None:intergenic 45.0%
TGTCGATCCACTTGCAATAC+GGG + chr1_1:59122671-59122690 None:intergenic 45.0%
CTATTCCTCTGATGGTTTCC+AGG - chr1_1:59122692-59122711 Msa0032150:intron 45.0%
ACAAACCTGGAAACCATCAG+AGG + chr1_1:59122700-59122719 None:intergenic 45.0%
GCCATACCATATAGCCTTTG+TGG - chr1_1:59122735-59122754 Msa0032150:intron 45.0%
GCTATAGTTGGCTGAAAGAG+TGG + chr1_1:59122985-59123004 None:intergenic 45.0%
TCACGAGACGATCTTCTTCA+GGG + chr1_1:59123029-59123048 None:intergenic 45.0%
ATCACGAGACGATCTTCTTC+AGG + chr1_1:59123030-59123049 None:intergenic 45.0%
! TCAGGCTGATTGTCGGATTT+TGG + chr1_1:59123129-59123148 None:intergenic 45.0%
GAATGTTGTCTTCTGACCTC+AGG - chr1_1:59123163-59123182 Msa0032150:intron 45.0%
TTCTGACCTCAGGAACACAT+GGG - chr1_1:59123173-59123192 Msa0032150:intron 45.0%
! TGACCTTGTGTGATTTGCAG+TGG - chr1_1:59123350-59123369 Msa0032150:intron 45.0%
TGTTGAGTCAGGGGTTCTTA+AGG - chr1_1:59123449-59123468 Msa0032150:intron 45.0%
GTTGAGTCAGGGGTTCTTAA+GGG - chr1_1:59123450-59123469 Msa0032150:intron 45.0%
ATAGAAGATGTAAAGCGCGC+TGG - chr1_1:59123480-59123499 Msa0032150:intron 45.0%
!! TGGAGAGCGTTTGATTCTTC+AGG - chr1_1:59123500-59123519 Msa0032150:intron 45.0%
GAGCGTTTGATTCTTCAGGA+TGG - chr1_1:59123504-59123523 Msa0032150:intron 45.0%
GTTCTTTCATACTGCTGGTG+TGG - chr1_1:59123585-59123604 Msa0032150:intron 45.0%
ATTGTGTCCATTTCGCACTC+TGG - chr1_1:59123755-59123774 Msa0032150:intron 45.0%
TTGTGTCCATTTCGCACTCT+GGG - chr1_1:59123756-59123775 Msa0032150:intron 45.0%
CACGAATGAAGAACTCATGG+TGG + chr1_1:59124065-59124084 None:intergenic 45.0%
CGGTGACATTGTTAAGAAGG+TGG - chr1_1:59124305-59124324 Msa0032150:intron 45.0%
AAAGCCTGGACCTTGTCAAT+GGG + chr1_1:59124336-59124355 None:intergenic 45.0%
AAAAGCCTGGACCTTGTCAA+TGG + chr1_1:59124337-59124356 None:intergenic 45.0%
TGTTTACATTGGAGACTCGG+TGG - chr1_1:59124401-59124420 Msa0032150:intron 45.0%
! GTTTACATTGGAGACTCGGT+GGG - chr1_1:59124402-59124421 Msa0032150:intron 45.0%
AGTTCAAGCCTTAGGACCAT+AGG - chr1_1:59124474-59124493 Msa0032150:intron 45.0%
GTTCAAGCCTTAGGACCATA+GGG - chr1_1:59124475-59124494 Msa0032150:intron 45.0%
ATTGTGTCCCTATGGTCCTA+AGG + chr1_1:59124485-59124504 None:intergenic 45.0%
AGGACCATAGGGACACAATT+TGG - chr1_1:59124486-59124505 Msa0032150:intron 45.0%
!!! TGTCCCATTGTTTTCTGGCT+TGG - chr1_1:59124518-59124537 Msa0032150:intron 45.0%
GCCAGATAAACCCTTCCAAT+TGG + chr1_1:59124580-59124599 None:intergenic 45.0%
! TAGTGGTTCTTCGAAGCATC+TGG - chr1_1:59124841-59124860 Msa0032150:CDS 45.0%
ACATACGTAAGTCACTCAGC+CGG + chr1_1:59125183-59125202 None:intergenic 45.0%
TCATCCACTCGATGCGCATA+CGG - chr1_1:59119988-59120007 Msa0032150:three_prime_UTR 50.0%
TACCGGTACCCGTATTGTAC+CGG - chr1_1:59120934-59120953 Msa0032150:intron 50.0%
ATAGGTACGGGTACAGTACC+CGG + chr1_1:59120956-59120975 None:intergenic 50.0%
! CGGCCACAACAAAAGGGTAT+AGG + chr1_1:59121223-59121242 None:intergenic 50.0%
AATGGATATAGCGGCGCCAT+AGG - chr1_1:59121293-59121312 Msa0032150:intron 50.0%
ATTCCGCTACGCAACACCTA+TGG + chr1_1:59121312-59121331 None:intergenic 50.0%
AGCTTGGACTCTCTCAGTTG+AGG - chr1_1:59121770-59121789 Msa0032150:intron 50.0%
GCTGAAGATGCATGACTCAC+TGG - chr1_1:59121810-59121829 Msa0032150:intron 50.0%
CCGGTAACATGGGCCTTAAT+TGG - chr1_1:59121852-59121871 Msa0032150:CDS 50.0%
TGGTTGGAGTATGACCCTGA+GGG - chr1_1:59122124-59122143 Msa0032150:CDS 50.0%
ATCGGAAAGGATGTCCCTCA+GGG + chr1_1:59122141-59122160 None:intergenic 50.0%
TGAGGGACATCCTTTCCGAT+GGG - chr1_1:59122141-59122160 Msa0032150:CDS 50.0%
GTTCTTGTTCCCCATCGGAA+AGG + chr1_1:59122154-59122173 None:intergenic 50.0%
AAGGCATACAGCCTCATGCA+AGG + chr1_1:59122600-59122619 None:intergenic 50.0%
ACGGGTGAGTACTTTCTTCG+AGG + chr1_1:59122653-59122672 None:intergenic 50.0%
GTACTCACCCGTATTGCAAG+TGG - chr1_1:59122661-59122680 Msa0032150:intron 50.0%
CTTCTGACCTCAGGAACACA+TGG - chr1_1:59123172-59123191 Msa0032150:intron 50.0%
TCTGACCTCAGGAACACATG+GGG - chr1_1:59123174-59123193 Msa0032150:intron 50.0%
GACAGGAGTCATCCTAGTCT+TGG - chr1_1:59123780-59123799 Msa0032150:intron 50.0%
!! AGGAGTCATCCTAGTCTTGG+TGG - chr1_1:59123783-59123802 Msa0032150:intron 50.0%
!! GGAGTCATCCTAGTCTTGGT+GGG - chr1_1:59123784-59123803 Msa0032150:intron 50.0%
TGGCCAACCCAAGATATGCT+AGG + chr1_1:59124135-59124154 None:intergenic 50.0%
CATGCGCCCAAATTCATGCT+AGG - chr1_1:59124672-59124691 Msa0032150:intron 50.0%
CTCATTCCTGGCATGATTGG+AGG + chr1_1:59124896-59124915 None:intergenic 50.0%
GGTGCAACTGCTTCGCTTGT+GGG + chr1_1:59119878-59119897 None:intergenic 55.0%
TGGTGCAACTGCTTCGCTTG+TGG + chr1_1:59119879-59119898 None:intergenic 55.0%
CGAGTGGATGAAACACACGG+CGG + chr1_1:59119979-59119998 None:intergenic 55.0%
! CTGGACTTGCGAAGCGTTTC+TGG - chr1_1:59120147-59120166 Msa0032150:three_prime_UTR 55.0%
ACCGGTACCCGTATTGTACC+GGG - chr1_1:59120935-59120954 Msa0032150:intron 55.0%
ACCCGGTACAATACGGGTAC+CGG + chr1_1:59120939-59120958 None:intergenic 55.0%
GGAGATGGGTAGGTCTTGCA+CGG + chr1_1:59121600-59121619 None:intergenic 55.0%
GTAGTGCAAGGGAGATGGGT+AGG + chr1_1:59121610-59121629 None:intergenic 55.0%
ACATGGGCCTTAATTGGGGC+AGG - chr1_1:59121858-59121877 Msa0032150:CDS 55.0%
GTGGTTGGAGTATGACCCTG+AGG - chr1_1:59122123-59122142 Msa0032150:CDS 55.0%
CATCGGAAAGGATGTCCCTC+AGG + chr1_1:59122142-59122161 None:intergenic 55.0%
CTGAGGGACATCCTTTCCGA+TGG - chr1_1:59122140-59122159 Msa0032150:CDS 55.0%
GAGGGACATCCTTTCCGATG+GGG - chr1_1:59122142-59122161 Msa0032150:CDS 55.0%
GTGCCATGACTCCTTGCATG+AGG - chr1_1:59122586-59122605 Msa0032150:CDS 55.0%
CAGCCTCATGCAAGGAGTCA+TGG + chr1_1:59122592-59122611 None:intergenic 55.0%
GAGAACCCCATGTGTTCCTG+AGG + chr1_1:59123182-59123201 None:intergenic 55.0%
GCTGGTGTGGTGACCTCATT+AGG - chr1_1:59123598-59123617 Msa0032150:intron 55.0%
CTGTCTCCCAGAGTGCGAAA+TGG + chr1_1:59123765-59123784 None:intergenic 55.0%
! CATTTCGCACTCTGGGAGAC+AGG - chr1_1:59123763-59123782 Msa0032150:intron 55.0%
GGTGGAGTCTCCCATTGACA+AGG - chr1_1:59124323-59124342 Msa0032150:intron 55.0%
GTCTCCCATTGACAAGGTCC+AGG - chr1_1:59124329-59124348 Msa0032150:intron 55.0%
GAGAGACAGCAGGCAATCTG+TGG + chr1_1:59124766-59124785 None:intergenic 55.0%
CTGTCTCCTCCAATCATGCC+AGG - chr1_1:59124887-59124906 Msa0032150:CDS 55.0%
GAAGCAGTTGCACCAGCAGC+AGG - chr1_1:59119884-59119903 Msa0032150:three_prime_UTR 60.0%
TCCACTCGATGCGCATACGG+TGG - chr1_1:59119991-59120010 Msa0032150:three_prime_UTR 60.0%
ACCACCGTATGCGCATCGAG+TGG + chr1_1:59119995-59120014 None:intergenic 60.0%
! GCGCCATAGGTGTTGCGTAG+CGG - chr1_1:59121306-59121325 Msa0032150:intron 60.0%
GCAGTTGCACCAGCAGCAGG+AGG - chr1_1:59119887-59119906 Msa0032150:three_prime_UTR 65.0%
AGACGAGTGCCTCCTGCTGC+TGG + chr1_1:59119899-59119918 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 59119871 59125214 59119871 ID=Msa0032150;Name=Msa0032150
chr1_1 mRNA 59119871 59125214 59119871 ID=Msa0032150-mRNA-1;Parent=Msa0032150;Name=Msa0032150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=128|1|1|1|1|1|6|558|599
chr1_1 exon 59119871 59120841 59119871 ID=Msa0032150-mRNA-1:exon:18201;Parent=Msa0032150-mRNA-1
chr1_1 exon 59121449 59121715 59121449 ID=Msa0032150-mRNA-1:exon:18200;Parent=Msa0032150-mRNA-1
chr1_1 exon 59121821 59122232 59121821 ID=Msa0032150-mRNA-1:exon:18199;Parent=Msa0032150-mRNA-1
chr1_1 exon 59122372 59122662 59122372 ID=Msa0032150-mRNA-1:exon:18198;Parent=Msa0032150-mRNA-1
chr1_1 exon 59123248 59123356 59123248 ID=Msa0032150-mRNA-1:exon:18197;Parent=Msa0032150-mRNA-1
chr1_1 exon 59124779 59125214 59124779 ID=Msa0032150-mRNA-1:exon:18196;Parent=Msa0032150-mRNA-1
chr1_1 five_prime_UTR 59125087 59125214 59125087 ID=Msa0032150-mRNA-1:five_prime_utr;Parent=Msa0032150-mRNA-1
chr1_1 CDS 59124779 59125086 59124779 ID=Msa0032150-mRNA-1:cds;Parent=Msa0032150-mRNA-1
chr1_1 CDS 59123248 59123356 59123248 ID=Msa0032150-mRNA-1:cds;Parent=Msa0032150-mRNA-1
chr1_1 CDS 59122372 59122662 59122372 ID=Msa0032150-mRNA-1:cds;Parent=Msa0032150-mRNA-1
chr1_1 CDS 59121821 59122232 59121821 ID=Msa0032150-mRNA-1:cds;Parent=Msa0032150-mRNA-1
chr1_1 CDS 59121449 59121715 59121449 ID=Msa0032150-mRNA-1:cds;Parent=Msa0032150-mRNA-1
chr1_1 CDS 59120429 59120841 59120429 ID=Msa0032150-mRNA-1:cds;Parent=Msa0032150-mRNA-1
chr1_1 three_prime_UTR 59119871 59120428 59119871 ID=Msa0032150-mRNA-1:three_prime_utr;Parent=Msa0032150-mRNA-1
Gene Sequence

>Msa0032150

ATGCGCATACGGTGGTTCCTTCCAAACCCTATCAAAACCCTTCCAATCATCCGTTCTTCAATCTCATTTCGAAACTTCGTTCCTTTCAATTCAAGATCGTTCCATAGAAACCGAATCCAAATGGCAGCAATTCACAATCACAGTGAAGCTGGACTTGCGAAGCGTTTCTGGATCAAGTTCAACCGTGAATCCATCTTCTCTATGTACACTCCTTTTGTTATCTCTTTAGCTTCCGGTAACTTGAAGATCGATTCTTTCCGCCATTACATCGCTCAAGATGTTCATTTTCTTCGCGCTTTTGTTCAAGCGTATGAGTCGGCAGAAGACTGTGCTGATGACGATGACGATAAGCTTGGACTCTCTCAGTTGAGGAAGAATGTTTTAGAGGAGCTGAAGATGCATGACTCACTGGTAAAGGAATGGGGATTGGACCTTGCCAAAGAGCACAGTATTAACTCAGCAACAGTTAAGTATACAGACTTTCTGTTGGCTACTGCTTCTGGGAAGATTGAAGGACTGAAAAGTTCTGGTAAACTTGCAACACCATTTGAGAAAACCAAAATTGCTGCTTATACTTTAGGTGCCATGACTCCTTGCATGAGGCTGTATGCCTTTCTTGGTAAAAAATTCAAGGAACTTCCAGACCTCGAAGAAAGTACTCACCCGTATTGCAAGTGGATCGACAACTATTCCTCTGATGGTTTCCAGGCTTCTGCTCTGCAAACCGAAGAATTGCTCGACAAACTAAGTGTCTCTTTAACTGGCGAAGAACTCGATGTCATTGAAAAGCTTTATTACCAGGCAATGAAGCTTGAAATAGACTTCTTCAATGCTCAACCACTCTTTCAGCCAACTATAGCACCCTTGACTAAAGGACATAACCCTGAAGAAGATCGTCTCGTGATTTTTTCCGATTTTGATTTAACATGCACTGTTGTTGATTCATCTGCCATCTTGGCAGAAATTGCTATAGTGACAGCACCAAAATCCGACAATCAGCCTGAAGATCAAATAGCTCGAATGTTGTCTTCTGACCTCAGGAACACATGGGGTTCTCTATCCAAACAGTATACAGAGGAGTATGAGCAATGTATAGAAAGCATTATGCCTGCCAATAAATTGGAAAATTTTGATTATAAAGAACTGTCTACAGCACTTGAGCAACTTTCAAAATTCGAGAACTCAGCAAATAATAGGGTTGTTGAGTCAGGGGTTCTTAAGGGTATAAATATAGAAGATGTAAAGCGCGCTGGAGAGCGTTTGATTCTTCAGGATGGTTGCACTGACTTTTTTAAGAGAGTTGTAAAGAATAAAAATTTGAATGCCAATGTGCATGTTCTTTCATACTGCTGGTGTGGTGACCTCATTAGGTCTGCTTTCTCTTCAGCTGATTTAATTGAGATGGATGTTCATGCTAACGAGTTCAGTTATGACGGATCTGTTTCTACCGGTGACATTGTTAAGAAGGTGGAGTCTCCCATTGACAAGGTCCAGGCTTTTCGTAATATATTGGAAAATTGCAACGATGACAAGAAAAAATTAACTGTTTACATTGGAGACTCGGTGGGTGATTTACTTTGTCTACTTGAAGCAGATGTAGGAATTGTGATTGGTTCAAGTTCAAGCCTTAGGACCATAGGGACACAATTTGGTGTTTCATTTGTCCCATTGTTTTCTGGCTTGGTTAAGAAACAGAAAGAATACAACGAAGAAAGCTCTTCCAATTGGAAGGGTTTATCTGGCATTCTTTACACAGTCTCTAGTTGGGCTGAAGTGCATGCTTTTGTTTTGGGTTGCTAG

Protein sequence

>Msa0032150

MRIRWFLPNPIKTLPIIRSSISFRNFVPFNSRSFHRNRIQMAAIHNHSEAGLAKRFWIKFNRESIFSMYTPFVISLASGNLKIDSFRHYIAQDVHFLRAFVQAYESAEDCADDDDDKLGLSQLRKNVLEELKMHDSLVKEWGLDLAKEHSINSATVKYTDFLLATASGKIEGLKSSGKLATPFEKTKIAAYTLGAMTPCMRLYAFLGKKFKELPDLEESTHPYCKWIDNYSSDGFQASALQTEELLDKLSVSLTGEELDVIEKLYYQAMKLEIDFFNAQPLFQPTIAPLTKGHNPEEDRLVIFSDFDLTCTVVDSSAILAEIAIVTAPKSDNQPEDQIARMLSSDLRNTWGSLSKQYTEEYEQCIESIMPANKLENFDYKELSTALEQLSKFENSANNRVVESGVLKGINIEDVKRAGERLILQDGCTDFFKRVVKNKNLNANVHVLSYCWCGDLIRSAFSSADLIEMDVHANEFSYDGSVSTGDIVKKVESPIDKVQAFRNILENCNDDKKKLTVYIGDSVGDLLCLLEADVGIVIGSSSSLRTIGTQFGVSFVPLFSGLVKKQKEYNEESSSNWKGLSGILYTVSSWAEVHAFVLGC*