AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221250 MtrunA17_Chr4g0072561 98.373 553 9 0 1 553 1 553 0.0 1116
Msa1221250 MtrunA17_Chr4g0000461 66.298 543 175 5 10 548 4 542 0.0 731
Msa1221250 MtrunA17_Chr5g0395431 61.090 532 200 3 17 544 55 583 0.0 691
Msa1221250 MtrunA17_Chr2g0334131 70.922 282 80 2 269 548 3 284 1.22e-143 416
Msa1221250 MtrunA17_Chr4g0028411 41.996 531 300 5 17 543 11 537 9.76e-143 423
Msa1221250 MtrunA17_Chr2g0327341 41.588 529 296 7 17 540 11 531 4.75e-138 410
Msa1221250 MtrunA17_Chr3g0102411 38.333 540 319 6 12 546 9 539 1.15e-132 397
Msa1221250 MtrunA17_Chr1g0180551 43.068 541 281 12 18 540 82 613 8.51e-126 382
Msa1221250 MtrunA17_Chr1g0180541 41.098 528 296 9 25 542 20 542 8.32e-125 377
Msa1221250 MtrunA17_Chr1g0157401 39.024 533 310 6 17 540 26 552 1.54e-124 377
Msa1221250 MtrunA17_Chr1g0197391 39.179 536 301 9 26 549 45 567 3.49e-117 358
Msa1221250 MtrunA17_Chr5g0409771 37.291 539 324 10 8 540 17 547 3.21e-113 347
Msa1221250 MtrunA17_Chr8g0353341 38.086 512 292 7 17 511 23 526 2.28e-110 339
Msa1221250 MtrunA17_Chr4g0039791 39.630 487 282 9 68 548 81 561 5.23e-110 339
Msa1221250 MtrunA17_Chr5g0409791 38.247 502 278 11 68 548 78 568 2.27e-106 330
Msa1221250 MtrunA17_Chr3g0116271 37.205 508 287 9 45 540 63 550 1.67e-101 317
Msa1221250 MtrunA17_Chr3g0116251 36.238 505 293 8 45 540 64 548 6.74e-98 308
Msa1221250 MtrunA17_Chr1g0186071 37.160 514 302 9 35 544 56 552 1.37e-94 299
Msa1221250 MtrunA17_Chr2g0334121 58.128 203 81 3 10 208 5 207 1.73e-78 246
Msa1221250 MtrunA17_Chr6g0471921 31.288 489 312 14 59 538 32 505 1.60e-56 197
Msa1221250 MtrunA17_Chr5g0433241 29.167 528 319 18 44 535 27 535 2.61e-50 182
Msa1221250 MtrunA17_Chr3g0109731 26.753 542 340 14 42 543 25 549 1.84e-44 166
Msa1221250 MtrunA17_Chr1g0157431 30.211 331 218 5 17 338 26 352 4.59e-44 164
Msa1221250 MtrunA17_Chr5g0433231 28.358 536 324 17 44 540 27 541 3.14e-43 162
Msa1221250 MtrunA17_Chr5g0396311 27.695 538 334 19 30 534 11 526 1.41e-38 149
Msa1221250 MtrunA17_Chr2g0301671 27.881 538 336 17 46 546 35 557 9.27e-38 146
Msa1221250 MtrunA17_Chr5g0433221 27.273 539 326 19 44 540 27 541 1.15e-37 146
Msa1221250 MtrunA17_Chr5g0396331 25.683 549 347 19 30 543 11 533 2.05e-37 145
Msa1221250 MtrunA17_Chr4g0068151 26.816 537 341 17 47 546 36 557 2.20e-35 140
Msa1221250 MtrunA17_Chr4g0028451 56.075 107 38 1 406 512 10 107 6.08e-34 124
Msa1221250 MtrunA17_Chr6g0471311 29.781 366 229 13 191 540 190 543 7.27e-34 135
Msa1221250 MtrunA17_Chr7g0252691 24.427 524 346 15 58 540 205 719 1.23e-32 133
Msa1221250 MtrunA17_Chr8g0370701 24.038 520 346 15 46 535 71 571 1.04e-30 126
Msa1221250 MtrunA17_Chr2g0292471 25.660 530 320 19 68 540 37 549 2.81e-30 125
Msa1221250 MtrunA17_Chr5g0406681 22.478 565 391 16 1 535 9 556 4.55e-28 118
Msa1221250 MtrunA17_Chr1g0205711 23.221 534 319 19 8 465 50 568 9.30e-27 115
Msa1221250 MtrunA17_Chr8g0370731 26.098 410 269 12 148 537 89 484 1.07e-26 114
Msa1221250 MtrunA17_Chr7g0270221 26.047 549 294 19 50 527 66 573 1.95e-25 110
Msa1221250 MtrunA17_Chr1g0194371 25.490 561 292 22 50 512 66 598 6.81e-25 108
Msa1221250 MtrunA17_Chr1g0160041 25.487 565 326 18 57 546 106 650 3.43e-24 107
Msa1221250 MtrunA17_Chr4g0004101 25.926 324 201 10 246 540 10 323 4.96e-24 103
Msa1221250 MtrunA17_Chr4g0004841 29.078 282 161 11 285 540 64 332 2.97e-22 98.2
Msa1221250 MtrunA17_Chr8g0388081 26.096 502 263 19 46 465 3 478 7.47e-21 96.3
Msa1221250 MtrunA17_Chr3g0120731 23.663 486 282 17 57 464 135 609 7.46e-20 93.6
Msa1221250 MtrunA17_Chr5g0396691 24.063 507 302 22 38 475 57 549 1.68e-18 89.4
Msa1221250 MtrunA17_Chr3g0121931 30.303 198 111 4 338 512 475 668 2.61e-18 88.6
Msa1221250 MtrunA17_Chr5g0396711 24.800 500 284 21 50 475 68 549 6.27e-18 87.4
Msa1221250 MtrunA17_Chr4g0033141 25.416 421 257 18 173 546 661 1071 9.90e-18 87.4
Msa1221250 MtrunA17_Chr8g0377991 39.394 132 65 4 341 461 481 608 2.56e-17 85.5
Msa1221250 MtrunA17_Chr3g0121951 29.798 198 111 5 338 512 471 663 1.20e-16 83.6
Msa1221250 MtrunA17_Chr3g0124631 25.101 247 157 9 311 546 423 652 3.23e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221250 AT3G21240.1 65.876 548 177 5 9 549 11 555 0.0 738
Msa1221250 AT1G51680.1 64.815 540 184 2 15 548 22 561 0.0 701
Msa1221250 AT3G21230.1 61.355 546 200 3 9 544 20 564 0.0 676
Msa1221250 AT1G65060.1 58.672 542 212 6 6 544 28 560 0.0 663
Msa1221250 AT1G51680.3 64.087 504 175 2 15 512 22 525 0.0 645
Msa1221250 AT3G21230.3 60.190 525 194 4 9 523 20 539 0.0 632
Msa1221250 AT3G21240.2 64.842 475 157 5 9 476 11 482 0.0 629
Msa1221250 AT3G21240.3 64.842 475 157 5 9 476 11 482 0.0 629
Msa1221250 AT1G51680.2 64.316 468 161 2 15 476 22 489 0.0 596
Msa1221250 AT3G21230.2 60.879 478 176 3 9 476 20 496 0.0 582
Msa1221250 AT1G65060.2 56.371 463 190 6 6 465 28 481 0.0 539
Msa1221250 AT3G21230.4 56.373 408 167 3 9 406 20 426 5.68e-154 448
Msa1221250 AT4G05160.1 42.202 545 283 8 17 544 11 540 2.06e-144 427
Msa1221250 AT1G20510.1 38.563 529 310 7 18 540 17 536 2.76e-120 365
Msa1221250 AT1G20480.1 39.252 535 306 7 17 541 33 558 1.65e-119 364
Msa1221250 AT1G62940.1 36.949 544 324 6 9 544 4 536 5.85e-114 349
Msa1221250 AT4G19010.1 35.120 541 339 7 6 540 20 554 1.34e-113 349
Msa1221250 AT1G20500.1 35.568 537 325 7 13 540 18 542 4.31e-109 337
Msa1221250 AT5G63380.1 38.677 499 283 10 50 541 69 551 9.33e-109 336
Msa1221250 AT5G38120.1 34.502 542 313 10 18 540 24 542 9.08e-100 313
Msa1221250 AT1G20510.2 37.124 466 278 7 18 477 17 473 4.18e-96 301
Msa1221250 AT5G38120.3 33.398 515 301 10 18 513 24 515 8.43e-89 283
Msa1221250 AT1G20510.3 35.135 444 273 7 18 455 17 451 4.49e-82 264
Msa1221250 AT5G38120.4 33.194 479 278 10 18 477 24 479 4.16e-79 257
Msa1221250 AT5G38120.2 33.194 479 278 10 18 477 24 479 4.16e-79 257
Msa1221250 AT1G20490.2 29.812 426 270 7 13 424 18 428 3.84e-60 206
Msa1221250 AT1G20490.1 29.812 426 270 7 13 424 18 428 3.84e-60 206
Msa1221250 AT3G48990.1 30.891 505 324 15 43 538 16 504 1.39e-54 192
Msa1221250 AT1G77240.1 29.182 538 325 17 37 535 12 532 1.66e-53 190
Msa1221250 AT1G21540.1 28.464 534 325 18 44 535 19 537 9.60e-51 183
Msa1221250 AT1G21530.2 27.829 539 321 19 44 535 19 536 7.50e-48 175
Msa1221250 AT5G16340.1 27.652 528 336 15 44 537 19 534 2.41e-47 174
Msa1221250 AT1G21530.1 27.933 537 321 19 44 535 19 534 7.96e-47 172
Msa1221250 AT1G66120.1 28.464 534 326 19 44 540 27 541 1.11e-44 167
Msa1221250 AT5G16370.1 26.554 531 338 15 44 537 19 534 3.16e-44 165
Msa1221250 AT1G75960.1 27.485 513 323 14 60 540 42 537 3.26e-42 159
Msa1221250 AT1G65880.1 27.957 558 325 23 44 550 27 558 1.34e-41 158
Msa1221250 AT1G65890.1 27.425 536 336 19 44 540 27 548 1.54e-41 158
Msa1221250 AT1G20560.1 27.068 532 335 16 43 537 20 535 1.54e-40 155
Msa1221250 AT3G16910.1 26.716 539 340 17 47 546 38 560 8.47e-38 147
Msa1221250 AT3G16170.1 25.889 506 310 15 78 544 125 604 2.70e-37 146
Msa1221250 AT1G76290.1 26.679 521 341 16 44 540 27 530 1.27e-35 140
Msa1221250 AT1G68270.1 25.501 549 317 21 44 549 27 526 1.29e-34 137
Msa1221250 AT1G20560.2 29.504 383 231 11 170 537 99 457 2.96e-33 132
Msa1221250 AT1G30520.2 26.296 521 319 16 68 540 42 545 1.39e-32 132
Msa1221250 AT1G30520.1 26.296 521 319 16 68 540 42 545 1.39e-32 132
Msa1221250 AT5G36880.6 23.180 522 355 12 58 540 147 661 1.75e-28 120
Msa1221250 AT5G36880.3 23.180 522 355 12 58 540 147 661 1.75e-28 120
Msa1221250 AT5G36880.5 23.180 522 355 12 58 540 147 661 1.75e-28 120
Msa1221250 AT5G36880.1 23.180 522 355 12 58 540 147 661 1.75e-28 120
Msa1221250 AT5G36880.2 23.180 522 355 12 58 540 197 711 2.02e-28 120
Msa1221250 AT5G27600.1 25.988 481 262 19 52 461 110 567 6.58e-27 115
Msa1221250 AT3G05970.1 25.806 527 292 18 10 461 65 567 1.23e-26 115
Msa1221250 AT2G17650.1 24.365 591 374 24 2 546 36 599 1.52e-26 114
Msa1221250 AT1G64400.1 26.572 493 268 18 46 463 65 538 2.55e-25 110
Msa1221250 AT4G11030.1 24.748 497 266 19 47 461 66 536 2.30e-23 104
Msa1221250 AT4G23850.1 24.375 480 266 18 46 449 65 523 2.43e-23 104
Msa1221250 AT1G30520.3 25.935 428 264 14 68 460 42 451 3.66e-23 103
Msa1221250 AT1G30520.4 25.935 428 264 14 68 460 42 451 3.66e-23 103
Msa1221250 AT1G77590.1 24.236 491 289 17 57 475 105 584 2.06e-22 102
Msa1221250 AT2G47240.4 25.314 478 287 16 60 475 19 488 6.27e-21 97.1
Msa1221250 AT2G47240.1 25.314 478 287 16 60 475 78 547 7.88e-21 97.1
Msa1221250 AT2G47240.2 25.314 478 287 16 60 475 78 547 7.88e-21 97.1
Msa1221250 AT2G47240.3 25.314 478 287 16 60 475 78 547 7.88e-21 97.1
Msa1221250 AT2G04350.2 24.025 487 273 19 60 464 131 602 1.21e-20 96.7
Msa1221250 AT2G04350.1 24.025 487 273 19 60 464 131 602 1.21e-20 96.7
Msa1221250 AT5G36880.4 22.078 462 317 11 58 483 147 601 1.31e-20 96.3
Msa1221250 AT1G77590.2 24.944 449 252 18 100 475 2 438 9.23e-20 93.2
Msa1221250 AT3G23790.1 43.478 92 48 1 341 432 479 566 4.07e-15 79.0
Msa1221250 AT4G14070.1 38.542 96 55 1 337 432 491 582 1.05e-13 74.7
Msa1221250 AT5G35930.4 22.512 422 259 13 165 544 172 567 1.48e-12 71.2
Msa1221250 AT5G35930.1 22.512 422 259 13 165 544 80 475 1.62e-12 70.9

Find 164 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTAATGTTTCAAGCTTAT+AGG 0.224324 8_1:-84804566 None:intergenic
ATTTCACCAGCTTTGTTTCT+TGG 0.226424 8_1:-84800509 None:intergenic
TTGATCTGGTGGAGCTAATT+TGG 0.241525 8_1:-84798077 None:intergenic
TGTTGAATTGAGAAAGGTTT+TGG 0.256297 8_1:-84798268 None:intergenic
ATTTGAGATAACTAAGGTTT+TGG 0.266861 8_1:+84798961 Msa1221250:CDS
GGAACTTATTGAAAAGTATA+AGG 0.267484 8_1:+84798982 Msa1221250:CDS
TGATATATGCTACAGGGATA+TGG 0.268872 8_1:+84800350 Msa1221250:intron
TATATTGATTTAGCTAAGTT+TGG 0.291597 8_1:-84798100 None:intergenic
TTGTTGCCTCCGGGTCATTT+AGG 0.297187 8_1:-84803128 None:intergenic
CTATTCCTCTCCTGCTTGAT+AGG 0.297419 8_1:+84804238 Msa1221250:three_prime_UTR
TGTGTTGGAATTTCAATATC+AGG 0.302738 8_1:-84798221 None:intergenic
GCTGGTGAAATTTGTATTAG+AGG 0.314435 8_1:+84800521 Msa1221250:CDS
TTACTATGTGGTATTCGTTC+TGG 0.314962 8_1:+84798914 Msa1221250:CDS
TCTGTTAGTCACATCGGATT+TGG 0.317783 8_1:+84804442 Msa1221250:three_prime_UTR
TTTCAGACGTGTGAATAATA+TGG 0.330933 8_1:+84797977 Msa1221250:five_prime_UTR
TGTGTTAACATAACACCTTT+AGG 0.340407 8_1:-84798767 None:intergenic
TTTACCAATGCTAAAACAAT+TGG 0.354078 8_1:-84799028 None:intergenic
ATAGTTCTCTTTGTTGCCTC+CGG 0.363221 8_1:-84803138 None:intergenic
CAGTTCCGATGAGGTGTAGA+AGG 0.365975 8_1:-84798498 None:intergenic
AAACATTACATGGGTTTACT+TGG 0.367160 8_1:+84804469 Msa1221250:three_prime_UTR
GATCTTACAACAAATGCAAC+TGG 0.374775 8_1:-84803549 None:intergenic
TTAGCTAAGTTTGGTTGATC+TGG 0.387535 8_1:-84798091 None:intergenic
CGATGTGACTAACAGATCTA+AGG 0.390166 8_1:-84804435 None:intergenic
GGTAACGCAACTACGTCGTT+TGG 0.393743 8_1:-84798719 None:intergenic
GGTGGACGTCGGAGTACGTT+AGG 0.404006 8_1:-84798328 None:intergenic
AAATGTGAATGGTGGTAGTT+TGG 0.404904 8_1:-84798036 None:intergenic
TGATGATCCTGCGACTCAAT+AGG 0.405357 8_1:+84804214 Msa1221250:three_prime_UTR
TCTTATGTTGCGGTTTGGTT+TGG 0.405584 8_1:-84804834 None:intergenic
TCTATTAGAGTGATGATAAC+TGG 0.408293 8_1:+84799082 Msa1221250:CDS
AAATTTCTTATGTTGCGGTT+TGG 0.411748 8_1:-84804839 None:intergenic
TCATGATGACATCACCTTGT+TGG 0.412338 8_1:-84798394 None:intergenic
GCACCAGGCTTTGTCTTGAA+TGG 0.415126 8_1:-84800422 None:intergenic
GCATTTGTTGTAAGATCAAA+TGG 0.425802 8_1:+84803555 Msa1221250:CDS
GGAACTTGAACAAGCTGTTA+AGG 0.429990 8_1:+84799123 Msa1221250:CDS
AAAATAGTGGACACAGAAAC+TGG 0.432799 8_1:+84800476 Msa1221250:CDS
CAATTTGCACTCACCTTCCT+CGG 0.434193 8_1:+84798437 Msa1221250:CDS
TATTCCTCTCCTGCTTGATA+GGG 0.434627 8_1:+84804239 Msa1221250:three_prime_UTR
GTAACGCAACTACGTCGTTT+GGG 0.435729 8_1:-84798718 None:intergenic
CTTCTACACCTCATCGGAAC+TGG 0.437378 8_1:+84798499 Msa1221250:CDS
GGAACTTCTGGTTTACCTAA+AGG 0.438411 8_1:+84798752 Msa1221250:CDS
AACAATGCTTCGAGCTCAGC+AGG 0.444462 8_1:-84803276 None:intergenic
ATTTGGCTTCAAACATTACA+TGG 0.445317 8_1:+84804459 Msa1221250:three_prime_UTR
GAATGGTGGTAGTTTGGTTA+TGG 0.447348 8_1:-84798030 None:intergenic
AGATTGAAAGATGAAGTTGC+TGG 0.447703 8_1:+84803519 Msa1221250:intron
TAGTTCTCTTTGTTGCCTCC+GGG 0.451441 8_1:-84803137 None:intergenic
CATCCTCGTAGTTTGTGTAT+TGG 0.452212 8_1:-84798841 None:intergenic
ACCAATGCTAAAACAATTGG+TGG 0.453202 8_1:-84799025 None:intergenic
ACAGCAGCATCAGAAATGTT+TGG 0.455191 8_1:-84803309 None:intergenic
CGAGCTCAGCAGGAGCTACT+TGG 0.455494 8_1:-84803266 None:intergenic
TGTTCTTGTTGTGGAGGAGA+TGG 0.455920 8_1:-84798167 None:intergenic
GATATATGCTACAGGGATAT+GGG 0.456211 8_1:+84800351 Msa1221250:intron
TGAGAAATTTGAGATAACTA+AGG 0.461484 8_1:+84798955 Msa1221250:CDS
CACCAGCTTTGTTTCTTGGA+AGG 0.461904 8_1:-84800505 None:intergenic
AGTATTGAGTTTCCGACGAC+AGG 0.466152 8_1:-84804776 None:intergenic
TGCAAGACTTAACGAAGGTC+TGG 0.471141 8_1:+84803943 Msa1221250:CDS
GACGGTTGTTGAATTGAGAA+AGG 0.471379 8_1:-84798274 None:intergenic
CATTACATGGGTTTACTTGG+AGG 0.474118 8_1:+84804472 Msa1221250:three_prime_UTR
AGGACCACTTTCAATTAGCT+TGG 0.474310 8_1:+84800385 Msa1221250:CDS
TGGTAACATCAGTAGTTGTT+GGG 0.474435 8_1:-84798010 None:intergenic
GCCACGAACTGTACTTGGAC+AGG 0.475082 8_1:+84799153 Msa1221250:CDS
ATGGTAACATCAGTAGTTGT+TGG 0.475192 8_1:-84798011 None:intergenic
GCTAAGTTTGGTTGATCTGG+TGG 0.475678 8_1:-84798088 None:intergenic
TGGAAACAGTATGAGTGTAA+TGG 0.478337 8_1:-84798248 None:intergenic
GCCGCCGGTCTAAACACTCT+TGG 0.487351 8_1:+84798368 Msa1221250:CDS
TTGTTCAAGTTCCATTCCCA+TGG 0.491121 8_1:-84799113 None:intergenic
GTGGACGTCGGAGTACGTTA+GGG 0.491987 8_1:-84798327 None:intergenic
ATGAATACCTTTCATAACCT+TGG 0.495694 8_1:-84800546 None:intergenic
CAAGCAATACATATCACAAC+AGG 0.497758 8_1:+84803602 Msa1221250:CDS
GATAACTGGTGCTGCTCCCA+TGG 0.499661 8_1:+84799096 Msa1221250:CDS
ACCTGTCCAAGTACAGTTCG+TGG 0.500239 8_1:-84799154 None:intergenic
TGTCACATGGACTTAATTCG+TGG 0.503422 8_1:-84803972 None:intergenic
ACCAGCTTTGTTTCTTGGAA+GGG 0.507882 8_1:-84800504 None:intergenic
AGGTTGCCACGAACTGTACT+TGG 0.509307 8_1:+84799148 Msa1221250:CDS
TGGTGCTGCTCCCATGGGAA+TGG 0.513144 8_1:+84799102 Msa1221250:CDS
ACATCAGTAGTTGTTGGGAC+AGG 0.513453 8_1:-84798005 None:intergenic
TTGTCTGAAGATTCGACGAC+TGG 0.517719 8_1:+84804686 Msa1221250:three_prime_UTR
AAACGCTGAGATGAAAATAG+TGG 0.520930 8_1:+84800463 Msa1221250:CDS
GCGGAAGGAGGCACCGAGGA+AGG 0.521219 8_1:-84798450 None:intergenic
GAATAGTCCTATTGAGTCGC+AGG 0.523557 8_1:-84804221 None:intergenic
GAGTGTAATGGAAGGTGTGT+TGG 0.523918 8_1:-84798236 None:intergenic
CCAGAAGTTCCTGAAGAAAA+CGG 0.526342 8_1:-84798740 None:intergenic
TACGACAGAAGAGTGCGTGC+TGG 0.529137 8_1:+84804628 Msa1221250:three_prime_UTR
GAACCATTCAAGACAAAGCC+TGG 0.529977 8_1:+84800419 Msa1221250:CDS
AATTAGCTTGGCATTTGCAA+AGG 0.531695 8_1:+84800397 Msa1221250:CDS
TTGAACAAGCTGTTAAGGAT+AGG 0.537257 8_1:+84799128 Msa1221250:CDS
TGTCTCATCAACGGCGACAC+CGG 0.538991 8_1:+84798299 Msa1221250:CDS
TTCCTCTCCTGCTTGATAGG+GGG 0.542652 8_1:+84804241 Msa1221250:three_prime_UTR
TCCCTTCCAAGAAACAAAGC+TGG 0.544071 8_1:+84800503 Msa1221250:CDS
ACAATATCACAGTTAGTTGA+CGG 0.544955 8_1:+84798806 Msa1221250:CDS
ACTATTCCTAAAGCTGCCTC+AGG 0.548272 8_1:+84803896 Msa1221250:CDS
TCGTAGTTTGTGTATTGGTG+TGG 0.549665 8_1:-84798836 None:intergenic
ACGACTGTGCCACATGCACC+AGG 0.550955 8_1:-84800437 None:intergenic
ATGAACTCTTCATTGTTGAT+CGG 0.551788 8_1:+84803214 Msa1221250:CDS
GTGCAAATTGAGGAGAGTTA+CGG 0.552408 8_1:-84798424 None:intergenic
GCAATATCCGTTTCTGTACG+TGG 0.552778 8_1:+84804103 Msa1221250:three_prime_UTR
GGAGTACGTTAGGGTTTCTC+CGG 0.554294 8_1:-84798318 None:intergenic
TTTGCACCCACGTACAGAAA+CGG 0.556292 8_1:-84804110 None:intergenic
AAATACTTATAGAAACTCAA+TGG 0.558661 8_1:+84804888 Msa1221250:three_prime_UTR
AGGAAGGTGAGTGCAAATTG+AGG 0.559768 8_1:-84798434 None:intergenic
TGGCTACACACAGGTGACAT+TGG 0.562833 8_1:+84803174 Msa1221250:CDS
AAGAGAACTATAGACAAAGA+AGG 0.563429 8_1:+84803150 Msa1221250:CDS
ATTCCTCTCCTGCTTGATAG+GGG 0.565293 8_1:+84804240 Msa1221250:three_prime_UTR
GTGTTGGAATTTCAATATCA+GGG 0.565424 8_1:-84798220 None:intergenic
AAAGAATTGATTAAATACAA+AGG 0.566099 8_1:+84803240 Msa1221250:CDS
GGAGGAAGATGAACGTGTTG+TGG 0.568406 8_1:+84798640 Msa1221250:CDS
GGAAGAACAAAAGAAAATGA+CGG 0.571988 8_1:-84804660 None:intergenic
AATGCCAAGCTAATTGAAAG+TGG 0.574861 8_1:-84800389 None:intergenic
AGTGCATAGATATGAAACAT+AGG 0.575430 8_1:-84798881 None:intergenic
CAATATCAGGGAGCTTAGAA+CGG 0.576024 8_1:-84798208 None:intergenic
TGAGGTGTAGAAGGGATTTG+CGG 0.578595 8_1:-84798489 None:intergenic
TGTTCAAGTTCCATTCCCAT+GGG 0.583375 8_1:-84799112 None:intergenic
ACCGTCCGCAAAATCGCCGC+CGG 0.583860 8_1:+84798353 Msa1221250:CDS
GATAACCGCGCCGCGGAAGG+AGG 0.585502 8_1:-84798462 None:intergenic
TGAAGATTCGACGACTGGCA+AGG 0.587018 8_1:+84804691 Msa1221250:three_prime_UTR
AAGACAAAGCCTGGTGCATG+TGG 0.587138 8_1:+84800428 Msa1221250:CDS
TTGTATCCGTCTTTGTCACA+TGG 0.587574 8_1:-84803985 None:intergenic
GGATATGGGATGACAGAGGC+AGG 0.587842 8_1:+84800365 Msa1221250:CDS
ACAGGCCTCTCCTCTTCGAA+AGG 0.588917 8_1:+84804736 Msa1221250:three_prime_UTR
CGCCGTTGATGAGACATTGA+CGG 0.589042 8_1:-84798292 None:intergenic
GATTCCAAGAGTGTTTAGAC+CGG 0.589374 8_1:-84798372 None:intergenic
CATCAGTAGTTGTTGGGACA+GGG 0.590035 8_1:-84798004 None:intergenic
CTTAGATCTGTTAGTCACAT+CGG 0.590730 8_1:+84804436 Msa1221250:three_prime_UTR
CGTCGAATCTTCAGACAAAG+AGG 0.592864 8_1:-84804681 None:intergenic
ATAACTGGTGCTGCTCCCAT+GGG 0.598182 8_1:+84799097 Msa1221250:CDS
TCCAAGAGTGTTTAGACCGG+CGG 0.600632 8_1:-84798369 None:intergenic
TGTGTGCATTGATTCGTCAT+CGG 0.601363 8_1:+84798619 Msa1221250:CDS
ATCACATAAAGAAACCGCAT+GGG 0.605441 8_1:-84804175 None:intergenic
AACACTCTTGGAATCCAACA+AGG 0.607086 8_1:+84798380 Msa1221250:CDS
AGAGGCACCAAGGTTATGAA+AGG 0.607601 8_1:+84800539 Msa1221250:CDS
AATCACATAAAGAAACCGCA+TGG 0.607782 8_1:-84804176 None:intergenic
GAACTATAGACAAAGAAGGA+TGG 0.611844 8_1:+84803154 Msa1221250:CDS
ATGTATGTATGAAATGTGAA+TGG 0.611977 8_1:-84798047 None:intergenic
AAATCCCTTCTACACCTCAT+CGG 0.618454 8_1:+84798493 Msa1221250:CDS
TTGTTTAGCCAGTTCCGATG+AGG 0.620036 8_1:-84798507 None:intergenic
TTCCTCGGTGCCTCCTTCCG+CGG 0.621675 8_1:+84798452 Msa1221250:CDS
CACGCACTCTTCTGTCGTAG+AGG 0.623082 8_1:-84804624 None:intergenic
TGTTGTGGAGGAGATGGAGA+TGG 0.624273 8_1:-84798161 None:intergenic
TTTAAAAGAAAGCCTGTCGT+CGG 0.627865 8_1:+84804764 Msa1221250:three_prime_UTR
AACCGTCAATGTCTCATCAA+CGG 0.628190 8_1:+84798290 Msa1221250:CDS
AGTTCCGATGAGGTGTAGAA+GGG 0.629957 8_1:-84798497 None:intergenic
GTGCATTGATTCGTCATCGG+AGG 0.630562 8_1:+84798622 Msa1221250:CDS
TTTGGCTTCAAACATTACAT+GGG 0.633593 8_1:+84804460 Msa1221250:three_prime_UTR
TTAAGTCCATGTGACAAAGA+CGG 0.634678 8_1:+84803979 Msa1221250:exon
ATCAGGATACCTAAATGACC+CGG 0.634966 8_1:+84803119 Msa1221250:intron
TTAAACTTGACCTTTCGAAG+AGG 0.635513 8_1:-84804746 None:intergenic
CTTGACCTTTCGAAGAGGAG+AGG 0.635727 8_1:-84804741 None:intergenic
TGCAGTTGCATATATATGCG+TGG 0.644242 8_1:+84804030 Msa1221250:three_prime_UTR
GCGGACGGTGAGGTGGACGT+CGG 0.646515 8_1:-84798339 None:intergenic
TATTGAAAAGTATAAGGTGA+CGG 0.646708 8_1:+84798988 Msa1221250:CDS
CGCCGCGGAAGGAGGCACCG+AGG 0.655697 8_1:-84798454 None:intergenic
CAATATCCGTTTCTGTACGT+GGG 0.656378 8_1:+84804104 Msa1221250:three_prime_UTR
TATGTATGAAATGTGAATGG+TGG 0.658123 8_1:-84798044 None:intergenic
AATTTGTATTAGAGGCACCA+AGG 0.664823 8_1:+84800529 Msa1221250:CDS
CGGTGGTGATAACCGCGCCG+CGG 0.680948 8_1:-84798469 None:intergenic
AACAGTATGAGTGTAATGGA+AGG 0.696571 8_1:-84798244 None:intergenic
GGTGTAGAAGGGATTTGCGG+TGG 0.703235 8_1:-84798486 None:intergenic
CAAATTGAGGAGAGTTACGG+AGG 0.706119 8_1:-84798421 None:intergenic
AAAGAAGGATGGCTACACAC+AGG 0.711154 8_1:+84803165 Msa1221250:CDS
TTAACTGCAAGACTTAACGA+AGG 0.717559 8_1:+84803938 Msa1221250:CDS
ACAGGGATATGGGATGACAG+AGG 0.730581 8_1:+84800361 Msa1221250:intron
AAATGGTTCAAAGATCAGTG+AGG 0.746664 8_1:+84803572 Msa1221250:CDS
AGGATACCTAAATGACCCGG+AGG 0.746839 8_1:+84803122 Msa1221250:intron
GCATATTGGATCAACCCATG+CGG 0.763686 8_1:+84804161 Msa1221250:three_prime_UTR
ACACCAATACACAAACTACG+AGG 0.785558 8_1:+84798838 Msa1221250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTTATAAATGAAAATA+TGG - chr8_1:84799186-84799205 None:intergenic 10.0%
!! GATCATTTATTATTAAATAT+TGG - chr8_1:84799942-84799961 None:intergenic 10.0%
!! TATTACAAATAATATAAATG+GGG + chr8_1:84800240-84800259 Msa1221250:intron 10.0%
!!! ATTTAAAGTGTTTTATAATT+AGG + chr8_1:84801368-84801387 Msa1221250:intron 10.0%
!!! TCTTTTAAAATAAATAAGTT+GGG - chr8_1:84801587-84801606 None:intergenic 10.0%
!!! ATCTTTTAAAATAAATAAGT+TGG - chr8_1:84801588-84801607 None:intergenic 10.0%
!! TATTTAGTTATTGTATAAAA+AGG + chr8_1:84802668-84802687 Msa1221250:intron 10.0%
!! TATTAAAAACAAAACTTAAG+TGG - chr8_1:84799563-84799582 None:intergenic 15.0%
!! TGACTTATAAAAAAAATGAT+TGG + chr8_1:84799656-84799675 Msa1221250:intron 15.0%
!! AAAAATACTTAATGTATAGA+AGG + chr8_1:84800289-84800308 Msa1221250:intron 15.0%
!!! TAGATAAAGATATTTTTGTA+AGG + chr8_1:84801324-84801343 Msa1221250:intron 15.0%
!! ATTAACATATGTAAAAGAAT+GGG + chr8_1:84801712-84801731 Msa1221250:intron 15.0%
!! CATAACAATACTAAATAAAA+CGG - chr8_1:84801844-84801863 None:intergenic 15.0%
!! TCGTATTAAAATATAGAAAA+CGG - chr8_1:84801905-84801924 None:intergenic 15.0%
!!! TGAAATTCTTTTATTATAAG+AGG - chr8_1:84801939-84801958 None:intergenic 15.0%
!! AAATCAAAATAAGTTATCAA+AGG - chr8_1:84802505-84802524 None:intergenic 15.0%
!!! TATTTTGATTTGAATAAGAT+TGG + chr8_1:84802514-84802533 Msa1221250:intron 15.0%
!!! TAACAGTTATACATTTTAAT+TGG + chr8_1:84802995-84803014 Msa1221250:intron 15.0%
!! TTATTGATGAATACTATAAT+TGG - chr8_1:84803045-84803064 None:intergenic 15.0%
!! AAAGAATTGATTAAATACAA+AGG + chr8_1:84803240-84803259 Msa1221250:CDS 15.0%
!! ATGACTAATTATAATGATAA+TGG + chr8_1:84803486-84803505 Msa1221250:intron 15.0%
!! AGAAAATTATTCTACTAATT+TGG - chr8_1:84803644-84803663 None:intergenic 15.0%
!!! TAGAATAATTTTCTTGTTAT+GGG + chr8_1:84803650-84803669 Msa1221250:intron 15.0%
!!! GAGTAAAATAATTTTTCTAT+AGG + chr8_1:84804380-84804399 Msa1221250:three_prime_UTR 15.0%
!!! ATAATTTTTCTATAGGAAAA+TGG + chr8_1:84804387-84804406 Msa1221250:three_prime_UTR 15.0%
!! TTAAAAAATTTCTTATGTTG+CGG - chr8_1:84804847-84804866 None:intergenic 15.0%
!! TTTAAATAAAAAGCAAAGAA+GGG - chr8_1:84804953-84804972 None:intergenic 15.0%
!!! TTTTAAATAAAAAGCAAAGA+AGG - chr8_1:84804954-84804973 None:intergenic 15.0%
!!! TATATTGATTTAGCTAAGTT+TGG - chr8_1:84798103-84798122 None:intergenic 20.0%
!! AGAATAATAATCATTGTGAT+AGG - chr8_1:84799408-84799427 None:intergenic 20.0%
!!! AAAACTTAAGTTGTTATCAT+AGG - chr8_1:84799522-84799541 None:intergenic 20.0%
!!! TTAATTTGTATGCACTTTTT+AGG - chr8_1:84799704-84799723 None:intergenic 20.0%
!!! GTACACTAATAAATTTTGAA+AGG - chr8_1:84800027-84800046 None:intergenic 20.0%
!! GTAATAATCATAATAACAAG+TGG - chr8_1:84800149-84800168 None:intergenic 20.0%
!!! TTTAATTTGATATATGCTAC+AGG + chr8_1:84800343-84800362 Msa1221250:intron 20.0%
!!! TTAATTTGATATATGCTACA+GGG + chr8_1:84800344-84800363 Msa1221250:intron 20.0%
!!! AAATATTTTGATCGATGATA+TGG + chr8_1:84800901-84800920 Msa1221250:intron 20.0%
!! ATTTATCCATATAACTTCAT+CGG + chr8_1:84801081-84801100 Msa1221250:intron 20.0%
!!! AGTGTTTTATAATTAGGAAT+TGG + chr8_1:84801374-84801393 Msa1221250:intron 20.0%
!!! TTTTATAATTAGGAATTGGA+GGG + chr8_1:84801378-84801397 Msa1221250:intron 20.0%
!! GATTAACATATGTAAAAGAA+TGG + chr8_1:84801711-84801730 Msa1221250:intron 20.0%
!! TATTAAAATATAGAAAACGG+TGG - chr8_1:84801902-84801921 None:intergenic 20.0%
!! ATTGTTGTATGCATTAATTT+AGG + chr8_1:84802004-84802023 Msa1221250:intron 20.0%
!! ATTAAAGTATGCACAAATAA+GGG - chr8_1:84802115-84802134 None:intergenic 20.0%
!! AATTAAAGTATGCACAAATA+AGG - chr8_1:84802116-84802135 None:intergenic 20.0%
!!! ATGTTGCATTTAGTATTTTA+AGG + chr8_1:84802549-84802568 Msa1221250:intron 20.0%
!!! CATTTAGTATTTTAAGGTTT+AGG + chr8_1:84802555-84802574 Msa1221250:intron 20.0%
!!! AGGTTTGATTTATATTTAGT+AGG + chr8_1:84802605-84802624 Msa1221250:intron 20.0%
!!! TTTCTTGTTTTTATTTGACA+AGG - chr8_1:84802702-84802721 None:intergenic 20.0%
!! TGTCAAATAAAAACAAGAAA+AGG + chr8_1:84802702-84802721 Msa1221250:intron 20.0%
!! TTTATCTAAATAAGAACCTA+TGG - chr8_1:84802736-84802755 None:intergenic 20.0%
!!! TTTTTATGAAAACACTGATA+TGG - chr8_1:84802869-84802888 None:intergenic 20.0%
!!! AATTATAATGATAATGGTGT+TGG + chr8_1:84803492-84803511 Msa1221250:intron 20.0%
!!! GTAGAATAATTTTCTTGTTA+TGG + chr8_1:84803649-84803668 Msa1221250:intron 20.0%
!! ATAATATGCAATGATGTAAT+AGG - chr8_1:84803754-84803773 None:intergenic 20.0%
!! AAATACTTATAGAAACTCAA+TGG + chr8_1:84804888-84804907 Msa1221250:three_prime_UTR 20.0%
! ATGTATGTATGAAATGTGAA+TGG - chr8_1:84798050-84798069 None:intergenic 25.0%
!!! ATTTTGATATTAGGAGAATG+AGG - chr8_1:84798137-84798156 None:intergenic 25.0%
!!! GATGGTAACATTTTGATATT+AGG - chr8_1:84798146-84798165 None:intergenic 25.0%
!!! TTTGGGTTTATTTTAACTTC+TGG - chr8_1:84798704-84798723 None:intergenic 25.0%
!! CTAAATTCGATTTTACTATG+TGG + chr8_1:84798902-84798921 Msa1221250:CDS 25.0%
!! TGAGAAATTTGAGATAACTA+AGG + chr8_1:84798955-84798974 Msa1221250:CDS 25.0%
!!! ATTTGAGATAACTAAGGTTT+TGG + chr8_1:84798961-84798980 Msa1221250:CDS 25.0%
!! GGAACTTATTGAAAAGTATA+AGG + chr8_1:84798982-84799001 Msa1221250:CDS 25.0%
!! TATTGAAAAGTATAAGGTGA+CGG + chr8_1:84798988-84799007 Msa1221250:CDS 25.0%
! TTTACCAATGCTAAAACAAT+TGG - chr8_1:84799031-84799050 None:intergenic 25.0%
!!! TTTTAGCATTGGTAAAAAGT+GGG + chr8_1:84799035-84799054 Msa1221250:CDS 25.0%
! AAAATATTTGTGACTAGGAA+AGG - chr8_1:84799227-84799246 None:intergenic 25.0%
! CAGAAAAAATATTTGTGACT+AGG - chr8_1:84799232-84799251 None:intergenic 25.0%
! TACCAAAGATATTAAGTGTA+GGG + chr8_1:84799296-84799315 Msa1221250:intron 25.0%
!!! TTTTTTGTCTGATAGTTTAG+TGG - chr8_1:84799378-84799397 None:intergenic 25.0%
!! AAAGAAGCTATCTTTTCATT+CGG + chr8_1:84799452-84799471 Msa1221250:intron 25.0%
!! ATTTTCCCAGTATATATGAA+AGG + chr8_1:84800615-84800634 Msa1221250:intron 25.0%
!! TTTTCCCAGTATATATGAAA+GGG + chr8_1:84800616-84800635 Msa1221250:intron 25.0%
! AATACCCTTTCATATATACT+GGG - chr8_1:84800623-84800642 None:intergenic 25.0%
! AAAAGTAGAAACTACGTTAA+AGG + chr8_1:84800699-84800718 Msa1221250:intron 25.0%
! GCATAAAAAAGTAGATGATT+TGG + chr8_1:84800795-84800814 Msa1221250:intron 25.0%
!!! GGATAAAAAAGTTGATGATT+TGG + chr8_1:84800843-84800862 Msa1221250:intron 25.0%
!! GTTTTATAATTAGGAATTGG+AGG + chr8_1:84801377-84801396 Msa1221250:intron 25.0%
! GAACAGTTTATAATAGGAAT+TGG + chr8_1:84801400-84801419 Msa1221250:intron 25.0%
! AGTTTATAATAGGAATTGGA+GGG + chr8_1:84801404-84801423 Msa1221250:intron 25.0%
! TGAGAAATTACAAATTCTTC+TGG + chr8_1:84801472-84801491 Msa1221250:intron 25.0%
! TAATCATACGTTGAAAACTA+AGG - chr8_1:84801696-84801715 None:intergenic 25.0%
!! TCTTTTGGTGAACATATATT+TGG - chr8_1:84801765-84801784 None:intergenic 25.0%
! ATGTTCACCAAAAGAAAAAA+CGG + chr8_1:84801770-84801789 Msa1221250:intron 25.0%
! TAAAACGGCGAAAATAAATT+AGG - chr8_1:84801829-84801848 None:intergenic 25.0%
! TGATTTCAAACTAATTGTCA+TGG - chr8_1:84802243-84802262 None:intergenic 25.0%
! TCAAAATAAGTTATCAAAGG+TGG - chr8_1:84802502-84802521 None:intergenic 25.0%
! TATGAAATCCATTAGTAATG+AGG + chr8_1:84803372-84803391 Msa1221250:intron 25.0%
! ATGAAATCCATTAGTAATGA+GGG + chr8_1:84803373-84803392 Msa1221250:intron 25.0%
!! CATTTGTTTGTTGCAAAAAT+AGG + chr8_1:84803786-84803805 Msa1221250:intron 25.0%
! AAGAAAATTATGAACTGAAG+TGG + chr8_1:84803815-84803834 Msa1221250:intron 25.0%
! CAATTAATAGTACTCACAAA+GGG - chr8_1:84804317-84804336 None:intergenic 25.0%
! AGTACTATTAATTGCATGTT+TGG + chr8_1:84804323-84804342 Msa1221250:intron 25.0%
! GTACTATTAATTGCATGTTT+GGG + chr8_1:84804324-84804343 Msa1221250:intron 25.0%
!!! GAAAATGGACTTTGATTTTA+TGG + chr8_1:84804402-84804421 Msa1221250:three_prime_UTR 25.0%
!!! AAGTTTTCATGTCATTTTGT+AGG - chr8_1:84804504-84804523 None:intergenic 25.0%
! ACTTAATGTTTCAAGCTTAT+AGG - chr8_1:84804569-84804588 None:intergenic 25.0%
! CTGTTAAAAAGAAAGTTGAA+AGG - chr8_1:84804720-84804739 None:intergenic 25.0%
!! CTTTCAACTTTCTTTTTAAC+AGG + chr8_1:84804718-84804737 Msa1221250:three_prime_UTR 25.0%
TTTCAGACGTGTGAATAATA+TGG + chr8_1:84797977-84797996 Msa1221250:five_prime_UTR 30.0%
TATGTATGAAATGTGAATGG+TGG - chr8_1:84798047-84798066 None:intergenic 30.0%
!!! TCTTGTTTTTGTTCTTGTTG+TGG - chr8_1:84798179-84798198 None:intergenic 30.0%
GTGTTGGAATTTCAATATCA+GGG - chr8_1:84798223-84798242 None:intergenic 30.0%
TGTGTTGGAATTTCAATATC+AGG - chr8_1:84798224-84798243 None:intergenic 30.0%
! TGTTGAATTGAGAAAGGTTT+TGG - chr8_1:84798271-84798290 None:intergenic 30.0%
!!! GATGAGTTTAGTTTTTGTTG+CGG - chr8_1:84798537-84798556 None:intergenic 30.0%
TGTGTTAACATAACACCTTT+AGG - chr8_1:84798770-84798789 None:intergenic 30.0%
ACAATATCACAGTTAGTTGA+CGG + chr8_1:84798806-84798825 Msa1221250:CDS 30.0%
AGTGCATAGATATGAAACAT+AGG - chr8_1:84798884-84798903 None:intergenic 30.0%
!!! GTTTTAGCATTGGTAAAAAG+TGG + chr8_1:84799034-84799053 Msa1221250:CDS 30.0%
!! TTTAGCATTGGTAAAAAGTG+GGG + chr8_1:84799036-84799055 Msa1221250:CDS 30.0%
TCTATTAGAGTGATGATAAC+TGG + chr8_1:84799082-84799101 Msa1221250:CDS 30.0%
CTACCAAAGATATTAAGTGT+AGG + chr8_1:84799295-84799314 Msa1221250:intron 30.0%
ACCAAAGATATTAAGTGTAG+GGG + chr8_1:84799297-84799316 Msa1221250:intron 30.0%
TAGATTTCACACTTTATGTG+TGG - chr8_1:84799354-84799373 None:intergenic 30.0%
! AAGAAGCTATCTTTTCATTC+GGG + chr8_1:84799453-84799472 Msa1221250:intron 30.0%
! AATATTTTCAGTAGAGCGAA+AGG + chr8_1:84799480-84799499 Msa1221250:intron 30.0%
! TTTTTGTGTACAACTGATCA+AGG - chr8_1:84799894-84799913 None:intergenic 30.0%
ACAAGTTCCCATTTCAAAAT+TGG + chr8_1:84799979-84799998 Msa1221250:intron 30.0%
CAAGTTCCCATTTCAAAATT+GGG + chr8_1:84799980-84799999 Msa1221250:intron 30.0%
!!! CCTTAACCCAATTTTGAAAT+GGG - chr8_1:84799989-84800008 None:intergenic 30.0%
ATGAATACCTTTCATAACCT+TGG - chr8_1:84800549-84800568 None:intergenic 30.0%
GAATACCCTTTCATATATAC+TGG - chr8_1:84800624-84800643 None:intergenic 30.0%
AATTTAACAAGGTCTTGCTA+AGG + chr8_1:84800666-84800685 Msa1221250:intron 30.0%
ATTTAACAAGGTCTTGCTAA+GGG + chr8_1:84800667-84800686 Msa1221250:intron 30.0%
AAATTGAATATACATGCACC+AGG + chr8_1:84800773-84800792 Msa1221250:intron 30.0%
!!! ATCATCTACTTTTTTATGCC+TGG - chr8_1:84800794-84800813 None:intergenic 30.0%
!! AAAAGTAGATGATTTGGTTG+AGG + chr8_1:84800801-84800820 Msa1221250:intron 30.0%
!! AAAGTAGATGATTTGGTTGA+GGG + chr8_1:84800802-84800821 Msa1221250:intron 30.0%
!!! TATTTTGATCGATGATATGG+TGG + chr8_1:84800904-84800923 Msa1221250:intron 30.0%
GACAGTAAAAGTTGCATTTA+TGG + chr8_1:84800939-84800958 Msa1221250:intron 30.0%
TGATGTATACACTTCTAACA+AGG - chr8_1:84801185-84801204 None:intergenic 30.0%
CAGTTTATAATAGGAATTGG+AGG + chr8_1:84801403-84801422 Msa1221250:intron 30.0%
AAATGTCTGAGTTTGAATCT+AGG + chr8_1:84801559-84801578 Msa1221250:intron 30.0%
ATATTTGGACTCTACTATGA+TGG - chr8_1:84801750-84801769 None:intergenic 30.0%
TGTTCACCAAAAGAAAAAAC+GGG + chr8_1:84801771-84801790 Msa1221250:intron 30.0%
! TAAATTAGGATTGGTGTAGT+TGG - chr8_1:84801815-84801834 None:intergenic 30.0%
ATTGCTGTAAAATGAGAAAG+TGG - chr8_1:84802030-84802049 None:intergenic 30.0%
ACTGATTATAAACATTCCCA+CGG - chr8_1:84802374-84802393 None:intergenic 30.0%
GGAATGTTTATAATCAGTGA+CGG + chr8_1:84802376-84802395 Msa1221250:intron 30.0%
ATCCAACATTATAGTTGTGT+TGG + chr8_1:84802470-84802489 Msa1221250:intron 30.0%
ATCCAACACAACTATAATGT+TGG - chr8_1:84802475-84802494 None:intergenic 30.0%
! ATTTGAATAAGATTGGCTAC+AGG + chr8_1:84802521-84802540 Msa1221250:intron 30.0%
TTGAATTAGTGTAGTGAGTT+AGG - chr8_1:84802787-84802806 None:intergenic 30.0%
TTTATGAAAACACTCCTATG+TGG - chr8_1:84802820-84802839 None:intergenic 30.0%
ATGAAAACACTGATATGGTT+AGG - chr8_1:84802864-84802883 None:intergenic 30.0%
AAGAGAACTATAGACAAAGA+AGG + chr8_1:84803150-84803169 Msa1221250:CDS 30.0%
ATGAACTCTTCATTGTTGAT+CGG + chr8_1:84803214-84803233 Msa1221250:CDS 30.0%
ATCTCTAGTCTAGTTACTTA+CGG - chr8_1:84803339-84803358 None:intergenic 30.0%
CTTTATTCCCTCATTACTAA+TGG - chr8_1:84803383-84803402 None:intergenic 30.0%
!!! ATTTTTTCCGTCACTAACTT+TGG + chr8_1:84803408-84803427 Msa1221250:intron 30.0%
TTAGTAACCAAAGTTAGTGA+CGG - chr8_1:84803418-84803437 None:intergenic 30.0%
!! GCATTTGTTGTAAGATCAAA+TGG + chr8_1:84803555-84803574 Msa1221250:CDS 30.0%
!!! TGAACTGAAGTGGTTTTAAT+TGG + chr8_1:84803825-84803844 Msa1221250:intron 30.0%
! ACTGCATTTTCATATGAAGT+TGG - chr8_1:84804016-84804035 None:intergenic 30.0%
GCAATTAATAGTACTCACAA+AGG - chr8_1:84804318-84804337 None:intergenic 30.0%
! ATTTGGCTTCAAACATTACA+TGG + chr8_1:84804459-84804478 Msa1221250:three_prime_UTR 30.0%
! TTTGGCTTCAAACATTACAT+GGG + chr8_1:84804460-84804479 Msa1221250:three_prime_UTR 30.0%
AAACATTACATGGGTTTACT+TGG + chr8_1:84804469-84804488 Msa1221250:three_prime_UTR 30.0%
GGAAGAACAAAAGAAAATGA+CGG - chr8_1:84804663-84804682 None:intergenic 30.0%
AAATTTCTTATGTTGCGGTT+TGG - chr8_1:84804842-84804861 None:intergenic 30.0%
TGGTAACATCAGTAGTTGTT+GGG - chr8_1:84798013-84798032 None:intergenic 35.0%
ATGGTAACATCAGTAGTTGT+TGG - chr8_1:84798014-84798033 None:intergenic 35.0%
AAATGTGAATGGTGGTAGTT+TGG - chr8_1:84798039-84798058 None:intergenic 35.0%
TTAGCTAAGTTTGGTTGATC+TGG - chr8_1:84798094-84798113 None:intergenic 35.0%
!! TGTTTTTGTTCTTGTTGTGG+AGG - chr8_1:84798176-84798195 None:intergenic 35.0%
! AACAGTATGAGTGTAATGGA+AGG - chr8_1:84798247-84798266 None:intergenic 35.0%
TGGAAACAGTATGAGTGTAA+TGG - chr8_1:84798251-84798270 None:intergenic 35.0%
TTACTATGTGGTATTCGTTC+TGG + chr8_1:84798914-84798933 Msa1221250:CDS 35.0%
ACCAATGCTAAAACAATTGG+TGG - chr8_1:84799028-84799047 None:intergenic 35.0%
TTGAACAAGCTGTTAAGGAT+AGG + chr8_1:84799128-84799147 Msa1221250:CDS 35.0%
CCCATTTCAAAATTGGGTTA+AGG + chr8_1:84799986-84800005 Msa1221250:intron 35.0%
!! GCCTTAACCCAATTTTGAAA+TGG - chr8_1:84799990-84800009 None:intergenic 35.0%
TGATATATGCTACAGGGATA+TGG + chr8_1:84800350-84800369 Msa1221250:intron 35.0%
GATATATGCTACAGGGATAT+GGG + chr8_1:84800351-84800370 Msa1221250:intron 35.0%
AATGCCAAGCTAATTGAAAG+TGG - chr8_1:84800392-84800411 None:intergenic 35.0%
! AATTAGCTTGGCATTTGCAA+AGG + chr8_1:84800397-84800416 Msa1221250:CDS 35.0%
AAACGCTGAGATGAAAATAG+TGG + chr8_1:84800463-84800482 Msa1221250:CDS 35.0%
!! AAAATAGTGGACACAGAAAC+TGG + chr8_1:84800476-84800495 Msa1221250:CDS 35.0%
!! ATTTCACCAGCTTTGTTTCT+TGG - chr8_1:84800512-84800531 None:intergenic 35.0%
GCTGGTGAAATTTGTATTAG+AGG + chr8_1:84800521-84800540 Msa1221250:CDS 35.0%
!! AATTTGTATTAGAGGCACCA+AGG + chr8_1:84800529-84800548 Msa1221250:CDS 35.0%
TGAGTGGAGCATATAAGAAT+AGG - chr8_1:84800573-84800592 None:intergenic 35.0%
! TATAAGTTGAGTGCAATGAG+TGG - chr8_1:84800589-84800608 None:intergenic 35.0%
!! AAGTAGATGATTTGGTTGAG+GGG + chr8_1:84800803-84800822 Msa1221250:intron 35.0%
AACACTTGTGTATGTACTGT+GGG - chr8_1:84800988-84801007 None:intergenic 35.0%
AAACACTTGTGTATGTACTG+TGG - chr8_1:84800989-84801008 None:intergenic 35.0%
ATCGTGTGTAAATCTGCTTT+CGG - chr8_1:84801019-84801038 None:intergenic 35.0%
TAACTGCCGATGAAGTTATA+TGG - chr8_1:84801090-84801109 None:intergenic 35.0%
! TGTCGTCGGTTAAAATTCAT+CGG - chr8_1:84801117-84801136 None:intergenic 35.0%
AAGACGTAAATGTTCATCGA+CGG - chr8_1:84801145-84801164 None:intergenic 35.0%
! GCACCTCATTTTCAATGATT+GGG + chr8_1:84801220-84801239 Msa1221250:intron 35.0%
ACTATATGCTCGTGAACAAT+TGG - chr8_1:84801246-84801265 None:intergenic 35.0%
GTTCACGAGCATATAGTATA+TGG + chr8_1:84801249-84801268 Msa1221250:intron 35.0%
TGGAGGGAACAGTTTATAAT+AGG + chr8_1:84801394-84801413 Msa1221250:intron 35.0%
!! ATCCCATGAGACTAGTTTAA+TGG + chr8_1:84801513-84801532 Msa1221250:intron 35.0%
!! TCCCATGAGACTAGTTTAAT+GGG + chr8_1:84801514-84801533 Msa1221250:intron 35.0%
! ACCCATTAAACTAGTCTCAT+GGG - chr8_1:84801518-84801537 None:intergenic 35.0%
! TACCCATTAAACTAGTCTCA+TGG - chr8_1:84801519-84801538 None:intergenic 35.0%
!!! CTAAGTCCCGTTTTTTCTTT+TGG - chr8_1:84801780-84801799 None:intergenic 35.0%
CAAAAGAAAAAACGGGACTT+AGG + chr8_1:84801778-84801797 Msa1221250:intron 35.0%
CGGCGAAAATAAATTAGGAT+TGG - chr8_1:84801824-84801843 None:intergenic 35.0%
ATGATGCATAGGTGAAGATT+AGG - chr8_1:84801867-84801886 None:intergenic 35.0%
! ATTGTGTTCTGATGATGCAT+AGG - chr8_1:84801878-84801897 None:intergenic 35.0%
!! AACTTCTAAAATAGCAGCTG+AGG + chr8_1:84802053-84802072 Msa1221250:intron 35.0%
!! ACTTCTAAAATAGCAGCTGA+GGG + chr8_1:84802054-84802073 Msa1221250:intron 35.0%
AAAGTATGCACAAATAAGGG+CGG - chr8_1:84802112-84802131 None:intergenic 35.0%
ACTGTAAGGTACATACAATC+TGG + chr8_1:84802172-84802191 Msa1221250:intron 35.0%
TAGATGCATTCATGCAGTTA+CGG + chr8_1:84802214-84802233 Msa1221250:intron 35.0%
TGTTTATAATCAGTGACGGT+AGG + chr8_1:84802380-84802399 Msa1221250:intron 35.0%
! CTTGTTTCTCCACTCATTAA+AGG + chr8_1:84802425-84802444 Msa1221250:intron 35.0%
ACTCACTACACTAATTCAAG+TGG + chr8_1:84802788-84802807 Msa1221250:intron 35.0%
CACAGCATAGTAAGTCTTTA+GGG - chr8_1:84803099-84803118 None:intergenic 35.0%
TCACAGCATAGTAAGTCTTT+AGG - chr8_1:84803100-84803119 None:intergenic 35.0%
GAACTATAGACAAAGAAGGA+TGG + chr8_1:84803154-84803173 Msa1221250:CDS 35.0%
AGATTGAAAGATGAAGTTGC+TGG + chr8_1:84803519-84803538 Msa1221250:intron 35.0%
GATCTTACAACAAATGCAAC+TGG - chr8_1:84803552-84803571 None:intergenic 35.0%
AAATGGTTCAAAGATCAGTG+AGG + chr8_1:84803572-84803591 Msa1221250:CDS 35.0%
CAAGCAATACATATCACAAC+AGG + chr8_1:84803602-84803621 Msa1221250:CDS 35.0%
TTAACTGCAAGACTTAACGA+AGG + chr8_1:84803938-84803957 Msa1221250:CDS 35.0%
TTAAGTCCATGTGACAAAGA+CGG + chr8_1:84803979-84803998 Msa1221250:exon 35.0%
! TGTGTCTTTTGTGTGCATAT+TGG + chr8_1:84804147-84804166 Msa1221250:three_prime_UTR 35.0%
ATCACATAAAGAAACCGCAT+GGG - chr8_1:84804178-84804197 None:intergenic 35.0%
AATCACATAAAGAAACCGCA+TGG - chr8_1:84804179-84804198 None:intergenic 35.0%
! GGGATTCACTAATTGGTAAT+TGG + chr8_1:84804261-84804280 Msa1221250:intron 35.0%
ATTGGCAGAATATGTAATGC+TGG + chr8_1:84804279-84804298 Msa1221250:intron 35.0%
! ATTGCATGTTTGGGCTTTTT+AGG + chr8_1:84804333-84804352 Msa1221250:intron 35.0%
CTTAGATCTGTTAGTCACAT+CGG + chr8_1:84804436-84804455 Msa1221250:three_prime_UTR 35.0%
TTAAACTTGACCTTTCGAAG+AGG - chr8_1:84804749-84804768 None:intergenic 35.0%
TTTAAAAGAAAGCCTGTCGT+CGG + chr8_1:84804764-84804783 Msa1221250:three_prime_UTR 35.0%
GAATGGTGGTAGTTTGGTTA+TGG - chr8_1:84798033-84798052 None:intergenic 40.0%
TTGATCTGGTGGAGCTAATT+TGG - chr8_1:84798080-84798099 None:intergenic 40.0%
CAATATCAGGGAGCTTAGAA+CGG - chr8_1:84798211-84798230 None:intergenic 40.0%
GACGGTTGTTGAATTGAGAA+AGG - chr8_1:84798277-84798296 None:intergenic 40.0%
AACCGTCAATGTCTCATCAA+CGG + chr8_1:84798290-84798309 Msa1221250:CDS 40.0%
!! GATTCCAAGAGTGTTTAGAC+CGG - chr8_1:84798375-84798394 None:intergenic 40.0%
AACACTCTTGGAATCCAACA+AGG + chr8_1:84798380-84798399 Msa1221250:CDS 40.0%
TCATGATGACATCACCTTGT+TGG - chr8_1:84798397-84798416 None:intergenic 40.0%
GTGCAAATTGAGGAGAGTTA+CGG - chr8_1:84798427-84798446 None:intergenic 40.0%
AAATCCCTTCTACACCTCAT+CGG + chr8_1:84798493-84798512 Msa1221250:CDS 40.0%
!!! GAGTTTAGTTTTTGTTGCGG+TGG - chr8_1:84798534-84798553 None:intergenic 40.0%
!! TGTGTGCATTGATTCGTCAT+CGG + chr8_1:84798619-84798638 Msa1221250:CDS 40.0%
CCAGAAGTTCCTGAAGAAAA+CGG - chr8_1:84798743-84798762 None:intergenic 40.0%
!! GGAACTTCTGGTTTACCTAA+AGG + chr8_1:84798752-84798771 Msa1221250:CDS 40.0%
! TCGTAGTTTGTGTATTGGTG+TGG - chr8_1:84798839-84798858 None:intergenic 40.0%
ACACCAATACACAAACTACG+AGG + chr8_1:84798838-84798857 Msa1221250:CDS 40.0%
! CATCCTCGTAGTTTGTGTAT+TGG - chr8_1:84798844-84798863 None:intergenic 40.0%
!!! GCCACCAATTGTTTTAGCAT+TGG + chr8_1:84799024-84799043 Msa1221250:CDS 40.0%
! TGTTCAAGTTCCATTCCCAT+GGG - chr8_1:84799115-84799134 None:intergenic 40.0%
! TTGTTCAAGTTCCATTCCCA+TGG - chr8_1:84799116-84799135 None:intergenic 40.0%
GGAACTTGAACAAGCTGTTA+AGG + chr8_1:84799123-84799142 Msa1221250:CDS 40.0%
GCCCCTACACTTAATATCTT+TGG - chr8_1:84799301-84799320 None:intergenic 40.0%
AAGATATTAAGTGTAGGGGC+CGG + chr8_1:84799301-84799320 Msa1221250:intron 40.0%
! GGAATTTGAAGTTCGAACTC+CGG - chr8_1:84799323-84799342 None:intergenic 40.0%
ACTTTATGTGTGGAGAAGTG+GGG - chr8_1:84799344-84799363 None:intergenic 40.0%
CACTTTATGTGTGGAGAAGT+GGG - chr8_1:84799345-84799364 None:intergenic 40.0%
ACACTTTATGTGTGGAGAAG+TGG - chr8_1:84799346-84799365 None:intergenic 40.0%
TAATAAATGATCGCGAGCGA+TGG + chr8_1:84799950-84799969 Msa1221250:intron 40.0%
AGGACCACTTTCAATTAGCT+TGG + chr8_1:84800385-84800404 Msa1221250:CDS 40.0%
!! ACCAGCTTTGTTTCTTGGAA+GGG - chr8_1:84800507-84800526 None:intergenic 40.0%
!! TGATCGATGATATGGTGGAT+TGG + chr8_1:84800909-84800928 Msa1221250:intron 40.0%
TGTGTAAATCTGCTTTCGGT+TGG - chr8_1:84801015-84801034 None:intergenic 40.0%
! CGCACCTCATTTTCAATGAT+TGG + chr8_1:84801219-84801238 Msa1221250:intron 40.0%
TGGCCCAATCATTGAAAATG+AGG - chr8_1:84801226-84801245 None:intergenic 40.0%
!! GAGACTAGTTTAATGGGTAG+AGG + chr8_1:84801520-84801539 Msa1221250:intron 40.0%
!! TGTAAAAGAATGGGCTGAGT+AGG + chr8_1:84801721-84801740 Msa1221250:intron 40.0%
! ATTAGGATTGGTGTAGTTGG+TGG - chr8_1:84801812-84801831 None:intergenic 40.0%
GTACACGTTTAGCACTACAA+TGG - chr8_1:84802085-84802104 None:intergenic 40.0%
AAGTATGCACAAATAAGGGC+GGG - chr8_1:84802111-84802130 None:intergenic 40.0%
TACAGTGCTTCTTACGCATA+AGG - chr8_1:84802158-84802177 None:intergenic 40.0%
!! TATGCGTAAGAAGCACTGTA+AGG + chr8_1:84802158-84802177 Msa1221250:intron 40.0%
AGATGCATTCATGCAGTTAC+GGG + chr8_1:84802215-84802234 Msa1221250:intron 40.0%
CACACATCACCTTTAATGAG+TGG - chr8_1:84802437-84802456 None:intergenic 40.0%
TTAGTGTAGTGAGTTAGGTG+AGG - chr8_1:84802782-84802801 None:intergenic 40.0%
AACACTGATATGGTTAGGTG+AGG - chr8_1:84802859-84802878 None:intergenic 40.0%
AGACTTACTATGCTGTGATC+AGG + chr8_1:84803102-84803121 Msa1221250:intron 40.0%
ATCAGGATACCTAAATGACC+CGG + chr8_1:84803119-84803138 Msa1221250:intron 40.0%
ATAGTTCTCTTTGTTGCCTC+CGG - chr8_1:84803141-84803160 None:intergenic 40.0%
ACAGCAGCATCAGAAATGTT+TGG - chr8_1:84803312-84803331 None:intergenic 40.0%
! GGAGTGTCAAGATGAGTTTA+AGG + chr8_1:84803671-84803690 Msa1221250:intron 40.0%
!!! AAGTGGTTTTAATTGGCTGC+AGG + chr8_1:84803832-84803851 Msa1221250:intron 40.0%
! ATTTTTCCTGAGGCAGCTTT+AGG - chr8_1:84803905-84803924 None:intergenic 40.0%
! CTTTCGCAGAATTTTTCCTG+AGG - chr8_1:84803915-84803934 None:intergenic 40.0%
CTCAGGAAAAATTCTGCGAA+AGG + chr8_1:84803913-84803932 Msa1221250:CDS 40.0%
TGTCACATGGACTTAATTCG+TGG - chr8_1:84803975-84803994 None:intergenic 40.0%
TTGTATCCGTCTTTGTCACA+TGG - chr8_1:84803988-84804007 None:intergenic 40.0%
TGCAGTTGCATATATATGCG+TGG + chr8_1:84804030-84804049 Msa1221250:three_prime_UTR 40.0%
CAATATCCGTTTCTGTACGT+GGG + chr8_1:84804104-84804123 Msa1221250:three_prime_UTR 40.0%
TATTCCTCTCCTGCTTGATA+GGG + chr8_1:84804239-84804258 Msa1221250:three_prime_UTR 40.0%
TGATAGGGGGATTCACTAAT+TGG + chr8_1:84804254-84804273 Msa1221250:intron 40.0%
CGATGTGACTAACAGATCTA+AGG - chr8_1:84804438-84804457 None:intergenic 40.0%
TCTGTTAGTCACATCGGATT+TGG + chr8_1:84804442-84804461 Msa1221250:three_prime_UTR 40.0%
CATTACATGGGTTTACTTGG+AGG + chr8_1:84804472-84804491 Msa1221250:three_prime_UTR 40.0%
!! TCTTATGTTGCGGTTTGGTT+TGG - chr8_1:84804837-84804856 None:intergenic 40.0%
CATCAGTAGTTGTTGGGACA+GGG - chr8_1:84798007-84798026 None:intergenic 45.0%
ACATCAGTAGTTGTTGGGAC+AGG - chr8_1:84798008-84798027 None:intergenic 45.0%
GCTAAGTTTGGTTGATCTGG+TGG - chr8_1:84798091-84798110 None:intergenic 45.0%
! TGTTCTTGTTGTGGAGGAGA+TGG - chr8_1:84798170-84798189 None:intergenic 45.0%
! GAGTGTAATGGAAGGTGTGT+TGG - chr8_1:84798239-84798258 None:intergenic 45.0%
CAAATTGAGGAGAGTTACGG+AGG - chr8_1:84798424-84798443 None:intergenic 45.0%
AGGAAGGTGAGTGCAAATTG+AGG - chr8_1:84798437-84798456 None:intergenic 45.0%
CAATTTGCACTCACCTTCCT+CGG + chr8_1:84798437-84798456 Msa1221250:CDS 45.0%
TGAGGTGTAGAAGGGATTTG+CGG - chr8_1:84798492-84798511 None:intergenic 45.0%
AGTTCCGATGAGGTGTAGAA+GGG - chr8_1:84798500-84798519 None:intergenic 45.0%
TTGTTTAGCCAGTTCCGATG+AGG - chr8_1:84798510-84798529 None:intergenic 45.0%
GTAACGCAACTACGTCGTTT+GGG - chr8_1:84798721-84798740 None:intergenic 45.0%
! GTTGCGTTACCGTTTTCTTC+AGG + chr8_1:84798731-84798750 Msa1221250:CDS 45.0%
! CCGTTTTCTTCAGGAACTTC+TGG + chr8_1:84798740-84798759 Msa1221250:CDS 45.0%
GAACTGTACTTGGACAGGTT+TGG + chr8_1:84799158-84799177 Msa1221250:intron 45.0%
CACCAGCTACTCGATTACTT+TGG - chr8_1:84800266-84800285 None:intergenic 45.0%
GAACCATTCAAGACAAAGCC+TGG + chr8_1:84800419-84800438 Msa1221250:CDS 45.0%
TCCCTTCCAAGAAACAAAGC+TGG + chr8_1:84800503-84800522 Msa1221250:CDS 45.0%
!! CACCAGCTTTGTTTCTTGGA+AGG - chr8_1:84800508-84800527 None:intergenic 45.0%
!! AGAGGCACCAAGGTTATGAA+AGG + chr8_1:84800539-84800558 Msa1221250:CDS 45.0%
!! TCGATGATATGGTGGATTGG+TGG + chr8_1:84800912-84800931 Msa1221250:intron 45.0%
!! ATGATATGGTGGATTGGTGG+TGG + chr8_1:84800915-84800934 Msa1221250:intron 45.0%
!! TGATATGGTGGATTGGTGGT+GGG + chr8_1:84800916-84800935 Msa1221250:intron 45.0%
TGTATGTACTGTGGGACTAC+GGG - chr8_1:84800980-84800999 None:intergenic 45.0%
GTGTATGTACTGTGGGACTA+CGG - chr8_1:84800981-84801000 None:intergenic 45.0%
TGCTGTTCGCACATAGTGTT+TGG + chr8_1:84801042-84801061 Msa1221250:intron 45.0%
!! GATTGGTGTAGTTGGTGGTT+GGG - chr8_1:84801807-84801826 None:intergenic 45.0%
CGTTTAGCACTACAATGGCT+TGG - chr8_1:84802080-84802099 None:intergenic 45.0%
ACGATCACAAATCTTGACCG+TGG + chr8_1:84802354-84802373 Msa1221250:intron 45.0%
CGATCACAAATCTTGACCGT+GGG + chr8_1:84802355-84802374 Msa1221250:intron 45.0%
! AGAAAAGGTGTGTGCACCAT+AGG + chr8_1:84802717-84802736 Msa1221250:intron 45.0%
TAGTGAGTTAGGTGAGGATG+TGG - chr8_1:84802776-84802795 None:intergenic 45.0%
TCAAGTGGACAAGTCCACAT+AGG + chr8_1:84802803-84802822 Msa1221250:intron 45.0%
GATATGGTTAGGTGAGGATG+TGG - chr8_1:84802853-84802872 None:intergenic 45.0%
TAGTTCTCTTTGTTGCCTCC+GGG - chr8_1:84803140-84803159 None:intergenic 45.0%
AAAGAAGGATGGCTACACAC+AGG + chr8_1:84803165-84803184 Msa1221250:CDS 45.0%
ACTATTCCTAAAGCTGCCTC+AGG + chr8_1:84803896-84803915 Msa1221250:CDS 45.0%
TGCAAGACTTAACGAAGGTC+TGG + chr8_1:84803943-84803962 Msa1221250:CDS 45.0%
GCAATATCCGTTTCTGTACG+TGG + chr8_1:84804103-84804122 Msa1221250:three_prime_UTR 45.0%
TTTGCACCCACGTACAGAAA+CGG - chr8_1:84804113-84804132 None:intergenic 45.0%
GCATATTGGATCAACCCATG+CGG + chr8_1:84804161-84804180 Msa1221250:three_prime_UTR 45.0%
TGATGATCCTGCGACTCAAT+AGG + chr8_1:84804214-84804233 Msa1221250:three_prime_UTR 45.0%
GAATAGTCCTATTGAGTCGC+AGG - chr8_1:84804224-84804243 None:intergenic 45.0%
CTATTCCTCTCCTGCTTGAT+AGG + chr8_1:84804238-84804257 Msa1221250:three_prime_UTR 45.0%
ATTCCTCTCCTGCTTGATAG+GGG + chr8_1:84804240-84804259 Msa1221250:three_prime_UTR 45.0%
CGTCGAATCTTCAGACAAAG+AGG - chr8_1:84804684-84804703 None:intergenic 45.0%
TTGTCTGAAGATTCGACGAC+TGG + chr8_1:84804686-84804705 Msa1221250:three_prime_UTR 45.0%
! AGTATTGAGTTTCCGACGAC+AGG - chr8_1:84804779-84804798 None:intergenic 45.0%
!! ATTATTACAAATAATATAAA+TGG + chr8_1:84800238-84800257 Msa1221250:intron 5.0%
!! TTATTACAAATAATATAAAT+GGG + chr8_1:84800239-84800258 Msa1221250:intron 5.0%
!!! TTTTTTATAATAATTTAACA+AGG + chr8_1:84800655-84800674 Msa1221250:intron 5.0%
!!! TAAAATTTTTGTTAAAAAAA+AGG + chr8_1:84802585-84802604 Msa1221250:intron 5.0%
!!! AAAATTTTTGTTAAAAAAAA+AGG + chr8_1:84802586-84802605 Msa1221250:intron 5.0%
TGTTGTGGAGGAGATGGAGA+TGG - chr8_1:84798164-84798183 None:intergenic 50.0%
! CGCCGTTGATGAGACATTGA+CGG - chr8_1:84798295-84798314 None:intergenic 50.0%
GGAGTACGTTAGGGTTTCTC+CGG - chr8_1:84798321-84798340 None:intergenic 50.0%
!! TCCAAGAGTGTTTAGACCGG+CGG - chr8_1:84798372-84798391 None:intergenic 50.0%
CAGTTCCGATGAGGTGTAGA+AGG - chr8_1:84798501-84798520 None:intergenic 50.0%
CTTCTACACCTCATCGGAAC+TGG + chr8_1:84798499-84798518 Msa1221250:CDS 50.0%
!! GTGCATTGATTCGTCATCGG+AGG + chr8_1:84798622-84798641 Msa1221250:CDS 50.0%
GGAGGAAGATGAACGTGTTG+TGG + chr8_1:84798640-84798659 Msa1221250:CDS 50.0%
GGTAACGCAACTACGTCGTT+TGG - chr8_1:84798722-84798741 None:intergenic 50.0%
!! ATAACTGGTGCTGCTCCCAT+GGG + chr8_1:84799097-84799116 Msa1221250:CDS 50.0%
AGGTTGCCACGAACTGTACT+TGG + chr8_1:84799148-84799167 Msa1221250:CDS 50.0%
ACCTGTCCAAGTACAGTTCG+TGG - chr8_1:84799157-84799176 None:intergenic 50.0%
AGCTGCGTTGGACTTGTGAT+AGG - chr8_1:84799265-84799284 None:intergenic 50.0%
GGCCAAAGTAATCGAGTAGC+TGG + chr8_1:84800261-84800280 Msa1221250:intron 50.0%
ACAGGGATATGGGATGACAG+AGG + chr8_1:84800361-84800380 Msa1221250:intron 50.0%
! GCACCAGGCTTTGTCTTGAA+TGG - chr8_1:84800425-84800444 None:intergenic 50.0%
AAGACAAAGCCTGGTGCATG+TGG + chr8_1:84800428-84800447 Msa1221250:CDS 50.0%
! TGAGGGGTCGTGTTTGAGAT+TGG + chr8_1:84800819-84800838 Msa1221250:intron 50.0%
!! GATATGGTGGATTGGTGGTG+GGG + chr8_1:84800917-84800936 Msa1221250:intron 50.0%
CATCGACGGTTAACTGTCGT+CGG - chr8_1:84801131-84801150 None:intergenic 50.0%
!! GGATTGGTGTAGTTGGTGGT+TGG - chr8_1:84801808-84801827 None:intergenic 50.0%
ATGCACAAATAAGGGCGGGT+GGG - chr8_1:84802107-84802126 None:intergenic 50.0%
TATGCACAAATAAGGGCGGG+TGG - chr8_1:84802108-84802127 None:intergenic 50.0%
GTGATCGTGCGAGATTAGAC+AGG - chr8_1:84802342-84802361 None:intergenic 50.0%
AGGATACCTAAATGACCCGG+AGG + chr8_1:84803122-84803141 Msa1221250:intron 50.0%
TTGTTGCCTCCGGGTCATTT+AGG - chr8_1:84803131-84803150 None:intergenic 50.0%
TGGCTACACACAGGTGACAT+TGG + chr8_1:84803174-84803193 Msa1221250:CDS 50.0%
AACAATGCTTCGAGCTCAGC+AGG - chr8_1:84803279-84803298 None:intergenic 50.0%
TTCCTCTCCTGCTTGATAGG+GGG + chr8_1:84804241-84804260 Msa1221250:three_prime_UTR 50.0%
AGTGAATCCCCCTATCAAGC+AGG - chr8_1:84804251-84804270 None:intergenic 50.0%
TGAAGATTCGACGACTGGCA+AGG + chr8_1:84804691-84804710 Msa1221250:three_prime_UTR 50.0%
CTTGACCTTTCGAAGAGGAG+AGG - chr8_1:84804744-84804763 None:intergenic 50.0%
TGTCTCATCAACGGCGACAC+CGG + chr8_1:84798299-84798318 Msa1221250:CDS 55.0%
GTGGACGTCGGAGTACGTTA+GGG - chr8_1:84798330-84798349 None:intergenic 55.0%
! TTAGACCGGCGGCGATTTTG+CGG - chr8_1:84798361-84798380 None:intergenic 55.0%
GGTGTAGAAGGGATTTGCGG+TGG - chr8_1:84798489-84798508 None:intergenic 55.0%
!! GATAACTGGTGCTGCTCCCA+TGG + chr8_1:84799096-84799115 Msa1221250:CDS 55.0%
GCCACGAACTGTACTTGGAC+AGG + chr8_1:84799153-84799172 Msa1221250:CDS 55.0%
CAAGTCCAACGCAGCTCACT+TGG + chr8_1:84799269-84799288 Msa1221250:intron 55.0%
AGCTACCAAGTGAGCTGCGT+TGG - chr8_1:84799277-84799296 None:intergenic 55.0%
GGATATGGGATGACAGAGGC+AGG + chr8_1:84800365-84800384 Msa1221250:CDS 55.0%
! GGGGTCGTGTTTGAGATTGG+TGG + chr8_1:84800822-84800841 Msa1221250:intron 55.0%
ATCCCCCTATCAAGCAGGAG+AGG - chr8_1:84804246-84804265 None:intergenic 55.0%
CACGCACTCTTCTGTCGTAG+AGG - chr8_1:84804627-84804646 None:intergenic 55.0%
! TACGACAGAAGAGTGCGTGC+TGG + chr8_1:84804628-84804647 Msa1221250:three_prime_UTR 55.0%
ACAGGCCTCTCCTCTTCGAA+AGG + chr8_1:84804736-84804755 Msa1221250:three_prime_UTR 55.0%
GGTGGACGTCGGAGTACGTT+AGG - chr8_1:84798331-84798350 None:intergenic 60.0%
! CGATTTTGCGGACGGTGAGG+TGG - chr8_1:84798349-84798368 None:intergenic 60.0%
GCCGCCGGTCTAAACACTCT+TGG + chr8_1:84798368-84798387 Msa1221250:CDS 60.0%
!! TGGTGCTGCTCCCATGGGAA+TGG + chr8_1:84799102-84799121 Msa1221250:CDS 60.0%
ACGACTGTGCCACATGCACC+AGG - chr8_1:84800440-84800459 None:intergenic 60.0%
CGAGCTCAGCAGGAGCTACT+TGG - chr8_1:84803269-84803288 None:intergenic 60.0%
! CGGCGATTTTGCGGACGGTG+AGG - chr8_1:84798352-84798371 None:intergenic 65.0%
ACCGTCCGCAAAATCGCCGC+CGG + chr8_1:84798353-84798372 Msa1221250:CDS 65.0%
! ACCGGCGGCGATTTTGCGGA+CGG - chr8_1:84798357-84798376 None:intergenic 65.0%
!! TTCCTCGGTGCCTCCTTCCG+CGG + chr8_1:84798452-84798471 Msa1221250:CDS 65.0%
GCGGACGGTGAGGTGGACGT+CGG - chr8_1:84798342-84798361 None:intergenic 70.0%
!! GCGGAAGGAGGCACCGAGGA+AGG - chr8_1:84798453-84798472 None:intergenic 70.0%
GATAACCGCGCCGCGGAAGG+AGG - chr8_1:84798465-84798484 None:intergenic 70.0%
GGTGATAACCGCGCCGCGGA+AGG - chr8_1:84798468-84798487 None:intergenic 70.0%
CGGTGGTGATAACCGCGCCG+CGG - chr8_1:84798472-84798491 None:intergenic 70.0%
!!! CGCCGCGGAAGGAGGCACCG+AGG - chr8_1:84798457-84798476 None:intergenic 80.0%
! CGGTGCCTCCTTCCGCGGCG+CGG + chr8_1:84798457-84798476 Msa1221250:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 84797965 84805017 84797965 ID=Msa1221250;Name=Msa1221250
chr8_1 mRNA 84797965 84805017 84797965 ID=Msa1221250-mRNA-1;Parent=Msa1221250;Name=Msa1221250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=190|1|1|1|0.8|0.66|6|943|553
chr8_1 exon 84797965 84799174 84797965 ID=Msa1221250-mRNA-1:exon:30462;Parent=Msa1221250-mRNA-1
chr8_1 exon 84800365 84800560 84800365 ID=Msa1221250-mRNA-1:exon:30463;Parent=Msa1221250-mRNA-1
chr8_1 exon 84803124 84803337 84803124 ID=Msa1221250-mRNA-1:exon:30464;Parent=Msa1221250-mRNA-1
chr8_1 exon 84803521 84803623 84803521 ID=Msa1221250-mRNA-1:exon:30465;Parent=Msa1221250-mRNA-1
chr8_1 exon 84803854 84804262 84803854 ID=Msa1221250-mRNA-1:exon:30466;Parent=Msa1221250-mRNA-1
chr8_1 exon 84804355 84805017 84804355 ID=Msa1221250-mRNA-1:exon:30467;Parent=Msa1221250-mRNA-1
chr8_1 five_prime_UTR 84797965 84798154 84797965 ID=Msa1221250-mRNA-1:five_prime_utr;Parent=Msa1221250-mRNA-1
chr8_1 CDS 84798155 84799174 84798155 ID=Msa1221250-mRNA-1:cds;Parent=Msa1221250-mRNA-1
chr8_1 CDS 84800365 84800560 84800365 ID=Msa1221250-mRNA-1:cds;Parent=Msa1221250-mRNA-1
chr8_1 CDS 84803124 84803337 84803124 ID=Msa1221250-mRNA-1:cds;Parent=Msa1221250-mRNA-1
chr8_1 CDS 84803521 84803623 84803521 ID=Msa1221250-mRNA-1:cds;Parent=Msa1221250-mRNA-1
chr8_1 CDS 84803854 84803982 84803854 ID=Msa1221250-mRNA-1:cds;Parent=Msa1221250-mRNA-1
chr8_1 three_prime_UTR 84803983 84804262 84803983 ID=Msa1221250-mRNA-1:three_prime_utr;Parent=Msa1221250-mRNA-1
chr8_1 three_prime_UTR 84804355 84805017 84804355 ID=Msa1221250-mRNA-1:three_prime_utr;Parent=Msa1221250-mRNA-1
Gene Sequence

>Msa1221250

ATGTTACCATCTCCATCTCCTCCACAACAAGAACAAAAACAAGAATTCATATTCCGTTCTAAGCTCCCTGATATTGAAATTCCAACACACCTTCCATTACACTCATACTGTTTCCAAAACCTTTCTCAATTCAACAACCGTCAATGTCTCATCAACGGCGACACCGGAGAAACCCTAACGTACTCCGACGTCCACCTCACCGTCCGCAAAATCGCCGCCGGTCTAAACACTCTTGGAATCCAACAAGGTGATGTCATCATGATCGTCCTCCGTAACTCTCCTCAATTTGCACTCACCTTCCTCGGTGCCTCCTTCCGCGGCGCGGTTATCACCACCGCAAATCCCTTCTACACCTCATCGGAACTGGCTAAACAAGCCACCGCAACAAAAACTAAACTCATCGTCACACAATCAGCATATCTCAATAAAATCAACGATTTCGCAAAACTCAACGACATCAAAATTGTGTGCATTGATTCGTCATCGGAGGAAGATGAACGTGTTGTGGATTTTTCTGTTTTAACAAATGCTGATGAAAACGAATTACCAGAAGTTAAAATAAACCCAAACGACGTAGTTGCGTTACCGTTTTCTTCAGGAACTTCTGGTTTACCTAAAGGTGTTATGTTAACACATGAAAATTTAGTTACAACAATATCACAGTTAGTTGACGGTGAAAATCCACACCAATACACAAACTACGAGGATGTCTTACTCTGTGTGTTACCTATGTTTCATATCTATGCACTAAATTCGATTTTACTATGTGGTATTCGTTCTGGTGCTGCTGTTTTAATTGTTGAGAAATTTGAGATAACTAAGGTTTTGGAACTTATTGAAAAGTATAAGGTGACGGTAGCGTCGTTTGTGCCACCAATTGTTTTAGCATTGGTAAAAAGTGGGGAATCTATGAGATACGATTTGTCGTCTATTAGAGTGATGATAACTGGTGCTGCTCCCATGGGAATGGAACTTGAACAAGCTGTTAAGGATAGGTTGCCACGAACTGTACTTGGACAGGGATATGGGATGACAGAGGCAGGACCACTTTCAATTAGCTTGGCATTTGCAAAGGAACCATTCAAGACAAAGCCTGGTGCATGTGGCACAGTCGTCAGAAACGCTGAGATGAAAATAGTGGACACAGAAACTGGTGCTTCCCTTCCAAGAAACAAAGCTGGTGAAATTTGTATTAGAGGCACCAAGGTTATGAAAGGATACCTAAATGACCCGGAGGCAACAAAGAGAACTATAGACAAAGAAGGATGGCTACACACAGGTGACATTGGTTTAATTGACGACGATGATGAACTCTTCATTGTTGATCGGTTGAAAGAATTGATTAAATACAAAGGATACCAAGTAGCTCCTGCTGAGCTCGAAGCATTGTTGATTGCTCATCCAAACATTTCTGATGCTGCTGTCGTACCATTGAAAGATGAAGTTGCTGGAGAAGTTCCAGTTGCATTTGTTGTAAGATCAAATGGTTCAAAGATCAGTGAGGATGAAATCAAGCAATACATATCACAACAGGTTGTATTTTACAAGAGAATAAACAGAGTTTACTTCACAGAAACTATTCCTAAAGCTGCCTCAGGAAAAATTCTGCGAAAGGAATTAACTGCAAGACTTAACGAAGGTCTGGTAGTTGCCACGAATTAA
Protein sequence

>Msa1221250

MLPSPSPPQQEQKQEFIFRSKLPDIEIPTHLPLHSYCFQNLSQFNNRQCLINGDTGETLTYSDVHLTVRKIAAGLNTLGIQQGDVIMIVLRNSPQFALTFLGASFRGAVITTANPFYTSSELAKQATATKTKLIVTQSAYLNKINDFAKLNDIKIVCIDSSSEEDERVVDFSVLTNADENELPEVKINPNDVVALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNYEDVLLCVLPMFHIYALNSILLCGIRSGAAVLIVEKFEITKVLELIEKYKVTVASFVPPIVLALVKSGESMRYDLSSIRVMITGAAPMGMELEQAVKDRLPRTVLGQGYGMTEAGPLSISLAFAKEPFKTKPGACGTVVRNAEMKIVDTETGASLPRNKAGEICIRGTKVMKGYLNDPEATKRTIDKEGWLHTGDIGLIDDDDELFIVDRLKELIKYKGYQVAPAELEALLIAHPNISDAAVVPLKDEVAGEVPVAFVVRSNGSKISEDEIKQYISQQVVFYKRINRVYFTETIPKAASGKILRKELTARLNEGLVVATN*