AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334030 MtrunA17_Chr4g0072561 98.723 548 7 0 1 548 1 548 0.0 1112
Msa1334030 MtrunA17_Chr4g0000461 66.667 543 173 5 10 548 4 542 0.0 737
Msa1334030 MtrunA17_Chr5g0395431 61.278 532 199 3 17 544 55 583 0.0 695
Msa1334030 MtrunA17_Chr2g0334131 70.922 282 80 2 269 548 3 284 1.81e-143 415
Msa1334030 MtrunA17_Chr4g0028411 41.996 531 300 5 17 543 11 537 3.70e-142 421
Msa1334030 MtrunA17_Chr2g0327341 41.588 529 296 7 17 540 11 531 1.67e-137 409
Msa1334030 MtrunA17_Chr3g0102411 37.956 548 326 6 12 554 9 547 1.78e-132 397
Msa1334030 MtrunA17_Chr1g0180551 43.173 542 279 13 18 540 82 613 3.49e-126 383
Msa1334030 MtrunA17_Chr1g0180541 41.098 528 296 9 25 542 20 542 1.24e-124 377
Msa1334030 MtrunA17_Chr1g0157401 39.024 533 310 6 17 540 26 552 3.61e-124 376
Msa1334030 MtrunA17_Chr1g0197391 39.469 527 294 9 26 540 45 558 1.03e-116 357
Msa1334030 MtrunA17_Chr5g0409771 37.291 539 324 10 8 540 17 547 8.70e-113 346
Msa1334030 MtrunA17_Chr8g0353341 37.891 512 293 7 17 511 23 526 2.33e-109 337
Msa1334030 MtrunA17_Chr4g0039791 39.630 487 282 9 68 548 81 561 3.48e-109 337
Msa1334030 MtrunA17_Chr5g0409791 38.247 502 278 11 68 548 78 568 3.15e-106 330
Msa1334030 MtrunA17_Chr3g0116271 37.008 508 288 9 45 540 63 550 4.14e-100 313
Msa1334030 MtrunA17_Chr3g0116251 36.040 505 294 8 45 540 64 548 1.45e-96 304
Msa1334030 MtrunA17_Chr1g0186071 37.037 513 304 8 35 544 56 552 4.32e-95 301
Msa1334030 MtrunA17_Chr2g0334121 58.621 203 80 3 10 208 5 207 1.06e-79 249
Msa1334030 MtrunA17_Chr6g0471921 31.288 489 312 14 59 538 32 505 1.66e-56 197
Msa1334030 MtrunA17_Chr5g0433241 29.245 530 320 18 44 537 27 537 2.48e-51 184
Msa1334030 MtrunA17_Chr1g0157431 30.211 331 218 5 17 338 26 352 7.90e-44 163
Msa1334030 MtrunA17_Chr3g0109731 26.753 542 340 14 42 543 25 549 1.09e-43 164
Msa1334030 MtrunA17_Chr5g0433231 28.759 532 327 17 44 540 27 541 5.99e-43 161
Msa1334030 MtrunA17_Chr5g0396311 27.220 518 332 17 44 534 27 526 2.48e-38 148
Msa1334030 MtrunA17_Chr5g0433221 27.458 539 325 19 44 540 27 541 1.04e-37 146
Msa1334030 MtrunA17_Chr2g0301671 27.339 545 347 17 46 554 35 566 1.88e-37 145
Msa1334030 MtrunA17_Chr5g0396331 25.516 533 338 18 44 543 27 533 1.04e-36 143
Msa1334030 MtrunA17_Chr4g0068151 26.816 537 341 17 47 546 36 557 1.14e-34 137
Msa1334030 MtrunA17_Chr4g0028451 56.075 107 38 1 406 512 10 107 6.25e-34 124
Msa1334030 MtrunA17_Chr6g0471311 29.781 366 229 13 191 540 190 543 8.00e-34 135
Msa1334030 MtrunA17_Chr7g0252691 24.427 524 346 15 58 540 205 719 1.92e-32 132
Msa1334030 MtrunA17_Chr8g0370701 24.206 504 337 14 61 535 84 571 1.52e-30 126
Msa1334030 MtrunA17_Chr2g0292471 25.952 578 344 23 37 554 7 560 1.55e-30 125
Msa1334030 MtrunA17_Chr5g0406681 22.478 565 391 16 1 535 9 556 7.74e-28 117
Msa1334030 MtrunA17_Chr1g0205711 24.686 478 282 17 51 465 106 568 6.97e-27 115
Msa1334030 MtrunA17_Chr8g0370731 26.265 415 262 13 148 537 89 484 1.79e-26 113
Msa1334030 MtrunA17_Chr7g0270221 27.072 543 296 21 50 527 66 573 2.67e-25 110
Msa1334030 MtrunA17_Chr1g0194371 25.540 556 298 24 50 512 66 598 2.16e-24 107
Msa1334030 MtrunA17_Chr1g0160041 25.487 565 326 18 57 546 106 650 4.39e-24 106
Msa1334030 MtrunA17_Chr4g0004101 25.926 324 201 10 246 540 10 323 6.50e-24 102
Msa1334030 MtrunA17_Chr4g0004841 29.078 282 161 11 285 540 64 332 2.85e-22 98.2
Msa1334030 MtrunA17_Chr8g0388081 25.761 493 276 18 46 465 3 478 3.75e-20 94.4
Msa1334030 MtrunA17_Chr3g0120731 23.663 486 282 17 57 464 135 609 7.77e-20 93.6
Msa1334030 MtrunA17_Chr5g0396691 23.993 546 304 25 18 475 27 549 8.33e-20 93.2
Msa1334030 MtrunA17_Chr3g0121931 30.303 198 111 4 338 512 475 668 2.60e-18 88.6
Msa1334030 MtrunA17_Chr5g0396711 24.762 525 278 24 40 475 53 549 4.51e-18 87.8
Msa1334030 MtrunA17_Chr4g0033141 25.416 421 257 18 173 546 661 1071 8.81e-18 87.8
Msa1334030 MtrunA17_Chr8g0377991 39.394 132 65 4 341 461 481 608 2.51e-17 85.5
Msa1334030 MtrunA17_Chr3g0121951 29.798 198 111 5 338 512 471 663 9.90e-17 83.6
Msa1334030 MtrunA17_Chr3g0124631 25.101 247 157 9 311 546 423 652 3.38e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334030 AT3G21240.1 66.179 547 175 5 9 548 11 554 0.0 738
Msa1334030 AT1G51680.1 65.185 540 182 2 15 548 22 561 0.0 706
Msa1334030 AT3G21230.1 61.172 546 201 3 9 544 20 564 0.0 673
Msa1334030 AT1G65060.1 59.510 531 208 4 17 544 34 560 0.0 664
Msa1334030 AT1G51680.3 64.484 504 173 2 15 512 22 525 0.0 650
Msa1334030 AT3G21240.2 65.053 475 156 5 9 476 11 482 0.0 630
Msa1334030 AT3G21240.3 65.053 475 156 5 9 476 11 482 0.0 630
Msa1334030 AT3G21230.3 60.000 525 195 4 9 523 20 539 0.0 630
Msa1334030 AT1G51680.2 64.744 468 159 2 15 476 22 489 0.0 602
Msa1334030 AT3G21230.2 60.669 478 177 3 9 476 20 496 0.0 580
Msa1334030 AT1G65060.2 57.301 452 186 4 17 465 34 481 0.0 541
Msa1334030 AT3G21230.4 56.127 408 168 3 9 406 20 426 5.11e-153 446
Msa1334030 AT4G05160.1 42.385 545 282 8 17 544 11 540 5.44e-145 429
Msa1334030 AT1G20510.1 38.563 529 310 6 18 540 17 536 5.43e-120 365
Msa1334030 AT1G20480.1 39.252 535 306 7 17 541 33 558 5.63e-119 363
Msa1334030 AT1G62940.1 36.949 544 324 6 9 544 4 536 1.04e-113 348
Msa1334030 AT4G19010.1 34.727 550 347 7 6 549 20 563 3.16e-113 348
Msa1334030 AT1G20500.1 35.568 537 325 7 13 540 18 542 1.09e-108 336
Msa1334030 AT5G63380.1 38.800 500 281 11 50 541 69 551 1.91e-108 335
Msa1334030 AT5G38120.1 34.502 542 313 10 18 540 24 542 1.61e-99 312
Msa1334030 AT1G20510.2 37.259 467 276 7 18 477 17 473 5.94e-96 300
Msa1334030 AT5G38120.3 33.398 515 301 10 18 513 24 515 1.54e-88 283
Msa1334030 AT1G20510.3 35.281 445 271 7 18 455 17 451 5.70e-82 264
Msa1334030 AT5G38120.4 33.194 479 278 10 18 477 24 479 7.40e-79 256
Msa1334030 AT5G38120.2 33.194 479 278 10 18 477 24 479 7.40e-79 256
Msa1334030 AT1G20490.2 29.812 426 270 7 13 424 18 428 4.59e-60 206
Msa1334030 AT1G20490.1 29.812 426 270 7 13 424 18 428 4.59e-60 206
Msa1334030 AT1G77240.1 29.222 527 321 17 42 535 25 532 8.06e-54 191
Msa1334030 AT3G48990.1 30.943 488 315 13 59 538 31 504 1.79e-53 189
Msa1334030 AT1G21540.1 28.051 549 344 18 22 535 5 537 2.31e-50 182
Msa1334030 AT1G21530.2 27.829 539 321 19 44 535 19 536 1.39e-47 174
Msa1334030 AT5G16340.1 28.119 505 324 14 60 537 42 534 6.23e-47 172
Msa1334030 AT1G21530.1 27.933 537 321 19 44 535 19 534 2.12e-46 171
Msa1334030 AT5G16370.1 26.705 528 337 16 60 554 42 552 2.08e-44 166
Msa1334030 AT1G66120.1 28.464 534 326 19 44 540 27 541 6.44e-44 164
Msa1334030 AT1G75960.1 28.460 513 318 15 60 540 42 537 6.04e-42 158
Msa1334030 AT1G65890.1 27.425 536 336 19 44 540 27 548 3.42e-41 157
Msa1334030 AT1G20560.1 27.068 532 335 16 43 537 20 535 9.46e-41 155
Msa1334030 AT1G65880.1 27.737 548 320 22 44 540 27 549 2.19e-40 154
Msa1334030 AT3G16910.1 27.273 539 337 18 47 546 38 560 2.08e-38 149
Msa1334030 AT1G76290.1 26.454 533 350 17 44 552 27 541 5.06e-37 144
Msa1334030 AT3G16170.1 25.349 501 319 14 78 544 125 604 1.03e-36 144
Msa1334030 AT1G68270.1 25.000 544 324 20 44 548 27 525 9.42e-34 135
Msa1334030 AT1G20560.2 26.981 467 296 14 101 537 6 457 1.68e-33 133
Msa1334030 AT1G30520.2 26.054 522 319 16 68 540 42 545 4.10e-32 130
Msa1334030 AT1G30520.1 26.054 522 319 16 68 540 42 545 4.10e-32 130
Msa1334030 AT5G36880.6 22.989 522 356 12 58 540 147 661 7.30e-28 119
Msa1334030 AT5G36880.3 22.989 522 356 12 58 540 147 661 7.30e-28 119
Msa1334030 AT5G36880.5 22.989 522 356 12 58 540 147 661 7.30e-28 119
Msa1334030 AT5G36880.1 22.989 522 356 12 58 540 147 661 7.30e-28 119
Msa1334030 AT5G36880.2 22.989 522 356 12 58 540 197 711 8.88e-28 118
Msa1334030 AT3G05970.1 25.617 527 293 17 10 461 65 567 3.70e-27 116
Msa1334030 AT5G27600.1 25.988 481 262 19 52 461 110 567 1.25e-26 115
Msa1334030 AT2G17650.1 24.365 591 374 24 2 546 36 599 3.07e-26 113
Msa1334030 AT1G64400.1 26.572 493 268 18 46 463 65 538 7.41e-25 109
Msa1334030 AT4G11030.1 24.797 492 262 19 52 461 71 536 2.26e-23 104
Msa1334030 AT4G23850.1 23.827 533 299 21 17 463 27 538 4.03e-23 103
Msa1334030 AT1G30520.3 25.701 428 265 13 68 460 42 451 9.78e-23 102
Msa1334030 AT1G30520.4 25.701 428 265 13 68 460 42 451 9.78e-23 102
Msa1334030 AT1G77590.1 24.390 492 287 18 57 475 105 584 2.53e-22 101
Msa1334030 AT2G47240.1 25.314 478 287 16 60 475 78 547 8.22e-21 97.1
Msa1334030 AT2G47240.2 25.314 478 287 16 60 475 78 547 8.22e-21 97.1
Msa1334030 AT2G47240.3 25.314 478 287 16 60 475 78 547 8.22e-21 97.1
Msa1334030 AT2G47240.4 25.314 478 287 16 60 475 19 488 8.77e-21 96.7
Msa1334030 AT2G04350.2 23.819 487 274 19 60 464 131 602 3.62e-20 95.1
Msa1334030 AT2G04350.1 23.819 487 274 19 60 464 131 602 3.62e-20 95.1
Msa1334030 AT5G36880.4 21.861 462 318 11 58 483 147 601 5.83e-20 94.0
Msa1334030 AT1G77590.2 24.944 449 252 18 100 475 2 438 1.05e-19 93.2
Msa1334030 AT3G23790.1 43.478 92 48 1 341 432 479 566 4.66e-15 79.0
Msa1334030 AT4G14070.1 38.542 96 55 1 337 432 491 582 1.09e-13 74.7
Msa1334030 AT5G35930.1 22.326 430 259 13 165 552 80 476 1.39e-12 71.2
Msa1334030 AT5G35930.4 22.326 430 259 13 165 552 172 568 1.42e-12 71.2

Find 157 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTAATGTTTCAAGCTTAT+AGG 0.224324 8_4:-54319496 None:intergenic
ATTTCACCAGCTTTGTTTCT+TGG 0.226424 8_4:-54315444 None:intergenic
TTGATCTGGTGGAGCTAATT+TGG 0.241525 8_4:-54313013 None:intergenic
TGTTGAATTGAGAAAGGTTT+TGG 0.256297 8_4:-54313204 None:intergenic
ATTTGAGATAACTAAGGTTT+TGG 0.266861 8_4:+54313897 Msa1334030:CDS
GGAACTTATTGAAAAGTATA+AGG 0.267484 8_4:+54313918 Msa1334030:CDS
TGATATATGCTACAGGGATA+TGG 0.268872 8_4:+54315285 Msa1334030:intron
TATATTGATTTAGCTAAGTT+TGG 0.291597 8_4:-54313036 None:intergenic
TTGTTGCCTCCGGGTCATTT+AGG 0.297187 8_4:-54318067 None:intergenic
CTATTCCTCTCCTGCTTGAT+AGG 0.297419 8_4:+54319175 Msa1334030:three_prime_UTR
TGTGTTGGAATTTCAATATC+AGG 0.302738 8_4:-54313157 None:intergenic
GCTGGTGAAATTTGTATTAG+AGG 0.314435 8_4:+54315456 Msa1334030:CDS
TTACTATGTGGTATTCGTTC+TGG 0.314962 8_4:+54313850 Msa1334030:CDS
TCTGTTAGTCACATCGGATT+TGG 0.317783 8_4:+54319384 Msa1334030:three_prime_UTR
TTTCAGACGTGTGAATAATA+TGG 0.330933 8_4:+54312913 Msa1334030:five_prime_UTR
TGTGTTAACATAACACCTTT+AGG 0.340407 8_4:-54313703 None:intergenic
TTTACCAATGCTAAAACAAT+TGG 0.354078 8_4:-54313964 None:intergenic
GGTGGACGTCGGAGTAGGTT+AGG 0.360550 8_4:-54313264 None:intergenic
ATAGTTCTCTTTGTTGCCTC+CGG 0.363221 8_4:-54318077 None:intergenic
CAGTTCCGATGAGGTGTAGA+AGG 0.365975 8_4:-54313434 None:intergenic
GATCTTACAACAAATGCAAC+TGG 0.374775 8_4:-54318488 None:intergenic
TTAGCTAAGTTTGGTTGATC+TGG 0.387535 8_4:-54313027 None:intergenic
CGATGTGACTAACAGATCTA+AGG 0.390166 8_4:-54319377 None:intergenic
GGTAACGCAACTACGTCGTT+TGG 0.393743 8_4:-54313655 None:intergenic
AAATGTGAATGGTGGTAGTT+TGG 0.404904 8_4:-54312972 None:intergenic
TGATGATCCTGCGACTCAAT+AGG 0.405357 8_4:+54319151 Msa1334030:three_prime_UTR
TCTATTAGAGTGATGATAAC+TGG 0.408293 8_4:+54314018 Msa1334030:CDS
TCATGATGACATCACCTTGT+TGG 0.412338 8_4:-54313330 None:intergenic
GCACCAGGCTTTGTCTTGAA+TGG 0.415126 8_4:-54315357 None:intergenic
GCATTTGTTGTAAGATCAAA+TGG 0.425802 8_4:+54318494 Msa1334030:CDS
GGAACTTGAACAAGCTGTTA+AGG 0.429990 8_4:+54314059 Msa1334030:CDS
AAAATAGTGGACACAGAAAC+TGG 0.432799 8_4:+54315411 Msa1334030:CDS
CAATTTGCACTCACCTTCCT+CGG 0.434193 8_4:+54313373 Msa1334030:CDS
TATTCCTCTCCTGCTTGATA+GGG 0.434627 8_4:+54319176 Msa1334030:three_prime_UTR
GTAACGCAACTACGTCGTTT+GGG 0.435729 8_4:-54313654 None:intergenic
CTTCTACACCTCATCGGAAC+TGG 0.437378 8_4:+54313435 Msa1334030:CDS
GGAACTTCTGGTTTACCTAA+AGG 0.438411 8_4:+54313688 Msa1334030:CDS
AACAATGCTTCGAGCTCAGC+AGG 0.444462 8_4:-54318215 None:intergenic
GAATGGTGGTAGTTTGGTTA+TGG 0.447348 8_4:-54312966 None:intergenic
AGATTGAAAGATGAAGTTGC+TGG 0.447703 8_4:+54318458 Msa1334030:intron
TAGTTCTCTTTGTTGCCTCC+GGG 0.451441 8_4:-54318076 None:intergenic
CATCCTCGTAGTTTGTGTAT+TGG 0.452212 8_4:-54313777 None:intergenic
ACCAATGCTAAAACAATTGG+TGG 0.453202 8_4:-54313961 None:intergenic
ACAGCAGCATCAGAAATGTT+TGG 0.455191 8_4:-54318248 None:intergenic
CGAGCTCAGCAGGAGCTACT+TGG 0.455494 8_4:-54318205 None:intergenic
TGTTCTTGTTGTGGAGGAGA+TGG 0.455920 8_4:-54313103 None:intergenic
GATATATGCTACAGGGATAT+GGG 0.456211 8_4:+54315286 Msa1334030:intron
TGAGAAATTTGAGATAACTA+AGG 0.461484 8_4:+54313891 Msa1334030:CDS
CACCAGCTTTGTTTCTTGGA+AGG 0.461904 8_4:-54315440 None:intergenic
GTGGACGTCGGAGTAGGTTA+GGG 0.462328 8_4:-54313263 None:intergenic
AGGACCACTTTCAATTAGCT+TGG 0.474310 8_4:+54315320 Msa1334030:CDS
TGGTAACATCAGTAGTTGTT+GGG 0.474435 8_4:-54312946 None:intergenic
GCCACGAACTGTACTTGGAC+AGG 0.475082 8_4:+54314089 Msa1334030:CDS
ATGGTAACATCAGTAGTTGT+TGG 0.475192 8_4:-54312947 None:intergenic
GCTAAGTTTGGTTGATCTGG+TGG 0.475678 8_4:-54313024 None:intergenic
TGGAAACAGTATGAGTGTAA+TGG 0.478337 8_4:-54313184 None:intergenic
TGCAAGACTTAACGAAGGTC+TGG 0.478614 8_4:+54318882 Msa1334030:CDS
GACGGTTGTTGAATTGAGAA+AGG 0.479714 8_4:-54313210 None:intergenic
GCCGCCGGTCTAAACACTCT+TGG 0.487351 8_4:+54313304 Msa1334030:CDS
TTGTTCAAGTTCCATTCCCA+TGG 0.491121 8_4:-54314049 None:intergenic
ATGAATACCTTTCATAACCT+TGG 0.495694 8_4:-54315481 None:intergenic
CAAGCAATACATATCACAAC+AGG 0.497758 8_4:+54318541 Msa1334030:CDS
GATAACTGGTGCTGCTCCCA+TGG 0.499661 8_4:+54314032 Msa1334030:CDS
ACCTGTCCAAGTACAGTTCG+TGG 0.500239 8_4:-54314090 None:intergenic
ACCAGCTTTGTTTCTTGGAA+GGG 0.507882 8_4:-54315439 None:intergenic
AGGTTGCCACGAACTGTACT+TGG 0.509307 8_4:+54314084 Msa1334030:CDS
TGGTGCTGCTCCCATGGGAA+TGG 0.513144 8_4:+54314038 Msa1334030:CDS
ACATCAGTAGTTGTTGGGAC+AGG 0.513453 8_4:-54312941 None:intergenic
TTGTCTGAAGATTCGACGAC+TGG 0.517719 8_4:+54319616 Msa1334030:three_prime_UTR
AAACGCTGAGATGAAAATAG+TGG 0.520930 8_4:+54315398 Msa1334030:CDS
GCGGAAGGAGGCACCGAGGA+AGG 0.521219 8_4:-54313386 None:intergenic
GAATAGTCCTATTGAGTCGC+AGG 0.523557 8_4:-54319158 None:intergenic
GAGTGTAATGGAAGGTGTGT+TGG 0.523918 8_4:-54313172 None:intergenic
CCAGAAGTTCCTGAAGAAAA+CGG 0.526342 8_4:-54313676 None:intergenic
TACGACAGAAGAGTGCGTGC+TGG 0.529137 8_4:+54319558 Msa1334030:three_prime_UTR
GAACCATTCAAGACAAAGCC+TGG 0.529977 8_4:+54315354 Msa1334030:CDS
AATTAGCTTGGCATTTGCAA+AGG 0.531695 8_4:+54315332 Msa1334030:CDS
TTGAACAAGCTGTTAAGGAT+AGG 0.537257 8_4:+54314064 Msa1334030:CDS
TTCCTCTCCTGCTTGATAGG+GGG 0.542652 8_4:+54319178 Msa1334030:three_prime_UTR
TCCCTTCCAAGAAACAAAGC+TGG 0.544071 8_4:+54315438 Msa1334030:CDS
GGAGTAGGTTAGGGTTTCTC+CGG 0.544325 8_4:-54313254 None:intergenic
ACAATATCACAGTTAGTTGA+CGG 0.544955 8_4:+54313742 Msa1334030:CDS
ACTATTCCTAAAGCTGCCTC+AGG 0.548272 8_4:+54318835 Msa1334030:CDS
TCCGTCTTTAATTTGTCACA+TGG 0.548546 8_4:-54318917 None:intergenic
TCGTAGTTTGTGTATTGGTG+TGG 0.549665 8_4:-54313772 None:intergenic
ACGACTGTGCCACATGCACC+AGG 0.550955 8_4:-54315372 None:intergenic
ATGAACTCTTCATTGTTGAT+CGG 0.551788 8_4:+54318153 Msa1334030:CDS
GTGCAAATTGAGGAGAGTTA+CGG 0.552408 8_4:-54313360 None:intergenic
GCAATATCCGTTTCTGTACG+TGG 0.552778 8_4:+54319040 Msa1334030:three_prime_UTR
TGTCTCATCAACGGCGACAC+CGG 0.555481 8_4:+54313235 Msa1334030:CDS
TTTGCACCCACGTACAGAAA+CGG 0.556292 8_4:-54319047 None:intergenic
AGGAAGGTGAGTGCAAATTG+AGG 0.559768 8_4:-54313370 None:intergenic
TGGCTACACACAGGTGACAT+TGG 0.562833 8_4:+54318113 Msa1334030:CDS
AAGAGAACTATAGACAAAGA+AGG 0.563429 8_4:+54318089 Msa1334030:CDS
ATTCCTCTCCTGCTTGATAG+GGG 0.565293 8_4:+54319177 Msa1334030:three_prime_UTR
GTGTTGGAATTTCAATATCA+GGG 0.565424 8_4:-54313156 None:intergenic
AAAGAATTGATTAAATACAA+AGG 0.566099 8_4:+54318179 Msa1334030:CDS
GGAGGAAGATGAACGTGTTG+TGG 0.569868 8_4:+54313576 Msa1334030:CDS
GGAAGAACAAAAGAAAATGA+CGG 0.571988 8_4:-54319590 None:intergenic
AATGCCAAGCTAATTGAAAG+TGG 0.574861 8_4:-54315324 None:intergenic
AGTGCATAGATATGAAACAT+AGG 0.575430 8_4:-54313817 None:intergenic
CAATATCAGGGAGCTTAGAA+CGG 0.576024 8_4:-54313144 None:intergenic
ACAACACGTTCATCTTCCTC+CGG 0.578234 8_4:-54313574 None:intergenic
TGAGGTGTAGAAGGGATTTG+CGG 0.578595 8_4:-54313425 None:intergenic
TGTTCAAGTTCCATTCCCAT+GGG 0.583375 8_4:-54314048 None:intergenic
ACCGTCCGCAAAATCGCCGC+CGG 0.583860 8_4:+54313289 Msa1334030:CDS
GATAACCGCGCCGCGGAAGG+AGG 0.585502 8_4:-54313398 None:intergenic
TGAAGATTCGACGACTGGCA+AGG 0.587018 8_4:+54319621 Msa1334030:three_prime_UTR
AAGACAAAGCCTGGTGCATG+TGG 0.587138 8_4:+54315363 Msa1334030:CDS
GGTGAGGTGGACGTCGGAGT+AGG 0.587685 8_4:-54313269 None:intergenic
GGATATGGGATGACAGAGGC+AGG 0.587842 8_4:+54315300 Msa1334030:CDS
ACAGGCCTCTCCTCTTCGAA+AGG 0.588917 8_4:+54319666 Msa1334030:three_prime_UTR
GATTCCAAGAGTGTTTAGAC+CGG 0.589374 8_4:-54313308 None:intergenic
CATCAGTAGTTGTTGGGACA+GGG 0.590035 8_4:-54312940 None:intergenic
TGTGTGCATTGATTCGTCAC+CGG 0.590622 8_4:+54313555 Msa1334030:CDS
CTTAGATCTGTTAGTCACAT+CGG 0.590730 8_4:+54319378 Msa1334030:three_prime_UTR
CGTCGAATCTTCAGACAAAG+AGG 0.592864 8_4:-54319611 None:intergenic
GTGTCGCCGTTGATGAGACA+TGG 0.596318 8_4:-54313232 None:intergenic
ATAACTGGTGCTGCTCCCAT+GGG 0.598182 8_4:+54314033 Msa1334030:CDS
TCCAAGAGTGTTTAGACCGG+CGG 0.600632 8_4:-54313305 None:intergenic
ATCACATAAAGAAACCGCAT+GGG 0.605441 8_4:-54319112 None:intergenic
AACACTCTTGGAATCCAACA+AGG 0.607086 8_4:+54313316 Msa1334030:CDS
AGAGGCACCAAGGTTATGAA+AGG 0.607601 8_4:+54315474 Msa1334030:CDS
AATCACATAAAGAAACCGCA+TGG 0.607782 8_4:-54319113 None:intergenic
GAACTATAGACAAAGAAGGA+TGG 0.611844 8_4:+54318093 Msa1334030:CDS
ATGTATGTATGAAATGTGAA+TGG 0.611977 8_4:-54312983 None:intergenic
TCCATGTGACAAATTAAAGA+CGG 0.614850 8_4:+54318916 Msa1334030:exon
AAATCCCTTCTACACCTCAT+CGG 0.618454 8_4:+54313429 Msa1334030:CDS
TTGTTTAGCCAGTTCCGATG+AGG 0.620036 8_4:-54313443 None:intergenic
TTCCTCGGTGCCTCCTTCCG+CGG 0.621675 8_4:+54313388 Msa1334030:CDS
CACGCACTCTTCTGTCGTAG+AGG 0.623082 8_4:-54319554 None:intergenic
TGTTGTGGAGGAGATGGAGA+TGG 0.624273 8_4:-54313097 None:intergenic
AACCGTCCATGTCTCATCAA+CGG 0.628190 8_4:+54313226 Msa1334030:CDS
AGTTCCGATGAGGTGTAGAA+GGG 0.629957 8_4:-54313433 None:intergenic
TGCAGTTGCATATATATGCG+TGG 0.631229 8_4:+54318967 Msa1334030:three_prime_UTR
GTGCATTGATTCGTCACCGG+AGG 0.632862 8_4:+54313558 Msa1334030:CDS
ATCAGGATACCTAAATGACC+CGG 0.634966 8_4:+54318058 Msa1334030:intron
TTAAACTTGACCTTTCGAAG+AGG 0.635513 8_4:-54319676 None:intergenic
CTTGACCTTTCGAAGAGGAG+AGG 0.635727 8_4:-54319671 None:intergenic
GCGGACGGTGAGGTGGACGT+CGG 0.646515 8_4:-54313275 None:intergenic
TATTGAAAAGTATAAGGTGA+CGG 0.646708 8_4:+54313924 Msa1334030:CDS
CGCCGCGGAAGGAGGCACCG+AGG 0.655697 8_4:-54313390 None:intergenic
CAATATCCGTTTCTGTACGT+GGG 0.656378 8_4:+54319041 Msa1334030:three_prime_UTR
TATGTATGAAATGTGAATGG+TGG 0.658123 8_4:-54312980 None:intergenic
AATTTGTATTAGAGGCACCA+AGG 0.664823 8_4:+54315464 Msa1334030:CDS
CGGTGGTGATAACCGCGCCG+CGG 0.680948 8_4:-54313405 None:intergenic
AACAGTATGAGTGTAATGGA+AGG 0.696571 8_4:-54313180 None:intergenic
GGTGTAGAAGGGATTTGCGG+TGG 0.703235 8_4:-54313422 None:intergenic
CAAATTGAGGAGAGTTACGG+AGG 0.706119 8_4:-54313357 None:intergenic
AAAGAAGGATGGCTACACAC+AGG 0.711154 8_4:+54318104 Msa1334030:CDS
TTAACTGCAAGACTTAACGA+AGG 0.717559 8_4:+54318877 Msa1334030:CDS
ACAGGGATATGGGATGACAG+AGG 0.730581 8_4:+54315296 Msa1334030:intron
CGCCGTTGATGAGACATGGA+CGG 0.745736 8_4:-54313228 None:intergenic
AAATGGTTCAAAGATCAGTG+AGG 0.746664 8_4:+54318511 Msa1334030:CDS
AGGATACCTAAATGACCCGG+AGG 0.746839 8_4:+54318061 Msa1334030:intron
GCATATTGGATCAACCCATG+CGG 0.763686 8_4:+54319098 Msa1334030:three_prime_UTR
ACACCAATACACAAACTACG+AGG 0.785558 8_4:+54313774 Msa1334030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTTATAAATGAAAATA+TGG - chr8_4:54314122-54314141 None:intergenic 10.0%
!! GATCATTTATTATTAAATAT+TGG - chr8_4:54314880-54314899 None:intergenic 10.0%
!! TATTACAAATAATATAAATG+GGG + chr8_4:54315175-54315194 Msa1334030:intron 10.0%
!!! ATTTAAAGTGTTTTATAATT+AGG + chr8_4:54316304-54316323 Msa1334030:intron 10.0%
!!! TCTTTTAAAATAAATAAGTT+GGG - chr8_4:54316523-54316542 None:intergenic 10.0%
!!! ATCTTTTAAAATAAATAAGT+TGG - chr8_4:54316524-54316543 None:intergenic 10.0%
!! TATTTAGTTATTGTATAAAA+AGG + chr8_4:54317601-54317620 Msa1334030:intron 10.0%
!! TATTAAAAACAAAACTTAAG+TGG - chr8_4:54314501-54314520 None:intergenic 15.0%
!! TGACTTATAAAAAAAATGAT+TGG + chr8_4:54314594-54314613 Msa1334030:intron 15.0%
!! AAAAATACTTAATGTATAGA+AGG + chr8_4:54315224-54315243 Msa1334030:intron 15.0%
!!! TAGATAAAGATATTTTTGTA+AGG + chr8_4:54316260-54316279 Msa1334030:intron 15.0%
!! ATTAACATATGTAAAAGAAT+GGG + chr8_4:54316648-54316667 Msa1334030:intron 15.0%
!! CATAACAATACTAAATAAAA+CGG - chr8_4:54316781-54316800 None:intergenic 15.0%
!! TCGTATTAAAATATAGAAAA+CGG - chr8_4:54316842-54316861 None:intergenic 15.0%
!!! TGAAATTCTTTTATTATAAG+AGG - chr8_4:54316876-54316895 None:intergenic 15.0%
!! AAATCAAAATAAGTTATCAA+AGG - chr8_4:54317438-54317457 None:intergenic 15.0%
!!! TATTTTGATTTGAATAAGAT+TGG + chr8_4:54317447-54317466 Msa1334030:intron 15.0%
!!! TATATAGTATTTTAAGGTTT+AGG + chr8_4:54317488-54317507 Msa1334030:intron 15.0%
!!! TAACAGTTATACATTTTAAT+TGG + chr8_4:54317928-54317947 Msa1334030:intron 15.0%
!! TTATTGATGAATACTATAAT+TGG - chr8_4:54317978-54317997 None:intergenic 15.0%
!! AAAGAATTGATTAAATACAA+AGG + chr8_4:54318179-54318198 Msa1334030:CDS 15.0%
!! ATGACTAATTATAATGATAA+TGG + chr8_4:54318425-54318444 Msa1334030:intron 15.0%
!! AGAAAATTATTCTACTAATT+TGG - chr8_4:54318583-54318602 None:intergenic 15.0%
!!! TAGAATAATTTTCTTGTTAT+GGG + chr8_4:54318589-54318608 Msa1334030:intron 15.0%
!!! GAGTAAAATAATTTTTCTAT+AGG + chr8_4:54319317-54319336 Msa1334030:three_prime_UTR 15.0%
!!! ATAATTTTTCTATAGGAAAA+TGG + chr8_4:54319324-54319343 Msa1334030:three_prime_UTR 15.0%
!!! TATATTGATTTAGCTAAGTT+TGG - chr8_4:54313039-54313058 None:intergenic 20.0%
!! AGAATAATAATCATTGTGAT+AGG - chr8_4:54314346-54314365 None:intergenic 20.0%
!!! AAAACTTAAGTTGTTATCAT+AGG - chr8_4:54314460-54314479 None:intergenic 20.0%
!!! TTAATTTGTATGCACTTTTT+AGG - chr8_4:54314642-54314661 None:intergenic 20.0%
!!! GTACACTAATAAATTTTGAA+AGG - chr8_4:54314962-54314981 None:intergenic 20.0%
!! GTAATAATCATAATAACAAG+TGG - chr8_4:54315084-54315103 None:intergenic 20.0%
!!! TTTAATTTGATATATGCTAC+AGG + chr8_4:54315278-54315297 Msa1334030:intron 20.0%
!!! TTAATTTGATATATGCTACA+GGG + chr8_4:54315279-54315298 Msa1334030:intron 20.0%
!!! AAATATTTTGATCGATGATA+TGG + chr8_4:54315837-54315856 Msa1334030:intron 20.0%
!! ATTTATCCATATAACTTCAT+CGG + chr8_4:54316017-54316036 Msa1334030:intron 20.0%
!!! AGTGTTTTATAATTAGGAAT+TGG + chr8_4:54316310-54316329 Msa1334030:intron 20.0%
!!! TTTTATAATTAGGAATTGGA+GGG + chr8_4:54316314-54316333 Msa1334030:intron 20.0%
!! GATTAACATATGTAAAAGAA+TGG + chr8_4:54316647-54316666 Msa1334030:intron 20.0%
!! TATTAAAATATAGAAAACGG+TGG - chr8_4:54316839-54316858 None:intergenic 20.0%
!! ATTGTTGTATGCATTAATTT+AGG + chr8_4:54316941-54316960 Msa1334030:intron 20.0%
!! ATTAAAGTATGCACAAATAA+GGG - chr8_4:54317048-54317067 None:intergenic 20.0%
!! AATTAAAGTATGCACAAATA+AGG - chr8_4:54317049-54317068 None:intergenic 20.0%
!!! GTGTTGTATATAGTATTTTA+AGG + chr8_4:54317482-54317501 Msa1334030:intron 20.0%
!!! AGGTTTGATTTATATTTAGT+AGG + chr8_4:54317538-54317557 Msa1334030:intron 20.0%
!!! TTTCTTGTTTTTATTTGACA+AGG - chr8_4:54317635-54317654 None:intergenic 20.0%
!! TGTCAAATAAAAACAAGAAA+AGG + chr8_4:54317635-54317654 Msa1334030:intron 20.0%
!! TTTATCTAAATAAGAACCTA+TGG - chr8_4:54317669-54317688 None:intergenic 20.0%
!!! TTTTTATGAAAACACTGATA+TGG - chr8_4:54317802-54317821 None:intergenic 20.0%
!!! AATTATAATGATAATGGTGT+TGG + chr8_4:54318431-54318450 Msa1334030:intron 20.0%
!!! GTAGAATAATTTTCTTGTTA+TGG + chr8_4:54318588-54318607 Msa1334030:intron 20.0%
!! ATAATATGCAATGATGTAAT+AGG - chr8_4:54318693-54318712 None:intergenic 20.0%
! ATGTATGTATGAAATGTGAA+TGG - chr8_4:54312986-54313005 None:intergenic 25.0%
!!! ATTTTGATATTAGGAGAATG+AGG - chr8_4:54313073-54313092 None:intergenic 25.0%
!!! GATGGTAACATTTTGATATT+AGG - chr8_4:54313082-54313101 None:intergenic 25.0%
!!! TTTGGGTTTATTTTAACTTC+TGG - chr8_4:54313640-54313659 None:intergenic 25.0%
!! CTAAATTCGATTTTACTATG+TGG + chr8_4:54313838-54313857 Msa1334030:CDS 25.0%
!! TGAGAAATTTGAGATAACTA+AGG + chr8_4:54313891-54313910 Msa1334030:CDS 25.0%
!!! ATTTGAGATAACTAAGGTTT+TGG + chr8_4:54313897-54313916 Msa1334030:CDS 25.0%
!! GGAACTTATTGAAAAGTATA+AGG + chr8_4:54313918-54313937 Msa1334030:CDS 25.0%
!! TATTGAAAAGTATAAGGTGA+CGG + chr8_4:54313924-54313943 Msa1334030:CDS 25.0%
! TTTACCAATGCTAAAACAAT+TGG - chr8_4:54313967-54313986 None:intergenic 25.0%
!!! TTTTAGCATTGGTAAAAAGT+GGG + chr8_4:54313971-54313990 Msa1334030:CDS 25.0%
! AAAATATTTGTGACTAGGAA+AGG - chr8_4:54314163-54314182 None:intergenic 25.0%
! CAGAAAAAATATTTGTGACT+AGG - chr8_4:54314168-54314187 None:intergenic 25.0%
! TACCAAAGATATTAAGTGTA+GGG + chr8_4:54314232-54314251 Msa1334030:intron 25.0%
!!! TTTTTTGTCTGATAGTTTAG+TGG - chr8_4:54314314-54314333 None:intergenic 25.0%
!! AAAGAAGCTATCTTTTCATT+CGG + chr8_4:54314390-54314409 Msa1334030:intron 25.0%
! TAATAATAAATGATCAGCGA+TGG + chr8_4:54314885-54314904 Msa1334030:intron 25.0%
!! ATTTTCCCAGTATATATGAA+AGG + chr8_4:54315550-54315569 Msa1334030:intron 25.0%
!! TTTTCCCAGTATATATGAAA+GGG + chr8_4:54315551-54315570 Msa1334030:intron 25.0%
! AATACCCTTTCATATATACT+GGG - chr8_4:54315558-54315577 None:intergenic 25.0%
! AAAAGTAGAAACTACGTTAA+AGG + chr8_4:54315634-54315653 Msa1334030:intron 25.0%
! GCATAAAAAAGTAGATGATT+TGG + chr8_4:54315731-54315750 Msa1334030:intron 25.0%
!!! GGATAAAAAAGTTGATGATT+TGG + chr8_4:54315779-54315798 Msa1334030:intron 25.0%
!! GTTTTATAATTAGGAATTGG+AGG + chr8_4:54316313-54316332 Msa1334030:intron 25.0%
! GAACAGTTTATAATAGGAAT+TGG + chr8_4:54316336-54316355 Msa1334030:intron 25.0%
! AGTTTATAATAGGAATTGGA+GGG + chr8_4:54316340-54316359 Msa1334030:intron 25.0%
! TGAGAAATTACAAATTCTTC+TGG + chr8_4:54316408-54316427 Msa1334030:intron 25.0%
! TAATCATACGTTGAAAACTA+AGG - chr8_4:54316632-54316651 None:intergenic 25.0%
!! TCTTTTGGTGAACATATATT+TGG - chr8_4:54316702-54316721 None:intergenic 25.0%
! ATGTTCACCAAAAGAAAAAA+CGG + chr8_4:54316707-54316726 Msa1334030:intron 25.0%
! TAAAACGGCGAAAATAAATT+AGG - chr8_4:54316766-54316785 None:intergenic 25.0%
! TGATTTCAAACTAATTGTCA+TGG - chr8_4:54317176-54317195 None:intergenic 25.0%
! TCAAAATAAGTTATCAAAGG+TGG - chr8_4:54317435-54317454 None:intergenic 25.0%
! TATGAAATCCATTAGTAATG+AGG + chr8_4:54318311-54318330 Msa1334030:intron 25.0%
! ATGAAATCCATTAGTAATGA+GGG + chr8_4:54318312-54318331 Msa1334030:intron 25.0%
!! CATTTGTTTGTTGCAAAAAT+AGG + chr8_4:54318725-54318744 Msa1334030:intron 25.0%
! AAGAAAATTATGAACTGAAG+TGG + chr8_4:54318754-54318773 Msa1334030:intron 25.0%
! CAATTAATAGTACTCACAAA+GGG - chr8_4:54319254-54319273 None:intergenic 25.0%
! AGTACTATTAATTGCATGTT+TGG + chr8_4:54319260-54319279 Msa1334030:intron 25.0%
! GTACTATTAATTGCATGTTT+GGG + chr8_4:54319261-54319280 Msa1334030:intron 25.0%
!!! GAAAATGGACTTTGATTTTA+TGG + chr8_4:54319339-54319358 Msa1334030:three_prime_UTR 25.0%
! ACTTAATGTTTCAAGCTTAT+AGG - chr8_4:54319499-54319518 None:intergenic 25.0%
! CTGTTAAAAAGAAAGTTGAA+AGG - chr8_4:54319650-54319669 None:intergenic 25.0%
!! CTTTCAACTTTCTTTTTAAC+AGG + chr8_4:54319648-54319667 Msa1334030:three_prime_UTR 25.0%
TTTCAGACGTGTGAATAATA+TGG + chr8_4:54312913-54312932 Msa1334030:five_prime_UTR 30.0%
TATGTATGAAATGTGAATGG+TGG - chr8_4:54312983-54313002 None:intergenic 30.0%
!!! TCTTGTTTTTGTTCTTGTTG+TGG - chr8_4:54313115-54313134 None:intergenic 30.0%
GTGTTGGAATTTCAATATCA+GGG - chr8_4:54313159-54313178 None:intergenic 30.0%
TGTGTTGGAATTTCAATATC+AGG - chr8_4:54313160-54313179 None:intergenic 30.0%
! TGTTGAATTGAGAAAGGTTT+TGG - chr8_4:54313207-54313226 None:intergenic 30.0%
!!! GATGAGTTTAGTTTTTGTTG+CGG - chr8_4:54313473-54313492 None:intergenic 30.0%
TGTGTTAACATAACACCTTT+AGG - chr8_4:54313706-54313725 None:intergenic 30.0%
ACAATATCACAGTTAGTTGA+CGG + chr8_4:54313742-54313761 Msa1334030:CDS 30.0%
AGTGCATAGATATGAAACAT+AGG - chr8_4:54313820-54313839 None:intergenic 30.0%
!!! GTTTTAGCATTGGTAAAAAG+TGG + chr8_4:54313970-54313989 Msa1334030:CDS 30.0%
!! TTTAGCATTGGTAAAAAGTG+GGG + chr8_4:54313972-54313991 Msa1334030:CDS 30.0%
TCTATTAGAGTGATGATAAC+TGG + chr8_4:54314018-54314037 Msa1334030:CDS 30.0%
CTACCAAAGATATTAAGTGT+AGG + chr8_4:54314231-54314250 Msa1334030:intron 30.0%
ACCAAAGATATTAAGTGTAG+GGG + chr8_4:54314233-54314252 Msa1334030:intron 30.0%
TAGATTTGACACTTTATGTG+TGG - chr8_4:54314290-54314309 None:intergenic 30.0%
! AAGAAGCTATCTTTTCATTC+GGG + chr8_4:54314391-54314410 Msa1334030:intron 30.0%
! AATATTTTCAGTAGAGCGAA+AGG + chr8_4:54314418-54314437 Msa1334030:intron 30.0%
! TTTTTGTGTACAACTGATCA+AGG - chr8_4:54314832-54314851 None:intergenic 30.0%
ACAAGTTCCCATTTCAAAAT+TGG + chr8_4:54314914-54314933 Msa1334030:intron 30.0%
CAAGTTCCCATTTCAAAATT+GGG + chr8_4:54314915-54314934 Msa1334030:intron 30.0%
!!! CCTTAACCCAATTTTGAAAT+GGG - chr8_4:54314924-54314943 None:intergenic 30.0%
ATGAATACCTTTCATAACCT+TGG - chr8_4:54315484-54315503 None:intergenic 30.0%
! TATAAGTTGAGTACAATGAG+TGG - chr8_4:54315524-54315543 None:intergenic 30.0%
GAATACCCTTTCATATATAC+TGG - chr8_4:54315559-54315578 None:intergenic 30.0%
AATTTAACAAGGTCTTGCTA+AGG + chr8_4:54315601-54315620 Msa1334030:intron 30.0%
ATTTAACAAGGTCTTGCTAA+GGG + chr8_4:54315602-54315621 Msa1334030:intron 30.0%
AAATTGAATATACATGCACC+AGG + chr8_4:54315709-54315728 Msa1334030:intron 30.0%
!!! ATCATCTACTTTTTTATGCC+TGG - chr8_4:54315730-54315749 None:intergenic 30.0%
!! AAAAGTAGATGATTTGGTTG+AGG + chr8_4:54315737-54315756 Msa1334030:intron 30.0%
!! AAAGTAGATGATTTGGTTGA+GGG + chr8_4:54315738-54315757 Msa1334030:intron 30.0%
!!! TATTTTGATCGATGATATGG+TGG + chr8_4:54315840-54315859 Msa1334030:intron 30.0%
TGATGTATACACTTCTAACA+AGG - chr8_4:54316121-54316140 None:intergenic 30.0%
CAGTTTATAATAGGAATTGG+AGG + chr8_4:54316339-54316358 Msa1334030:intron 30.0%
ATATTTGGACTCTACTATGA+TGG - chr8_4:54316687-54316706 None:intergenic 30.0%
TGTTCACCAAAAGAAAAAAC+GGG + chr8_4:54316708-54316727 Msa1334030:intron 30.0%
! TAAATTAGGATTGGTGTAGT+TGG - chr8_4:54316752-54316771 None:intergenic 30.0%
ATTGCTGTAAAATGAGAAAG+TGG - chr8_4:54316967-54316986 None:intergenic 30.0%
ACTGATTATAAACATTCCCA+CGG - chr8_4:54317307-54317326 None:intergenic 30.0%
GGAATGTTTATAATCAGTGA+CGG + chr8_4:54317309-54317328 Msa1334030:intron 30.0%
ATCCAACATTATAGTTGTGT+TGG + chr8_4:54317403-54317422 Msa1334030:intron 30.0%
ATCCAACACAACTATAATGT+TGG - chr8_4:54317408-54317427 None:intergenic 30.0%
! ATTTGAATAAGATTGGCTAC+AGG + chr8_4:54317454-54317473 Msa1334030:intron 30.0%
TTGAATTAGTGTAGTGAGTT+AGG - chr8_4:54317718-54317737 None:intergenic 30.0%
TATGAAAACACTCCTATATG+TGG - chr8_4:54317751-54317770 None:intergenic 30.0%
ATGAAAACACTGATATGGTT+AGG - chr8_4:54317797-54317816 None:intergenic 30.0%
AAGAGAACTATAGACAAAGA+AGG + chr8_4:54318089-54318108 Msa1334030:CDS 30.0%
ATGAACTCTTCATTGTTGAT+CGG + chr8_4:54318153-54318172 Msa1334030:CDS 30.0%
ATCTCTAGTCTAGTTACTTA+CGG - chr8_4:54318278-54318297 None:intergenic 30.0%
CTTTATTCCCTCATTACTAA+TGG - chr8_4:54318322-54318341 None:intergenic 30.0%
!!! ATTTTTTCCGTCACTAACTT+TGG + chr8_4:54318347-54318366 Msa1334030:intron 30.0%
TTAGTAACCAAAGTTAGTGA+CGG - chr8_4:54318357-54318376 None:intergenic 30.0%
!! GCATTTGTTGTAAGATCAAA+TGG + chr8_4:54318494-54318513 Msa1334030:CDS 30.0%
!!! TGAACTGAAGTGGTTTTAAT+TGG + chr8_4:54318764-54318783 Msa1334030:intron 30.0%
TCCATGTGACAAATTAAAGA+CGG + chr8_4:54318916-54318935 Msa1334030:exon 30.0%
! ACTGCATTTTCATATGAAGT+TGG - chr8_4:54318953-54318972 None:intergenic 30.0%
GCAATTAATAGTACTCACAA+AGG - chr8_4:54319255-54319274 None:intergenic 30.0%
GGAAGAACAAAAGAAAATGA+CGG - chr8_4:54319593-54319612 None:intergenic 30.0%
TGGTAACATCAGTAGTTGTT+GGG - chr8_4:54312949-54312968 None:intergenic 35.0%
ATGGTAACATCAGTAGTTGT+TGG - chr8_4:54312950-54312969 None:intergenic 35.0%
AAATGTGAATGGTGGTAGTT+TGG - chr8_4:54312975-54312994 None:intergenic 35.0%
TTAGCTAAGTTTGGTTGATC+TGG - chr8_4:54313030-54313049 None:intergenic 35.0%
!! TGTTTTTGTTCTTGTTGTGG+AGG - chr8_4:54313112-54313131 None:intergenic 35.0%
! AACAGTATGAGTGTAATGGA+AGG - chr8_4:54313183-54313202 None:intergenic 35.0%
TGGAAACAGTATGAGTGTAA+TGG - chr8_4:54313187-54313206 None:intergenic 35.0%
TTACTATGTGGTATTCGTTC+TGG + chr8_4:54313850-54313869 Msa1334030:CDS 35.0%
ACCAATGCTAAAACAATTGG+TGG - chr8_4:54313964-54313983 None:intergenic 35.0%
TTGAACAAGCTGTTAAGGAT+AGG + chr8_4:54314064-54314083 Msa1334030:CDS 35.0%
CCCATTTCAAAATTGGGTTA+AGG + chr8_4:54314921-54314940 Msa1334030:intron 35.0%
!! GCCTTAACCCAATTTTGAAA+TGG - chr8_4:54314925-54314944 None:intergenic 35.0%
TGATATATGCTACAGGGATA+TGG + chr8_4:54315285-54315304 Msa1334030:intron 35.0%
GATATATGCTACAGGGATAT+GGG + chr8_4:54315286-54315305 Msa1334030:intron 35.0%
AATGCCAAGCTAATTGAAAG+TGG - chr8_4:54315327-54315346 None:intergenic 35.0%
! AATTAGCTTGGCATTTGCAA+AGG + chr8_4:54315332-54315351 Msa1334030:CDS 35.0%
AAACGCTGAGATGAAAATAG+TGG + chr8_4:54315398-54315417 Msa1334030:CDS 35.0%
!! AAAATAGTGGACACAGAAAC+TGG + chr8_4:54315411-54315430 Msa1334030:CDS 35.0%
!! ATTTCACCAGCTTTGTTTCT+TGG - chr8_4:54315447-54315466 None:intergenic 35.0%
GCTGGTGAAATTTGTATTAG+AGG + chr8_4:54315456-54315475 Msa1334030:CDS 35.0%
!! AATTTGTATTAGAGGCACCA+AGG + chr8_4:54315464-54315483 Msa1334030:CDS 35.0%
TGAGTGGAGCATATAAGAAT+AGG - chr8_4:54315508-54315527 None:intergenic 35.0%
!! AAGTAGATGATTTGGTTGAG+GGG + chr8_4:54315739-54315758 Msa1334030:intron 35.0%
GACAGTAAAAGTTGCACTTA+TGG + chr8_4:54315875-54315894 Msa1334030:intron 35.0%
AACACTTGTGTATGTACTGT+GGG - chr8_4:54315924-54315943 None:intergenic 35.0%
AAACACTTGTGTATGTACTG+TGG - chr8_4:54315925-54315944 None:intergenic 35.0%
ATCGTGTGTAAATCTGCTTT+CGG - chr8_4:54315955-54315974 None:intergenic 35.0%
TAACTGCCGATGAAGTTATA+TGG - chr8_4:54316026-54316045 None:intergenic 35.0%
! TGTCGTCGGTTAAAATTCAT+CGG - chr8_4:54316053-54316072 None:intergenic 35.0%
AAGACGTAAATGTTCATCGA+CGG - chr8_4:54316081-54316100 None:intergenic 35.0%
! GCACCTCATTTTCAATGATT+GGG + chr8_4:54316156-54316175 Msa1334030:intron 35.0%
ACTATATGCTCGTGAACAAT+TGG - chr8_4:54316182-54316201 None:intergenic 35.0%
GTTCACGAGCATATAGTATA+TGG + chr8_4:54316185-54316204 Msa1334030:intron 35.0%
TGGAGGGAACAGTTTATAAT+AGG + chr8_4:54316330-54316349 Msa1334030:intron 35.0%
!! ATCCCATGAGACTAGTTTAA+TGG + chr8_4:54316449-54316468 Msa1334030:intron 35.0%
!! TCCCATGAGACTAGTTTAAT+GGG + chr8_4:54316450-54316469 Msa1334030:intron 35.0%
! ACCCATTAAACTAGTCTCAT+GGG - chr8_4:54316454-54316473 None:intergenic 35.0%
! TACCCATTAAACTAGTCTCA+TGG - chr8_4:54316455-54316474 None:intergenic 35.0%
!!! CTAAGTCCCGTTTTTTCTTT+TGG - chr8_4:54316717-54316736 None:intergenic 35.0%
CAAAAGAAAAAACGGGACTT+AGG + chr8_4:54316715-54316734 Msa1334030:intron 35.0%
CGGCGAAAATAAATTAGGAT+TGG - chr8_4:54316761-54316780 None:intergenic 35.0%
ATGATGCATAGGTGAAGATT+AGG - chr8_4:54316804-54316823 None:intergenic 35.0%
! ATTGTGTTCTGATGATGCAT+AGG - chr8_4:54316815-54316834 None:intergenic 35.0%
!! AACTTCTAAAATAGCAGCTG+AGG + chr8_4:54316990-54317009 Msa1334030:intron 35.0%
!! ACTTCTAAAATAGCAGCTGA+GGG + chr8_4:54316991-54317010 Msa1334030:intron 35.0%
AAAGTATGCACAAATAAGGG+CGG - chr8_4:54317045-54317064 None:intergenic 35.0%
ACTGTAAGGTACATACAATC+TGG + chr8_4:54317105-54317124 Msa1334030:intron 35.0%
TAGATGCATTCATGCAGTTA+CGG + chr8_4:54317147-54317166 Msa1334030:intron 35.0%
TGTTTATAATCAGTGACGGT+AGG + chr8_4:54317313-54317332 Msa1334030:intron 35.0%
! CTTGTTTCTCCACTCATTAA+AGG + chr8_4:54317358-54317377 Msa1334030:intron 35.0%
AAGTGAACAAGTCCACATAT+AGG + chr8_4:54317736-54317755 Msa1334030:intron 35.0%
CACAGCATAGTAAGTCTTTA+GGG - chr8_4:54318038-54318057 None:intergenic 35.0%
TCACAGCATAGTAAGTCTTT+AGG - chr8_4:54318039-54318058 None:intergenic 35.0%
GAACTATAGACAAAGAAGGA+TGG + chr8_4:54318093-54318112 Msa1334030:CDS 35.0%
AGATTGAAAGATGAAGTTGC+TGG + chr8_4:54318458-54318477 Msa1334030:intron 35.0%
GATCTTACAACAAATGCAAC+TGG - chr8_4:54318491-54318510 None:intergenic 35.0%
AAATGGTTCAAAGATCAGTG+AGG + chr8_4:54318511-54318530 Msa1334030:CDS 35.0%
CAAGCAATACATATCACAAC+AGG + chr8_4:54318541-54318560 Msa1334030:CDS 35.0%
TTAACTGCAAGACTTAACGA+AGG + chr8_4:54318877-54318896 Msa1334030:CDS 35.0%
!! TCCGTCTTTAATTTGTCACA+TGG - chr8_4:54318920-54318939 None:intergenic 35.0%
! TGTGTCTTTTGTGTGCATAT+TGG + chr8_4:54319084-54319103 Msa1334030:three_prime_UTR 35.0%
ATCACATAAAGAAACCGCAT+GGG - chr8_4:54319115-54319134 None:intergenic 35.0%
AATCACATAAAGAAACCGCA+TGG - chr8_4:54319116-54319135 None:intergenic 35.0%
! GGGATTCACTAATTGGTAAT+TGG + chr8_4:54319198-54319217 Msa1334030:intron 35.0%
! ATTGCATGTTTGGGCTTTTT+AGG + chr8_4:54319270-54319289 Msa1334030:intron 35.0%
CTTAGATCTGTTAGTCACAT+CGG + chr8_4:54319378-54319397 Msa1334030:three_prime_UTR 35.0%
TTAAACTTGACCTTTCGAAG+AGG - chr8_4:54319679-54319698 None:intergenic 35.0%
GAATGGTGGTAGTTTGGTTA+TGG - chr8_4:54312969-54312988 None:intergenic 40.0%
TTGATCTGGTGGAGCTAATT+TGG - chr8_4:54313016-54313035 None:intergenic 40.0%
CAATATCAGGGAGCTTAGAA+CGG - chr8_4:54313147-54313166 None:intergenic 40.0%
GACGGTTGTTGAATTGAGAA+AGG - chr8_4:54313213-54313232 None:intergenic 40.0%
!! GATTCCAAGAGTGTTTAGAC+CGG - chr8_4:54313311-54313330 None:intergenic 40.0%
AACACTCTTGGAATCCAACA+AGG + chr8_4:54313316-54313335 Msa1334030:CDS 40.0%
TCATGATGACATCACCTTGT+TGG - chr8_4:54313333-54313352 None:intergenic 40.0%
GTGCAAATTGAGGAGAGTTA+CGG - chr8_4:54313363-54313382 None:intergenic 40.0%
AAATCCCTTCTACACCTCAT+CGG + chr8_4:54313429-54313448 Msa1334030:CDS 40.0%
!!! GAGTTTAGTTTTTGTTGCGG+TGG - chr8_4:54313470-54313489 None:intergenic 40.0%
CCAGAAGTTCCTGAAGAAAA+CGG - chr8_4:54313679-54313698 None:intergenic 40.0%
!! GGAACTTCTGGTTTACCTAA+AGG + chr8_4:54313688-54313707 Msa1334030:CDS 40.0%
! TCGTAGTTTGTGTATTGGTG+TGG - chr8_4:54313775-54313794 None:intergenic 40.0%
ACACCAATACACAAACTACG+AGG + chr8_4:54313774-54313793 Msa1334030:CDS 40.0%
! CATCCTCGTAGTTTGTGTAT+TGG - chr8_4:54313780-54313799 None:intergenic 40.0%
!!! GCCACCAATTGTTTTAGCAT+TGG + chr8_4:54313960-54313979 Msa1334030:CDS 40.0%
! TGTTCAAGTTCCATTCCCAT+GGG - chr8_4:54314051-54314070 None:intergenic 40.0%
! TTGTTCAAGTTCCATTCCCA+TGG - chr8_4:54314052-54314071 None:intergenic 40.0%
GGAACTTGAACAAGCTGTTA+AGG + chr8_4:54314059-54314078 Msa1334030:CDS 40.0%
GCCCCTACACTTAATATCTT+TGG - chr8_4:54314237-54314256 None:intergenic 40.0%
AAGATATTAAGTGTAGGGGC+CGG + chr8_4:54314237-54314256 Msa1334030:intron 40.0%
ACTTTATGTGTGGAGAAGTG+GGG - chr8_4:54314280-54314299 None:intergenic 40.0%
CACTTTATGTGTGGAGAAGT+GGG - chr8_4:54314281-54314300 None:intergenic 40.0%
ACACTTTATGTGTGGAGAAG+TGG - chr8_4:54314282-54314301 None:intergenic 40.0%
AGGACCACTTTCAATTAGCT+TGG + chr8_4:54315320-54315339 Msa1334030:CDS 40.0%
!! ACCAGCTTTGTTTCTTGGAA+GGG - chr8_4:54315442-54315461 None:intergenic 40.0%
!! TGATCGATGATATGGTGGAT+TGG + chr8_4:54315845-54315864 Msa1334030:intron 40.0%
TGTGTAAATCTGCTTTCGGT+TGG - chr8_4:54315951-54315970 None:intergenic 40.0%
TGCTGTTCGTACATAGTGTT+TGG + chr8_4:54315978-54315997 Msa1334030:intron 40.0%
! CGCACCTCATTTTCAATGAT+TGG + chr8_4:54316155-54316174 Msa1334030:intron 40.0%
TGGCCCAATCATTGAAAATG+AGG - chr8_4:54316162-54316181 None:intergenic 40.0%
!! GAGACTAGTTTAATGGGTAG+AGG + chr8_4:54316456-54316475 Msa1334030:intron 40.0%
!! GTAAAAGAATGGGCTGAGTA+AGG + chr8_4:54316658-54316677 Msa1334030:intron 40.0%
! ATTAGGATTGGTGTAGTTGG+TGG - chr8_4:54316749-54316768 None:intergenic 40.0%
GTACACGTTTAGCACTACAA+TGG - chr8_4:54317022-54317041 None:intergenic 40.0%
AAGTATGCACAAATAAGGGC+GGG - chr8_4:54317044-54317063 None:intergenic 40.0%
TACAGTGCTTCTTACGCATA+AGG - chr8_4:54317091-54317110 None:intergenic 40.0%
!! TATGCGTAAGAAGCACTGTA+AGG + chr8_4:54317091-54317110 Msa1334030:intron 40.0%
AGATGCATTCATGCAGTTAC+GGG + chr8_4:54317148-54317167 Msa1334030:intron 40.0%
CACACATCACCTTTAATGAG+TGG - chr8_4:54317370-54317389 None:intergenic 40.0%
TTAGTGTAGTGAGTTAGGTG+AGG - chr8_4:54317713-54317732 None:intergenic 40.0%
AACACTGATATGGTTAGGTG+AGG - chr8_4:54317792-54317811 None:intergenic 40.0%
AGACTTACTATGCTGTGATC+AGG + chr8_4:54318041-54318060 Msa1334030:intron 40.0%
ATCAGGATACCTAAATGACC+CGG + chr8_4:54318058-54318077 Msa1334030:intron 40.0%
ATAGTTCTCTTTGTTGCCTC+CGG - chr8_4:54318080-54318099 None:intergenic 40.0%
ACAGCAGCATCAGAAATGTT+TGG - chr8_4:54318251-54318270 None:intergenic 40.0%
! GGAGTGTCAAGATGAGTTTA+AGG + chr8_4:54318610-54318629 Msa1334030:intron 40.0%
!!! AAGTGGTTTTAATTGGCTGC+AGG + chr8_4:54318771-54318790 Msa1334030:intron 40.0%
! ATTTTTCCTGAGGCAGCTTT+AGG - chr8_4:54318844-54318863 None:intergenic 40.0%
! CTTTCGCAGAATTTTTCCTG+AGG - chr8_4:54318854-54318873 None:intergenic 40.0%
CTCAGGAAAAATTCTGCGAA+AGG + chr8_4:54318852-54318871 Msa1334030:CDS 40.0%
TGCAGTTGCATATATATGCG+TGG + chr8_4:54318967-54318986 Msa1334030:three_prime_UTR 40.0%
CAATATCCGTTTCTGTACGT+GGG + chr8_4:54319041-54319060 Msa1334030:three_prime_UTR 40.0%
TATTCCTCTCCTGCTTGATA+GGG + chr8_4:54319176-54319195 Msa1334030:three_prime_UTR 40.0%
TGATAGGGGGATTCACTAAT+TGG + chr8_4:54319191-54319210 Msa1334030:intron 40.0%
CGATGTGACTAACAGATCTA+AGG - chr8_4:54319380-54319399 None:intergenic 40.0%
TCTGTTAGTCACATCGGATT+TGG + chr8_4:54319384-54319403 Msa1334030:three_prime_UTR 40.0%
CATCAGTAGTTGTTGGGACA+GGG - chr8_4:54312943-54312962 None:intergenic 45.0%
ACATCAGTAGTTGTTGGGAC+AGG - chr8_4:54312944-54312963 None:intergenic 45.0%
GCTAAGTTTGGTTGATCTGG+TGG - chr8_4:54313027-54313046 None:intergenic 45.0%
! TGTTCTTGTTGTGGAGGAGA+TGG - chr8_4:54313106-54313125 None:intergenic 45.0%
! GAGTGTAATGGAAGGTGTGT+TGG - chr8_4:54313175-54313194 None:intergenic 45.0%
AACCGTCCATGTCTCATCAA+CGG + chr8_4:54313226-54313245 Msa1334030:CDS 45.0%
CAAATTGAGGAGAGTTACGG+AGG - chr8_4:54313360-54313379 None:intergenic 45.0%
AGGAAGGTGAGTGCAAATTG+AGG - chr8_4:54313373-54313392 None:intergenic 45.0%
CAATTTGCACTCACCTTCCT+CGG + chr8_4:54313373-54313392 Msa1334030:CDS 45.0%
TGAGGTGTAGAAGGGATTTG+CGG - chr8_4:54313428-54313447 None:intergenic 45.0%
AGTTCCGATGAGGTGTAGAA+GGG - chr8_4:54313436-54313455 None:intergenic 45.0%
TTGTTTAGCCAGTTCCGATG+AGG - chr8_4:54313446-54313465 None:intergenic 45.0%
!! TGTGTGCATTGATTCGTCAC+CGG + chr8_4:54313555-54313574 Msa1334030:CDS 45.0%
ACAACACGTTCATCTTCCTC+CGG - chr8_4:54313577-54313596 None:intergenic 45.0%
GTAACGCAACTACGTCGTTT+GGG - chr8_4:54313657-54313676 None:intergenic 45.0%
! GTTGCGTTACCGTTTTCTTC+AGG + chr8_4:54313667-54313686 Msa1334030:CDS 45.0%
! CCGTTTTCTTCAGGAACTTC+TGG + chr8_4:54313676-54313695 Msa1334030:CDS 45.0%
GAACTGTACTTGGACAGGTT+TGG + chr8_4:54314094-54314113 Msa1334030:intron 45.0%
! GGAATTTGGAGTTCGAACTC+CGG - chr8_4:54314259-54314278 None:intergenic 45.0%
CACCAGCTACTCGATTACTT+TGG - chr8_4:54315201-54315220 None:intergenic 45.0%
GAACCATTCAAGACAAAGCC+TGG + chr8_4:54315354-54315373 Msa1334030:CDS 45.0%
TCCCTTCCAAGAAACAAAGC+TGG + chr8_4:54315438-54315457 Msa1334030:CDS 45.0%
!! CACCAGCTTTGTTTCTTGGA+AGG - chr8_4:54315443-54315462 None:intergenic 45.0%
!! AGAGGCACCAAGGTTATGAA+AGG + chr8_4:54315474-54315493 Msa1334030:CDS 45.0%
!! TCGATGATATGGTGGATTGG+TGG + chr8_4:54315848-54315867 Msa1334030:intron 45.0%
!! ATGATATGGTGGATTGGTGG+TGG + chr8_4:54315851-54315870 Msa1334030:intron 45.0%
!! TGATATGGTGGATTGGTGGT+GGG + chr8_4:54315852-54315871 Msa1334030:intron 45.0%
TGTATGTACTGTGGGACTAC+GGG - chr8_4:54315916-54315935 None:intergenic 45.0%
GTGTATGTACTGTGGGACTA+CGG - chr8_4:54315917-54315936 None:intergenic 45.0%
!! GATTGGTGTAGTTGGTGGTT+GGG - chr8_4:54316744-54316763 None:intergenic 45.0%
CGTTTAGCACTACAATGGCT+TGG - chr8_4:54317017-54317036 None:intergenic 45.0%
ACGATCACAAATCTTGACCG+TGG + chr8_4:54317287-54317306 Msa1334030:intron 45.0%
CGATCACAAATCTTGACCGT+GGG + chr8_4:54317288-54317307 Msa1334030:intron 45.0%
! AGAAAAGGTGTGTGCACCAT+AGG + chr8_4:54317650-54317669 Msa1334030:intron 45.0%
TAGTGAGTTAGGTGAGGATG+TGG - chr8_4:54317707-54317726 None:intergenic 45.0%
GATATGGTTAGGTGAGGATG+TGG - chr8_4:54317786-54317805 None:intergenic 45.0%
TAGTTCTCTTTGTTGCCTCC+GGG - chr8_4:54318079-54318098 None:intergenic 45.0%
AAAGAAGGATGGCTACACAC+AGG + chr8_4:54318104-54318123 Msa1334030:CDS 45.0%
ACTATTCCTAAAGCTGCCTC+AGG + chr8_4:54318835-54318854 Msa1334030:CDS 45.0%
TGCAAGACTTAACGAAGGTC+TGG + chr8_4:54318882-54318901 Msa1334030:CDS 45.0%
GCAATATCCGTTTCTGTACG+TGG + chr8_4:54319040-54319059 Msa1334030:three_prime_UTR 45.0%
TTTGCACCCACGTACAGAAA+CGG - chr8_4:54319050-54319069 None:intergenic 45.0%
GCATATTGGATCAACCCATG+CGG + chr8_4:54319098-54319117 Msa1334030:three_prime_UTR 45.0%
TGATGATCCTGCGACTCAAT+AGG + chr8_4:54319151-54319170 Msa1334030:three_prime_UTR 45.0%
GAATAGTCCTATTGAGTCGC+AGG - chr8_4:54319161-54319180 None:intergenic 45.0%
CTATTCCTCTCCTGCTTGAT+AGG + chr8_4:54319175-54319194 Msa1334030:three_prime_UTR 45.0%
ATTCCTCTCCTGCTTGATAG+GGG + chr8_4:54319177-54319196 Msa1334030:three_prime_UTR 45.0%
CGTCGAATCTTCAGACAAAG+AGG - chr8_4:54319614-54319633 None:intergenic 45.0%
TTGTCTGAAGATTCGACGAC+TGG + chr8_4:54319616-54319635 Msa1334030:three_prime_UTR 45.0%
!! ATTATTACAAATAATATAAA+TGG + chr8_4:54315173-54315192 Msa1334030:intron 5.0%
!! TTATTACAAATAATATAAAT+GGG + chr8_4:54315174-54315193 Msa1334030:intron 5.0%
!!! TTTTTTATAATAATTTAACA+AGG + chr8_4:54315590-54315609 Msa1334030:intron 5.0%
!!! TAAAATTTTTGTTAAAAAAA+AGG + chr8_4:54317518-54317537 Msa1334030:intron 5.0%
!!! AAAATTTTTGTTAAAAAAAA+AGG + chr8_4:54317519-54317538 Msa1334030:intron 5.0%
TGTTGTGGAGGAGATGGAGA+TGG - chr8_4:54313100-54313119 None:intergenic 50.0%
GGAGTAGGTTAGGGTTTCTC+CGG - chr8_4:54313257-54313276 None:intergenic 50.0%
!! TCCAAGAGTGTTTAGACCGG+CGG - chr8_4:54313308-54313327 None:intergenic 50.0%
CAGTTCCGATGAGGTGTAGA+AGG - chr8_4:54313437-54313456 None:intergenic 50.0%
CTTCTACACCTCATCGGAAC+TGG + chr8_4:54313435-54313454 Msa1334030:CDS 50.0%
GGAGGAAGATGAACGTGTTG+TGG + chr8_4:54313576-54313595 Msa1334030:CDS 50.0%
GGTAACGCAACTACGTCGTT+TGG - chr8_4:54313658-54313677 None:intergenic 50.0%
!! ATAACTGGTGCTGCTCCCAT+GGG + chr8_4:54314033-54314052 Msa1334030:CDS 50.0%
AGGTTGCCACGAACTGTACT+TGG + chr8_4:54314084-54314103 Msa1334030:CDS 50.0%
ACCTGTCCAAGTACAGTTCG+TGG - chr8_4:54314093-54314112 None:intergenic 50.0%
AGCTACGCTGGACTTGTGAT+AGG - chr8_4:54314201-54314220 None:intergenic 50.0%
GTGTGGAGAAGTGGGGAATT+TGG - chr8_4:54314273-54314292 None:intergenic 50.0%
GGCCAAAGTAATCGAGTAGC+TGG + chr8_4:54315196-54315215 Msa1334030:intron 50.0%
ACAGGGATATGGGATGACAG+AGG + chr8_4:54315296-54315315 Msa1334030:intron 50.0%
! GCACCAGGCTTTGTCTTGAA+TGG - chr8_4:54315360-54315379 None:intergenic 50.0%
AAGACAAAGCCTGGTGCATG+TGG + chr8_4:54315363-54315382 Msa1334030:CDS 50.0%
! TGAGGGGTCGTGTTTGAGAT+TGG + chr8_4:54315755-54315774 Msa1334030:intron 50.0%
!! GATATGGTGGATTGGTGGTG+GGG + chr8_4:54315853-54315872 Msa1334030:intron 50.0%
CATCGACGGTTAACTGTCGT+CGG - chr8_4:54316067-54316086 None:intergenic 50.0%
!! GGATTGGTGTAGTTGGTGGT+TGG - chr8_4:54316745-54316764 None:intergenic 50.0%
GTGATCGTGCGAGATTAGAC+AGG - chr8_4:54317275-54317294 None:intergenic 50.0%
AGGATACCTAAATGACCCGG+AGG + chr8_4:54318061-54318080 Msa1334030:intron 50.0%
TTGTTGCCTCCGGGTCATTT+AGG - chr8_4:54318070-54318089 None:intergenic 50.0%
TGGCTACACACAGGTGACAT+TGG + chr8_4:54318113-54318132 Msa1334030:CDS 50.0%
AACAATGCTTCGAGCTCAGC+AGG - chr8_4:54318218-54318237 None:intergenic 50.0%
TTCCTCTCCTGCTTGATAGG+GGG + chr8_4:54319178-54319197 Msa1334030:three_prime_UTR 50.0%
AGTGAATCCCCCTATCAAGC+AGG - chr8_4:54319188-54319207 None:intergenic 50.0%
TGAAGATTCGACGACTGGCA+AGG + chr8_4:54319621-54319640 Msa1334030:three_prime_UTR 50.0%
CTTGACCTTTCGAAGAGGAG+AGG - chr8_4:54319674-54319693 None:intergenic 50.0%
! CGCCGTTGATGAGACATGGA+CGG - chr8_4:54313231-54313250 None:intergenic 55.0%
! GTGTCGCCGTTGATGAGACA+TGG - chr8_4:54313235-54313254 None:intergenic 55.0%
TGTCTCATCAACGGCGACAC+CGG + chr8_4:54313235-54313254 Msa1334030:CDS 55.0%
GTGGACGTCGGAGTAGGTTA+GGG - chr8_4:54313266-54313285 None:intergenic 55.0%
! TTAGACCGGCGGCGATTTTG+CGG - chr8_4:54313297-54313316 None:intergenic 55.0%
GGTGTAGAAGGGATTTGCGG+TGG - chr8_4:54313425-54313444 None:intergenic 55.0%
!! GTGCATTGATTCGTCACCGG+AGG + chr8_4:54313558-54313577 Msa1334030:CDS 55.0%
!! GATAACTGGTGCTGCTCCCA+TGG + chr8_4:54314032-54314051 Msa1334030:CDS 55.0%
GCCACGAACTGTACTTGGAC+AGG + chr8_4:54314089-54314108 Msa1334030:CDS 55.0%
CAAGTCCAGCGTAGCTCACT+TGG + chr8_4:54314205-54314224 Msa1334030:intron 55.0%
AGCTACCAAGTGAGCTACGC+TGG - chr8_4:54314213-54314232 None:intergenic 55.0%
GGATATGGGATGACAGAGGC+AGG + chr8_4:54315300-54315319 Msa1334030:CDS 55.0%
! GGGGTCGTGTTTGAGATTGG+TGG + chr8_4:54315758-54315777 Msa1334030:intron 55.0%
ATCCCCCTATCAAGCAGGAG+AGG - chr8_4:54319183-54319202 None:intergenic 55.0%
CACGCACTCTTCTGTCGTAG+AGG - chr8_4:54319557-54319576 None:intergenic 55.0%
! TACGACAGAAGAGTGCGTGC+TGG + chr8_4:54319558-54319577 Msa1334030:three_prime_UTR 55.0%
ACAGGCCTCTCCTCTTCGAA+AGG + chr8_4:54319666-54319685 Msa1334030:three_prime_UTR 55.0%
GGTGGACGTCGGAGTAGGTT+AGG - chr8_4:54313267-54313286 None:intergenic 60.0%
! CGATTTTGCGGACGGTGAGG+TGG - chr8_4:54313285-54313304 None:intergenic 60.0%
GCCGCCGGTCTAAACACTCT+TGG + chr8_4:54313304-54313323 Msa1334030:CDS 60.0%
!! TGGTGCTGCTCCCATGGGAA+TGG + chr8_4:54314038-54314057 Msa1334030:CDS 60.0%
ACGACTGTGCCACATGCACC+AGG - chr8_4:54315375-54315394 None:intergenic 60.0%
CGAGCTCAGCAGGAGCTACT+TGG - chr8_4:54318208-54318227 None:intergenic 60.0%
GGTGAGGTGGACGTCGGAGT+AGG - chr8_4:54313272-54313291 None:intergenic 65.0%
! CGGCGATTTTGCGGACGGTG+AGG - chr8_4:54313288-54313307 None:intergenic 65.0%
ACCGTCCGCAAAATCGCCGC+CGG + chr8_4:54313289-54313308 Msa1334030:CDS 65.0%
! ACCGGCGGCGATTTTGCGGA+CGG - chr8_4:54313293-54313312 None:intergenic 65.0%
!! TTCCTCGGTGCCTCCTTCCG+CGG + chr8_4:54313388-54313407 Msa1334030:CDS 65.0%
GCGGACGGTGAGGTGGACGT+CGG - chr8_4:54313278-54313297 None:intergenic 70.0%
!! GCGGAAGGAGGCACCGAGGA+AGG - chr8_4:54313389-54313408 None:intergenic 70.0%
GATAACCGCGCCGCGGAAGG+AGG - chr8_4:54313401-54313420 None:intergenic 70.0%
GGTGATAACCGCGCCGCGGA+AGG - chr8_4:54313404-54313423 None:intergenic 70.0%
CGGTGGTGATAACCGCGCCG+CGG - chr8_4:54313408-54313427 None:intergenic 70.0%
!!! CGCCGCGGAAGGAGGCACCG+AGG - chr8_4:54313393-54313412 None:intergenic 80.0%
! CGGTGCCTCCTTCCGCGGCG+CGG + chr8_4:54313393-54313412 Msa1334030:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54312901 54319705 54312901 ID=Msa1334030;Name=Msa1334030
chr8_4 mRNA 54312901 54319705 54312901 ID=Msa1334030-mRNA-1;Parent=Msa1334030;Name=Msa1334030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=190|1|1|1|0.8|0.66|6|689|554
chr8_4 exon 54312901 54314110 54312901 ID=Msa1334030-mRNA-1:exon:16874;Parent=Msa1334030-mRNA-1
chr8_4 exon 54315300 54315495 54315300 ID=Msa1334030-mRNA-1:exon:16875;Parent=Msa1334030-mRNA-1
chr8_4 exon 54318063 54318276 54318063 ID=Msa1334030-mRNA-1:exon:16876;Parent=Msa1334030-mRNA-1
chr8_4 exon 54318460 54318562 54318460 ID=Msa1334030-mRNA-1:exon:16877;Parent=Msa1334030-mRNA-1
chr8_4 exon 54318793 54319199 54318793 ID=Msa1334030-mRNA-1:exon:16878;Parent=Msa1334030-mRNA-1
chr8_4 exon 54319292 54319705 54319292 ID=Msa1334030-mRNA-1:exon:16879;Parent=Msa1334030-mRNA-1
chr8_4 five_prime_UTR 54312901 54313090 54312901 ID=Msa1334030-mRNA-1:five_prime_utr;Parent=Msa1334030-mRNA-1
chr8_4 CDS 54313091 54314110 54313091 ID=Msa1334030-mRNA-1:cds;Parent=Msa1334030-mRNA-1
chr8_4 CDS 54315300 54315495 54315300 ID=Msa1334030-mRNA-1:cds;Parent=Msa1334030-mRNA-1
chr8_4 CDS 54318063 54318276 54318063 ID=Msa1334030-mRNA-1:cds;Parent=Msa1334030-mRNA-1
chr8_4 CDS 54318460 54318562 54318460 ID=Msa1334030-mRNA-1:cds;Parent=Msa1334030-mRNA-1
chr8_4 CDS 54318793 54318924 54318793 ID=Msa1334030-mRNA-1:cds;Parent=Msa1334030-mRNA-1
chr8_4 three_prime_UTR 54318925 54319199 54318925 ID=Msa1334030-mRNA-1:three_prime_utr;Parent=Msa1334030-mRNA-1
chr8_4 three_prime_UTR 54319292 54319705 54319292 ID=Msa1334030-mRNA-1:three_prime_utr;Parent=Msa1334030-mRNA-1
Gene Sequence

>Msa1334030

ATGTTACCATCTCCATCTCCTCCACAACAAGAACAAAAACAAGAATTCATATTCCGTTCTAAGCTCCCTGATATTGAAATTCCAACACACCTTCCATTACACTCATACTGTTTCCAAAACCTTTCTCAATTCAACAACCGTCCATGTCTCATCAACGGCGACACCGGAGAAACCCTAACCTACTCCGACGTCCACCTCACCGTCCGCAAAATCGCCGCCGGTCTAAACACTCTTGGAATCCAACAAGGTGATGTCATCATGATCGTCCTCCGTAACTCTCCTCAATTTGCACTCACCTTCCTCGGTGCCTCCTTCCGCGGCGCGGTTATCACCACCGCAAATCCCTTCTACACCTCATCGGAACTGGCTAAACAAGCCACCGCAACAAAAACTAAACTCATCGTCACACAATCAGCATATCTCAATAAAATCAACGATTTCGCAAAACTCAACGACATCAAAATTGTGTGCATTGATTCGTCACCGGAGGAAGATGAACGTGTTGTGGATTTTTCTGTTTTAACAAATGCTGATGAAAACGAATTACCAGAAGTTAAAATAAACCCAAACGACGTAGTTGCGTTACCGTTTTCTTCAGGAACTTCTGGTTTACCTAAAGGTGTTATGTTAACACATGAAAATTTAGTTACAACAATATCACAGTTAGTTGACGGTGAAAATCCACACCAATACACAAACTACGAGGATGTCTTACTCTGTGTGTTACCTATGTTTCATATCTATGCACTAAATTCGATTTTACTATGTGGTATTCGTTCTGGTGCTGCTGTTTTAATTGTTGAGAAATTTGAGATAACTAAGGTTTTGGAACTTATTGAAAAGTATAAGGTGACGGTAGCGTCGTTTGTGCCACCAATTGTTTTAGCATTGGTAAAAAGTGGGGAATCTATGAGATACGATTTGTCGTCTATTAGAGTGATGATAACTGGTGCTGCTCCCATGGGAATGGAACTTGAACAAGCTGTTAAGGATAGGTTGCCACGAACTGTACTTGGACAGGGATATGGGATGACAGAGGCAGGACCACTTTCAATTAGCTTGGCATTTGCAAAGGAACCATTCAAGACAAAGCCTGGTGCATGTGGCACAGTCGTCAGAAACGCTGAGATGAAAATAGTGGACACAGAAACTGGTGCTTCCCTTCCAAGAAACAAAGCTGGTGAAATTTGTATTAGAGGCACCAAGGTTATGAAAGGATACCTAAATGACCCGGAGGCAACAAAGAGAACTATAGACAAAGAAGGATGGCTACACACAGGTGACATTGGTTTAATTGACGACGATGATGAACTCTTCATTGTTGATCGGTTGAAAGAATTGATTAAATACAAAGGATACCAAGTAGCTCCTGCTGAGCTCGAAGCATTGTTGATTGCTCATCCAAACATTTCTGATGCTGCTGTCGTACCATTGAAAGATGAAGTTGCTGGAGAAGTTCCAGTTGCATTTGTTGTAAGATCAAATGGTTCAAAGATCAGTGAGGATGAAATCAAGCAATACATATCACAACAGGTTGTATTTTACAAGAGAATAAACAGAGTTTACTTCACAGAAACTATTCCTAAAGCTGCCTCAGGAAAAATTCTGCGAAAGGAATTAACTGCAAGACTTAACGAAGGTCTGGCACGAATTAAGTCCATGTGA
Protein sequence

>Msa1334030

MLPSPSPPQQEQKQEFIFRSKLPDIEIPTHLPLHSYCFQNLSQFNNRPCLINGDTGETLTYSDVHLTVRKIAAGLNTLGIQQGDVIMIVLRNSPQFALTFLGASFRGAVITTANPFYTSSELAKQATATKTKLIVTQSAYLNKINDFAKLNDIKIVCIDSSPEEDERVVDFSVLTNADENELPEVKINPNDVVALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNYEDVLLCVLPMFHIYALNSILLCGIRSGAAVLIVEKFEITKVLELIEKYKVTVASFVPPIVLALVKSGESMRYDLSSIRVMITGAAPMGMELEQAVKDRLPRTVLGQGYGMTEAGPLSISLAFAKEPFKTKPGACGTVVRNAEMKIVDTETGASLPRNKAGEICIRGTKVMKGYLNDPEATKRTIDKEGWLHTGDIGLIDDDDELFIVDRLKELIKYKGYQVAPAELEALLIAHPNISDAAVVPLKDEVAGEVPVAFVVRSNGSKISEDEIKQYISQQVVFYKRINRVYFTETIPKAASGKILRKELTARLNEGLARIKSM*