Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221390 | XP_003610174.2 | 95.652 | 414 | 15 | 2 | 1 | 414 | 1 | 411 | 0.0 | 819 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221390 | sp|O14162|YE7A_SCHPO | 27.869 | 244 | 127 | 9 | 77 | 311 | 306 | 509 | 4.35e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221390 | A0A396IIT9 | 95.652 | 414 | 15 | 2 | 1 | 414 | 1 | 411 | 0.0 | 819 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1221390 | Msa1333910 | 0.897602 | 1.198736e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221390 | MtrunA17_Chr4g0072801 | 95.652 | 414 | 15 | 2 | 1 | 414 | 1 | 411 | 0.0 | 819 |
| Msa1221390 | MtrunA17_Chr0c06g0493481 | 76.301 | 346 | 82 | 0 | 67 | 412 | 71 | 416 | 0.0 | 558 |
| Msa1221390 | MtrunA17_Chr3g0140681 | 53.525 | 383 | 159 | 7 | 41 | 412 | 23 | 397 | 8.27e-140 | 405 |
| Msa1221390 | MtrunA17_Chr1g0170451 | 54.006 | 337 | 141 | 3 | 77 | 413 | 31 | 353 | 8.31e-121 | 355 |
| Msa1221390 | MtrunA17_Chr8g0379001 | 45.531 | 358 | 168 | 6 | 75 | 412 | 88 | 438 | 3.20e-95 | 293 |
| Msa1221390 | MtrunA17_Chr2g0283771 | 44.675 | 338 | 169 | 5 | 75 | 399 | 82 | 414 | 1.07e-86 | 270 |
| Msa1221390 | MtrunA17_Chr7g0214251 | 51.724 | 87 | 39 | 2 | 145 | 231 | 43 | 126 | 2.15e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221390 | AT4G25770.1 | 67.847 | 339 | 95 | 3 | 75 | 412 | 91 | 416 | 2.17e-163 | 466 |
| Msa1221390 | AT4G25770.2 | 64.095 | 337 | 107 | 3 | 75 | 410 | 91 | 414 | 2.27e-149 | 430 |
| Msa1221390 | AT1G10040.1 | 56.305 | 341 | 137 | 4 | 75 | 412 | 79 | 410 | 3.48e-129 | 379 |
| Msa1221390 | AT5G51180.2 | 54.286 | 350 | 136 | 6 | 64 | 412 | 29 | 355 | 5.16e-120 | 353 |
| Msa1221390 | AT5G51180.1 | 54.286 | 350 | 136 | 6 | 64 | 412 | 29 | 355 | 5.16e-120 | 353 |
| Msa1221390 | AT1G10040.2 | 55.452 | 321 | 131 | 4 | 75 | 392 | 79 | 390 | 2.99e-118 | 350 |
| Msa1221390 | AT1G29120.8 | 43.526 | 363 | 174 | 6 | 66 | 411 | 94 | 442 | 1.18e-90 | 281 |
| Msa1221390 | AT1G29120.1 | 43.526 | 363 | 174 | 6 | 66 | 411 | 93 | 441 | 1.44e-90 | 281 |
| Msa1221390 | AT1G29120.2 | 43.526 | 363 | 174 | 6 | 66 | 411 | 93 | 441 | 1.44e-90 | 281 |
| Msa1221390 | AT1G29120.5 | 43.132 | 364 | 175 | 7 | 66 | 411 | 93 | 442 | 1.82e-87 | 273 |
| Msa1221390 | AT1G29120.7 | 43.714 | 350 | 166 | 6 | 66 | 398 | 93 | 428 | 3.47e-86 | 269 |
| Msa1221390 | AT1G29120.3 | 48.148 | 270 | 126 | 5 | 66 | 335 | 93 | 348 | 1.32e-78 | 248 |
| Msa1221390 | AT1G29120.4 | 48.148 | 270 | 126 | 5 | 66 | 335 | 93 | 348 | 1.51e-78 | 248 |
| Msa1221390 | AT1G29120.6 | 46.639 | 238 | 114 | 4 | 66 | 303 | 93 | 317 | 1.79e-67 | 217 |
Find 103 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGAATGAATTCGTTTC+TGG | 0.111088 | 8_1:-84950507 | Msa1221390:exon |
| CCTACTGACAACAGATATAT+TGG | 0.248979 | 8_1:-84945026 | Msa1221390:three_prime_UTR |
| TGGCTCTAAACCAGCGATTC+TGG | 0.256377 | 8_1:+84948779 | None:intergenic |
| CACCTTGTCATCATGGTTAA+TGG | 0.263443 | 8_1:-84950272 | Msa1221390:CDS |
| TCTTCAAAATTGACATTTGA+TGG | 0.269567 | 8_1:-84949190 | Msa1221390:CDS |
| GCACTATTATCATCTACTTT+GGG | 0.275400 | 8_1:+84950320 | None:intergenic |
| CGGTGGACGATGACTTTATC+TGG | 0.282358 | 8_1:+84950089 | None:intergenic |
| AATGAATTCGTTTCTGGTTT+GGG | 0.288219 | 8_1:-84950501 | Msa1221390:CDS |
| ATTTGATGGTGTTGATACTA+TGG | 0.293233 | 8_1:-84949176 | Msa1221390:CDS |
| AAATTTCATCGTCGACGATT+TGG | 0.298051 | 8_1:-84950368 | Msa1221390:CDS |
| AACTTCGGCTTCTAATGTTT+TGG | 0.303374 | 8_1:+84948872 | None:intergenic |
| GAATGAATTCGTTTCTGGTT+TGG | 0.313753 | 8_1:-84950502 | Msa1221390:CDS |
| GTGTGAACATATGGACTATT+AGG | 0.321730 | 8_1:+84945071 | None:intergenic |
| AACGTTAATATATGCTTTGT+TGG | 0.329433 | 8_1:+84946752 | None:intergenic |
| GGCACATTCTTTGGGAGGCT+TGG | 0.330760 | 8_1:-84948931 | Msa1221390:CDS |
| CAAACTGCACATTTAATTGT+AGG | 0.343395 | 8_1:-84947573 | Msa1221390:CDS |
| TTTGTCTATACATAAATAAA+GGG | 0.344805 | 8_1:+84950603 | None:intergenic |
| CCATCATCATCATTATTATT+CGG | 0.347160 | 8_1:-84950425 | Msa1221390:CDS |
| AGCACTATTATCATCTACTT+TGG | 0.350456 | 8_1:+84950319 | None:intergenic |
| TTTGAGATGCTCTTCTTTCA+AGG | 0.353953 | 8_1:+84947592 | None:intergenic |
| TTGTAGCTTCCATTTCTTTG+TGG | 0.358068 | 8_1:-84947624 | Msa1221390:intron |
| GGGGTCTCACTCAGGTTCAT+TGG | 0.376799 | 8_1:-84945522 | Msa1221390:CDS |
| AGTTCTGCTGATTGGAGATA+TGG | 0.382588 | 8_1:-84950137 | Msa1221390:CDS |
| TCTATTGTCAGACGCTGGCC+TGG | 0.397053 | 8_1:-84948975 | Msa1221390:CDS |
| CATTTAATTGTAGGGAGAAC+TGG | 0.400593 | 8_1:-84947564 | Msa1221390:CDS |
| ACCTTTGCCACGCCGCATCT+TGG | 0.416476 | 8_1:-84948744 | Msa1221390:CDS |
| CAATATATAGTGTGAACATA+TGG | 0.417623 | 8_1:+84945062 | None:intergenic |
| GGGTTAATTGTTTCTTGCAC+TGG | 0.421899 | 8_1:-84945005 | Msa1221390:three_prime_UTR |
| TCCTCCTCACCTTGTCATCA+TGG | 0.426931 | 8_1:-84950279 | Msa1221390:CDS |
| ACATTCTTTGGGAGGCTTGG+TGG | 0.430561 | 8_1:-84948928 | Msa1221390:CDS |
| AAAGGAATGCCACAAAGAAA+TGG | 0.436032 | 8_1:+84947615 | None:intergenic |
| GCAAAGGTTATAAAGTTCAT+TGG | 0.449119 | 8_1:+84948759 | None:intergenic |
| CTATTGTCAGACGCTGGCCT+GGG | 0.450168 | 8_1:-84948974 | Msa1221390:CDS |
| GATGACAAGGTGAGGAGGAA+TGG | 0.454449 | 8_1:+84950283 | None:intergenic |
| AGAAAGAGAGAAAGCTGAGT+TGG | 0.456978 | 8_1:-84950580 | Msa1221390:five_prime_UTR |
| TGGTTAATGGCATTGTTGGC+AGG | 0.459526 | 8_1:-84950259 | Msa1221390:intron |
| GGGTCTCACTCAGGTTCATT+GGG | 0.459640 | 8_1:-84945521 | Msa1221390:CDS |
| TTCCTCACGGACAACGATGA+TGG | 0.467217 | 8_1:-84947531 | Msa1221390:CDS |
| CATCAGAATCCTCAATCATT+CGG | 0.469799 | 8_1:+84947490 | None:intergenic |
| ATGACAAGGTGAGGAGGAAT+GGG | 0.470142 | 8_1:+84950284 | None:intergenic |
| ATAAATAATCAACTCAATAG+TGG | 0.475792 | 8_1:+84944966 | None:intergenic |
| TCTTCTCCTCCGAATGATTG+AGG | 0.484935 | 8_1:-84947499 | Msa1221390:CDS |
| GATGCTCTTCTTTCAAGGAA+AGG | 0.488436 | 8_1:+84947597 | None:intergenic |
| TTTCATCGTCGACGATTTGG+TGG | 0.490107 | 8_1:-84950365 | Msa1221390:CDS |
| CATTATGAAGCCAGAATCGC+TGG | 0.492987 | 8_1:-84948789 | Msa1221390:CDS |
| CTACTGACAACAGATATATT+GGG | 0.494392 | 8_1:-84945025 | Msa1221390:three_prime_UTR |
| GAAAACCTACTGGTTGCATT+CGG | 0.496407 | 8_1:-84945243 | Msa1221390:CDS |
| TTTGCAGTCACAATTTCTGC+AGG | 0.496865 | 8_1:+84948848 | None:intergenic |
| AAAGAGATCTTCTGCAACCC+AGG | 0.497559 | 8_1:+84948957 | None:intergenic |
| ATCATGGTTAATGGCATTGT+TGG | 0.501862 | 8_1:-84950263 | Msa1221390:CDS |
| GATGGAGCACCTCATCAATT+CGG | 0.503206 | 8_1:-84946951 | Msa1221390:CDS |
| AAACTGCACATTTAATTGTA+GGG | 0.504974 | 8_1:-84947572 | Msa1221390:CDS |
| CCGAATAATAATGATGATGA+TGG | 0.510234 | 8_1:+84950425 | None:intergenic |
| ACAATTTCTGCAGGTAACTT+CGG | 0.511380 | 8_1:+84948857 | None:intergenic |
| CACTATTATCATCTACTTTG+GGG | 0.522847 | 8_1:+84950321 | None:intergenic |
| TTTGCAATACAAGACATTGC+CGG | 0.524053 | 8_1:+84945170 | None:intergenic |
| ACTTGTGTTGAAGATATGGT+TGG | 0.526168 | 8_1:-84946973 | Msa1221390:intron |
| AATCTCAGGTGAAAACCTAC+TGG | 0.526558 | 8_1:-84945253 | Msa1221390:intron |
| ACCAAGATGCGGCGTGGCAA+AGG | 0.535141 | 8_1:+84948743 | None:intergenic |
| TAACTTCCTTATCTAGTCTC+CGG | 0.537427 | 8_1:-84945189 | Msa1221390:exon |
| CACATTGTACACACTGAAGG+TGG | 0.538544 | 8_1:-84946792 | Msa1221390:CDS |
| ACCTACTGGTTGCATTCGGA+TGG | 0.540251 | 8_1:-84945239 | Msa1221390:CDS |
| GATGATAAGGGGTCTCACTC+AGG | 0.541264 | 8_1:-84945530 | Msa1221390:CDS |
| CCAATATATCTGTTGTCAGT+AGG | 0.545616 | 8_1:+84945026 | None:intergenic |
| TTTGTGGCACATTCTTTGGG+AGG | 0.547005 | 8_1:-84948936 | Msa1221390:CDS |
| AAAGCATATATTAACGTTGG+AGG | 0.550261 | 8_1:-84946747 | Msa1221390:CDS |
| AACAAAGCATATATTAACGT+TGG | 0.554028 | 8_1:-84946750 | Msa1221390:CDS |
| TACTGCTCACAGTACAATCC+AGG | 0.559859 | 8_1:-84945458 | Msa1221390:intron |
| GGGTGAGAGGCTAGCTGAAG+AGG | 0.564032 | 8_1:-84949155 | Msa1221390:intron |
| TCAGGTTCATTGGGAGCGTG+TGG | 0.573997 | 8_1:-84945512 | Msa1221390:CDS |
| GGCCAGAAAATTGACATGGA+AGG | 0.577554 | 8_1:-84946726 | Msa1221390:intron |
| TGGTTCAAGAGGACATAGAC+AGG | 0.585186 | 8_1:-84948724 | Msa1221390:intron |
| ACGCCGCATCTTGGTTCAAG+AGG | 0.588632 | 8_1:-84948735 | Msa1221390:CDS |
| TCAATCATTCGGAGGAGAAG+AGG | 0.590800 | 8_1:+84947501 | None:intergenic |
| CAGAAATTGTGACTGCAAAG+AGG | 0.591218 | 8_1:-84948844 | Msa1221390:CDS |
| TTTGTAGAGGAGATGATAAG+GGG | 0.598296 | 8_1:-84945541 | Msa1221390:intron |
| GCAATTACAAGGACTTCTGA+AGG | 0.598403 | 8_1:+84944940 | None:intergenic |
| TTCCATCATCGTTGTCCGTG+AGG | 0.608229 | 8_1:+84947529 | None:intergenic |
| GGAAGTTATCTATCATGTGA+AGG | 0.612715 | 8_1:+84945204 | None:intergenic |
| GTGCGGAGCAGTTTCTCAAG+AGG | 0.613223 | 8_1:-84950115 | Msa1221390:CDS |
| TTTGATGGTGTTGATACTAT+GGG | 0.613394 | 8_1:-84949175 | Msa1221390:CDS |
| TACTATCTATTGTCAGACGC+TGG | 0.614523 | 8_1:-84948980 | Msa1221390:CDS |
| ACATTGCCGGAGACTAGATA+AGG | 0.614588 | 8_1:+84945183 | None:intergenic |
| GCGTCAACATGAACTTCCAA+AGG | 0.625059 | 8_1:-84946929 | Msa1221390:intron |
| CCTTCAGTGTGTACAATGTG+TGG | 0.626797 | 8_1:+84946795 | None:intergenic |
| ACCATGATGACAAGGTGAGG+AGG | 0.632986 | 8_1:+84950278 | None:intergenic |
| GTGTTGAAGATATGGTTGGA+TGG | 0.633558 | 8_1:-84946969 | Msa1221390:intron |
| CCACACATTGTACACACTGA+AGG | 0.635968 | 8_1:-84946795 | Msa1221390:CDS |
| ATCATTCGGAGGAGAAGAGG+AGG | 0.636999 | 8_1:+84947504 | None:intergenic |
| ACATTGTACACACTGAAGGT+GGG | 0.643420 | 8_1:-84946791 | Msa1221390:CDS |
| ATGTTGACGCCGAATTGATG+AGG | 0.645392 | 8_1:+84946942 | None:intergenic |
| TGCCATTAACCATGATGACA+AGG | 0.651118 | 8_1:+84950270 | None:intergenic |
| ATAATGATGATGATGGCGTA+AGG | 0.658967 | 8_1:+84950432 | None:intergenic |
| TGGAGGCCAGAAAATTGACA+TGG | 0.659078 | 8_1:-84946730 | Msa1221390:CDS |
| CAGAATCCTCAATCATTCGG+AGG | 0.663768 | 8_1:+84947493 | None:intergenic |
| TGTCCTCTTGAACCAAGATG+CGG | 0.666886 | 8_1:+84948732 | None:intergenic |
| CTTCAGTGTGTACAATGTGT+GGG | 0.669488 | 8_1:+84946796 | None:intergenic |
| TTAACCATGATGACAAGGTG+AGG | 0.670354 | 8_1:+84950275 | None:intergenic |
| TGCTGATTGGAGATATGGTG+CGG | 0.674450 | 8_1:-84950132 | Msa1221390:CDS |
| TCTTGAACCAAGATGCGGCG+TGG | 0.680746 | 8_1:+84948737 | None:intergenic |
| ACCATCCGAATGCAACCAGT+AGG | 0.686623 | 8_1:+84945238 | None:intergenic |
| GTGTTGATACTATGGGTGAG+AGG | 0.693331 | 8_1:-84949168 | Msa1221390:CDS |
| GCTTTCAGAAGAGTAAACAG+CGG | 0.740467 | 8_1:-84945483 | Msa1221390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCTAAAATAAATCTTT+GGG | + | chr8_1:84947603-84947622 | None:intergenic | 10.0% |
| !! | TAAATAATCAAAATATACAT+AGG | + | chr8_1:84947815-84947834 | None:intergenic | 10.0% |
| !! | TTTAAATTTATAGTAAGTAA+TGG | - | chr8_1:84949415-84949434 | Msa1221390:intron | 10.0% |
| !!! | TTCTTTTATTTTATTATATC+TGG | - | chr8_1:84949643-84949662 | Msa1221390:intron | 10.0% |
| !!! | ATCTTTTTTTTTTTTAAACT+CGG | + | chr8_1:84949769-84949788 | None:intergenic | 10.0% |
| !!! | TAAGAAAAGATTCATTTTTT+AGG | - | chr8_1:84945773-84945792 | Msa1221390:intron | 15.0% |
| !!! | TTCTTTTATAATAATTCACA+AGG | + | chr8_1:84946277-84946296 | None:intergenic | 15.0% |
| !!! | GTAATTTTAATGATATATTG+TGG | - | chr8_1:84946308-84946327 | Msa1221390:intron | 15.0% |
| !!! | CAATTTCTAAAATAAATCTT+TGG | + | chr8_1:84947604-84947623 | None:intergenic | 15.0% |
| !!! | ATTTGAAATTATACAAACAA+CGG | - | chr8_1:84947694-84947713 | Msa1221390:intron | 15.0% |
| !! | CATTAACAATTTAATTGAAT+TGG | + | chr8_1:84948144-84948163 | None:intergenic | 15.0% |
| !! | GAAAAAAATATATGAAGTAT+AGG | - | chr8_1:84949052-84949071 | Msa1221390:intron | 15.0% |
| !! | TTTAGAAACATATTATATGA+AGG | + | chr8_1:84949131-84949150 | None:intergenic | 15.0% |
| !! | CTATAAATTTAAATAACAGT+AGG | + | chr8_1:84949408-84949427 | None:intergenic | 15.0% |
| !!! | TGTAATTTAAATTGCAATTT+TGG | - | chr8_1:84949564-84949583 | Msa1221390:intron | 15.0% |
| !!! | GTAATTTAAATTGCAATTTT+GGG | - | chr8_1:84949565-84949584 | Msa1221390:intron | 15.0% |
| !! | AAAAAAAAGATTTAACAACT+TGG | - | chr8_1:84949778-84949797 | Msa1221390:intron | 15.0% |
| !!! | TTTGTTTACTTTTAATTATC+TGG | + | chr8_1:84949831-84949850 | None:intergenic | 15.0% |
| !!! | ACTAATTCATCATATTTTGT+GGG | + | chr8_1:84945626-84945645 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGATTCCTTTTTT+AGG | + | chr8_1:84945862-84945881 | None:intergenic | 20.0% |
| !! | AAGTGTAAACAATATTATTG+TGG | - | chr8_1:84946123-84946142 | Msa1221390:intron | 20.0% |
| !!! | ATTGTGGATTTTCATATAAA+TGG | - | chr8_1:84946139-84946158 | Msa1221390:intron | 20.0% |
| !! | AATGTGAATGAATTATCATA+AGG | + | chr8_1:84946500-84946519 | None:intergenic | 20.0% |
| !!! | ACATGAATTAAGTTTAAAAC+TGG | + | chr8_1:84946530-84946549 | None:intergenic | 20.0% |
| !! | AACTTAATTCATGTTTATCT+AGG | - | chr8_1:84946536-84946555 | Msa1221390:intron | 20.0% |
| !!! | TAAAACATTTTACTTCAAGT+TGG | + | chr8_1:84947018-84947037 | None:intergenic | 20.0% |
| !!! | TCACCTTTTCATTTTATTAA+AGG | - | chr8_1:84947654-84947673 | Msa1221390:intron | 20.0% |
| !!! | CACCTTTTCATTTTATTAAA+GGG | - | chr8_1:84947655-84947674 | Msa1221390:intron | 20.0% |
| !! | TTCCCTTTAATAAAATGAAA+AGG | + | chr8_1:84947660-84947679 | None:intergenic | 20.0% |
| !! | GTTGTTTGTATAATTTCAAA+TGG | + | chr8_1:84947695-84947714 | None:intergenic | 20.0% |
| !! | TATAACAAACTTAAATGACT+CGG | + | chr8_1:84948098-84948117 | None:intergenic | 20.0% |
| !! | ATATTGAAATTGTCTTAACT+GGG | - | chr8_1:84948384-84948403 | Msa1221390:intron | 20.0% |
| !! | TACATCATTGTAACAATATA+TGG | + | chr8_1:84948497-84948516 | None:intergenic | 20.0% |
| !! | AGGTTAATTATTTCAAAGTT+AGG | + | chr8_1:84949500-84949519 | None:intergenic | 20.0% |
| !! | CTATATGTTAAAATTTGGTA+GGG | + | chr8_1:84949713-84949732 | None:intergenic | 20.0% |
| !! | TTCGATAATTATTAATCTAC+TGG | - | chr8_1:84949857-84949876 | Msa1221390:intron | 20.0% |
| !! | TATAAGATAAAAACTTTACC+TGG | + | chr8_1:84950102-84950121 | None:intergenic | 20.0% |
| !! | AACAGACAAATAAAATATCA+CGG | + | chr8_1:84950263-84950282 | None:intergenic | 20.0% |
| !! | ATAAATAATCAACTCAATAG+TGG | + | chr8_1:84950576-84950595 | None:intergenic | 20.0% |
| ! | CCATCATCATCATTATTATT+CGG | - | chr8_1:84945114-84945133 | Msa1221390:three_prime_UTR | 25.0% |
| !! | TATCTACAGAGATTTTCTTA+CGG | + | chr8_1:84945473-84945492 | None:intergenic | 25.0% |
| ! | CATTGTATATGTAATTCACA+CGG | - | chr8_1:84945498-84945517 | Msa1221390:CDS | 25.0% |
| !! | GACTAATTCATCATATTTTG+TGG | + | chr8_1:84945627-84945646 | None:intergenic | 25.0% |
| !! | AGTTTTGCATATATGGATTT+AGG | - | chr8_1:84945721-84945740 | Msa1221390:intron | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | + | chr8_1:84945872-84945891 | None:intergenic | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | - | chr8_1:84945872-84945891 | Msa1221390:intron | 25.0% |
| ! | CTTTGTATGTATCTAATTGT+TGG | - | chr8_1:84945967-84945986 | Msa1221390:intron | 25.0% |
| ! | GTCAAATTATGGTATAACAA+GGG | + | chr8_1:84946056-84946075 | None:intergenic | 25.0% |
| ! | TGTCAAATTATGGTATAACA+AGG | + | chr8_1:84946057-84946076 | None:intergenic | 25.0% |
| ! | CAAAATCATCTGTCAAATTA+TGG | + | chr8_1:84946067-84946086 | None:intergenic | 25.0% |
| !! | TTGAAAATAGCTTCTCATTT+TGG | - | chr8_1:84946169-84946188 | Msa1221390:intron | 25.0% |
| ! | TTTAATGATATATTGTGGAC+AGG | - | chr8_1:84946313-84946332 | Msa1221390:intron | 25.0% |
| ! | TCTTCAAAATTGACATTTGA+TGG | - | chr8_1:84946349-84946368 | Msa1221390:intron | 25.0% |
| !! | CCAAAGTAATTTAAAGTTCA+GGG | + | chr8_1:84946453-84946472 | None:intergenic | 25.0% |
| !! | TCCAAAGTAATTTAAAGTTC+AGG | + | chr8_1:84946454-84946473 | None:intergenic | 25.0% |
| ! | ACTAATAACACAAATCTCTA+AGG | + | chr8_1:84947134-84947153 | None:intergenic | 25.0% |
| !! | AGATTTGTGTTATTAGTATG+AGG | - | chr8_1:84947137-84947156 | Msa1221390:intron | 25.0% |
| ! | AGAGAAAACCATAAATCATA+GGG | - | chr8_1:84947160-84947179 | Msa1221390:intron | 25.0% |
| !!! | ATATTAAGTGGTTTTTGAGA+AGG | + | chr8_1:84947286-84947305 | None:intergenic | 25.0% |
| ! | AATTACTAATCTTCAGTTGA+TGG | + | chr8_1:84947333-84947352 | None:intergenic | 25.0% |
| !!! | TTATTTAATTTGTAGCAGCT+TGG | - | chr8_1:84947828-84947847 | Msa1221390:intron | 25.0% |
| !!! | TATTTAATTTGTAGCAGCTT+GGG | - | chr8_1:84947829-84947848 | Msa1221390:intron | 25.0% |
| !! | ATTTATGCTCCTTAATTTTC+CGG | - | chr8_1:84947889-84947908 | Msa1221390:intron | 25.0% |
| ! | AAACTGCACATTTAATTGTA+GGG | - | chr8_1:84947967-84947986 | Msa1221390:intron | 25.0% |
| ! | TAAATTGTTAATGATTGTGC+AGG | - | chr8_1:84948151-84948170 | Msa1221390:intron | 25.0% |
| ! | AAGACATCTAATTTGAAAAG+AGG | + | chr8_1:84948236-84948255 | None:intergenic | 25.0% |
| !! | TGATAATGATATAGTGTCAA+TGG | - | chr8_1:84948295-84948314 | Msa1221390:intron | 25.0% |
| ! | GATATTGAAATTGTCTTAAC+TGG | - | chr8_1:84948383-84948402 | Msa1221390:intron | 25.0% |
| ! | TATTGAAATTGTCTTAACTG+GGG | - | chr8_1:84948385-84948404 | Msa1221390:intron | 25.0% |
| !! | CTCAATCTTAATGTTTTACA+TGG | - | chr8_1:84948652-84948671 | Msa1221390:intron | 25.0% |
| ! | AACGTTAATATATGCTTTGT+TGG | + | chr8_1:84948790-84948809 | None:intergenic | 25.0% |
| ! | AACAAAGCATATATTAACGT+TGG | - | chr8_1:84948789-84948808 | Msa1221390:CDS | 25.0% |
| !!! | AGACAGTTTTTATTTCTTAC+AGG | + | chr8_1:84948852-84948871 | None:intergenic | 25.0% |
| ! | ATATTATATGAAGGTCCAAA+CGG | + | chr8_1:84949122-84949141 | None:intergenic | 25.0% |
| !!! | GATACTTTTTTGTAGAGAAA+AGG | - | chr8_1:84949238-84949257 | Msa1221390:intron | 25.0% |
| !!! | AAAGGATATTTTGATAACTG+TGG | - | chr8_1:84949256-84949275 | Msa1221390:intron | 25.0% |
| !!! | CTAGGAAAATTTGTTTTTCT+TGG | - | chr8_1:84949359-84949378 | Msa1221390:intron | 25.0% |
| !!! | TGTATGATTTTAGTTTCTGA+TGG | - | chr8_1:84949458-84949477 | Msa1221390:intron | 25.0% |
| ! | GCTATATGTTAAAATTTGGT+AGG | + | chr8_1:84949714-84949733 | None:intergenic | 25.0% |
| ! | AGTGGCTATATGTTAAAATT+TGG | + | chr8_1:84949718-84949737 | None:intergenic | 25.0% |
| !!! | AATTTTAACATATAGCCACT+TGG | - | chr8_1:84949718-84949737 | Msa1221390:intron | 25.0% |
| !! | GTTTTTATCTTATAGCTTTC+CGG | - | chr8_1:84950108-84950127 | Msa1221390:CDS | 25.0% |
| !!! | TACAGTATTTTTGTATGTCT+TGG | - | chr8_1:84950395-84950414 | Msa1221390:CDS | 25.0% |
| ! | CAATATATAGTGTGAACATA+TGG | + | chr8_1:84950480-84950499 | None:intergenic | 25.0% |
| GACAACAACTGAAAAAACAA+AGG | - | chr8_1:84945015-84945034 | Msa1221390:three_prime_UTR | 30.0% | |
| !! | AATGAATTCGTTTCTGGTTT+GGG | - | chr8_1:84945038-84945057 | Msa1221390:three_prime_UTR | 30.0% |
| ! | CCGAATAATAATGATGATGA+TGG | + | chr8_1:84945117-84945136 | None:intergenic | 30.0% |
| CACTATTATCATCTACTTTG+GGG | + | chr8_1:84945221-84945240 | None:intergenic | 30.0% | |
| GCACTATTATCATCTACTTT+GGG | + | chr8_1:84945222-84945241 | None:intergenic | 30.0% | |
| AGCACTATTATCATCTACTT+TGG | + | chr8_1:84945223-84945242 | None:intergenic | 30.0% | |
| CAATATGATTATGAGAGTGA+AGG | + | chr8_1:84945318-84945337 | None:intergenic | 30.0% | |
| AAACTACAACCAAATGCATT+TGG | - | chr8_1:84945372-84945391 | Msa1221390:intron | 30.0% | |
| CTGAAAATTCCAAATGCATT+TGG | + | chr8_1:84945384-84945403 | None:intergenic | 30.0% | |
| ! | ATATTTTGTGGGACCTAAAT+AGG | + | chr8_1:84945615-84945634 | None:intergenic | 30.0% |
| ! | GAGCTAAAGTTTTGCATATA+TGG | - | chr8_1:84945714-84945733 | Msa1221390:intron | 30.0% |
| CATTGAGTAGTTAATGTATC+TGG | + | chr8_1:84945837-84945856 | None:intergenic | 30.0% | |
| CTACTCAATGAACCTAAAAA+AGG | - | chr8_1:84945847-84945866 | Msa1221390:intron | 30.0% | |
| TTATTGATGCTCAAGTATGA+AGG | - | chr8_1:84945921-84945940 | Msa1221390:intron | 30.0% | |
| AAAAAACTCGTGAATTGACT+TGG | - | chr8_1:84945996-84946015 | Msa1221390:intron | 30.0% | |
| CAAATATAAGTGACAGTAAC+AGG | - | chr8_1:84946205-84946224 | Msa1221390:intron | 30.0% | |
| !! | ATTTGATGGTGTTGATACTA+TGG | - | chr8_1:84946363-84946382 | Msa1221390:intron | 30.0% |
| !! | TTTGATGGTGTTGATACTAT+GGG | - | chr8_1:84946364-84946383 | Msa1221390:intron | 30.0% |
| ! | TAGTTGCAATTTGATCCTTT+TGG | - | chr8_1:84946415-84946434 | Msa1221390:intron | 30.0% |
| CCCTGAACTTTAAATTACTT+TGG | - | chr8_1:84946450-84946469 | Msa1221390:intron | 30.0% | |
| ! | TTTGGAGTAATCAAAAAGTC+TGG | + | chr8_1:84946652-84946671 | None:intergenic | 30.0% |
| GCAAAGGTTATAAAGTTCAT+TGG | + | chr8_1:84946783-84946802 | None:intergenic | 30.0% | |
| !!! | AGGTAGCTTTAAGTTTTCTA+TGG | - | chr8_1:84946835-84946854 | Msa1221390:intron | 30.0% |
| AGCTTAAAATTGCATACAAG+AGG | - | chr8_1:84947054-84947073 | Msa1221390:intron | 30.0% | |
| ! | ACAAATCTCTAAGGAAACAA+GGG | + | chr8_1:84947125-84947144 | None:intergenic | 30.0% |
| GAGAGAAAACCATAAATCAT+AGG | - | chr8_1:84947159-84947178 | Msa1221390:intron | 30.0% | |
| GTATCAAAGTTTAATTGCGA+AGG | + | chr8_1:84947225-84947244 | None:intergenic | 30.0% | |
| ATGGATCATGTCATATTAAG+TGG | + | chr8_1:84947298-84947317 | None:intergenic | 30.0% | |
| TTTGGCAACGAAAACAATTT+AGG | + | chr8_1:84947476-84947495 | None:intergenic | 30.0% | |
| GATATCTGGCAAAATTCATT+TGG | + | chr8_1:84947494-84947513 | None:intergenic | 30.0% | |
| ! | ATTTTGCCAGATATCTTCAT+AGG | - | chr8_1:84947499-84947518 | Msa1221390:CDS | 30.0% |
| ! | TTTGTTGTACGAGCTAAAAA+TGG | - | chr8_1:84947729-84947748 | Msa1221390:intron | 30.0% |
| !! | ATTTAATTTGTAGCAGCTTG+GGG | - | chr8_1:84947830-84947849 | Msa1221390:intron | 30.0% |
| ! | TAAGGAGCATAAATAAGAGA+CGG | + | chr8_1:84947883-84947902 | None:intergenic | 30.0% |
| CAAACTGCACATTTAATTGT+AGG | - | chr8_1:84947966-84947985 | Msa1221390:intron | 30.0% | |
| CAAATTGTACTGAAGCTTAA+TGG | - | chr8_1:84948271-84948290 | Msa1221390:intron | 30.0% | |
| AAGAAAATAATTAGCTCGTG+TGG | + | chr8_1:84948470-84948489 | None:intergenic | 30.0% | |
| ! | CATCAGAAAGTTTTTACCTT+TGG | + | chr8_1:84948629-84948648 | None:intergenic | 30.0% |
| ATTAGACTAGCAGAAAAGAA+AGG | + | chr8_1:84948700-84948719 | None:intergenic | 30.0% | |
| AAAGCATATATTAACGTTGG+AGG | - | chr8_1:84948792-84948811 | Msa1221390:CDS | 30.0% | |
| TGGTATTTGTGAAAGAAGTA+TGG | - | chr8_1:84948901-84948920 | Msa1221390:CDS | 30.0% | |
| CAAGAAGTTTACTTAAGATG+AGG | - | chr8_1:84948925-84948944 | Msa1221390:CDS | 30.0% | |
| !!! | TCAGGTTTTATTTTGCTTTC+AGG | - | chr8_1:84948959-84948978 | Msa1221390:CDS | 30.0% |
| TTTATCTTGCTGAATGTTCT+TGG | + | chr8_1:84949028-84949047 | None:intergenic | 30.0% | |
| AGCAAAGTAAAAAAGAGGAA+AGG | + | chr8_1:84949085-84949104 | None:intergenic | 30.0% | |
| TGAAGAGCAAAGTAAAAAAG+AGG | + | chr8_1:84949090-84949109 | None:intergenic | 30.0% | |
| TCTTCATGTTTATAACCGTT+TGG | - | chr8_1:84949104-84949123 | Msa1221390:intron | 30.0% | |
| ATGAAATTTCCATTGAACCT+TGG | - | chr8_1:84949304-84949323 | Msa1221390:intron | 30.0% | |
| TGAAATTTCCATTGAACCTT+GGG | - | chr8_1:84949305-84949324 | Msa1221390:intron | 30.0% | |
| GTATAGTATGTTCTTCTTGT+AGG | - | chr8_1:84949334-84949353 | Msa1221390:intron | 30.0% | |
| AGCTATAAACTTCCAAAGAA+AGG | + | chr8_1:84949530-84949549 | None:intergenic | 30.0% | |
| TTTGGAAGTTTATAGCTTAC+TGG | - | chr8_1:84949533-84949552 | Msa1221390:intron | 30.0% | |
| !!! | AAATTGCAATTTTGGGTTTC+TGG | - | chr8_1:84949572-84949591 | Msa1221390:intron | 30.0% |
| ! | AGATTTTACAAATCAGTCCA+TGG | + | chr8_1:84949616-84949635 | None:intergenic | 30.0% |
| AGACTAGAAATTGTATGCTA+GGG | + | chr8_1:84949915-84949934 | None:intergenic | 30.0% | |
| AAGACTAGAAATTGTATGCT+AGG | + | chr8_1:84949916-84949935 | None:intergenic | 30.0% | |
| !! | AAGACATATGCTTTTTGTAG+AGG | - | chr8_1:84949985-84950004 | Msa1221390:intron | 30.0% |
| ! | TTTTTGTAGAGGAGATGATA+AGG | - | chr8_1:84949996-84950015 | Msa1221390:intron | 30.0% |
| ! | TTTTGTAGAGGAGATGATAA+GGG | - | chr8_1:84949997-84950016 | Msa1221390:intron | 30.0% |
| ATTTGTCTGTTGTTAATCTC+AGG | - | chr8_1:84950272-84950291 | Msa1221390:CDS | 30.0% | |
| CTACTGACAACAGATATATT+GGG | - | chr8_1:84950514-84950533 | Msa1221390:exon | 30.0% | |
| CAAAGGAATGAATTCGTTTC+TGG | - | chr8_1:84945032-84945051 | Msa1221390:three_prime_UTR | 35.0% | |
| !! | GAATGAATTCGTTTCTGGTT+TGG | - | chr8_1:84945037-84945056 | Msa1221390:three_prime_UTR | 35.0% |
| !! | ATAATGATGATGATGGCGTA+AGG | + | chr8_1:84945110-84945129 | None:intergenic | 35.0% |
| AAATTTCATCGTCGACGATT+TGG | - | chr8_1:84945171-84945190 | Msa1221390:three_prime_UTR | 35.0% | |
| ATCATGGTTAATGGCATTGT+TGG | - | chr8_1:84945276-84945295 | Msa1221390:intron | 35.0% | |
| TATGATTATGAGAGTGAAGG+TGG | + | chr8_1:84945315-84945334 | None:intergenic | 35.0% | |
| ! | GAATTTTCAGTTCTGCTGAT+TGG | - | chr8_1:84945394-84945413 | Msa1221390:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr8_1:84945876-84945895 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr8_1:84945875-84945894 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | - | chr8_1:84945875-84945894 | Msa1221390:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | - | chr8_1:84945876-84945895 | Msa1221390:intron | 35.0% |
| TTGAGCATCAATAAACTGAC+CGG | + | chr8_1:84945915-84945934 | None:intergenic | 35.0% | |
| !! | TAGCTTCTCATTTTGGTGAA+CGG | - | chr8_1:84946176-84946195 | Msa1221390:intron | 35.0% |
| ! | TCTTTTGTGGCACATTCTTT+GGG | - | chr8_1:84946600-84946619 | Msa1221390:intron | 35.0% |
| ! | AACTTCGGCTTCTAATGTTT+TGG | + | chr8_1:84946670-84946689 | None:intergenic | 35.0% |
| ACAATTTCTGCAGGTAACTT+CGG | + | chr8_1:84946685-84946704 | None:intergenic | 35.0% | |
| AAGAAAAAATAGCAGATGCC+AGG | + | chr8_1:84946919-84946938 | None:intergenic | 35.0% | |
| !! | AGTCATCTGTGCTTTTTGAT+TGG | - | chr8_1:84946973-84946992 | Msa1221390:intron | 35.0% |
| ! | CACAAATCTCTAAGGAAACA+AGG | + | chr8_1:84947126-84947145 | None:intergenic | 35.0% |
| AAAACCATAAATCATAGGGC+TGG | - | chr8_1:84947164-84947183 | Msa1221390:intron | 35.0% | |
| ! | TTTTCCAGCCCTATGATTTA+TGG | + | chr8_1:84947171-84947190 | None:intergenic | 35.0% |
| ATAAATCATAGGGCTGGAAA+AGG | - | chr8_1:84947170-84947189 | Msa1221390:intron | 35.0% | |
| TTGATACGAAAGTTACAGAC+CGG | - | chr8_1:84947238-84947257 | Msa1221390:intron | 35.0% | |
| !! | TTGATGGTTCTGGAATCATA+TGG | + | chr8_1:84947317-84947336 | None:intergenic | 35.0% |
| !! | TAATCTTCAGTTGATGGTTC+TGG | + | chr8_1:84947327-84947346 | None:intergenic | 35.0% |
| TTCCATCATAGTCAAGCTAT+TGG | - | chr8_1:84947780-84947799 | Msa1221390:intron | 35.0% | |
| TCCATCATAGTCAAGCTATT+GGG | - | chr8_1:84947781-84947800 | Msa1221390:intron | 35.0% | |
| CTACAAGAACCGGAAAATTA+AGG | + | chr8_1:84947901-84947920 | None:intergenic | 35.0% | |
| TTGTAGCTTCCATTTCTTTG+TGG | - | chr8_1:84947915-84947934 | Msa1221390:intron | 35.0% | |
| AAAGGAATGCCACAAAGAAA+TGG | + | chr8_1:84947927-84947946 | None:intergenic | 35.0% | |
| ! | TTTGAGATGCTCTTCTTTCA+AGG | + | chr8_1:84947950-84947969 | None:intergenic | 35.0% |
| CATTTAATTGTAGGGAGAAC+TGG | - | chr8_1:84947975-84947994 | Msa1221390:intron | 35.0% | |
| ! | TGGTAAACATCTTTTCCTCA+CGG | - | chr8_1:84947995-84948014 | Msa1221390:intron | 35.0% |
| CATCAGAATCCTCAATCATT+CGG | + | chr8_1:84948052-84948071 | None:intergenic | 35.0% | |
| GTGTATTATGAAGTGCATCT+CGG | - | chr8_1:84948350-84948369 | Msa1221390:intron | 35.0% | |
| !! | CTTGACTTGTGTTGAAGATA+TGG | - | chr8_1:84948562-84948581 | Msa1221390:intron | 35.0% |
| ACTTGTGTTGAAGATATGGT+TGG | - | chr8_1:84948566-84948585 | Msa1221390:intron | 35.0% | |
| ! | AACCTTCCATGTCAATTTTC+TGG | + | chr8_1:84948818-84948837 | None:intergenic | 35.0% |
| !!! | TGTAAACCTTTTTTTGCCTC+TGG | - | chr8_1:84948881-84948900 | Msa1221390:CDS | 35.0% |
| CAAATACCAGAGGCAAAAAA+AGG | + | chr8_1:84948890-84948909 | None:intergenic | 35.0% | |
| ACTTCTTTCACAAATACCAG+AGG | + | chr8_1:84948900-84948919 | None:intergenic | 35.0% | |
| ! | GATGAGGAAATTTTCATCTC+AGG | - | chr8_1:84948941-84948960 | Msa1221390:CDS | 35.0% |
| ! | AGGATAGTCGTGCATATTTT+TGG | - | chr8_1:84948979-84948998 | Msa1221390:CDS | 35.0% |
| !!! | TAGTCGTGCATATTTTTGGT+AGG | - | chr8_1:84948983-84949002 | Msa1221390:CDS | 35.0% |
| TAGGGTAGTCAAATTCAGAT+TGG | + | chr8_1:84949695-84949714 | None:intergenic | 35.0% | |
| !! | ATATAGCCACTTGGATTAGT+CGG | - | chr8_1:84949727-84949746 | Msa1221390:intron | 35.0% |
| TTTGTAGAGGAGATGATAAG+GGG | - | chr8_1:84949998-84950017 | Msa1221390:intron | 35.0% | |
| ! | ATAGCATCAACAAGTTTTGC+CGG | + | chr8_1:84950130-84950149 | None:intergenic | 35.0% |
| !! | TAAATCCAGCTCTAGATGAA+AGG | - | chr8_1:84950164-84950183 | Msa1221390:intron | 35.0% |
| !! | AAATCCAGCTCTAGATGAAA+GGG | - | chr8_1:84950165-84950184 | Msa1221390:intron | 35.0% |
| GGAAGTTATCTATCATGTGA+AGG | + | chr8_1:84950338-84950357 | None:intergenic | 35.0% | |
| TAACTTCCTTATCTAGTCTC+CGG | - | chr8_1:84950350-84950369 | Msa1221390:CDS | 35.0% | |
| TTTGCAATACAAGACATTGC+CGG | + | chr8_1:84950372-84950391 | None:intergenic | 35.0% | |
| ! | GTGTGAACATATGGACTATT+AGG | + | chr8_1:84950471-84950490 | None:intergenic | 35.0% |
| CCAATATATCTGTTGTCAGT+AGG | + | chr8_1:84950516-84950535 | None:intergenic | 35.0% | |
| CCTACTGACAACAGATATAT+TGG | - | chr8_1:84950513-84950532 | Msa1221390:exon | 35.0% | |
| AGAAAGAGAGAAAGCTGAGT+TGG | - | chr8_1:84944959-84944978 | Msa1221390:three_prime_UTR | 40.0% | |
| !! | GATCTCTTCTCATCGCTTTT+TGG | - | chr8_1:84945136-84945155 | Msa1221390:three_prime_UTR | 40.0% |
| TTAACCATGATGACAAGGTG+AGG | + | chr8_1:84945267-84945286 | None:intergenic | 40.0% | |
| CACCTTGTCATCATGGTTAA+TGG | - | chr8_1:84945267-84945286 | Msa1221390:intron | 40.0% | |
| TGCCATTAACCATGATGACA+AGG | + | chr8_1:84945272-84945291 | None:intergenic | 40.0% | |
| ! | AGTTCTGCTGATTGGAGATA+TGG | - | chr8_1:84945402-84945421 | Msa1221390:intron | 40.0% |
| ! | CTACAGAGATTTTCTTACGG+TGG | + | chr8_1:84945470-84945489 | None:intergenic | 40.0% |
| ! | TTCAAGTTCAAACCCAAGCT+TGG | - | chr8_1:84945550-84945569 | Msa1221390:intron | 40.0% |
| ! | AGAGATTTTGCCGCCTATTT+AGG | - | chr8_1:84945599-84945618 | Msa1221390:intron | 40.0% |
| ! | TTTTGTGGGACCTAAATAGG+CGG | + | chr8_1:84945612-84945631 | None:intergenic | 40.0% |
| AGGATAACTATTACTCCCTC+CGG | - | chr8_1:84945741-84945760 | Msa1221390:intron | 40.0% | |
| GGATTAACTAATACTCCCTC+CGG | + | chr8_1:84945894-84945913 | None:intergenic | 40.0% | |
| !! | GGAGGGAGTATTAGTTAATC+CGG | - | chr8_1:84945893-84945912 | Msa1221390:intron | 40.0% |
| !! | TCGTGAATTGACTTGGTTTG+AGG | - | chr8_1:84946003-84946022 | Msa1221390:intron | 40.0% |
| !! | CGTGAATTGACTTGGTTTGA+GGG | - | chr8_1:84946004-84946023 | Msa1221390:intron | 40.0% |
| !!! | GTTTGAGGGTGTAGTTTTGA+CGG | - | chr8_1:84946018-84946037 | Msa1221390:intron | 40.0% |
| ! | GGGAAGTATAAGAGACCAAA+AGG | + | chr8_1:84946433-84946452 | None:intergenic | 40.0% |
| TACTATCTATTGTCAGACGC+TGG | - | chr8_1:84946559-84946578 | Msa1221390:intron | 40.0% | |
| ! | GTTGCAGAAGATCTCTTTTG+TGG | - | chr8_1:84946587-84946606 | Msa1221390:intron | 40.0% |
| ! | CTCTTTTGTGGCACATTCTT+TGG | - | chr8_1:84946599-84946618 | Msa1221390:intron | 40.0% |
| TTTGCAGTCACAATTTCTGC+AGG | + | chr8_1:84946694-84946713 | None:intergenic | 40.0% | |
| CAGAAATTGTGACTGCAAAG+AGG | - | chr8_1:84946695-84946714 | Msa1221390:intron | 40.0% | |
| TGTATCACGTTTCAGCATCA+TGG | - | chr8_1:84946865-84946884 | Msa1221390:intron | 40.0% | |
| !!! | CACCTACCTTTATTTTTGCC+TGG | - | chr8_1:84946898-84946917 | Msa1221390:intron | 40.0% |
| TGCCAGGCAAAAATAAAGGT+AGG | + | chr8_1:84946903-84946922 | None:intergenic | 40.0% | |
| CAGATGCCAGGCAAAAATAA+AGG | + | chr8_1:84946907-84946926 | None:intergenic | 40.0% | |
| ! | AAAAGCACAGATGACTGTGA+TGG | + | chr8_1:84946969-84946988 | None:intergenic | 40.0% |
| !! | AAGTTACAGACCGGTTTTCA+TGG | - | chr8_1:84947247-84947266 | Msa1221390:intron | 40.0% |
| TCCCAATAGCTTGACTATGA+TGG | + | chr8_1:84947785-84947804 | None:intergenic | 40.0% | |
| CATAGTCAAGCTATTGGGAT+AGG | - | chr8_1:84947786-84947805 | Msa1221390:intron | 40.0% | |
| ACTTAAGTGTGTGTGCATAC+TGG | - | chr8_1:84947853-84947872 | Msa1221390:intron | 40.0% | |
| GAAATGGAAGCTACAAGAAC+CGG | + | chr8_1:84947911-84947930 | None:intergenic | 40.0% | |
| GATGCTCTTCTTTCAAGGAA+AGG | + | chr8_1:84947945-84947964 | None:intergenic | 40.0% | |
| GTGTTGAAGATATGGTTGGA+TGG | - | chr8_1:84948570-84948589 | Msa1221390:intron | 40.0% | |
| CTTCAGTGTGTACAATGTGT+GGG | + | chr8_1:84948746-84948765 | None:intergenic | 40.0% | |
| ACATTGTACACACTGAAGGT+GGG | - | chr8_1:84948748-84948767 | Msa1221390:CDS | 40.0% | |
| AATTTCCATTGAACCTTGGG+TGG | - | chr8_1:84949308-84949327 | Msa1221390:intron | 40.0% | |
| ATGTTCTTCTTGTAGGAGCT+AGG | - | chr8_1:84949341-84949360 | Msa1221390:intron | 40.0% | |
| AAACTTCCAAAGAAAGGCAG+AGG | + | chr8_1:84949524-84949543 | None:intergenic | 40.0% | |
| ! | TGATGAACTGATTCTTGCCA+TGG | - | chr8_1:84949596-84949615 | Msa1221390:intron | 40.0% |
| GCTTTCAGAAGAGTAAACAG+CGG | - | chr8_1:84950056-84950075 | Msa1221390:intron | 40.0% | |
| GGAACATCTAGCTGAAATTG+TGG | + | chr8_1:84950242-84950261 | None:intergenic | 40.0% | |
| AATCTCAGGTGAAAACCTAC+TGG | - | chr8_1:84950286-84950305 | Msa1221390:CDS | 40.0% | |
| ! | GAAAACCTACTGGTTGCATT+CGG | - | chr8_1:84950296-84950315 | Msa1221390:CDS | 40.0% |
| ! | GGGTTAATTGTTTCTTGCAC+TGG | - | chr8_1:84950534-84950553 | Msa1221390:five_prime_UTR | 40.0% |
| GCAATTACAAGGACTTCTGA+AGG | + | chr8_1:84950602-84950621 | None:intergenic | 40.0% | |
| ! | TTTCATCGTCGACGATTTGG+TGG | - | chr8_1:84945174-84945193 | Msa1221390:three_prime_UTR | 45.0% |
| ATGACAAGGTGAGGAGGAAT+GGG | + | chr8_1:84945258-84945277 | None:intergenic | 45.0% | |
| TGGTTAATGGCATTGTTGGC+AGG | - | chr8_1:84945280-84945299 | Msa1221390:intron | 45.0% | |
| ! | TGCTGATTGGAGATATGGTG+CGG | - | chr8_1:84945407-84945426 | Msa1221390:intron | 45.0% |
| !! | GCTCTCTTCTAGCTTAACCA+AGG | - | chr8_1:84945520-84945539 | Msa1221390:CDS | 45.0% |
| ! | TCTAGCTTAACCAAGGTCAC+TGG | - | chr8_1:84945527-84945546 | Msa1221390:CDS | 45.0% |
| TGAACTTGAACCAGTGACCT+TGG | + | chr8_1:84945540-84945559 | None:intergenic | 45.0% | |
| ! | GTGTTGATACTATGGGTGAG+AGG | - | chr8_1:84946371-84946390 | Msa1221390:intron | 45.0% |
| !!! | GGCTAGCTGAAGAGGTATTT+TGG | - | chr8_1:84946392-84946411 | Msa1221390:intron | 45.0% |
| AAAGAGATCTTCTGCAACCC+AGG | + | chr8_1:84946585-84946604 | None:intergenic | 45.0% | |
| TTTGTGGCACATTCTTTGGG+AGG | - | chr8_1:84946603-84946622 | Msa1221390:intron | 45.0% | |
| CATTATGAAGCCAGAATCGC+TGG | - | chr8_1:84946750-84946769 | Msa1221390:CDS | 45.0% | |
| TGTCCTCTTGAACCAAGATG+CGG | + | chr8_1:84946810-84946829 | None:intergenic | 45.0% | |
| TGGTTCAAGAGGACATAGAC+AGG | - | chr8_1:84946815-84946834 | Msa1221390:CDS | 45.0% | |
| ATGTTCCGTGCCATGAAAAC+CGG | + | chr8_1:84947260-84947279 | None:intergenic | 45.0% | |
| GGATGGCCTATGAAGATATC+TGG | + | chr8_1:84947508-84947527 | None:intergenic | 45.0% | |
| TCAAATGTCCATACCTGCAC+AGG | + | chr8_1:84947529-84947548 | None:intergenic | 45.0% | |
| TCAATCATTCGGAGGAGAAG+AGG | + | chr8_1:84948041-84948060 | None:intergenic | 45.0% | |
| TCTTCTCCTCCGAATGATTG+AGG | - | chr8_1:84948040-84948059 | Msa1221390:intron | 45.0% | |
| CAGAATCCTCAATCATTCGG+AGG | + | chr8_1:84948049-84948068 | None:intergenic | 45.0% | |
| !! | GCATGTGCTGACTTTGACAT+GGG | + | chr8_1:84948321-84948340 | None:intergenic | 45.0% |
| !! | TGCATGTGCTGACTTTGACA+TGG | + | chr8_1:84948322-84948341 | None:intergenic | 45.0% |
| ATAATTAGCTCGTGTGGCAG+AGG | + | chr8_1:84948464-84948483 | None:intergenic | 45.0% | |
| ! | GATGGAGCACCTCATCAATT+CGG | - | chr8_1:84948588-84948607 | Msa1221390:intron | 45.0% |
| ATGTTGACGCCGAATTGATG+AGG | + | chr8_1:84948600-84948619 | None:intergenic | 45.0% | |
| GCGTCAACATGAACTTCCAA+AGG | - | chr8_1:84948610-84948629 | Msa1221390:intron | 45.0% | |
| CCTTCAGTGTGTACAATGTG+TGG | + | chr8_1:84948747-84948766 | None:intergenic | 45.0% | |
| CCACACATTGTACACACTGA+AGG | - | chr8_1:84948744-84948763 | Msa1221390:CDS | 45.0% | |
| CACATTGTACACACTGAAGG+TGG | - | chr8_1:84948747-84948766 | Msa1221390:CDS | 45.0% | |
| TGGAGGCCAGAAAATTGACA+TGG | - | chr8_1:84948809-84948828 | Msa1221390:CDS | 45.0% | |
| GGCCAGAAAATTGACATGGA+AGG | - | chr8_1:84948813-84948832 | Msa1221390:CDS | 45.0% | |
| CATACTATACCAACCACCCA+AGG | + | chr8_1:84949324-84949343 | None:intergenic | 45.0% | |
| AACCTACCTCTGCCTTTCTT+TGG | - | chr8_1:84949515-84949534 | Msa1221390:intron | 45.0% | |
| TTCCAAAGAAAGGCAGAGGT+AGG | + | chr8_1:84949520-84949539 | None:intergenic | 45.0% | |
| !! | ACTTGGATTAGTCGGTCCTT+GGG | - | chr8_1:84949735-84949754 | Msa1221390:intron | 45.0% |
| AAACTCGGTATCATGACCCA+AGG | + | chr8_1:84949754-84949773 | None:intergenic | 45.0% | |
| TACTGCTCACAGTACAATCC+AGG | - | chr8_1:84950081-84950100 | Msa1221390:intron | 45.0% | |
| ! | AATGCCCTTTCATCTAGAGC+TGG | + | chr8_1:84950172-84950191 | None:intergenic | 45.0% |
| ACATTGCCGGAGACTAGATA+AGG | + | chr8_1:84950359-84950378 | None:intergenic | 45.0% | |
| GATGACAAGGTGAGGAGGAA+TGG | + | chr8_1:84945259-84945278 | None:intergenic | 50.0% | |
| TCCTCCTCACCTTGTCATCA+TGG | - | chr8_1:84945260-84945279 | Msa1221390:intron | 50.0% | |
| ACCATGATGACAAGGTGAGG+AGG | + | chr8_1:84945264-84945283 | None:intergenic | 50.0% | |
| CGGTGGACGATGACTTTATC+TGG | + | chr8_1:84945453-84945472 | None:intergenic | 50.0% | |
| ! | ACATTCTTTGGGAGGCTTGG+TGG | - | chr8_1:84946611-84946630 | Msa1221390:intron | 50.0% |
| !! | TGGCTCTAAACCAGCGATTC+TGG | + | chr8_1:84946763-84946782 | None:intergenic | 50.0% |
| !! | ACAGACCGGTTTTCATGGCA+CGG | - | chr8_1:84947252-84947271 | Msa1221390:intron | 50.0% |
| ATGTCCATACCTGCACAGGA+TGG | + | chr8_1:84947525-84947544 | None:intergenic | 50.0% | |
| TTCCTCACGGACAACGATGA+TGG | - | chr8_1:84948008-84948027 | Msa1221390:intron | 50.0% | |
| TTCCATCATCGTTGTCCGTG+AGG | + | chr8_1:84948013-84948032 | None:intergenic | 50.0% | |
| ATCATTCGGAGGAGAAGAGG+AGG | + | chr8_1:84948038-84948057 | None:intergenic | 50.0% | |
| GAGTTTATTGACAGCCCTGC+AGG | - | chr8_1:84948430-84948449 | Msa1221390:intron | 50.0% | |
| TCCATTGAACCTTGGGTGGT+TGG | - | chr8_1:84949312-84949331 | Msa1221390:intron | 50.0% | |
| ACCAACCACCCAAGGTTCAA+TGG | + | chr8_1:84949316-84949335 | None:intergenic | 50.0% | |
| CAAGGACCGACTAATCCAAG+TGG | + | chr8_1:84949736-84949755 | None:intergenic | 50.0% | |
| !! | CACTTGGATTAGTCGGTCCT+TGG | - | chr8_1:84949734-84949753 | Msa1221390:intron | 50.0% |
| GATGATAAGGGGTCTCACTC+AGG | - | chr8_1:84950009-84950028 | Msa1221390:intron | 50.0% | |
| GGGTCTCACTCAGGTTCATT+GGG | - | chr8_1:84950018-84950037 | Msa1221390:intron | 50.0% | |
| ! | ACCTACTGGTTGCATTCGGA+TGG | - | chr8_1:84950300-84950319 | Msa1221390:CDS | 50.0% |
| ACCATCCGAATGCAACCAGT+AGG | + | chr8_1:84950304-84950323 | None:intergenic | 50.0% | |
| GTGCGGAGCAGTTTCTCAAG+AGG | - | chr8_1:84945424-84945443 | Msa1221390:intron | 55.0% | |
| ACCCAAGCTTGGACAGACAG+CGG | - | chr8_1:84945561-84945580 | Msa1221390:intron | 55.0% | |
| GTCTACGCAGTTGTGTGCGA+AGG | - | chr8_1:84945644-84945663 | Msa1221390:intron | 55.0% | |
| TCTATTGTCAGACGCTGGCC+TGG | - | chr8_1:84946564-84946583 | Msa1221390:intron | 55.0% | |
| ! | CTATTGTCAGACGCTGGCCT+GGG | - | chr8_1:84946565-84946584 | Msa1221390:intron | 55.0% |
| ! | GGCACATTCTTTGGGAGGCT+TGG | - | chr8_1:84946608-84946627 | Msa1221390:intron | 55.0% |
| TCTTGAACCAAGATGCGGCG+TGG | + | chr8_1:84946805-84946824 | None:intergenic | 55.0% | |
| ACGCCGCATCTTGGTTCAAG+AGG | - | chr8_1:84946804-84946823 | Msa1221390:CDS | 55.0% | |
| CTTCATAGGCCATCCTGTGC+AGG | - | chr8_1:84947513-84947532 | Msa1221390:CDS | 55.0% | |
| TAGGCCATCCTGTGCAGGTA+TGG | - | chr8_1:84947518-84947537 | Msa1221390:CDS | 55.0% | |
| GGGGTCTCACTCAGGTTCAT+TGG | - | chr8_1:84950017-84950036 | Msa1221390:intron | 55.0% | |
| ! | TCAGGTTCATTGGGAGCGTG+TGG | - | chr8_1:84950027-84950046 | Msa1221390:intron | 55.0% |
| GCCGCTGTCTGTCCAAGCTT+GGG | + | chr8_1:84945565-84945584 | None:intergenic | 60.0% | |
| AGCCGCTGTCTGTCCAAGCT+TGG | + | chr8_1:84945566-84945585 | None:intergenic | 60.0% | |
| ! | GGGTGAGAGGCTAGCTGAAG+AGG | - | chr8_1:84946384-84946403 | Msa1221390:intron | 60.0% |
| ACCTTTGCCACGCCGCATCT+TGG | - | chr8_1:84946795-84946814 | Msa1221390:CDS | 60.0% | |
| ACCAAGATGCGGCGTGGCAA+AGG | + | chr8_1:84946799-84946818 | None:intergenic | 60.0% | |
| ! | CTCGTGTGGCAGAGGAGCAT+GGG | + | chr8_1:84948456-84948475 | None:intergenic | 60.0% |
| ! | CAGAGGAGCATGGGCCTGCA+GGG | + | chr8_1:84948447-84948466 | None:intergenic | 65.0% |
| GCTCGTGTGGCAGAGGAGCA+TGG | + | chr8_1:84948457-84948476 | None:intergenic | 65.0% | |
| ! | GCAGAGGAGCATGGGCCTGC+AGG | + | chr8_1:84948448-84948467 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 84944939 | 84950622 | 84944939 | ID=Msa1221390;Name=Msa1221390 |
| chr8_1 | mRNA | 84944939 | 84950622 | 84944939 | ID=Msa1221390-mRNA-1;Parent=Msa1221390;Name=Msa1221390-mRNA-1;_AED=0.30;_eAED=0.30;_QI=100|1|1|1|1|1|10|257|414 |
| chr8_1 | exon | 84944939 | 84945267 | 84944939 | ID=Msa1221390-mRNA-1:exon:30548;Parent=Msa1221390-mRNA-1 |
| chr8_1 | exon | 84945459 | 84945556 | 84945459 | ID=Msa1221390-mRNA-1:exon:30547;Parent=Msa1221390-mRNA-1 |
| chr8_1 | exon | 84946727 | 84946847 | 84946727 | ID=Msa1221390-mRNA-1:exon:30546;Parent=Msa1221390-mRNA-1 |
| chr8_1 | exon | 84946930 | 84946982 | 84946930 | ID=Msa1221390-mRNA-1:exon:30545;Parent=Msa1221390-mRNA-1 |
| chr8_1 | exon | 84947333 | 84947388 | 84947333 | ID=Msa1221390-mRNA-1:exon:30544;Parent=Msa1221390-mRNA-1 |
| chr8_1 | exon | 84947477 | 84947640 | 84947477 | ID=Msa1221390-mRNA-1:exon:30543;Parent=Msa1221390-mRNA-1 |
| chr8_1 | exon | 84948725 | 84949003 | 84948725 | ID=Msa1221390-mRNA-1:exon:30542;Parent=Msa1221390-mRNA-1 |
| chr8_1 | exon | 84949156 | 84949226 | 84949156 | ID=Msa1221390-mRNA-1:exon:30541;Parent=Msa1221390-mRNA-1 |
| chr8_1 | exon | 84950090 | 84950157 | 84950090 | ID=Msa1221390-mRNA-1:exon:30540;Parent=Msa1221390-mRNA-1 |
| chr8_1 | exon | 84950260 | 84950622 | 84950260 | ID=Msa1221390-mRNA-1:exon:30539;Parent=Msa1221390-mRNA-1 |
| chr8_1 | five_prime_UTR | 84950523 | 84950622 | 84950523 | ID=Msa1221390-mRNA-1:five_prime_utr;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84950260 | 84950522 | 84950260 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84950090 | 84950157 | 84950090 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84949156 | 84949226 | 84949156 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84948725 | 84949003 | 84948725 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84947477 | 84947640 | 84947477 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84947333 | 84947388 | 84947333 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84946930 | 84946982 | 84946930 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84946727 | 84946847 | 84946727 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84945459 | 84945556 | 84945459 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | CDS | 84945196 | 84945267 | 84945196 | ID=Msa1221390-mRNA-1:cds;Parent=Msa1221390-mRNA-1 |
| chr8_1 | three_prime_UTR | 84944939 | 84945195 | 84944939 | ID=Msa1221390-mRNA-1:three_prime_utr;Parent=Msa1221390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
