AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222150 MtrunA17_Chr4g0073361 99.543 219 1 0 1 219 1 219 6.56e-164 451
Msa1222150 MtrunA17_Chr4g0073371 85.572 201 29 0 19 219 20 220 1.35e-128 362
Msa1222150 MtrunA17_Chr2g0305421 74.444 180 44 1 40 219 69 246 1.44e-101 294
Msa1222150 MtrunA17_Chr0c01g0489471 67.033 182 58 1 35 216 48 227 1.41e-87 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222150 AT2G23820.2 66.038 212 65 3 7 216 47 253 8.41e-97 283
Msa1222150 AT1G26160.1 66.854 178 57 1 39 216 74 249 2.19e-87 259
Msa1222150 AT2G23820.1 63.776 196 64 3 7 200 47 237 1.55e-84 251
Msa1222150 AT1G26160.2 63.433 134 47 1 39 172 74 205 3.09e-59 186

Find 102 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCAACTCTGGAGTTTA+TGG 0.112842 8_1:+86369678 Msa1222150:three_prime_UTR
TTCATGCACACCTACTATTT+TGG 0.197879 8_1:-86369850 None:intergenic
TAGCATGTAGTGTTGTAAAT+TGG 0.252390 8_1:+86369773 Msa1222150:three_prime_UTR
TCAGAATGACAAGGGGATTT+AGG 0.260938 8_1:-86369658 None:intergenic
TCCTTGACAAATTTCGCTTC+TGG 0.294446 8_1:-86366942 None:intergenic
CTTTGTTTAATAGCTTTGAT+TGG 0.334175 8_1:+86366674 Msa1222150:intron
GAGTATATGTGCAAAATAAT+TGG 0.343221 8_1:+86366761 Msa1222150:CDS
TTTGTTTAATAGCTTTGATT+GGG 0.344798 8_1:+86366675 Msa1222150:intron
TGCAGAGCAAGGGAAGGATT+TGG 0.349198 8_1:+86368524 Msa1222150:intron
TATTCATTTGACCTCATTCA+TGG 0.354910 8_1:+86369912 Msa1222150:three_prime_UTR
TTAAAACTCTGTATCTCAAT+TGG 0.364479 8_1:+86369744 Msa1222150:three_prime_UTR
CATGTATCGTATGAGTTTGA+TGG 0.373720 8_1:+86365887 Msa1222150:CDS
AAGCTTTGCCAACTTCAGTT+TGG 0.374352 8_1:-86369602 None:intergenic
ATGTGATCAGCTACAGATTC+TGG 0.384061 8_1:-86365867 None:intergenic
CGATCTAGACCGGGAACATC+TGG 0.393742 8_1:-86365921 None:intergenic
AGTGGCCATGAGAAAATTTC+TGG 0.407851 8_1:-86365290 None:intergenic
TTCCATTAAAAGTTCCCCTT+TGG 0.408328 8_1:+86370073 Msa1222150:three_prime_UTR
TCGAAACGATTATTGTAAGT+TGG 0.408959 8_1:+86365192 Msa1222150:five_prime_UTR
CATTAAAAGTTCCCCTTTGG+TGG 0.413333 8_1:+86370076 Msa1222150:three_prime_UTR
ATGGGTGAGAAGAGATGTTA+AGG 0.418352 8_1:+86365842 Msa1222150:CDS
AAACTGAAGTTGGCAAAGCT+TGG 0.426274 8_1:+86369604 Msa1222150:CDS
AACTGAAGTTGGCAAAGCTT+GGG 0.431371 8_1:+86369605 Msa1222150:CDS
CACTCCTCCGCCATCTTCTT+CGG 0.434262 8_1:+86365366 Msa1222150:CDS
CTGATTGCACCAGATGTTCC+CGG 0.439005 8_1:+86365912 Msa1222150:CDS
AACGGAGAAGGGGAAGCATC+TGG 0.439972 8_1:-86365394 None:intergenic
TAACTTGTTTCGATCTAGAC+CGG 0.472474 8_1:-86365931 None:intergenic
TTCATGAGTTCCATGTGGGT+TGG 0.476914 8_1:+86369941 Msa1222150:three_prime_UTR
GGAGATCTCTTAACACTGTA+AGG 0.480112 8_1:+86369810 Msa1222150:three_prime_UTR
AGCATGTAGTGTTGTAAATT+GGG 0.486556 8_1:+86369774 Msa1222150:three_prime_UTR
TCGATGGCGGCAAACGGAGA+AGG 0.488140 8_1:-86365406 None:intergenic
TTGTCATTCTGATTCAACTC+TGG 0.489141 8_1:+86369669 Msa1222150:three_prime_UTR
CTTTCCACTTCCATCTTGAG+AGG 0.490813 8_1:-86369706 None:intergenic
GTACAGATCACCAAAATAGT+AGG 0.499428 8_1:+86369840 Msa1222150:three_prime_UTR
TCGCCGTCAACGGCTGTCAC+CGG 0.505620 8_1:+86365331 Msa1222150:CDS
TACTTTCATGAGTTCCATGT+GGG 0.505884 8_1:+86369937 Msa1222150:three_prime_UTR
TCGCCGGTGACAGCCGTTGA+CGG 0.508212 8_1:-86365334 None:intergenic
GGGAAGTTCCAAACTGAAGT+TGG 0.509544 8_1:+86369594 Msa1222150:intron
ATTCATTTGACCTCATTCAT+GGG 0.511056 8_1:+86369913 Msa1222150:three_prime_UTR
TCTGGAACCGCCGAAGAAGA+TGG 0.513692 8_1:-86365376 None:intergenic
AGGAACTCGATGGCGGCAAA+CGG 0.518252 8_1:-86365412 None:intergenic
AGAAATGATACTTCAAGCGC+TGG 0.518813 8_1:+86367419 Msa1222150:CDS
AGGAGTGGTGTTTGTGTCGC+CGG 0.521452 8_1:-86365350 None:intergenic
CAAGCGCTGGATTATGAAGA+TGG 0.525283 8_1:+86367432 Msa1222150:CDS
CGATGGCGGCAAACGGAGAA+GGG 0.527059 8_1:-86365405 None:intergenic
TCTCCCTCTCAAGATGGAAG+TGG 0.527616 8_1:+86369702 Msa1222150:three_prime_UTR
TCTCAAGATGGAAGTGGAAA+GGG 0.527642 8_1:+86369708 Msa1222150:three_prime_UTR
TTGAACATGGCTCCACCAAA+GGG 0.528449 8_1:-86370088 None:intergenic
CTCTCAAGATGGAAGTGGAA+AGG 0.538234 8_1:+86369707 Msa1222150:three_prime_UTR
GTTGAACATGGCTCCACCAA+AGG 0.538597 8_1:-86370089 None:intergenic
GAAAGGAAATTACTGAGTTG+TGG 0.542127 8_1:+86366895 Msa1222150:CDS
GAAAACAAAGAGAGCAGGAT+GGG 0.546416 8_1:+86365824 Msa1222150:intron
CATGGCTTTGTGCAGAGCAA+GGG 0.552135 8_1:+86368514 Msa1222150:intron
GGAAATTACTGAGTTGTGGA+TGG 0.552309 8_1:+86366899 Msa1222150:CDS
AAATAGAAAACAAAGAGAGC+AGG 0.561932 8_1:+86365819 Msa1222150:intron
TTTCCACTTCCATCTTGAGA+GGG 0.562257 8_1:-86369705 None:intergenic
AAAATAATTGGAGTAGGAGA+AGG 0.564730 8_1:+86366773 Msa1222150:CDS
ATGTGCAAAATAATTGGAGT+AGG 0.567978 8_1:+86366767 Msa1222150:CDS
TTGTTTAATAGCTTTGATTG+GGG 0.568878 8_1:+86366676 Msa1222150:intron
AGCATCATCATCGCCGTCAA+CGG 0.572033 8_1:+86365321 Msa1222150:CDS
CGAAGAAGATGGCGGAGGAG+TGG 0.574074 8_1:-86365365 None:intergenic
AGAAAATTTCTGGTGAAAGT+CGG 0.575948 8_1:-86365280 None:intergenic
TATGGATCTCCCTCTCAAGA+TGG 0.576940 8_1:+86369696 Msa1222150:three_prime_UTR
AAGTCGGTGTGTGGGAGAGA+TGG 0.582350 8_1:-86365264 None:intergenic
AAGGTTCTCGTGGTTGAACA+TGG 0.586993 8_1:-86370101 None:intergenic
TCCTCCGCCATCTTCTTCGG+CGG 0.587721 8_1:+86365369 Msa1222150:CDS
AAATTGGGAATCCGTGGTGA+CGG 0.588814 8_1:+86369789 Msa1222150:three_prime_UTR
ATGAAAGTACCCCATGAATG+AGG 0.595670 8_1:-86369923 None:intergenic
ATTGTTCATGACATTGCAGA+AGG 0.599587 8_1:+86366054 Msa1222150:CDS
TCCAGAAGCGAAATTTGTCA+AGG 0.599615 8_1:+86366941 Msa1222150:CDS
TTCATTTGACCTCATTCATG+GGG 0.599939 8_1:+86369914 Msa1222150:three_prime_UTR
CATCAGAGATTGTATCGAGA+AGG 0.603166 8_1:+86369628 Msa1222150:CDS
ACCGCCGAAGAAGATGGCGG+AGG 0.603237 8_1:-86365370 None:intergenic
CACTGTCTGTCACCACCTCA+AGG 0.607523 8_1:+86365435 Msa1222150:CDS
AAAAGCCACAAACCTTGTCA+AGG 0.608622 8_1:-86366965 None:intergenic
TTCTGGTGAAAGTCGGTGTG+TGG 0.609449 8_1:-86365273 None:intergenic
TAAAGGCACAACAAAAGCAA+TGG 0.611125 8_1:-86369994 None:intergenic
AACTTGTTTCGATCTAGACC+GGG 0.615123 8_1:-86365930 None:intergenic
GCTTTGTGCAGAGCAAGGGA+AGG 0.616962 8_1:+86368518 Msa1222150:intron
GATGGCGGCAAACGGAGAAG+GGG 0.620600 8_1:-86365404 None:intergenic
GAGTTGAATCAGAATGACAA+GGG 0.622687 8_1:-86369666 None:intergenic
ATGGAAGTGGAAAGGGCGAG+AGG 0.624902 8_1:+86369715 Msa1222150:three_prime_UTR
TTCTGCAATGTCATGAACAA+TGG 0.625875 8_1:-86366052 None:intergenic
ATTTGTCAAGGACCTTGACA+AGG 0.627652 8_1:+86366953 Msa1222150:CDS
GTACTTTCATGAGTTCCATG+TGG 0.628802 8_1:+86369936 Msa1222150:three_prime_UTR
GTAAGTAAAACCAACCCACA+TGG 0.629154 8_1:-86369951 None:intergenic
TGGAAGTGGAAAGGGCGAGA+GGG 0.629289 8_1:+86369716 Msa1222150:three_prime_UTR
AGAAAACAAAGAGAGCAGGA+TGG 0.631422 8_1:+86365823 Msa1222150:intron
GGAGTAGGAGAAGGATCGAG+AGG 0.645575 8_1:+86366782 Msa1222150:CDS
AGAGTTGAATCAGAATGACA+AGG 0.654332 8_1:-86369667 None:intergenic
TCTGGTGAAAGTCGGTGTGT+GGG 0.665635 8_1:-86365272 None:intergenic
GACAGTGAGGAACTCGATGG+CGG 0.666945 8_1:-86365419 None:intergenic
TGTTGTAAATTGGGAATCCG+TGG 0.672452 8_1:+86369783 Msa1222150:three_prime_UTR
AATGCAGACGTACCTTGAGG+TGG 0.674460 8_1:-86365447 None:intergenic
TGATGATGCTGAAGGTGCAG+TGG 0.680499 8_1:-86365308 None:intergenic
TGAAATGAGAATATCACACT+CGG 0.688311 8_1:-86365238 None:intergenic
TTAAGAGATCTCCGTCACCA+CGG 0.699596 8_1:-86369800 None:intergenic
TGAGGTGGTGACAGACAGTG+AGG 0.702841 8_1:-86365432 None:intergenic
AGTTGAATCAGAATGACAAG+GGG 0.706767 8_1:-86369665 None:intergenic
TGAACATGGCTCCACCAAAG+GGG 0.707225 8_1:-86370087 None:intergenic
ACAGACAGTGAGGAACTCGA+TGG 0.711999 8_1:-86365422 None:intergenic
GACGGCGATGATGATGCTGA+AGG 0.717197 8_1:-86365316 None:intergenic
GGAACCGCCGAAGAAGATGG+CGG 0.718597 8_1:-86365373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAATATAGTTTTAATTAAT+CGG + chr8_1:86365625-86365644 Msa1222150:intron 10.0%
!!! TTTTTCATTTATAATTGTAA+CGG + chr8_1:86368383-86368402 Msa1222150:intron 10.0%
!! CATAGAAATAAATTTATAAA+CGG - chr8_1:86368448-86368467 None:intergenic 10.0%
!!! TTTTTAACAAAAACAGAATA+GGG - chr8_1:86366531-86366550 None:intergenic 15.0%
!!! TTTTTTAACAAAAACAGAAT+AGG - chr8_1:86366532-86366551 None:intergenic 15.0%
!! TGGAACAAAAATTATTATTA+TGG - chr8_1:86367392-86367411 None:intergenic 15.0%
!!! ACTGTTATTTTTTTAATCAA+TGG + chr8_1:86368743-86368762 Msa1222150:intron 15.0%
!! TAAAAAAAAACTCATCAAAA+TGG - chr8_1:86368928-86368947 None:intergenic 15.0%
!!! TTACAACTATTTTAATTGTT+AGG - chr8_1:86369526-86369545 None:intergenic 15.0%
!!! TAATAAGGAGTAAATTTTGA+AGG - chr8_1:86365478-86365497 None:intergenic 20.0%
!! GTTATCAGTTAAAAGAAAAA+AGG - chr8_1:86365966-86365985 None:intergenic 20.0%
!!! TTGTTAAAAAAGCAATTTTC+AGG + chr8_1:86366541-86366560 Msa1222150:intron 20.0%
!!! TAAATTGATTTTGCTTACTT+TGG + chr8_1:86366649-86366668 Msa1222150:intron 20.0%
!!! TTTGTTTAATAGCTTTGATT+GGG + chr8_1:86366675-86366694 Msa1222150:intron 20.0%
!! CTGTTTATTAAAAAGATCAA+TGG + chr8_1:86367097-86367116 Msa1222150:intron 20.0%
!!! TCTTATTTTATAAGTTTAGG+AGG - chr8_1:86367175-86367194 None:intergenic 20.0%
!!! CTCTCTTATTTTATAAGTTT+AGG - chr8_1:86367178-86367197 None:intergenic 20.0%
!!! ATAATGATAATGCTACATTT+TGG + chr8_1:86367311-86367330 Msa1222150:intron 20.0%
!!! TAATAATTTTTGTTCCATAC+AGG + chr8_1:86367395-86367414 Msa1222150:intron 20.0%
!! TATGCAAATAATATTGAACT+TGG + chr8_1:86367605-86367624 Msa1222150:intron 20.0%
!! GAATCATATTACAATAGTAA+TGG + chr8_1:86367719-86367738 Msa1222150:intron 20.0%
!!! ATGTTTTAGAACTGTTTTAT+AGG + chr8_1:86367790-86367809 Msa1222150:intron 20.0%
!!! CATTTTTAAATGTTCTACTT+AGG - chr8_1:86367886-86367905 None:intergenic 20.0%
!! TCACAAAAGTTGTTTAAAAA+TGG - chr8_1:86367989-86368008 None:intergenic 20.0%
!!! CACTAAAAGTTGTTTAAAAT+TGG + chr8_1:86368103-86368122 Msa1222150:intron 20.0%
!! AACAAGTTCAATCAAATAAA+GGG - chr8_1:86368234-86368253 None:intergenic 20.0%
!! AATGAAAAAGAACTCATATT+TGG - chr8_1:86368372-86368391 None:intergenic 20.0%
!! AATAAATTTATAAACGGAGA+TGG - chr8_1:86368442-86368461 None:intergenic 20.0%
!!! AAAGTTTGAGAGTATAAAAA+CGG - chr8_1:86369293-86369312 None:intergenic 20.0%
!! AAAAATCATAAACCTGATTA+TGG + chr8_1:86369432-86369451 Msa1222150:intron 20.0%
!! TAGTTGTAAAATTTGATCAA+TGG + chr8_1:86369537-86369556 Msa1222150:intron 20.0%
! TCAAAGTAGAACAATTCATT+AGG - chr8_1:86365721-86365740 None:intergenic 25.0%
! GTTAAAAGAAAAAAGGAAAG+TGG - chr8_1:86365959-86365978 None:intergenic 25.0%
!!! TGGTTTGTTTGTTAATTTTC+AGG + chr8_1:86366016-86366035 Msa1222150:intron 25.0%
!!! AATTTTCAGGTGCATAAAAA+TGG + chr8_1:86366029-86366048 Msa1222150:intron 25.0%
! GTAAATATTTGTCTAAGCTT+CGG + chr8_1:86366252-86366271 Msa1222150:intron 25.0%
! TACTCCTATCATTATAATAC+TGG + chr8_1:86366484-86366503 Msa1222150:intron 25.0%
! ACTCCTATCATTATAATACT+GGG + chr8_1:86366485-86366504 Msa1222150:intron 25.0%
! ATCAATTTATAGTTCCAAGT+AGG - chr8_1:86366638-86366657 None:intergenic 25.0%
!!! CTTTGTTTAATAGCTTTGAT+TGG + chr8_1:86366674-86366693 Msa1222150:intron 25.0%
!!! TTGTTTAATAGCTTTGATTG+GGG + chr8_1:86366676-86366695 Msa1222150:intron 25.0%
! GAGTATATGTGCAAAATAAT+TGG + chr8_1:86366761-86366780 Msa1222150:CDS 25.0%
!! TAATTGAATTTTCACACTGA+AGG + chr8_1:86366873-86366892 Msa1222150:intron 25.0%
!! TTTTATAAGTTTAGGAGGAA+AGG - chr8_1:86367170-86367189 None:intergenic 25.0%
! ACAATTCAAATGGTTTGATA+AGG - chr8_1:86367521-86367540 None:intergenic 25.0%
! AGATTGACAAACAATTCAAA+TGG - chr8_1:86367531-86367550 None:intergenic 25.0%
!!! TTTACCTGTTTGTTATCTAT+AGG + chr8_1:86367682-86367701 Msa1222150:intron 25.0%
! GTAATATGATTCATCACTAA+CGG - chr8_1:86367711-86367730 None:intergenic 25.0%
! AAATTCTCAATAATGTGAAG+AGG - chr8_1:86368145-86368164 None:intergenic 25.0%
! GAACAAGTTCAATCAAATAA+AGG - chr8_1:86368235-86368254 None:intergenic 25.0%
! ATTTCTATGCGATGTTTATT+TGG + chr8_1:86368459-86368478 Msa1222150:intron 25.0%
!!! TTCTGAAATTTGTTTTCTCA+TGG + chr8_1:86368496-86368515 Msa1222150:intron 25.0%
! TTCAGTAGTGTTATAAACAA+AGG - chr8_1:86368804-86368823 None:intergenic 25.0%
!!! CTTATTTATTTCTTTTACCC+TGG - chr8_1:86369184-86369203 None:intergenic 25.0%
! TGTTTATACCCCTAAAATTA+TGG - chr8_1:86369249-86369268 None:intergenic 25.0%
! ATACTCTCAAACTTTAGTAA+TGG + chr8_1:86369298-86369317 Msa1222150:intron 25.0%
!!! TTGAGATACAGAGTTTTAAA+AGG - chr8_1:86369743-86369762 None:intergenic 25.0%
! TTAAAACTCTGTATCTCAAT+TGG + chr8_1:86369744-86369763 Msa1222150:three_prime_UTR 25.0%
TCGAAACGATTATTGTAAGT+TGG + chr8_1:86365192-86365211 Msa1222150:five_prime_UTR 30.0%
TGAAATGAGAATATCACACT+CGG - chr8_1:86365241-86365260 None:intergenic 30.0%
!! AGAAAATTTCTGGTGAAAGT+CGG - chr8_1:86365283-86365302 None:intergenic 30.0%
! TTTCACCAGAAATTTTCTCA+TGG + chr8_1:86365285-86365304 Msa1222150:exon 30.0%
TCCTTATTATCTCATAAAGC+TGG + chr8_1:86365489-86365508 Msa1222150:intron 30.0%
! TCCAGCTTTATGAGATAATA+AGG - chr8_1:86365493-86365512 None:intergenic 30.0%
TTTAGTAAGCATGTCGTTAA+AGG - chr8_1:86365579-86365598 None:intergenic 30.0%
TAACGACATGCTTACTAAAA+TGG + chr8_1:86365580-86365599 Msa1222150:intron 30.0%
CATGCTTACTAAAATGGTTT+AGG + chr8_1:86365586-86365605 Msa1222150:intron 30.0%
!!! GATTGTGATGTAGTTTTGTT+AGG + chr8_1:86365676-86365695 Msa1222150:intron 30.0%
AAATAGAAAACAAAGAGAGC+AGG + chr8_1:86365819-86365838 Msa1222150:intron 30.0%
TAACAGCTAAATGAGACTTT+AGG + chr8_1:86365982-86366001 Msa1222150:intron 30.0%
! GCTCATAATTTGTCTATGTT+TGG + chr8_1:86366088-86366107 Msa1222150:intron 30.0%
TTTGGTGGAATGTAAATCAA+CGG + chr8_1:86366195-86366214 Msa1222150:intron 30.0%
GTTTCAGTTCATTTCTGTTA+GGG - chr8_1:86366345-86366364 None:intergenic 30.0%
AGTTTCAGTTCATTTCTGTT+AGG - chr8_1:86366346-86366365 None:intergenic 30.0%
!! CAATTTTCAGGCTTTCAAAA+TGG + chr8_1:86366553-86366572 Msa1222150:intron 30.0%
ATGTGCAAAATAATTGGAGT+AGG + chr8_1:86366767-86366786 Msa1222150:CDS 30.0%
AAAATAATTGGAGTAGGAGA+AGG + chr8_1:86366773-86366792 Msa1222150:CDS 30.0%
GAACTAGAGAAAGACATATT+AGG - chr8_1:86366993-86367012 None:intergenic 30.0%
GTTTACATGGCAAAAATTCA+AGG - chr8_1:86367352-86367371 None:intergenic 30.0%
AGATTAACTAGCAGTTTACA+TGG - chr8_1:86367365-86367384 None:intergenic 30.0%
ATGTAAACTGCTAGTTAATC+TGG + chr8_1:86367364-86367383 Msa1222150:intron 30.0%
AAGTATCATTTCTACCTGTA+TGG - chr8_1:86367412-86367431 None:intergenic 30.0%
! CTTGGTACATTTTACACTTT+TGG + chr8_1:86367623-86367642 Msa1222150:intron 30.0%
! GAACTGTTTTATAGGTAGTT+TGG + chr8_1:86367798-86367817 Msa1222150:intron 30.0%
!! ACTTAGGTTTTATCAATGCT+TGG - chr8_1:86367870-86367889 None:intergenic 30.0%
CTCATTGGACAATAACATTA+GGG - chr8_1:86368064-86368083 None:intergenic 30.0%
TCTCATTGGACAATAACATT+AGG - chr8_1:86368065-86368084 None:intergenic 30.0%
AATGTTATTGTCCAATGAGA+AGG + chr8_1:86368065-86368084 Msa1222150:intron 30.0%
ATGTTATTGTCCAATGAGAA+GGG + chr8_1:86368066-86368085 Msa1222150:intron 30.0%
! TTTGATTGAACTTGTTCCAT+AGG + chr8_1:86368238-86368257 Msa1222150:intron 30.0%
ACTTGTTCCATAGGAATAAA+AGG + chr8_1:86368247-86368266 Msa1222150:intron 30.0%
CTTGTTCCATAGGAATAAAA+GGG + chr8_1:86368248-86368267 Msa1222150:intron 30.0%
! GAATATCCCTTTTATTCCTA+TGG - chr8_1:86368257-86368276 None:intergenic 30.0%
AGTTATCGCAGGAATAAAAA+TGG - chr8_1:86368589-86368608 None:intergenic 30.0%
ATCATTGATCAGAAAACCAA+TGG + chr8_1:86368661-86368680 Msa1222150:intron 30.0%
!!! TGAGTTTTTTTTTATGCGTC+TGG + chr8_1:86368934-86368953 Msa1222150:intron 30.0%
! TCATTTGGAATCTCTTGATT+TGG + chr8_1:86369028-86369047 Msa1222150:intron 30.0%
AAACAGCTGAACAAAATATG+TGG - chr8_1:86369078-86369097 None:intergenic 30.0%
ATAAATAAGTACACCCATTC+TGG + chr8_1:86369195-86369214 Msa1222150:intron 30.0%
AATTATGGTGATAGAGGAAA+TGG - chr8_1:86369234-86369253 None:intergenic 30.0%
! TCCTCTATCACCATAATTTT+AGG + chr8_1:86369236-86369255 Msa1222150:intron 30.0%
! CCTCTATCACCATAATTTTA+GGG + chr8_1:86369237-86369256 Msa1222150:intron 30.0%
! CTCTATCACCATAATTTTAG+GGG + chr8_1:86369238-86369257 Msa1222150:intron 30.0%
TGTGGGATTAGAAATATTAC+AGG + chr8_1:86369373-86369392 Msa1222150:intron 30.0%
GTGGGATTAGAAATATTACA+GGG + chr8_1:86369374-86369393 Msa1222150:intron 30.0%
! AGAACTCTTTTATCAACAGA+TGG - chr8_1:86369487-86369506 None:intergenic 30.0%
! ATCTGTTGATAAAAGAGTTC+TGG + chr8_1:86369486-86369505 Msa1222150:intron 30.0%
TGATCAATGGAAGTTCTTAT+TGG + chr8_1:86369550-86369569 Msa1222150:intron 30.0%
TAGCATGTAGTGTTGTAAAT+TGG + chr8_1:86369773-86369792 Msa1222150:three_prime_UTR 30.0%
AGCATGTAGTGTTGTAAATT+GGG + chr8_1:86369774-86369793 Msa1222150:three_prime_UTR 30.0%
TATTCATTTGACCTCATTCA+TGG + chr8_1:86369912-86369931 Msa1222150:three_prime_UTR 30.0%
ATTCATTTGACCTCATTCAT+GGG + chr8_1:86369913-86369932 Msa1222150:three_prime_UTR 30.0%
TAACGACCAAAAACATCTAA+AGG - chr8_1:86370014-86370033 None:intergenic 30.0%
ATCTTCATTAGGTTCGTGTA+AGG - chr8_1:86365655-86365674 None:intergenic 35.0%
CATCACAATCGATCTTCATT+AGG - chr8_1:86365666-86365685 None:intergenic 35.0%
CATGTATCGTATGAGTTTGA+TGG + chr8_1:86365887-86365906 Msa1222150:CDS 35.0%
!! TAACTTGTTTCGATCTAGAC+CGG - chr8_1:86365934-86365953 None:intergenic 35.0%
!!! GACTTTAGGTTTTCTGAAAC+TGG + chr8_1:86365996-86366015 Msa1222150:intron 35.0%
TTCTGCAATGTCATGAACAA+TGG - chr8_1:86366055-86366074 None:intergenic 35.0%
ATTGTTCATGACATTGCAGA+AGG + chr8_1:86366054-86366073 Msa1222150:CDS 35.0%
! TTGTCTATGTTTGGTGAAAC+TGG + chr8_1:86366097-86366116 Msa1222150:intron 35.0%
AAGTTTAGATGAAGTCAGTC+AGG + chr8_1:86366162-86366181 Msa1222150:intron 35.0%
CAGTCAGGTGAGTAATAATT+TGG + chr8_1:86366177-86366196 Msa1222150:intron 35.0%
TCAGGTGAGTAATAATTTGG+TGG + chr8_1:86366180-86366199 Msa1222150:intron 35.0%
TTGGTGGAATGTAAATCAAC+GGG + chr8_1:86366196-86366215 Msa1222150:intron 35.0%
CTAATAGGGGCTAATACAAA+AGG + chr8_1:86366402-86366421 Msa1222150:intron 35.0%
ACGCCCAGTATTATAATGAT+AGG - chr8_1:86366491-86366510 None:intergenic 35.0%
! AATGGCAGAAGCTTTAACAT+AGG + chr8_1:86366571-86366590 Msa1222150:intron 35.0%
AACTCATCGACAAAATGACA+AGG - chr8_1:86366813-86366832 None:intergenic 35.0%
TTGAGAAAACTCATGTCTGT+TGG + chr8_1:86366847-86366866 Msa1222150:intron 35.0%
! GAATTTTCACACTGAAGGAA+AGG + chr8_1:86366878-86366897 Msa1222150:intron 35.0%
GAAAGGAAATTACTGAGTTG+TGG + chr8_1:86366895-86366914 Msa1222150:CDS 35.0%
!!! AGGTTTTGGAGGAAAATGAA+AGG + chr8_1:86367040-86367059 Msa1222150:intron 35.0%
TCCATTCAAACATGTTCCAA+GGG + chr8_1:86367207-86367226 Msa1222150:intron 35.0%
ATGTTCCAAGGGATTAAAAC+TGG + chr8_1:86367218-86367237 Msa1222150:intron 35.0%
CTAATTCAACACCCATTGAT+AGG - chr8_1:86367277-86367296 None:intergenic 35.0%
!! GATAATGCTACATTTTGGTC+TGG + chr8_1:86367316-86367335 Msa1222150:intron 35.0%
GTAGCCTATAGATAACAAAC+AGG - chr8_1:86367689-86367708 None:intergenic 35.0%
AGACAAGCAGTTCTATCAAA+TGG - chr8_1:86367836-86367855 None:intergenic 35.0%
! AACGGAAAAGAGTACAATGA+AGG + chr8_1:86368401-86368420 Msa1222150:intron 35.0%
! ACGGAAAAGAGTACAATGAA+GGG + chr8_1:86368402-86368421 Msa1222150:intron 35.0%
! GAATTTTTCTGTTCAACTGC+TGG + chr8_1:86368549-86368568 Msa1222150:CDS 35.0%
AAACATGTGTAAGTTATCGC+AGG - chr8_1:86368600-86368619 None:intergenic 35.0%
GTTGTTGAAATCTCAACCAT+TGG - chr8_1:86368680-86368699 None:intergenic 35.0%
AAAGGATTGATGCACTTTAG+AGG - chr8_1:86368786-86368805 None:intergenic 35.0%
! TATAATCTGAAGCTGAGAAG+TGG + chr8_1:86368858-86368877 Msa1222150:intron 35.0%
!!! TCTTTTTTGTTGGAGATTGC+TGG + chr8_1:86368959-86368978 Msa1222150:intron 35.0%
ATGACATTCCATCTCATAGT+AGG - chr8_1:86369012-86369031 None:intergenic 35.0%
CTATGAGATGGAATGTCATT+TGG + chr8_1:86369013-86369032 Msa1222150:intron 35.0%
AGATCATCCATTTCCAGAAT+GGG - chr8_1:86369211-86369230 None:intergenic 35.0%
CCCTAAAATTATGGTGATAG+AGG - chr8_1:86369240-86369259 None:intergenic 35.0%
GATTAGAAATATTACAGGGC+AGG + chr8_1:86369378-86369397 Msa1222150:intron 35.0%
CTCTTTGATCAACCATAATC+AGG - chr8_1:86369447-86369466 None:intergenic 35.0%
TCAATGGAAGTTCTTATTGG+AGG + chr8_1:86369553-86369572 Msa1222150:intron 35.0%
! AGGAAAATTTGACGTTTTGC+AGG + chr8_1:86369573-86369592 Msa1222150:intron 35.0%
! GGAAAATTTGACGTTTTGCA+GGG + chr8_1:86369574-86369593 Msa1222150:intron 35.0%
AGTTGAATCAGAATGACAAG+GGG - chr8_1:86369668-86369687 None:intergenic 35.0%
GAGTTGAATCAGAATGACAA+GGG - chr8_1:86369669-86369688 None:intergenic 35.0%
AGAGTTGAATCAGAATGACA+AGG - chr8_1:86369670-86369689 None:intergenic 35.0%
TTGTCATTCTGATTCAACTC+TGG + chr8_1:86369669-86369688 Msa1222150:three_prime_UTR 35.0%
!! TGATTCAACTCTGGAGTTTA+TGG + chr8_1:86369678-86369697 Msa1222150:three_prime_UTR 35.0%
GTACAGATCACCAAAATAGT+AGG + chr8_1:86369840-86369859 Msa1222150:three_prime_UTR 35.0%
! TTCATGCACACCTACTATTT+TGG - chr8_1:86369853-86369872 None:intergenic 35.0%
TTCATTTGACCTCATTCATG+GGG + chr8_1:86369914-86369933 Msa1222150:three_prime_UTR 35.0%
TACTTTCATGAGTTCCATGT+GGG + chr8_1:86369937-86369956 Msa1222150:three_prime_UTR 35.0%
! GGTTTTACTTACATGGAAGT+AGG + chr8_1:86369962-86369981 Msa1222150:three_prime_UTR 35.0%
! TAAAGGCACAACAAAAGCAA+TGG - chr8_1:86369997-86370016 None:intergenic 35.0%
! GTTGTGCCTTTAGATGTTTT+TGG + chr8_1:86370005-86370024 Msa1222150:three_prime_UTR 35.0%
TTCCATTAAAAGTTCCCCTT+TGG + chr8_1:86370073-86370092 Msa1222150:three_prime_UTR 35.0%
AGTGGCCATGAGAAAATTTC+TGG - chr8_1:86365293-86365312 None:intergenic 40.0%
ATTAATGCAGACGTACCTTG+AGG - chr8_1:86365453-86365472 None:intergenic 40.0%
AGAAAACAAAGAGAGCAGGA+TGG + chr8_1:86365823-86365842 Msa1222150:intron 40.0%
GAAAACAAAGAGAGCAGGAT+GGG + chr8_1:86365824-86365843 Msa1222150:intron 40.0%
ATGGGTGAGAAGAGATGTTA+AGG + chr8_1:86365842-86365861 Msa1222150:CDS 40.0%
ATGTGATCAGCTACAGATTC+TGG - chr8_1:86365870-86365889 None:intergenic 40.0%
! AACTTGTTTCGATCTAGACC+GGG - chr8_1:86365933-86365952 None:intergenic 40.0%
GAATGTAAATCAACGGGATC+TGG + chr8_1:86366202-86366221 Msa1222150:intron 40.0%
AACTTTCAGTTATGCCTAGC+TGG + chr8_1:86366374-86366393 Msa1222150:intron 40.0%
CCTAGCTGGCATAACTAATA+GGG + chr8_1:86366388-86366407 Msa1222150:intron 40.0%
CTAGCTGGCATAACTAATAG+GGG + chr8_1:86366389-86366408 Msa1222150:intron 40.0%
AGTGTTAAGTGACAGAGTCT+AGG + chr8_1:86366446-86366465 Msa1222150:intron 40.0%
GTGTTAAGTGACAGAGTCTA+GGG + chr8_1:86366447-86366466 Msa1222150:intron 40.0%
! TAGTTCCAAGTAGGAAGCAT+GGG - chr8_1:86366629-86366648 None:intergenic 40.0%
ATAGTTCCAAGTAGGAAGCA+TGG - chr8_1:86366630-86366649 None:intergenic 40.0%
!!! TGCTTTTGAAACTCCATCCA+GGG - chr8_1:86366711-86366730 None:intergenic 40.0%
GGAAATTACTGAGTTGTGGA+TGG + chr8_1:86366899-86366918 Msa1222150:CDS 40.0%
TCCAGAAGCGAAATTTGTCA+AGG + chr8_1:86366941-86366960 Msa1222150:CDS 40.0%
TCCTTGACAAATTTCGCTTC+TGG - chr8_1:86366945-86366964 None:intergenic 40.0%
ATTTGTCAAGGACCTTGACA+AGG + chr8_1:86366953-86366972 Msa1222150:CDS 40.0%
AAAAGCCACAAACCTTGTCA+AGG - chr8_1:86366968-86366987 None:intergenic 40.0%
! TTGACAAGGTTTGTGGCTTT+TGG + chr8_1:86366967-86366986 Msa1222150:intron 40.0%
CTTGGAACATGTTTGAATGG+AGG - chr8_1:86367208-86367227 None:intergenic 40.0%
CTCCATTCAAACATGTTCCA+AGG + chr8_1:86367206-86367225 Msa1222150:intron 40.0%
TCCCTTGGAACATGTTTGAA+TGG - chr8_1:86367211-86367230 None:intergenic 40.0%
TTCCAAGGGATTAAAACTGG+AGG + chr8_1:86367221-86367240 Msa1222150:intron 40.0%
TCCAAGGGATTAAAACTGGA+GGG + chr8_1:86367222-86367241 Msa1222150:intron 40.0%
AGAAATGATACTTCAAGCGC+TGG + chr8_1:86367419-86367438 Msa1222150:CDS 40.0%
TGGATTATGAAGATGGTGAG+TGG + chr8_1:86367439-86367458 Msa1222150:intron 40.0%
TGCGTATAATTGAGACCAGA+GGG - chr8_1:86367925-86367944 None:intergenic 40.0%
TTGCGTATAATTGAGACCAG+AGG - chr8_1:86367926-86367945 None:intergenic 40.0%
TTATTGTCCAATGAGAAGGG+AGG + chr8_1:86368069-86368088 Msa1222150:intron 40.0%
TCGCAGGAATAAAAATGGTG+CGG - chr8_1:86368584-86368603 None:intergenic 40.0%
AACACCATCAGATATAGCCT+AGG - chr8_1:86368886-86368905 None:intergenic 40.0%
!!! GCGTCTGGAATCTTTTTTGT+TGG + chr8_1:86368949-86368968 Msa1222150:intron 40.0%
! TGATTTGGAGATTGATCCTG+CGG + chr8_1:86369043-86369062 Msa1222150:intron 40.0%
TATGTGGAAGATAAAACCGC+AGG - chr8_1:86369062-86369081 None:intergenic 40.0%
! ATGAACAGTCATTTGTTGCC+AGG + chr8_1:86369163-86369182 Msa1222150:intron 40.0%
! TGAACAGTCATTTGTTGCCA+GGG + chr8_1:86369164-86369183 Msa1222150:intron 40.0%
! AAGTACACCCATTCTGGAAA+TGG + chr8_1:86369201-86369220 Msa1222150:intron 40.0%
GAGATCATCCATTTCCAGAA+TGG - chr8_1:86369212-86369231 None:intergenic 40.0%
AGTGAGTGGCAATAGAAGAA+TGG - chr8_1:86369325-86369344 None:intergenic 40.0%
ATCAACAGATGGCAATCATC+TGG - chr8_1:86369476-86369495 None:intergenic 40.0%
AAGCTTTGCCAACTTCAGTT+TGG - chr8_1:86369605-86369624 None:intergenic 40.0%
AAACTGAAGTTGGCAAAGCT+TGG + chr8_1:86369604-86369623 Msa1222150:CDS 40.0%
AACTGAAGTTGGCAAAGCTT+GGG + chr8_1:86369605-86369624 Msa1222150:CDS 40.0%
CATCAGAGATTGTATCGAGA+AGG + chr8_1:86369628-86369647 Msa1222150:CDS 40.0%
TCAGAATGACAAGGGGATTT+AGG - chr8_1:86369661-86369680 None:intergenic 40.0%
TTTCCACTTCCATCTTGAGA+GGG - chr8_1:86369708-86369727 None:intergenic 40.0%
TCTCAAGATGGAAGTGGAAA+GGG + chr8_1:86369708-86369727 Msa1222150:three_prime_UTR 40.0%
TGTTGTAAATTGGGAATCCG+TGG + chr8_1:86369783-86369802 Msa1222150:three_prime_UTR 40.0%
GGAGATCTCTTAACACTGTA+AGG + chr8_1:86369810-86369829 Msa1222150:three_prime_UTR 40.0%
!! ATGAAAGTACCCCATGAATG+AGG - chr8_1:86369926-86369945 None:intergenic 40.0%
GTACTTTCATGAGTTCCATG+TGG + chr8_1:86369936-86369955 Msa1222150:three_prime_UTR 40.0%
GTAAGTAAAACCAACCCACA+TGG - chr8_1:86369954-86369973 None:intergenic 40.0%
!!! GTGGGTTGGTTTTACTTACA+TGG + chr8_1:86369955-86369974 Msa1222150:three_prime_UTR 40.0%
! CACCAAAGGGGAACTTTTAA+TGG - chr8_1:86370078-86370097 None:intergenic 40.0%
CATTAAAAGTTCCCCTTTGG+TGG + chr8_1:86370076-86370095 Msa1222150:three_prime_UTR 40.0%
GCCTAGCTGGCATAACTAAT+AGG + chr8_1:86366387-86366406 Msa1222150:intron 45.0%
CCCTATTAGTTATGCCAGCT+AGG - chr8_1:86366391-86366410 None:intergenic 45.0%
TAAGTGACAGAGTCTAGGGA+AGG + chr8_1:86366451-86366470 Msa1222150:intron 45.0%
!!! TTTTGAAACTCCATCCAGGG+GGG - chr8_1:86366708-86366727 None:intergenic 45.0%
!!! CTTTTGAAACTCCATCCAGG+GGG - chr8_1:86366709-86366728 None:intergenic 45.0%
!!! GCTTTTGAAACTCCATCCAG+GGG - chr8_1:86366710-86366729 None:intergenic 45.0%
!!! CTGCTTTTGAAACTCCATCC+AGG - chr8_1:86366712-86366731 None:intergenic 45.0%
AAGGACCTTGACAAGGTTTG+TGG + chr8_1:86366960-86366979 Msa1222150:intron 45.0%
!!! CACATCTGCGCTTTAGCTTT+TGG + chr8_1:86367012-86367031 Msa1222150:intron 45.0%
!! AGCTTTTGGCTGGTAGGTTT+TGG + chr8_1:86367026-86367045 Msa1222150:intron 45.0%
!! TTTTGGCTGGTAGGTTTTGG+AGG + chr8_1:86367029-86367048 Msa1222150:intron 45.0%
GATTAAAACTGGAGGGCCTA+GGG + chr8_1:86367229-86367248 Msa1222150:intron 45.0%
TGGACAGGATGTCCTATCAA+TGG + chr8_1:86367262-86367281 Msa1222150:intron 45.0%
GGACAGGATGTCCTATCAAT+GGG + chr8_1:86367263-86367282 Msa1222150:intron 45.0%
!! CAAGCGCTGGATTATGAAGA+TGG + chr8_1:86367432-86367451 Msa1222150:CDS 45.0%
GCGTATAATTGAGACCAGAG+GGG - chr8_1:86367924-86367943 None:intergenic 45.0%
! CCTTTTTCCTCCCTTCTCAT+TGG - chr8_1:86368079-86368098 None:intergenic 45.0%
CCAATGAGAAGGGAGGAAAA+AGG + chr8_1:86368076-86368095 Msa1222150:intron 45.0%
GGATCCTAGGCTATATCTGA+TGG + chr8_1:86368879-86368898 Msa1222150:intron 45.0%
ACCTGCTTCCTACTATGAGA+TGG + chr8_1:86369001-86369020 Msa1222150:intron 45.0%
TCCATCTCATAGTAGGAAGC+AGG - chr8_1:86369005-86369024 None:intergenic 45.0%
!! TGAGCACTGAAGACAACATG+AGG + chr8_1:86369104-86369123 Msa1222150:intron 45.0%
!! GAGCACTGAAGACAACATGA+GGG + chr8_1:86369105-86369124 Msa1222150:intron 45.0%
! GCAGAAATGAGTAGGAGTGT+GGG + chr8_1:86369130-86369149 Msa1222150:intron 45.0%
CACTCACTGATGAAACACGA+GGG + chr8_1:86369337-86369356 Msa1222150:intron 45.0%
TGATGAAACACGAGGGAAGT+TGG + chr8_1:86369344-86369363 Msa1222150:intron 45.0%
GATGAAACACGAGGGAAGTT+GGG + chr8_1:86369345-86369364 Msa1222150:intron 45.0%
ATGAAACACGAGGGAAGTTG+GGG + chr8_1:86369346-86369365 Msa1222150:intron 45.0%
GGGAAGTTCCAAACTGAAGT+TGG + chr8_1:86369594-86369613 Msa1222150:intron 45.0%
TATGGATCTCCCTCTCAAGA+TGG + chr8_1:86369696-86369715 Msa1222150:three_prime_UTR 45.0%
CTTTCCACTTCCATCTTGAG+AGG - chr8_1:86369709-86369728 None:intergenic 45.0%
CTCTCAAGATGGAAGTGGAA+AGG + chr8_1:86369707-86369726 Msa1222150:three_prime_UTR 45.0%
AAATTGGGAATCCGTGGTGA+CGG + chr8_1:86369789-86369808 Msa1222150:three_prime_UTR 45.0%
TTAAGAGATCTCCGTCACCA+CGG - chr8_1:86369803-86369822 None:intergenic 45.0%
TTCATGAGTTCCATGTGGGT+TGG + chr8_1:86369941-86369960 Msa1222150:three_prime_UTR 45.0%
TTGAACATGGCTCCACCAAA+GGG - chr8_1:86370091-86370110 None:intergenic 45.0%
TCTGGTGAAAGTCGGTGTGT+GGG - chr8_1:86365275-86365294 None:intergenic 50.0%
TTCTGGTGAAAGTCGGTGTG+TGG - chr8_1:86365276-86365295 None:intergenic 50.0%
! TGATGATGCTGAAGGTGCAG+TGG - chr8_1:86365311-86365330 None:intergenic 50.0%
AGCATCATCATCGCCGTCAA+CGG + chr8_1:86365321-86365340 Msa1222150:CDS 50.0%
ACAGACAGTGAGGAACTCGA+TGG - chr8_1:86365425-86365444 None:intergenic 50.0%
AATGCAGACGTACCTTGAGG+TGG - chr8_1:86365450-86365469 None:intergenic 50.0%
CTGATTGCACCAGATGTTCC+CGG + chr8_1:86365912-86365931 Msa1222150:CDS 50.0%
TCACACCCATGCTTCCTACT+TGG + chr8_1:86366621-86366640 Msa1222150:intron 50.0%
!!! TCTGCGCTTTAGCTTTTGGC+TGG + chr8_1:86367016-86367035 Msa1222150:intron 50.0%
!!! CGCTTTAGCTTTTGGCTGGT+AGG + chr8_1:86367020-86367039 Msa1222150:intron 50.0%
!! GCCCTCCAGTTTTAATCCCT+TGG - chr8_1:86367226-86367245 None:intergenic 50.0%
GGATTAAAACTGGAGGGCCT+AGG + chr8_1:86367228-86367247 Msa1222150:intron 50.0%
!! TCATGGCTTTGTGCAGAGCA+AGG + chr8_1:86368513-86368532 Msa1222150:intron 50.0%
!! CATGGCTTTGTGCAGAGCAA+GGG + chr8_1:86368514-86368533 Msa1222150:intron 50.0%
TGCAGAGCAAGGGAAGGATT+TGG + chr8_1:86368524-86368543 Msa1222150:intron 50.0%
GAAGCTGAGAAGTGGATCCT+AGG + chr8_1:86368866-86368885 Msa1222150:intron 50.0%
CACTGAAGACAACATGAGGG+TGG + chr8_1:86369108-86369127 Msa1222150:intron 50.0%
TGAGGGTGGCAGAAATGAGT+AGG + chr8_1:86369122-86369141 Msa1222150:intron 50.0%
GGCAGAAATGAGTAGGAGTG+TGG + chr8_1:86369129-86369148 Msa1222150:intron 50.0%
CCTCGTGTTTCATCAGTGAG+TGG - chr8_1:86369339-86369358 None:intergenic 50.0%
CCACTCACTGATGAAACACG+AGG + chr8_1:86369336-86369355 Msa1222150:intron 50.0%
TCTCCCTCTCAAGATGGAAG+TGG + chr8_1:86369702-86369721 Msa1222150:three_prime_UTR 50.0%
TGAACATGGCTCCACCAAAG+GGG - chr8_1:86370090-86370109 None:intergenic 50.0%
GTTGAACATGGCTCCACCAA+AGG - chr8_1:86370092-86370111 None:intergenic 50.0%
AAGTCGGTGTGTGGGAGAGA+TGG - chr8_1:86365267-86365286 None:intergenic 55.0%
! GACGGCGATGATGATGCTGA+AGG - chr8_1:86365319-86365338 None:intergenic 55.0%
AGGAGTGGTGTTTGTGTCGC+CGG - chr8_1:86365353-86365372 None:intergenic 55.0%
CACTCCTCCGCCATCTTCTT+CGG + chr8_1:86365366-86365385 Msa1222150:CDS 55.0%
! TCTGGAACCGCCGAAGAAGA+TGG - chr8_1:86365379-86365398 None:intergenic 55.0%
!! AACGGAGAAGGGGAAGCATC+TGG - chr8_1:86365397-86365416 None:intergenic 55.0%
! AGGAACTCGATGGCGGCAAA+CGG - chr8_1:86365415-86365434 None:intergenic 55.0%
GACAGTGAGGAACTCGATGG+CGG - chr8_1:86365422-86365441 None:intergenic 55.0%
TGAGGTGGTGACAGACAGTG+AGG - chr8_1:86365435-86365454 None:intergenic 55.0%
CACTGTCTGTCACCACCTCA+AGG + chr8_1:86365435-86365454 Msa1222150:CDS 55.0%
CGATCTAGACCGGGAACATC+TGG - chr8_1:86365924-86365943 None:intergenic 55.0%
GTGACAGAGTCTAGGGAAGG+TGG + chr8_1:86366454-86366473 Msa1222150:intron 55.0%
GGAGTAGGAGAAGGATCGAG+AGG + chr8_1:86366782-86366801 Msa1222150:CDS 55.0%
TGTCCACCCTTCTTCTCCCT+AGG - chr8_1:86367248-86367267 None:intergenic 55.0%
TAGGGAGAAGAAGGGTGGAC+AGG + chr8_1:86367247-86367266 Msa1222150:intron 55.0%
TTTGCACTCTGATGCCCCTC+TGG + chr8_1:86367907-86367926 Msa1222150:intron 55.0%
GCTTTGTGCAGAGCAAGGGA+AGG + chr8_1:86368518-86368537 Msa1222150:intron 55.0%
AAACACGAGGGAAGTTGGGG+TGG + chr8_1:86369349-86369368 Msa1222150:intron 55.0%
AACACGAGGGAAGTTGGGGT+GGG + chr8_1:86369350-86369369 Msa1222150:intron 55.0%
ATGGAAGTGGAAAGGGCGAG+AGG + chr8_1:86369715-86369734 Msa1222150:three_prime_UTR 55.0%
TGGAAGTGGAAAGGGCGAGA+GGG + chr8_1:86369716-86369735 Msa1222150:three_prime_UTR 55.0%
!! CGAAGAAGATGGCGGAGGAG+TGG - chr8_1:86365368-86365387 None:intergenic 60.0%
TCCTCCGCCATCTTCTTCGG+CGG + chr8_1:86365369-86365388 Msa1222150:CDS 60.0%
GGAACCGCCGAAGAAGATGG+CGG - chr8_1:86365376-86365395 None:intergenic 60.0%
! GATGGCGGCAAACGGAGAAG+GGG - chr8_1:86365407-86365426 None:intergenic 60.0%
! CGATGGCGGCAAACGGAGAA+GGG - chr8_1:86365408-86365427 None:intergenic 60.0%
! TCGATGGCGGCAAACGGAGA+AGG - chr8_1:86365409-86365428 None:intergenic 60.0%
GATTGGGGACATTACCCCCC+TGG + chr8_1:86366691-86366710 Msa1222150:CDS 60.0%
TGGAGGGCCTAGGGAGAAGA+AGG + chr8_1:86367238-86367257 Msa1222150:intron 60.0%
GGAGGGCCTAGGGAGAAGAA+GGG + chr8_1:86367239-86367258 Msa1222150:intron 60.0%
AGGGAAGTTGGGGTGGGTGT+GGG + chr8_1:86369356-86369375 Msa1222150:intron 60.0%
TCGCCGTCAACGGCTGTCAC+CGG + chr8_1:86365331-86365350 Msa1222150:CDS 65.0%
TCGCCGGTGACAGCCGTTGA+CGG - chr8_1:86365337-86365356 None:intergenic 65.0%
! ACCGCCGAAGAAGATGGCGG+AGG - chr8_1:86365373-86365392 None:intergenic 65.0%
GGGGACATTACCCCCCTGGA+TGG + chr8_1:86366695-86366714 Msa1222150:CDS 65.0%
GGGCCTAGGGAGAAGAAGGG+TGG + chr8_1:86367242-86367261 Msa1222150:intron 65.0%
GAGGGAAGTTGGGGTGGGTG+TGG + chr8_1:86369355-86369374 Msa1222150:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 86365179 86370113 86365179 ID=Msa1222150;Name=Msa1222150
chr8_1 mRNA 86365179 86370113 86365179 ID=Msa1222150-mRNA-1;Parent=Msa1222150;Name=Msa1222150-mRNA-1;_AED=0.28;_eAED=0.28;_QI=125|1|1|1|0.85|1|8|451|219
chr8_1 exon 86365179 86365456 86365179 ID=Msa1222150-mRNA-1:exon:31018;Parent=Msa1222150-mRNA-1
chr8_1 exon 86365825 86365949 86365825 ID=Msa1222150-mRNA-1:exon:31019;Parent=Msa1222150-mRNA-1
chr8_1 exon 86366038 86366075 86366038 ID=Msa1222150-mRNA-1:exon:31020;Parent=Msa1222150-mRNA-1
chr8_1 exon 86366687 86366803 86366687 ID=Msa1222150-mRNA-1:exon:31021;Parent=Msa1222150-mRNA-1
chr8_1 exon 86366895 86366974 86366895 ID=Msa1222150-mRNA-1:exon:31022;Parent=Msa1222150-mRNA-1
chr8_1 exon 86367417 86367453 86367417 ID=Msa1222150-mRNA-1:exon:31023;Parent=Msa1222150-mRNA-1
chr8_1 exon 86368529 86368570 86368529 ID=Msa1222150-mRNA-1:exon:31024;Parent=Msa1222150-mRNA-1
chr8_1 exon 86369595 86370113 86369595 ID=Msa1222150-mRNA-1:exon:31025;Parent=Msa1222150-mRNA-1
chr8_1 five_prime_UTR 86365179 86365303 86365179 ID=Msa1222150-mRNA-1:five_prime_utr;Parent=Msa1222150-mRNA-1
chr8_1 CDS 86365304 86365456 86365304 ID=Msa1222150-mRNA-1:cds;Parent=Msa1222150-mRNA-1
chr8_1 CDS 86365825 86365949 86365825 ID=Msa1222150-mRNA-1:cds;Parent=Msa1222150-mRNA-1
chr8_1 CDS 86366038 86366075 86366038 ID=Msa1222150-mRNA-1:cds;Parent=Msa1222150-mRNA-1
chr8_1 CDS 86366687 86366803 86366687 ID=Msa1222150-mRNA-1:cds;Parent=Msa1222150-mRNA-1
chr8_1 CDS 86366895 86366974 86366895 ID=Msa1222150-mRNA-1:cds;Parent=Msa1222150-mRNA-1
chr8_1 CDS 86367417 86367453 86367417 ID=Msa1222150-mRNA-1:cds;Parent=Msa1222150-mRNA-1
chr8_1 CDS 86368529 86368570 86368529 ID=Msa1222150-mRNA-1:cds;Parent=Msa1222150-mRNA-1
chr8_1 CDS 86369595 86369662 86369595 ID=Msa1222150-mRNA-1:cds;Parent=Msa1222150-mRNA-1
chr8_1 three_prime_UTR 86369663 86370113 86369663 ID=Msa1222150-mRNA-1:three_prime_utr;Parent=Msa1222150-mRNA-1
Gene Sequence

>Msa1222150

ATGGCCACTGCACCTTCAGCATCATCATCGCCGTCAACGGCTGTCACCGGCGACACAAACACCACTCCTCCGCCATCTTCTTCGGCGGTTCCAGATGCTTCCCCTTCTCCGTTTGCCGCCATCGAGTTCCTCACTGTCTGTCACCACCTCAAGAAAACAAAGAGAGCAGGATGGGTGAGAAGAGATGTTAAGGATCCAGAATCTGTAGCTGATCACATGTATCGTATGAGTTTGATGGCTCTGATTGCACCAGATGTTCCCGGTCTAGATCGAAACAAGTGCATAAAAATGGCCATTGTTCATGACATTGCAGAAGCTTTGATTGGGGACATTACCCCCCTGGATGGAGTTTCAAAAGCAGATAAGAGTGAACGAGAACAAGCTGCACTTGAGTATATGTGCAAAATAATTGGAGTAGGAGAAGGATCGAGAGGAAAGGAAATTACTGAGTTGTGGATGGACTATGAAGCAAATTCTTCTCCAGAAGCGAAATTTGTCAAGGACCTTGACAAGGTAGAAATGATACTTCAAGCGCTGGATTATGAAGATGAGCAAGGGAAGGATTTGGATGAATTTTTCTGTTCAACTGCTGGGAAGTTCCAAACTGAAGTTGGCAAAGCTTGGGCATCAGAGATTGTATCGAGAAGGAGTAATACCTAA
Protein sequence

>Msa1222150

MATAPSASSSPSTAVTGDTNTTPPPSSSAVPDASPSPFAAIEFLTVCHHLKKTKRAGWVRRDVKDPESVADHMYRMSLMALIAPDVPGLDRNKCIKMAIVHDIAEALIGDITPLDGVSKADKSEREQAALEYMCKIIGVGEGSRGKEITELWMDYEANSSPEAKFVKDLDKVEMILQALDYEDEQGKDLDEFFCSTAGKFQTEVGKAWASEIVSRRSNT*