AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334080 MtrunA17_Chr4g0073361 99.543 219 1 0 1 219 1 219 6.56e-164 451
Msa1334080 MtrunA17_Chr4g0073371 85.572 201 29 0 19 219 20 220 1.35e-128 362
Msa1334080 MtrunA17_Chr2g0305421 74.444 180 44 1 40 219 69 246 1.44e-101 294
Msa1334080 MtrunA17_Chr0c01g0489471 67.033 182 58 1 35 216 48 227 1.41e-87 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334080 AT2G23820.2 66.038 212 65 3 7 216 47 253 8.41e-97 283
Msa1334080 AT1G26160.1 66.854 178 57 1 39 216 74 249 2.19e-87 259
Msa1334080 AT2G23820.1 63.776 196 64 3 7 200 47 237 1.55e-84 251
Msa1334080 AT1G26160.2 63.433 134 47 1 39 172 74 205 3.09e-59 186

Find 100 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCAACTCTGGAGTTTA+TGG 0.112842 8_4:+54395879 Msa1334080:three_prime_UTR
TTCATGCACACCTACTATTT+TGG 0.197879 8_4:-54396051 None:intergenic
TAGCATGTAGTGTTGTAAAT+TGG 0.252390 8_4:+54395974 Msa1334080:three_prime_UTR
TCAGAATGACAAGGGGATTT+AGG 0.260938 8_4:-54395859 None:intergenic
TCCTTGACAAATTTCGCTTC+TGG 0.294446 8_4:-54392774 None:intergenic
CTTTGTTTAATAGCTTTGAT+TGG 0.334175 8_4:+54392506 Msa1334080:intron
GAGTATATGTGCAAAATAAT+TGG 0.343221 8_4:+54392593 Msa1334080:CDS
TTTGTTTAATAGCTTTGATT+GGG 0.344798 8_4:+54392507 Msa1334080:intron
TGCAGAGCAAGGGAAGGATT+TGG 0.349198 8_4:+54394368 Msa1334080:intron
TATTCATTTGACCTCATTCA+TGG 0.354910 8_4:+54396113 Msa1334080:three_prime_UTR
TTAAAACTCTGTATCTCAAT+TGG 0.364479 8_4:+54395945 Msa1334080:three_prime_UTR
CATGTATCGTATGAGTTTGA+TGG 0.373720 8_4:+54391719 Msa1334080:CDS
AAGCTTTGCCAACTTCAGTT+TGG 0.374352 8_4:-54395803 None:intergenic
ATGTGATCAGCTACAGATTC+TGG 0.384061 8_4:-54391699 None:intergenic
CGATCTAGACCGGGAACATC+TGG 0.393742 8_4:-54391753 None:intergenic
AGTGGCCATGAGAAAATTTC+TGG 0.407851 8_4:-54391126 None:intergenic
TTCCATTAAAAGTTCCCCTT+TGG 0.408328 8_4:+54396274 Msa1334080:three_prime_UTR
TCGAAACGATTATTGTAAGT+TGG 0.408959 8_4:+54391011 Msa1334080:five_prime_UTR
CATTAAAAGTTCCCCTTTGG+TGG 0.413333 8_4:+54396277 Msa1334080:three_prime_UTR
TGTGTGTGTCTGTGTGTGTA+AGG 0.417567 8_4:-54391091 None:intergenic
ATGGGTGAGAAGAGATGTTA+AGG 0.418352 8_4:+54391674 Msa1334080:CDS
AAACTGAAGTTGGCAAAGCT+TGG 0.426274 8_4:+54395805 Msa1334080:CDS
AACTGAAGTTGGCAAAGCTT+GGG 0.431371 8_4:+54395806 Msa1334080:CDS
CACTCCTCCGCCATCTTCTT+CGG 0.434262 8_4:+54391202 Msa1334080:CDS
CTGATTGCACCAGATGTTCC+CGG 0.439005 8_4:+54391744 Msa1334080:CDS
AACGGAGAAGGGGAAGCATC+TGG 0.439972 8_4:-54391230 None:intergenic
TAACTTGTTTCGATCTAGAC+CGG 0.472474 8_4:-54391763 None:intergenic
TTCATGAGTTCCATGTGGGT+TGG 0.476914 8_4:+54396142 Msa1334080:three_prime_UTR
GGAGATCTCTTAACACTGTA+AGG 0.480112 8_4:+54396011 Msa1334080:three_prime_UTR
AGCATGTAGTGTTGTAAATT+GGG 0.486556 8_4:+54395975 Msa1334080:three_prime_UTR
TCGATGGCGGCAAACGGAGA+AGG 0.488140 8_4:-54391242 None:intergenic
TTGTCATTCTGATTCAACTC+TGG 0.489141 8_4:+54395870 Msa1334080:three_prime_UTR
CTTTCCACTTCCATCTTGAG+AGG 0.490813 8_4:-54395907 None:intergenic
GTACAGATCACCAAAATAGT+AGG 0.499428 8_4:+54396041 Msa1334080:three_prime_UTR
TCGCCGTCAACGGCTGTCAC+CGG 0.505620 8_4:+54391167 Msa1334080:CDS
TACTTTCATGAGTTCCATGT+GGG 0.505884 8_4:+54396138 Msa1334080:three_prime_UTR
TCGCCGGTGACAGCCGTTGA+CGG 0.508212 8_4:-54391170 None:intergenic
GGGAAGTTCCAAACTGAAGT+TGG 0.509544 8_4:+54395795 Msa1334080:intron
ATTCATTTGACCTCATTCAT+GGG 0.511056 8_4:+54396114 Msa1334080:three_prime_UTR
TCTGGAACCGCCGAAGAAGA+TGG 0.513692 8_4:-54391212 None:intergenic
AGGAACTCGATGGCGGCAAA+CGG 0.518252 8_4:-54391248 None:intergenic
AGAAATGATACTTCAAGCGC+TGG 0.518813 8_4:+54393263 Msa1334080:CDS
AGGAGTGGTGTTTGTGTCGC+CGG 0.521452 8_4:-54391186 None:intergenic
CAAGCGCTGGATTATGAAGA+TGG 0.525283 8_4:+54393276 Msa1334080:CDS
CGATGGCGGCAAACGGAGAA+GGG 0.527059 8_4:-54391241 None:intergenic
TCTCCCTCTCAAGATGGAAG+TGG 0.527616 8_4:+54395903 Msa1334080:three_prime_UTR
TCTCAAGATGGAAGTGGAAA+GGG 0.527642 8_4:+54395909 Msa1334080:three_prime_UTR
TTGAACATGGCTCCACCAAA+GGG 0.528449 8_4:-54396289 None:intergenic
CTCTCAAGATGGAAGTGGAA+AGG 0.538234 8_4:+54395908 Msa1334080:three_prime_UTR
GTTGAACATGGCTCCACCAA+AGG 0.538597 8_4:-54396290 None:intergenic
GAAAGGAAATTACTGAGTTG+TGG 0.542127 8_4:+54392727 Msa1334080:CDS
GAAAACAAAGAGAGCAGGAT+GGG 0.546416 8_4:+54391656 Msa1334080:intron
CATGGCTTTGTGCAGAGCAA+GGG 0.552135 8_4:+54394358 Msa1334080:intron
GGAAATTACTGAGTTGTGGA+TGG 0.552309 8_4:+54392731 Msa1334080:CDS
AAATAGAAAACAAAGAGAGC+AGG 0.561932 8_4:+54391651 Msa1334080:intron
TTTCCACTTCCATCTTGAGA+GGG 0.562257 8_4:-54395906 None:intergenic
AAAATAATTGGAGTAGGAGA+AGG 0.564730 8_4:+54392605 Msa1334080:CDS
ATGTGCAAAATAATTGGAGT+AGG 0.567978 8_4:+54392599 Msa1334080:CDS
TTGTTTAATAGCTTTGATTG+GGG 0.568878 8_4:+54392508 Msa1334080:intron
AGCATCATCATCGCCGTCAA+CGG 0.572033 8_4:+54391157 Msa1334080:CDS
CGAAGAAGATGGCGGAGGAG+TGG 0.574074 8_4:-54391201 None:intergenic
AGAAAATTTCTGGTGAAAGT+CGG 0.575948 8_4:-54391116 None:intergenic
TATGGATCTCCCTCTCAAGA+TGG 0.576940 8_4:+54395897 Msa1334080:three_prime_UTR
AAGGTTCTCGTGGTTGAACA+TGG 0.586993 8_4:-54396302 None:intergenic
TCTGTGTGTGTAAGGAGAGA+TGG 0.587184 8_4:-54391083 None:intergenic
TCCTCCGCCATCTTCTTCGG+CGG 0.587721 8_4:+54391205 Msa1334080:CDS
AAATTGGGAATCCGTGGTGA+CGG 0.588814 8_4:+54395990 Msa1334080:three_prime_UTR
ATGAAAGTACCCCATGAATG+AGG 0.595670 8_4:-54396124 None:intergenic
ATTGTTCATGACATTGCAGA+AGG 0.599587 8_4:+54391886 Msa1334080:CDS
TCCAGAAGCGAAATTTGTCA+AGG 0.599615 8_4:+54392773 Msa1334080:CDS
TTCATTTGACCTCATTCATG+GGG 0.599939 8_4:+54396115 Msa1334080:three_prime_UTR
CATCAGAGATTGTATCGAGA+AGG 0.603166 8_4:+54395829 Msa1334080:CDS
ACCGCCGAAGAAGATGGCGG+AGG 0.603237 8_4:-54391206 None:intergenic
CACTGTCTGTCACCACCTCA+AGG 0.607523 8_4:+54391271 Msa1334080:CDS
AAAAGCCACAAACCTTGTCA+AGG 0.608622 8_4:-54392797 None:intergenic
TAAAGGCACAACAAAAGCAA+TGG 0.611125 8_4:-54396195 None:intergenic
AACTTGTTTCGATCTAGACC+GGG 0.615123 8_4:-54391762 None:intergenic
GCTTTGTGCAGAGCAAGGGA+AGG 0.616962 8_4:+54394362 Msa1334080:intron
GATGGCGGCAAACGGAGAAG+GGG 0.620600 8_4:-54391240 None:intergenic
GAGTTGAATCAGAATGACAA+GGG 0.622687 8_4:-54395867 None:intergenic
ATGGAAGTGGAAAGGGCGAG+AGG 0.624902 8_4:+54395916 Msa1334080:three_prime_UTR
TTCTGCAATGTCATGAACAA+TGG 0.625875 8_4:-54391884 None:intergenic
ATTTGTCAAGGACCTTGACA+AGG 0.627652 8_4:+54392785 Msa1334080:CDS
GTACTTTCATGAGTTCCATG+TGG 0.628802 8_4:+54396137 Msa1334080:three_prime_UTR
GTAAGTAAAACCAACCCACA+TGG 0.629154 8_4:-54396152 None:intergenic
TGGAAGTGGAAAGGGCGAGA+GGG 0.629289 8_4:+54395917 Msa1334080:three_prime_UTR
AGAAAACAAAGAGAGCAGGA+TGG 0.631422 8_4:+54391655 Msa1334080:intron
GGAGTAGGAGAAGGATCGAG+AGG 0.645575 8_4:+54392614 Msa1334080:CDS
AGAGTTGAATCAGAATGACA+AGG 0.654332 8_4:-54395868 None:intergenic
GACAGTGAGGAACTCGATGG+CGG 0.666945 8_4:-54391255 None:intergenic
TGTTGTAAATTGGGAATCCG+TGG 0.672452 8_4:+54395984 Msa1334080:three_prime_UTR
AATGCAGACGTACCTTGAGG+TGG 0.674460 8_4:-54391283 None:intergenic
TGATGATGCTGAAGGTGCAG+TGG 0.680499 8_4:-54391144 None:intergenic
TTAAGAGATCTCCGTCACCA+CGG 0.699596 8_4:-54396001 None:intergenic
TGAGGTGGTGACAGACAGTG+AGG 0.702841 8_4:-54391268 None:intergenic
AGTTGAATCAGAATGACAAG+GGG 0.706767 8_4:-54395866 None:intergenic
TGAACATGGCTCCACCAAAG+GGG 0.707225 8_4:-54396288 None:intergenic
ACAGACAGTGAGGAACTCGA+TGG 0.711999 8_4:-54391258 None:intergenic
GACGGCGATGATGATGCTGA+AGG 0.717197 8_4:-54391152 None:intergenic
GGAACCGCCGAAGAAGATGG+CGG 0.718597 8_4:-54391209 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAATATAGTTTTAATTAAT+CGG + chr8_4:54391457-54391476 Msa1334080:intron 10.0%
!!! TTTTTCATTTATAATTGTAA+CGG + chr8_4:54394227-54394246 Msa1334080:intron 10.0%
!! CATAGAAATAAATTTATAAA+CGG - chr8_4:54394292-54394311 None:intergenic 10.0%
!!! AACTCATTTTTTTTAAAAAA+TGG + chr8_4:54394949-54394968 Msa1334080:intron 10.0%
!!! TTTTAAAAAATGGATTTTTA+TGG + chr8_4:54394959-54394978 Msa1334080:intron 10.0%
!!! TTTTTAACAAAAACAGAATA+GGG - chr8_4:54392363-54392382 None:intergenic 15.0%
!!! TTTTTTAACAAAAACAGAAT+AGG - chr8_4:54392364-54392383 None:intergenic 15.0%
!! TGGAACAAAAATTATTATTA+TGG - chr8_4:54393236-54393255 None:intergenic 15.0%
!!! ACTGTTATTTTTTTAATCAA+TGG + chr8_4:54394587-54394606 Msa1334080:intron 15.0%
!!! GAAAAAAGTGATTTTTTTAA+AGG - chr8_4:54394784-54394803 None:intergenic 15.0%
!! ATAAAAAAAACTCATCAAAA+TGG - chr8_4:54395130-54395149 None:intergenic 15.0%
!!! TTACAACTATTTTAATTGTT+AGG - chr8_4:54395727-54395746 None:intergenic 15.0%
!!! TAATAAGGAGTAAATTTTGA+AGG - chr8_4:54391314-54391333 None:intergenic 20.0%
!! GTTATCAGTTAAAAGAAAAA+AGG - chr8_4:54391798-54391817 None:intergenic 20.0%
!!! TTGTTAAAAAAGCAATTTTC+AGG + chr8_4:54392373-54392392 Msa1334080:intron 20.0%
!!! TAAATTGATTTTGCTTACTT+TGG + chr8_4:54392481-54392500 Msa1334080:intron 20.0%
!!! TTTGTTTAATAGCTTTGATT+GGG + chr8_4:54392507-54392526 Msa1334080:intron 20.0%
!! CTGTTTATTAAAAAGATCAA+TGG + chr8_4:54392941-54392960 Msa1334080:intron 20.0%
!!! TCTTATTTTATAAGTTTAGG+AGG - chr8_4:54393019-54393038 None:intergenic 20.0%
!!! CTCTCTTATTTTATAAGTTT+AGG - chr8_4:54393022-54393041 None:intergenic 20.0%
!!! ATAATGATAATGCTACATTT+TGG + chr8_4:54393155-54393174 Msa1334080:intron 20.0%
!!! TAATAATTTTTGTTCCATAC+AGG + chr8_4:54393239-54393258 Msa1334080:intron 20.0%
!! TATGCAAATAATATTGAACT+TGG + chr8_4:54393449-54393468 Msa1334080:intron 20.0%
!! GAATCATATTACAATAGTAA+TGG + chr8_4:54393563-54393582 Msa1334080:intron 20.0%
!!! ATGTTTTAGAACTGTTTTAT+AGG + chr8_4:54393634-54393653 Msa1334080:intron 20.0%
!!! CATTTTTAAATGTTCTACTT+AGG - chr8_4:54393730-54393749 None:intergenic 20.0%
!! TCACAAAAGTTGTTTAAAAA+TGG - chr8_4:54393833-54393852 None:intergenic 20.0%
!!! CACTAAAAGTTGTTTAAAAT+TGG + chr8_4:54393947-54393966 Msa1334080:intron 20.0%
!! AACAAGTTCAATCAAATAAA+GGG - chr8_4:54394078-54394097 None:intergenic 20.0%
!! AATGAAAAAGAACTCATATT+TGG - chr8_4:54394216-54394235 None:intergenic 20.0%
!! AATAAATTTATAAACGGAGA+AGG - chr8_4:54394286-54394305 None:intergenic 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG + chr8_4:54394802-54394821 Msa1334080:intron 20.0%
!!! ATCTATTTTGTTTAACAACA+AGG + chr8_4:54394904-54394923 Msa1334080:intron 20.0%
!!! AAAGTTTGAGAGTATAAAAA+CGG - chr8_4:54395494-54395513 None:intergenic 20.0%
!! AAAAATCATAAACCTGATTA+TGG + chr8_4:54395633-54395652 Msa1334080:intron 20.0%
!! TAGTTGTAAAATTTGATCAA+TGG + chr8_4:54395738-54395757 Msa1334080:intron 20.0%
! TTTAGTAAGCATGTCATTAA+AGG - chr8_4:54391415-54391434 None:intergenic 25.0%
! TAATGACATGCTTACTAAAA+TGG + chr8_4:54391416-54391435 Msa1334080:intron 25.0%
! TCAAAGTAGAACAATTCATT+AGG - chr8_4:54391553-54391572 None:intergenic 25.0%
! GTTAAAAGAAAAAAGGAAAG+TGG - chr8_4:54391791-54391810 None:intergenic 25.0%
!!! TGGTTTGTTTGTTAATTTTC+AGG + chr8_4:54391848-54391867 Msa1334080:intron 25.0%
!!! AATTTTCAGGTGCATAAAAA+TGG + chr8_4:54391861-54391880 Msa1334080:intron 25.0%
! GTAAATATTTGTCTAAGCTT+CGG + chr8_4:54392084-54392103 Msa1334080:intron 25.0%
! TACTCCTATCATTATAATAC+TGG + chr8_4:54392316-54392335 Msa1334080:intron 25.0%
! ACTCCTATCATTATAATACT+GGG + chr8_4:54392317-54392336 Msa1334080:intron 25.0%
! ATCAATTTATAGTTCCAAGT+AGG - chr8_4:54392470-54392489 None:intergenic 25.0%
!!! CTTTGTTTAATAGCTTTGAT+TGG + chr8_4:54392506-54392525 Msa1334080:intron 25.0%
!!! TTGTTTAATAGCTTTGATTG+GGG + chr8_4:54392508-54392527 Msa1334080:intron 25.0%
! GAGTATATGTGCAAAATAAT+TGG + chr8_4:54392593-54392612 Msa1334080:CDS 25.0%
!! TAATTGAATTTTCACACTGA+AGG + chr8_4:54392705-54392724 Msa1334080:intron 25.0%
!! TTTTATAAGTTTAGGAGGAA+AGG - chr8_4:54393014-54393033 None:intergenic 25.0%
! ACAATTCAAATGGTTTGATA+AGG - chr8_4:54393365-54393384 None:intergenic 25.0%
! AGATTGACAAACAATTCAAA+TGG - chr8_4:54393375-54393394 None:intergenic 25.0%
!!! TTTACCTGTTTGTTATCTAT+AGG + chr8_4:54393526-54393545 Msa1334080:intron 25.0%
! AAATTCTCAATAATGTGAAG+AGG - chr8_4:54393989-54394008 None:intergenic 25.0%
! GAACAAGTTCAATCAAATAA+AGG - chr8_4:54394079-54394098 None:intergenic 25.0%
! ATTTCTATGCGATGTTTATT+TGG + chr8_4:54394303-54394322 Msa1334080:intron 25.0%
!!! TTCTGAAATTTGTTTTCTCA+TGG + chr8_4:54394340-54394359 Msa1334080:intron 25.0%
! TTCAGTAGTGTTATAAACAA+AGG - chr8_4:54394648-54394667 None:intergenic 25.0%
!! CCTAATAGCTTTTCATTTTA+GGG - chr8_4:54394868-54394887 None:intergenic 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG - chr8_4:54394869-54394888 None:intergenic 25.0%
!!! CTTATTTATTTCTTTTACCC+TGG - chr8_4:54395385-54395404 None:intergenic 25.0%
! TGTTTATACCCCTAAAATTA+TGG - chr8_4:54395450-54395469 None:intergenic 25.0%
! ATACTCTCAAACTTTAGTAA+TGG + chr8_4:54395499-54395518 Msa1334080:intron 25.0%
!!! TTGAGATACAGAGTTTTAAA+AGG - chr8_4:54395944-54395963 None:intergenic 25.0%
! TTAAAACTCTGTATCTCAAT+TGG + chr8_4:54395945-54395964 Msa1334080:three_prime_UTR 25.0%
TCGAAACGATTATTGTAAGT+TGG + chr8_4:54391011-54391030 Msa1334080:five_prime_UTR 30.0%
TGAAATGAGAATATCACACT+CGG - chr8_4:54391060-54391079 None:intergenic 30.0%
!! AGAAAATTTCTGGTGAAAGT+CGG - chr8_4:54391119-54391138 None:intergenic 30.0%
! TTTCACCAGAAATTTTCTCA+TGG + chr8_4:54391121-54391140 Msa1334080:exon 30.0%
TCCTTATTATCTCATAAAGC+TGG + chr8_4:54391325-54391344 Msa1334080:intron 30.0%
! TCCAGCTTTATGAGATAATA+AGG - chr8_4:54391329-54391348 None:intergenic 30.0%
CATGCTTACTAAAATGGTTT+AGG + chr8_4:54391422-54391441 Msa1334080:intron 30.0%
!!! GATTGTGATGTAGTTTTGTT+AGG + chr8_4:54391508-54391527 Msa1334080:intron 30.0%
AAATAGAAAACAAAGAGAGC+AGG + chr8_4:54391651-54391670 Msa1334080:intron 30.0%
TAACAGCTAAATGAGACTTT+AGG + chr8_4:54391814-54391833 Msa1334080:intron 30.0%
! GCTCATAATTTGTCTATGTT+TGG + chr8_4:54391920-54391939 Msa1334080:intron 30.0%
TTGTCTATGTTTGGTAAAAC+TGG + chr8_4:54391929-54391948 Msa1334080:intron 30.0%
TTTGGTGGAATGTAAATCAA+CGG + chr8_4:54392027-54392046 Msa1334080:intron 30.0%
GTTTCAGTTCATTTCTGTTA+GGG - chr8_4:54392177-54392196 None:intergenic 30.0%
AGTTTCAGTTCATTTCTGTT+AGG - chr8_4:54392178-54392197 None:intergenic 30.0%
!! CAATTTTCAGGCTTTCAAAA+TGG + chr8_4:54392385-54392404 Msa1334080:intron 30.0%
ATGTGCAAAATAATTGGAGT+AGG + chr8_4:54392599-54392618 Msa1334080:CDS 30.0%
AAAATAATTGGAGTAGGAGA+AGG + chr8_4:54392605-54392624 Msa1334080:CDS 30.0%
GAACTAGAGAAAGACATATT+AGG - chr8_4:54392825-54392844 None:intergenic 30.0%
GTTTACATGGCAAAAATTCA+AGG - chr8_4:54393196-54393215 None:intergenic 30.0%
AGATTAACTAGCAGTTTACA+TGG - chr8_4:54393209-54393228 None:intergenic 30.0%
ATGTAAACTGCTAGTTAATC+TGG + chr8_4:54393208-54393227 Msa1334080:intron 30.0%
AAGTATCATTTCTACCTGTA+TGG - chr8_4:54393256-54393275 None:intergenic 30.0%
! CTTGGTACATTTTACACTTT+TGG + chr8_4:54393467-54393486 Msa1334080:intron 30.0%
! GAACTGTTTTATAGGTAGTT+TGG + chr8_4:54393642-54393661 Msa1334080:intron 30.0%
!! ACTTAGGTTTTATCAATGCT+TGG - chr8_4:54393714-54393733 None:intergenic 30.0%
CTCATTGGACAATAACATTA+GGG - chr8_4:54393908-54393927 None:intergenic 30.0%
TCTCATTGGACAATAACATT+AGG - chr8_4:54393909-54393928 None:intergenic 30.0%
AATGTTATTGTCCAATGAGA+AGG + chr8_4:54393909-54393928 Msa1334080:intron 30.0%
ATGTTATTGTCCAATGAGAA+GGG + chr8_4:54393910-54393929 Msa1334080:intron 30.0%
! TTTGATTGAACTTGTTCCAT+AGG + chr8_4:54394082-54394101 Msa1334080:intron 30.0%
ACTTGTTCCATAGGAATAAA+AGG + chr8_4:54394091-54394110 Msa1334080:intron 30.0%
CTTGTTCCATAGGAATAAAA+GGG + chr8_4:54394092-54394111 Msa1334080:intron 30.0%
! GAATATCCCTTTTATTCCTA+TGG - chr8_4:54394101-54394120 None:intergenic 30.0%
AGTTATCGCAGGAATAAAAA+TGG - chr8_4:54394433-54394452 None:intergenic 30.0%
ATCATTGATCAGAAAACCAA+TGG + chr8_4:54394505-54394524 Msa1334080:intron 30.0%
CCCTAAAATGAAAAGCTATT+AGG + chr8_4:54394865-54394884 Msa1334080:intron 30.0%
AACAAACACCATCAGATATA+GGG - chr8_4:54395092-54395111 None:intergenic 30.0%
TAACAAACACCATCAGATAT+AGG - chr8_4:54395093-54395112 None:intergenic 30.0%
!!! ATGAGTTTTTTTTATGCGTC+TGG + chr8_4:54395135-54395154 Msa1334080:intron 30.0%
! TCATTTGGAATCTCTTGATT+TGG + chr8_4:54395229-54395248 Msa1334080:intron 30.0%
AAACAGCTGAACAAAATATG+TGG - chr8_4:54395279-54395298 None:intergenic 30.0%
ATAAATAAGTACACCCATTC+TGG + chr8_4:54395396-54395415 Msa1334080:intron 30.0%
AATTATGGTGATAGAGGAAA+TGG - chr8_4:54395435-54395454 None:intergenic 30.0%
! TCCTCTATCACCATAATTTT+AGG + chr8_4:54395437-54395456 Msa1334080:intron 30.0%
! CCTCTATCACCATAATTTTA+GGG + chr8_4:54395438-54395457 Msa1334080:intron 30.0%
! CTCTATCACCATAATTTTAG+GGG + chr8_4:54395439-54395458 Msa1334080:intron 30.0%
TGTGGGATTAGAAATATTAC+AGG + chr8_4:54395574-54395593 Msa1334080:intron 30.0%
GTGGGATTAGAAATATTACA+GGG + chr8_4:54395575-54395594 Msa1334080:intron 30.0%
! AGAACTCTTTTATCAACAGA+TGG - chr8_4:54395688-54395707 None:intergenic 30.0%
! ATCTGTTGATAAAAGAGTTC+TGG + chr8_4:54395687-54395706 Msa1334080:intron 30.0%
TGATCAATGGAAGTTCTTAT+TGG + chr8_4:54395751-54395770 Msa1334080:intron 30.0%
TAGCATGTAGTGTTGTAAAT+TGG + chr8_4:54395974-54395993 Msa1334080:three_prime_UTR 30.0%
AGCATGTAGTGTTGTAAATT+GGG + chr8_4:54395975-54395994 Msa1334080:three_prime_UTR 30.0%
TATTCATTTGACCTCATTCA+TGG + chr8_4:54396113-54396132 Msa1334080:three_prime_UTR 30.0%
ATTCATTTGACCTCATTCAT+GGG + chr8_4:54396114-54396133 Msa1334080:three_prime_UTR 30.0%
TAACGACCAAAAACATCTAA+AGG - chr8_4:54396215-54396234 None:intergenic 30.0%
ATCTTCATTAGGTTCGTGTA+AGG - chr8_4:54391487-54391506 None:intergenic 35.0%
CATCACAATCGATCTTCATT+AGG - chr8_4:54391498-54391517 None:intergenic 35.0%
CATGTATCGTATGAGTTTGA+TGG + chr8_4:54391719-54391738 Msa1334080:CDS 35.0%
!! TAACTTGTTTCGATCTAGAC+CGG - chr8_4:54391766-54391785 None:intergenic 35.0%
!!! GACTTTAGGTTTTCTGAAAC+TGG + chr8_4:54391828-54391847 Msa1334080:intron 35.0%
TTCTGCAATGTCATGAACAA+TGG - chr8_4:54391887-54391906 None:intergenic 35.0%
ATTGTTCATGACATTGCAGA+AGG + chr8_4:54391886-54391905 Msa1334080:CDS 35.0%
AAGTTTAGATGAAGTCAGTC+AGG + chr8_4:54391994-54392013 Msa1334080:intron 35.0%
CAGTCAGGTGAGTAATAATT+TGG + chr8_4:54392009-54392028 Msa1334080:intron 35.0%
TCAGGTGAGTAATAATTTGG+TGG + chr8_4:54392012-54392031 Msa1334080:intron 35.0%
TTGGTGGAATGTAAATCAAC+GGG + chr8_4:54392028-54392047 Msa1334080:intron 35.0%
CTAATAGGGGCTAATACAAA+AGG + chr8_4:54392234-54392253 Msa1334080:intron 35.0%
ACGCCCAGTATTATAATGAT+AGG - chr8_4:54392323-54392342 None:intergenic 35.0%
! AATGGCAGAAGCTTTAACAT+AGG + chr8_4:54392403-54392422 Msa1334080:intron 35.0%
AACTCATCGACAAAATGACA+AGG - chr8_4:54392645-54392664 None:intergenic 35.0%
TTGAGAAAACTCATGTCTGT+TGG + chr8_4:54392679-54392698 Msa1334080:intron 35.0%
! GAATTTTCACACTGAAGGAA+AGG + chr8_4:54392710-54392729 Msa1334080:intron 35.0%
GAAAGGAAATTACTGAGTTG+TGG + chr8_4:54392727-54392746 Msa1334080:CDS 35.0%
!!! AGGTTTTGGAGGAAAATGAA+AGG + chr8_4:54392884-54392903 Msa1334080:intron 35.0%
TCCATTCAAACATGTTCCAA+GGG + chr8_4:54393051-54393070 Msa1334080:intron 35.0%
ATGTTCCAAGGGATTAAAAC+TGG + chr8_4:54393062-54393081 Msa1334080:intron 35.0%
CTAATTCAACACCCATTGAT+AGG - chr8_4:54393121-54393140 None:intergenic 35.0%
!! GATAATGCTACATTTTGGTC+TGG + chr8_4:54393160-54393179 Msa1334080:intron 35.0%
GTAGCCTATAGATAACAAAC+AGG - chr8_4:54393533-54393552 None:intergenic 35.0%
AGACAAGCAGTTCTATCAAA+TGG - chr8_4:54393680-54393699 None:intergenic 35.0%
! AACGGAAAAGAGTACAATGA+AGG + chr8_4:54394245-54394264 Msa1334080:intron 35.0%
! ACGGAAAAGAGTACAATGAA+GGG + chr8_4:54394246-54394265 Msa1334080:intron 35.0%
! GAATTTTTCTGTTCAACTGC+TGG + chr8_4:54394393-54394412 Msa1334080:CDS 35.0%
AAACATGTGTAAGTTATCGC+AGG - chr8_4:54394444-54394463 None:intergenic 35.0%
GTTGTTGAAATCTCAACCAT+TGG - chr8_4:54394524-54394543 None:intergenic 35.0%
AAAGGATTGATGCACTTTAG+AGG - chr8_4:54394630-54394649 None:intergenic 35.0%
! TATAATCTGAAGCTGAGAAG+TGG + chr8_4:54394702-54394721 Msa1334080:intron 35.0%
!!! TCTTTTTTGTTGGAGATTGC+TGG + chr8_4:54395160-54395179 Msa1334080:intron 35.0%
ATGACATTCCATCTCATAGT+AGG - chr8_4:54395213-54395232 None:intergenic 35.0%
CTATGAGATGGAATGTCATT+TGG + chr8_4:54395214-54395233 Msa1334080:intron 35.0%
AGATCATCCATTTCCAGAAT+GGG - chr8_4:54395412-54395431 None:intergenic 35.0%
CCCTAAAATTATGGTGATAG+AGG - chr8_4:54395441-54395460 None:intergenic 35.0%
GATTAGAAATATTACAGGGC+AGG + chr8_4:54395579-54395598 Msa1334080:intron 35.0%
CTCTTTGATCAACCATAATC+AGG - chr8_4:54395648-54395667 None:intergenic 35.0%
TCAATGGAAGTTCTTATTGG+AGG + chr8_4:54395754-54395773 Msa1334080:intron 35.0%
! AGGAAAATTTGACGTTTTGC+AGG + chr8_4:54395774-54395793 Msa1334080:intron 35.0%
! GGAAAATTTGACGTTTTGCA+GGG + chr8_4:54395775-54395794 Msa1334080:intron 35.0%
AGTTGAATCAGAATGACAAG+GGG - chr8_4:54395869-54395888 None:intergenic 35.0%
GAGTTGAATCAGAATGACAA+GGG - chr8_4:54395870-54395889 None:intergenic 35.0%
AGAGTTGAATCAGAATGACA+AGG - chr8_4:54395871-54395890 None:intergenic 35.0%
TTGTCATTCTGATTCAACTC+TGG + chr8_4:54395870-54395889 Msa1334080:three_prime_UTR 35.0%
!! TGATTCAACTCTGGAGTTTA+TGG + chr8_4:54395879-54395898 Msa1334080:three_prime_UTR 35.0%
GTACAGATCACCAAAATAGT+AGG + chr8_4:54396041-54396060 Msa1334080:three_prime_UTR 35.0%
! TTCATGCACACCTACTATTT+TGG - chr8_4:54396054-54396073 None:intergenic 35.0%
TTCATTTGACCTCATTCATG+GGG + chr8_4:54396115-54396134 Msa1334080:three_prime_UTR 35.0%
TACTTTCATGAGTTCCATGT+GGG + chr8_4:54396138-54396157 Msa1334080:three_prime_UTR 35.0%
! GGTTTTACTTACATGGAAGT+AGG + chr8_4:54396163-54396182 Msa1334080:three_prime_UTR 35.0%
! TAAAGGCACAACAAAAGCAA+TGG - chr8_4:54396198-54396217 None:intergenic 35.0%
! GTTGTGCCTTTAGATGTTTT+TGG + chr8_4:54396206-54396225 Msa1334080:three_prime_UTR 35.0%
TTCCATTAAAAGTTCCCCTT+TGG + chr8_4:54396274-54396293 Msa1334080:three_prime_UTR 35.0%
AGTGGCCATGAGAAAATTTC+TGG - chr8_4:54391129-54391148 None:intergenic 40.0%
ATTAATGCAGACGTACCTTG+AGG - chr8_4:54391289-54391308 None:intergenic 40.0%
AGAAAACAAAGAGAGCAGGA+TGG + chr8_4:54391655-54391674 Msa1334080:intron 40.0%
GAAAACAAAGAGAGCAGGAT+GGG + chr8_4:54391656-54391675 Msa1334080:intron 40.0%
ATGGGTGAGAAGAGATGTTA+AGG + chr8_4:54391674-54391693 Msa1334080:CDS 40.0%
ATGTGATCAGCTACAGATTC+TGG - chr8_4:54391702-54391721 None:intergenic 40.0%
! AACTTGTTTCGATCTAGACC+GGG - chr8_4:54391765-54391784 None:intergenic 40.0%
GAATGTAAATCAACGGGATC+TGG + chr8_4:54392034-54392053 Msa1334080:intron 40.0%
AACTTTCAGTTATGCCTAGC+TGG + chr8_4:54392206-54392225 Msa1334080:intron 40.0%
CCTAGCTGGCATAACTAATA+GGG + chr8_4:54392220-54392239 Msa1334080:intron 40.0%
CTAGCTGGCATAACTAATAG+GGG + chr8_4:54392221-54392240 Msa1334080:intron 40.0%
AGTGTTAAGTGACAGAGTCT+AGG + chr8_4:54392278-54392297 Msa1334080:intron 40.0%
GTGTTAAGTGACAGAGTCTA+GGG + chr8_4:54392279-54392298 Msa1334080:intron 40.0%
! TAGTTCCAAGTAGGAAGCAT+GGG - chr8_4:54392461-54392480 None:intergenic 40.0%
ATAGTTCCAAGTAGGAAGCA+TGG - chr8_4:54392462-54392481 None:intergenic 40.0%
!!! TGCTTTTGAAACTCCATCCA+GGG - chr8_4:54392543-54392562 None:intergenic 40.0%
GGAAATTACTGAGTTGTGGA+TGG + chr8_4:54392731-54392750 Msa1334080:CDS 40.0%
TCCAGAAGCGAAATTTGTCA+AGG + chr8_4:54392773-54392792 Msa1334080:CDS 40.0%
TCCTTGACAAATTTCGCTTC+TGG - chr8_4:54392777-54392796 None:intergenic 40.0%
ATTTGTCAAGGACCTTGACA+AGG + chr8_4:54392785-54392804 Msa1334080:CDS 40.0%
AAAAGCCACAAACCTTGTCA+AGG - chr8_4:54392800-54392819 None:intergenic 40.0%
! TTGACAAGGTTTGTGGCTTT+TGG + chr8_4:54392799-54392818 Msa1334080:intron 40.0%
CTTGGAACATGTTTGAATGG+AGG - chr8_4:54393052-54393071 None:intergenic 40.0%
CTCCATTCAAACATGTTCCA+AGG + chr8_4:54393050-54393069 Msa1334080:intron 40.0%
TCCCTTGGAACATGTTTGAA+TGG - chr8_4:54393055-54393074 None:intergenic 40.0%
TTCCAAGGGATTAAAACTGG+AGG + chr8_4:54393065-54393084 Msa1334080:intron 40.0%
TCCAAGGGATTAAAACTGGA+GGG + chr8_4:54393066-54393085 Msa1334080:intron 40.0%
AGAAATGATACTTCAAGCGC+TGG + chr8_4:54393263-54393282 Msa1334080:CDS 40.0%
TGGATTATGAAGATGGTGAG+TGG + chr8_4:54393283-54393302 Msa1334080:intron 40.0%
TGCGTATAATTGAGACCAGA+GGG - chr8_4:54393769-54393788 None:intergenic 40.0%
TTGCGTATAATTGAGACCAG+AGG - chr8_4:54393770-54393789 None:intergenic 40.0%
TTATTGTCCAATGAGAAGGG+AGG + chr8_4:54393913-54393932 Msa1334080:intron 40.0%
TCGCAGGAATAAAAATGGTG+CGG - chr8_4:54394428-54394447 None:intergenic 40.0%
!! CAAAAGCACCCTATATCTGA+TGG + chr8_4:54395081-54395100 Msa1334080:intron 40.0%
!!! GCGTCTGGAATCTTTTTTGT+TGG + chr8_4:54395150-54395169 Msa1334080:intron 40.0%
! TGATTTGGAGATTGATCCTG+CGG + chr8_4:54395244-54395263 Msa1334080:intron 40.0%
TATGTGGAAGATAAAACCGC+AGG - chr8_4:54395263-54395282 None:intergenic 40.0%
! ATGAACAGTCATTTGTTGCC+AGG + chr8_4:54395364-54395383 Msa1334080:intron 40.0%
! TGAACAGTCATTTGTTGCCA+GGG + chr8_4:54395365-54395384 Msa1334080:intron 40.0%
! AAGTACACCCATTCTGGAAA+TGG + chr8_4:54395402-54395421 Msa1334080:intron 40.0%
GAGATCATCCATTTCCAGAA+TGG - chr8_4:54395413-54395432 None:intergenic 40.0%
AGTGAGTGGCAATAGAAGAA+TGG - chr8_4:54395526-54395545 None:intergenic 40.0%
ATCAACAGATGGCAATCATC+TGG - chr8_4:54395677-54395696 None:intergenic 40.0%
AAGCTTTGCCAACTTCAGTT+TGG - chr8_4:54395806-54395825 None:intergenic 40.0%
AAACTGAAGTTGGCAAAGCT+TGG + chr8_4:54395805-54395824 Msa1334080:CDS 40.0%
AACTGAAGTTGGCAAAGCTT+GGG + chr8_4:54395806-54395825 Msa1334080:CDS 40.0%
CATCAGAGATTGTATCGAGA+AGG + chr8_4:54395829-54395848 Msa1334080:CDS 40.0%
TCAGAATGACAAGGGGATTT+AGG - chr8_4:54395862-54395881 None:intergenic 40.0%
TTTCCACTTCCATCTTGAGA+GGG - chr8_4:54395909-54395928 None:intergenic 40.0%
TCTCAAGATGGAAGTGGAAA+GGG + chr8_4:54395909-54395928 Msa1334080:three_prime_UTR 40.0%
TGTTGTAAATTGGGAATCCG+TGG + chr8_4:54395984-54396003 Msa1334080:three_prime_UTR 40.0%
GGAGATCTCTTAACACTGTA+AGG + chr8_4:54396011-54396030 Msa1334080:three_prime_UTR 40.0%
!! ATGAAAGTACCCCATGAATG+AGG - chr8_4:54396127-54396146 None:intergenic 40.0%
GTACTTTCATGAGTTCCATG+TGG + chr8_4:54396137-54396156 Msa1334080:three_prime_UTR 40.0%
GTAAGTAAAACCAACCCACA+TGG - chr8_4:54396155-54396174 None:intergenic 40.0%
!!! GTGGGTTGGTTTTACTTACA+TGG + chr8_4:54396156-54396175 Msa1334080:three_prime_UTR 40.0%
! CACCAAAGGGGAACTTTTAA+TGG - chr8_4:54396279-54396298 None:intergenic 40.0%
CATTAAAAGTTCCCCTTTGG+TGG + chr8_4:54396277-54396296 Msa1334080:three_prime_UTR 40.0%
TCTGTGTGTGTAAGGAGAGA+TGG - chr8_4:54391086-54391105 None:intergenic 45.0%
TGTGTGTGTCTGTGTGTGTA+AGG - chr8_4:54391094-54391113 None:intergenic 45.0%
GCCTAGCTGGCATAACTAAT+AGG + chr8_4:54392219-54392238 Msa1334080:intron 45.0%
CCCTATTAGTTATGCCAGCT+AGG - chr8_4:54392223-54392242 None:intergenic 45.0%
TAAGTGACAGAGTCTAGGGA+AGG + chr8_4:54392283-54392302 Msa1334080:intron 45.0%
!!! TTTTGAAACTCCATCCAGGG+GGG - chr8_4:54392540-54392559 None:intergenic 45.0%
!!! CTTTTGAAACTCCATCCAGG+GGG - chr8_4:54392541-54392560 None:intergenic 45.0%
!!! GCTTTTGAAACTCCATCCAG+GGG - chr8_4:54392542-54392561 None:intergenic 45.0%
!!! CTGCTTTTGAAACTCCATCC+AGG - chr8_4:54392544-54392563 None:intergenic 45.0%
AAGGACCTTGACAAGGTTTG+TGG + chr8_4:54392792-54392811 Msa1334080:intron 45.0%
!!! CACATCTGCGCTTTAGCTTT+TGG + chr8_4:54392844-54392863 Msa1334080:intron 45.0%
!! TTAGCTTTTGGCTGGTGGTT+TGG + chr8_4:54392856-54392875 Msa1334080:intron 45.0%
!! GTGGTTTGGATGGTAGGTTT+TGG + chr8_4:54392870-54392889 Msa1334080:intron 45.0%
!! GTTTGGATGGTAGGTTTTGG+AGG + chr8_4:54392873-54392892 Msa1334080:intron 45.0%
GATTAAAACTGGAGGGCCTA+GGG + chr8_4:54393073-54393092 Msa1334080:intron 45.0%
TGGACAGGATGTCCTATCAA+TGG + chr8_4:54393106-54393125 Msa1334080:intron 45.0%
GGACAGGATGTCCTATCAAT+GGG + chr8_4:54393107-54393126 Msa1334080:intron 45.0%
!! CAAGCGCTGGATTATGAAGA+TGG + chr8_4:54393276-54393295 Msa1334080:CDS 45.0%
GCGTATAATTGAGACCAGAG+GGG - chr8_4:54393768-54393787 None:intergenic 45.0%
! CCTTTTTCCTCCCTTCTCAT+TGG - chr8_4:54393923-54393942 None:intergenic 45.0%
CCAATGAGAAGGGAGGAAAA+AGG + chr8_4:54393920-54393939 Msa1334080:intron 45.0%
AGAAGTGGATCCTAGGCTAT+GGG + chr8_4:54394717-54394736 Msa1334080:intron 45.0%
ACCTGCTTCCTACTATGAGA+TGG + chr8_4:54395202-54395221 Msa1334080:intron 45.0%
TCCATCTCATAGTAGGAAGC+AGG - chr8_4:54395206-54395225 None:intergenic 45.0%
!! TGAGCACTGAAGACAACATG+AGG + chr8_4:54395305-54395324 Msa1334080:intron 45.0%
!! GAGCACTGAAGACAACATGA+GGG + chr8_4:54395306-54395325 Msa1334080:intron 45.0%
! GCAGATATGAGTAGGAGTGT+GGG + chr8_4:54395331-54395350 Msa1334080:intron 45.0%
CACTCACTGATGAAACACGA+GGG + chr8_4:54395538-54395557 Msa1334080:intron 45.0%
TGATGAAACACGAGGGAAGT+TGG + chr8_4:54395545-54395564 Msa1334080:intron 45.0%
GATGAAACACGAGGGAAGTT+GGG + chr8_4:54395546-54395565 Msa1334080:intron 45.0%
ATGAAACACGAGGGAAGTTG+GGG + chr8_4:54395547-54395566 Msa1334080:intron 45.0%
GGGAAGTTCCAAACTGAAGT+TGG + chr8_4:54395795-54395814 Msa1334080:intron 45.0%
TATGGATCTCCCTCTCAAGA+TGG + chr8_4:54395897-54395916 Msa1334080:three_prime_UTR 45.0%
CTTTCCACTTCCATCTTGAG+AGG - chr8_4:54395910-54395929 None:intergenic 45.0%
CTCTCAAGATGGAAGTGGAA+AGG + chr8_4:54395908-54395927 Msa1334080:three_prime_UTR 45.0%
AAATTGGGAATCCGTGGTGA+CGG + chr8_4:54395990-54396009 Msa1334080:three_prime_UTR 45.0%
TTAAGAGATCTCCGTCACCA+CGG - chr8_4:54396004-54396023 None:intergenic 45.0%
TTCATGAGTTCCATGTGGGT+TGG + chr8_4:54396142-54396161 Msa1334080:three_prime_UTR 45.0%
TTGAACATGGCTCCACCAAA+GGG - chr8_4:54396292-54396311 None:intergenic 45.0%
! TGATGATGCTGAAGGTGCAG+TGG - chr8_4:54391147-54391166 None:intergenic 50.0%
AGCATCATCATCGCCGTCAA+CGG + chr8_4:54391157-54391176 Msa1334080:CDS 50.0%
ACAGACAGTGAGGAACTCGA+TGG - chr8_4:54391261-54391280 None:intergenic 50.0%
AATGCAGACGTACCTTGAGG+TGG - chr8_4:54391286-54391305 None:intergenic 50.0%
CTGATTGCACCAGATGTTCC+CGG + chr8_4:54391744-54391763 Msa1334080:CDS 50.0%
TCACACCCATGCTTCCTACT+TGG + chr8_4:54392453-54392472 Msa1334080:intron 50.0%
!!! TCTGCGCTTTAGCTTTTGGC+TGG + chr8_4:54392848-54392867 Msa1334080:intron 50.0%
!! CTTTTGGCTGGTGGTTTGGA+TGG + chr8_4:54392860-54392879 Msa1334080:intron 50.0%
!! GCCCTCCAGTTTTAATCCCT+TGG - chr8_4:54393070-54393089 None:intergenic 50.0%
GGATTAAAACTGGAGGGCCT+AGG + chr8_4:54393072-54393091 Msa1334080:intron 50.0%
!! TCATGGCTTTGTGCAGAGCA+AGG + chr8_4:54394357-54394376 Msa1334080:intron 50.0%
!! CATGGCTTTGTGCAGAGCAA+GGG + chr8_4:54394358-54394377 Msa1334080:intron 50.0%
TGCAGAGCAAGGGAAGGATT+TGG + chr8_4:54394368-54394387 Msa1334080:intron 50.0%
GAAGCTGAGAAGTGGATCCT+AGG + chr8_4:54394710-54394729 Msa1334080:intron 50.0%
GAGAAGTGGATCCTAGGCTA+TGG + chr8_4:54394716-54394735 Msa1334080:intron 50.0%
AACAAACGCACCCATAGCCT+AGG - chr8_4:54394730-54394749 None:intergenic 50.0%
CACTGAAGACAACATGAGGG+TGG + chr8_4:54395309-54395328 Msa1334080:intron 50.0%
TGAGGGTGGCAGATATGAGT+AGG + chr8_4:54395323-54395342 Msa1334080:intron 50.0%
GGCAGATATGAGTAGGAGTG+TGG + chr8_4:54395330-54395349 Msa1334080:intron 50.0%
CCTCGTGTTTCATCAGTGAG+TGG - chr8_4:54395540-54395559 None:intergenic 50.0%
CCACTCACTGATGAAACACG+AGG + chr8_4:54395537-54395556 Msa1334080:intron 50.0%
TCTCCCTCTCAAGATGGAAG+TGG + chr8_4:54395903-54395922 Msa1334080:three_prime_UTR 50.0%
TGAACATGGCTCCACCAAAG+GGG - chr8_4:54396291-54396310 None:intergenic 50.0%
GTTGAACATGGCTCCACCAA+AGG - chr8_4:54396293-54396312 None:intergenic 50.0%
! GACGGCGATGATGATGCTGA+AGG - chr8_4:54391155-54391174 None:intergenic 55.0%
AGGAGTGGTGTTTGTGTCGC+CGG - chr8_4:54391189-54391208 None:intergenic 55.0%
CACTCCTCCGCCATCTTCTT+CGG + chr8_4:54391202-54391221 Msa1334080:CDS 55.0%
! TCTGGAACCGCCGAAGAAGA+TGG - chr8_4:54391215-54391234 None:intergenic 55.0%
!! AACGGAGAAGGGGAAGCATC+TGG - chr8_4:54391233-54391252 None:intergenic 55.0%
! AGGAACTCGATGGCGGCAAA+CGG - chr8_4:54391251-54391270 None:intergenic 55.0%
GACAGTGAGGAACTCGATGG+CGG - chr8_4:54391258-54391277 None:intergenic 55.0%
TGAGGTGGTGACAGACAGTG+AGG - chr8_4:54391271-54391290 None:intergenic 55.0%
CACTGTCTGTCACCACCTCA+AGG + chr8_4:54391271-54391290 Msa1334080:CDS 55.0%
CGATCTAGACCGGGAACATC+TGG - chr8_4:54391756-54391775 None:intergenic 55.0%
GTGACAGAGTCTAGGGAAGG+TGG + chr8_4:54392286-54392305 Msa1334080:intron 55.0%
GGAGTAGGAGAAGGATCGAG+AGG + chr8_4:54392614-54392633 Msa1334080:CDS 55.0%
!!! GCGCTTTAGCTTTTGGCTGG+TGG + chr8_4:54392851-54392870 Msa1334080:intron 55.0%
! TGGCTGGTGGTTTGGATGGT+AGG + chr8_4:54392864-54392883 Msa1334080:intron 55.0%
TGTCCACCCTTCTTCTCCCT+AGG - chr8_4:54393092-54393111 None:intergenic 55.0%
TAGGGAGAAGAAGGGTGGAC+AGG + chr8_4:54393091-54393110 Msa1334080:intron 55.0%
TTTGCACTCTGATGCCCCTC+TGG + chr8_4:54393751-54393770 Msa1334080:intron 55.0%
GCTTTGTGCAGAGCAAGGGA+AGG + chr8_4:54394362-54394381 Msa1334080:intron 55.0%
AAACACGAGGGAAGTTGGGG+TGG + chr8_4:54395550-54395569 Msa1334080:intron 55.0%
AACACGAGGGAAGTTGGGGT+GGG + chr8_4:54395551-54395570 Msa1334080:intron 55.0%
ATGGAAGTGGAAAGGGCGAG+AGG + chr8_4:54395916-54395935 Msa1334080:three_prime_UTR 55.0%
TGGAAGTGGAAAGGGCGAGA+GGG + chr8_4:54395917-54395936 Msa1334080:three_prime_UTR 55.0%
!! CGAAGAAGATGGCGGAGGAG+TGG - chr8_4:54391204-54391223 None:intergenic 60.0%
TCCTCCGCCATCTTCTTCGG+CGG + chr8_4:54391205-54391224 Msa1334080:CDS 60.0%
GGAACCGCCGAAGAAGATGG+CGG - chr8_4:54391212-54391231 None:intergenic 60.0%
! GATGGCGGCAAACGGAGAAG+GGG - chr8_4:54391243-54391262 None:intergenic 60.0%
! CGATGGCGGCAAACGGAGAA+GGG - chr8_4:54391244-54391263 None:intergenic 60.0%
! TCGATGGCGGCAAACGGAGA+AGG - chr8_4:54391245-54391264 None:intergenic 60.0%
GATTGGGGACATTACCCCCC+TGG + chr8_4:54392523-54392542 Msa1334080:CDS 60.0%
TGGAGGGCCTAGGGAGAAGA+AGG + chr8_4:54393082-54393101 Msa1334080:intron 60.0%
GGAGGGCCTAGGGAGAAGAA+GGG + chr8_4:54393083-54393102 Msa1334080:intron 60.0%
AGGGAAGTTGGGGTGGGTGT+GGG + chr8_4:54395557-54395576 Msa1334080:intron 60.0%
TCGCCGTCAACGGCTGTCAC+CGG + chr8_4:54391167-54391186 Msa1334080:CDS 65.0%
TCGCCGGTGACAGCCGTTGA+CGG - chr8_4:54391173-54391192 None:intergenic 65.0%
! ACCGCCGAAGAAGATGGCGG+AGG - chr8_4:54391209-54391228 None:intergenic 65.0%
GGGGACATTACCCCCCTGGA+TGG + chr8_4:54392527-54392546 Msa1334080:CDS 65.0%
GGGCCTAGGGAGAAGAAGGG+TGG + chr8_4:54393086-54393105 Msa1334080:intron 65.0%
GAGGGAAGTTGGGGTGGGTG+TGG + chr8_4:54395556-54395575 Msa1334080:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54391005 54396314 54391005 ID=Msa1334080;Name=Msa1334080
chr8_4 mRNA 54391005 54396314 54391005 ID=Msa1334080-mRNA-1;Parent=Msa1334080;Name=Msa1334080-mRNA-1;_AED=0.29;_eAED=0.29;_QI=115|1|1|1|0.75|0.77|9|451|219
chr8_4 exon 54391005 54391060 54391005 ID=Msa1334080-mRNA-1:exon:16914;Parent=Msa1334080-mRNA-1
chr8_4 exon 54391081 54391292 54391081 ID=Msa1334080-mRNA-1:exon:16915;Parent=Msa1334080-mRNA-1
chr8_4 exon 54391657 54391781 54391657 ID=Msa1334080-mRNA-1:exon:16916;Parent=Msa1334080-mRNA-1
chr8_4 exon 54391870 54391907 54391870 ID=Msa1334080-mRNA-1:exon:16917;Parent=Msa1334080-mRNA-1
chr8_4 exon 54392519 54392635 54392519 ID=Msa1334080-mRNA-1:exon:16918;Parent=Msa1334080-mRNA-1
chr8_4 exon 54392727 54392806 54392727 ID=Msa1334080-mRNA-1:exon:16919;Parent=Msa1334080-mRNA-1
chr8_4 exon 54393261 54393297 54393261 ID=Msa1334080-mRNA-1:exon:16920;Parent=Msa1334080-mRNA-1
chr8_4 exon 54394373 54394414 54394373 ID=Msa1334080-mRNA-1:exon:16921;Parent=Msa1334080-mRNA-1
chr8_4 exon 54395796 54396314 54395796 ID=Msa1334080-mRNA-1:exon:16922;Parent=Msa1334080-mRNA-1
chr8_4 five_prime_UTR 54391005 54391060 54391005 ID=Msa1334080-mRNA-1:five_prime_utr;Parent=Msa1334080-mRNA-1
chr8_4 five_prime_UTR 54391081 54391139 54391081 ID=Msa1334080-mRNA-1:five_prime_utr;Parent=Msa1334080-mRNA-1
chr8_4 CDS 54391140 54391292 54391140 ID=Msa1334080-mRNA-1:cds;Parent=Msa1334080-mRNA-1
chr8_4 CDS 54391657 54391781 54391657 ID=Msa1334080-mRNA-1:cds;Parent=Msa1334080-mRNA-1
chr8_4 CDS 54391870 54391907 54391870 ID=Msa1334080-mRNA-1:cds;Parent=Msa1334080-mRNA-1
chr8_4 CDS 54392519 54392635 54392519 ID=Msa1334080-mRNA-1:cds;Parent=Msa1334080-mRNA-1
chr8_4 CDS 54392727 54392806 54392727 ID=Msa1334080-mRNA-1:cds;Parent=Msa1334080-mRNA-1
chr8_4 CDS 54393261 54393297 54393261 ID=Msa1334080-mRNA-1:cds;Parent=Msa1334080-mRNA-1
chr8_4 CDS 54394373 54394414 54394373 ID=Msa1334080-mRNA-1:cds;Parent=Msa1334080-mRNA-1
chr8_4 CDS 54395796 54395863 54395796 ID=Msa1334080-mRNA-1:cds;Parent=Msa1334080-mRNA-1
chr8_4 three_prime_UTR 54395864 54396314 54395864 ID=Msa1334080-mRNA-1:three_prime_utr;Parent=Msa1334080-mRNA-1
Gene Sequence

>Msa1334080

ATGGCCACTGCACCTTCAGCATCATCATCGCCGTCAACGGCTGTCACCGGCGACACAAACACCACTCCTCCGCCATCTTCTTCGGCGGTTCCAGATGCTTCCCCTTCTCCGTTTGCCGCCATCGAGTTCCTCACTGTCTGTCACCACCTCAAGAAAACAAAGAGAGCAGGATGGGTGAGAAGAGATGTTAAGGATCCAGAATCTGTAGCTGATCACATGTATCGTATGAGTTTGATGGCTCTGATTGCACCAGATGTTCCCGGTCTAGATCGAAACAAGTGCATAAAAATGGCCATTGTTCATGACATTGCAGAAGCTTTGATTGGGGACATTACCCCCCTGGATGGAGTTTCAAAAGCAGATAAGAGTGAACGAGAACAAGCTGCACTTGAGTATATGTGCAAAATAATTGGAGTAGGAGAAGGATCGAGAGGAAAGGAAATTACTGAGTTGTGGATGGACTATGAAGCAAATTCTTCTCCAGAAGCGAAATTTGTCAAGGACCTTGACAAGGTAGAAATGATACTTCAAGCGCTGGATTATGAAGATGAGCAAGGGAAGGATTTGGATGAATTTTTCTGTTCAACTGCTGGGAAGTTCCAAACTGAAGTTGGCAAAGCTTGGGCATCAGAGATTGTATCGAGAAGGAGTAATACCTAA
Protein sequence

>Msa1334080

MATAPSASSSPSTAVTGDTNTTPPPSSSAVPDASPSPFAAIEFLTVCHHLKKTKRAGWVRRDVKDPESVADHMYRMSLMALIAPDVPGLDRNKCIKMAIVHDIAEALIGDITPLDGVSKADKSEREQAALEYMCKIIGVGEGSRGKEITELWMDYEANSSPEAKFVKDLDKVEMILQALDYEDEQGKDLDEFFCSTAGKFQTEVGKAWASEIVSRRSNT*