AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1223800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223800 MtrunA17_Chr4g0075581 96.881 481 15 0 1 481 1 481 0.0 953
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223800 AT4G14590.1 55.932 472 182 3 11 481 16 462 7.85e-180 514

Find 169 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTGAAACATCAACTTATT+TGG 0.070670 8_1:-88405283 Msa1223800:CDS
CGCAACTGTGTCTCCATTTC+TGG 0.098968 8_1:+88404771 None:intergenic
TGTATACCTTCTGGGAAATT+TGG 0.121298 8_1:-88402253 Msa1223800:three_prime_UTR
AACTAAGATTCCACAAAATT+TGG 0.129583 8_1:+88402005 None:intergenic
TTTCATTTATGTTTGAAAAT+TGG 0.160887 8_1:-88404963 Msa1223800:CDS
TAATATACTCCAAAGCATTT+TGG 0.174772 8_1:-88402060 Msa1223800:three_prime_UTR
TTTGCTTACTCATGTGAAAT+TGG 0.188512 8_1:-88404745 Msa1223800:CDS
TTGCTGTTAGTGACTCATTT+TGG 0.192633 8_1:-88402280 Msa1223800:three_prime_UTR
ATTTCAGTGATGATAATTTA+TGG 0.209364 8_1:-88405178 Msa1223800:CDS
TTAAGGAGAATGGTGGTTTA+AGG 0.210892 8_1:+88405489 None:intergenic
TTGAAATATCCTCATGGTTT+TGG 0.253341 8_1:-88402313 Msa1223800:three_prime_UTR
TTCATTTATGTTTGAAAATT+GGG 0.254201 8_1:-88404962 Msa1223800:CDS
GTATACCTTCTGGGAAATTT+GGG 0.264193 8_1:-88402252 Msa1223800:three_prime_UTR
TTCAATAAATAATGAGCTTA+AGG 0.271738 8_1:-88402813 Msa1223800:three_prime_UTR
AAGTTTGTGGCTGTTTATTT+TGG 0.276428 8_1:-88402121 Msa1223800:three_prime_UTR
TTTATGGCTTTGTGAGAAAT+TGG 0.284235 8_1:-88405162 Msa1223800:CDS
CCTAAAGTATTAAAACTAGA+TGG 0.289798 8_1:+88404861 None:intergenic
CTGTCCTTAACTTTCCCTTT+TGG 0.292299 8_1:+88402448 None:intergenic
GTATGTGTTTCTTCGAGTTT+TGG 0.298933 8_1:-88405072 Msa1223800:CDS
TATTCGGTTGTTGCAGGATT+TGG 0.298936 8_1:-88404931 Msa1223800:CDS
GTTCCTAGATGGGCTGTTAT+TGG 0.301065 8_1:-88404585 Msa1223800:CDS
TTCCTGAATTTAAGTCTATA+TGG 0.303051 8_1:-88404902 Msa1223800:CDS
AGAAATTCTTTAGAGCATTC+AGG 0.304801 8_1:+88404195 None:intergenic
TGGCGTGTAAGTGTTTGATA+TGG 0.312387 8_1:+88405384 None:intergenic
TTTGGGAGTTGTATACCTTC+TGG 0.314653 8_1:-88402262 Msa1223800:three_prime_UTR
CGTTGAGGCCAATGCGAAAC+TGG 0.319036 8_1:-88404529 Msa1223800:CDS
CAGCTTCATGAGGTGCTGTC+AGG 0.320098 8_1:+88405564 None:intergenic
ATTTGTTTGCGATTTCCATT+TGG 0.320727 8_1:-88405646 None:intergenic
TGCTCTAAAGAATTTCTTCC+AGG 0.320810 8_1:-88404189 Msa1223800:intron
CACAAGGATATGATTGTTAA+AGG 0.323161 8_1:-88404345 Msa1223800:CDS
TTGCTTACTCATGTGAAATT+GGG 0.331574 8_1:-88404744 Msa1223800:CDS
GGTGAAACATCAACTTATTT+GGG 0.332157 8_1:-88405282 Msa1223800:CDS
TGAATGTATTCATCGGGATT+TGG 0.333951 8_1:+88405461 None:intergenic
TCTTGTGGACAACTATGATA+TGG 0.338106 8_1:-88404370 Msa1223800:CDS
GTTTGAGTCTTTGAAGCGTT+TGG 0.343614 8_1:-88405021 Msa1223800:CDS
TGCTTCAAGCACCTCTCAAC+AGG 0.343750 8_1:+88402223 None:intergenic
TAAGGGAAGGTTGAAGAGAT+TGG 0.345643 8_1:+88405507 None:intergenic
ATTGGATATTCTTGATGCTT+GGG 0.353018 8_1:-88402482 Msa1223800:three_prime_UTR
TTCCATATAGACTTAAATTC+AGG 0.357152 8_1:+88404900 None:intergenic
AACTATAAGTAGTAATCTTT+AGG 0.368803 8_1:+88402638 None:intergenic
CACCAACAATTTGCCTCAAA+AGG 0.368885 8_1:+88405204 None:intergenic
AGTCTGATATAGTTCCTAGA+TGG 0.373472 8_1:-88404596 Msa1223800:CDS
ATCGGGATTTGGAATGGTTA+AGG 0.374354 8_1:+88405472 None:intergenic
CATTGGATATTCTTGATGCT+TGG 0.377065 8_1:-88402483 Msa1223800:three_prime_UTR
TTGTAACTTGGATTGAATAC+TGG 0.383970 8_1:-88402534 Msa1223800:three_prime_UTR
CGATATTGAGGAGGAGGTTG+AGG 0.384212 8_1:+88405336 None:intergenic
TAAGGAGAATGGTGGTTTAA+GGG 0.384677 8_1:+88405490 None:intergenic
TAGAGAATTCCAAAATGCTT+TGG 0.386693 8_1:+88402051 None:intergenic
TAAGTGTTTGATATGGGTTT+TGG 0.387861 8_1:+88405391 None:intergenic
TTGGGAGTTGTATACCTTCT+GGG 0.390833 8_1:-88402261 Msa1223800:three_prime_UTR
ACTACAACAGTCTCTTTATC+AGG 0.391900 8_1:+88404672 None:intergenic
GGGAAAGTTAAGGACAGAAC+TGG 0.395012 8_1:-88402442 Msa1223800:three_prime_UTR
CTGTTGTAGTTGATATAGTT+AGG 0.396258 8_1:-88404659 Msa1223800:CDS
TTTGTTTGCGATTTCCATTT+GGG 0.396708 8_1:-88405645 None:intergenic
ATGATTCGCGTCTCGGGGAT+TGG 0.405415 8_1:-88405248 Msa1223800:CDS
AGTCTGCCAGAGTTATTTGT+TGG 0.406324 8_1:-88402366 Msa1223800:three_prime_UTR
GCTTAGGATCACTCCAGAAA+TGG 0.419281 8_1:-88404784 Msa1223800:CDS
AAGATAAGAAGATGCTACTT+TGG 0.419490 8_1:-88402762 Msa1223800:three_prime_UTR
CGTTCAAAGCTGTTGACATA+TGG 0.420694 8_1:-88402189 Msa1223800:three_prime_UTR
TATTATACCGTTTGTTGCCC+TGG 0.423449 8_1:+88402878 None:intergenic
GATTGTTAAAGGTGTCTCAT+TGG 0.424407 8_1:-88404334 Msa1223800:CDS
TTCATTGTATTGTAAGTTTG+TGG 0.426545 8_1:-88402166 Msa1223800:three_prime_UTR
GTTGGTCATCTCCACGTATT+GGG 0.427489 8_1:+88404416 None:intergenic
CATGAGGTGCTGTCAGGGTC+AGG 0.427725 8_1:+88405570 None:intergenic
CTAGATGGGCTGTTATTGGT+TGG 0.429296 8_1:-88404581 Msa1223800:CDS
GGCGTAACCGTCGGTGATTA+TGG 0.432609 8_1:+88405364 None:intergenic
CTAATCTTCACCTTCCCAAA+TGG 0.435274 8_1:+88405631 None:intergenic
TTCACCGAACCAAGGAGCTT+AGG 0.436137 8_1:+88405299 None:intergenic
GTTTGAGAGAGATTTCGATT+TGG 0.436427 8_1:+88405537 None:intergenic
CACCTCTACCCTAAGCTCCT+TGG 0.438635 8_1:-88405308 Msa1223800:CDS
TTCACTTATTTCCATCATCA+TGG 0.439416 8_1:-88405600 Msa1223800:exon
TGCAGAATTGCTCTATGCCT+TGG 0.442476 8_1:-88402733 Msa1223800:three_prime_UTR
TTTGGAATGGTTAAGGAGAA+TGG 0.444668 8_1:+88405479 None:intergenic
GATGAAATGATTCGCGTCTC+GGG 0.452056 8_1:-88405254 Msa1223800:CDS
TCACCGAACCAAGGAGCTTA+GGG 0.454863 8_1:+88405300 None:intergenic
TGGGCACCGATGAGGCCAAA+AGG 0.455183 8_1:-88402463 Msa1223800:three_prime_UTR
CGAGTAGGTATGCTTTGCTT+AGG 0.455189 8_1:-88404800 Msa1223800:CDS
TTGAGTTGAATGTATTCATC+GGG 0.458483 8_1:+88405455 None:intergenic
TGTTGGTCATCTCCACGTAT+TGG 0.458992 8_1:+88404415 None:intergenic
CGATGAAATGATTCGCGTCT+CGG 0.465844 8_1:-88405255 Msa1223800:CDS
CTACCCTAAGCTCCTTGGTT+CGG 0.475301 8_1:-88405303 Msa1223800:CDS
GTTTGTTGCCCTGGCTGACT+CGG 0.486129 8_1:+88402887 None:intergenic
GAAATGGGGTTGGGTGAGAA+TGG 0.487022 8_1:+88405415 None:intergenic
GGAAGGTTGAAGAGATTGGA+GGG 0.487934 8_1:+88405511 None:intergenic
AGAGGTGGTGGACGATATTG+AGG 0.489507 8_1:+88405324 None:intergenic
AGCTTCATGAGGTGCTGTCA+GGG 0.494004 8_1:+88405565 None:intergenic
TATTTCTATAGATTGTAACT+TGG 0.494224 8_1:-88402546 Msa1223800:three_prime_UTR
GCAGAATTGCTCTATGCCTT+GGG 0.494754 8_1:-88402732 Msa1223800:three_prime_UTR
TTTAGTGAAGGGGACAATGT+AGG 0.502732 8_1:+88404252 None:intergenic
ATTGTCCCCTTCACTAAAAG+AGG 0.504227 8_1:-88404247 Msa1223800:CDS
GAATAATCTCGTTCGGTGGA+TGG 0.504819 8_1:+88404619 None:intergenic
TTCTTGAACACACTTACAGC+TGG 0.505903 8_1:+88402694 None:intergenic
GATGATGGAAATAAGTGAAA+TGG 0.507286 8_1:+88405604 None:intergenic
GGCATTTGATGTGGTTTGCT+AGG 0.507728 8_1:-88404710 Msa1223800:CDS
ATTGAGGAGGAGGTTGAGGA+AGG 0.508535 8_1:+88405340 None:intergenic
TCAGACTGAATAATCTCGTT+CGG 0.510418 8_1:+88404612 None:intergenic
GAGGAATTGTCAATGGTCAT+TGG 0.511054 8_1:-88402500 Msa1223800:three_prime_UTR
GGGAAGGTTGAAGAGATTGG+AGG 0.512263 8_1:+88405510 None:intergenic
TTTAATACTTTAGGATTTAG+CGG 0.512964 8_1:-88404852 Msa1223800:CDS
AACCAAGGAGCTTAGGGTAG+AGG 0.517188 8_1:+88405306 None:intergenic
GGAGCTTAGGGTAGAGGTGG+TGG 0.517887 8_1:+88405312 None:intergenic
TTATTTGTTGGCTAAAGAGA+GGG 0.518040 8_1:-88402354 Msa1223800:three_prime_UTR
TGCTTACTCATGTGAAATTG+GGG 0.519131 8_1:-88404743 Msa1223800:CDS
GCTGATCATTGTAGGGTGAA+TGG 0.520278 8_1:-88405050 Msa1223800:CDS
TTTCTCAGATTTATTTAACT+AGG 0.520412 8_1:-88404827 Msa1223800:CDS
CAACCAATAACAGCCCATCT+AGG 0.521491 8_1:+88404582 None:intergenic
ACCAACAATTTGCCTCAAAA+GGG 0.521729 8_1:+88405205 None:intergenic
GGCGTGTAAGTGTTTGATAT+GGG 0.523661 8_1:+88405385 None:intergenic
GGTGGACGATATTGAGGAGG+AGG 0.529438 8_1:+88405330 None:intergenic
CTAAAGTATTAAAACTAGAT+GGG 0.533260 8_1:+88404862 None:intergenic
CAGGTTCGGAACCATGATGA+TGG 0.534556 8_1:+88405589 None:intergenic
TGAGTCTTTGAAGCGTTTGG+AGG 0.535228 8_1:-88405018 Msa1223800:CDS
GAGGAGGAGGTTGAGGAAGG+TGG 0.536363 8_1:+88405343 None:intergenic
TGAATTTAAGTCTATATGGA+AGG 0.538174 8_1:-88404898 Msa1223800:CDS
TGCACCATCAACAAAATAGC+AGG 0.538696 8_1:+88404447 None:intergenic
GAGAATGGTGGTTTAAGGGA+AGG 0.539834 8_1:+88405494 None:intergenic
TGAGAGGTGCTTGAAGCAGA+TGG 0.544004 8_1:-88402218 Msa1223800:three_prime_UTR
GTTGAGTTGAATGTATTCAT+CGG 0.545569 8_1:+88405454 None:intergenic
GGTGCTGTCAGGGTCAGGTT+CGG 0.546218 8_1:+88405575 None:intergenic
GTATTCATCGGGATTTGGAA+TGG 0.547263 8_1:+88405466 None:intergenic
TGAAATTGGGGCATCAAAAG+AGG 0.557265 8_1:-88404731 Msa1223800:CDS
TTTGCGATTTCCATTTGGGA+AGG 0.558427 8_1:-88405641 None:intergenic
AAACAAAGCCAGTTTCGCAT+TGG 0.558647 8_1:+88404521 None:intergenic
TTTATGTTTGAAAATTGGGA+GGG 0.560716 8_1:-88404958 Msa1223800:CDS
TTTCGATTTCTTGAAAGCAA+AGG 0.563601 8_1:-88404309 Msa1223800:CDS
GAATCTTAGTTAACAAAATG+TGG 0.565433 8_1:-88401993 Msa1223800:three_prime_UTR
GTTATTTGTTGGCTAAAGAG+AGG 0.566308 8_1:-88402355 Msa1223800:three_prime_UTR
GAGGCCAAAAGGGAAAGTTA+AGG 0.568809 8_1:-88402452 Msa1223800:three_prime_UTR
AATACTTGCATGTGAACTCA+AGG 0.569253 8_1:-88402416 Msa1223800:three_prime_UTR
ATGAAATGATTCGCGTCTCG+GGG 0.570789 8_1:-88405253 Msa1223800:CDS
CTTTAGCCAACAAATAACTC+TGG 0.572313 8_1:+88402360 None:intergenic
ATCAAAAGAGGCATTTGATG+TGG 0.574765 8_1:-88404719 Msa1223800:CDS
ATTTATGTTTGAAAATTGGG+AGG 0.576348 8_1:-88404959 Msa1223800:CDS
GTCTGATATAGTTCCTAGAT+GGG 0.576556 8_1:-88404595 Msa1223800:CDS
TTCATCTACAGAAACGCAGT+TGG 0.581346 8_1:+88402671 None:intergenic
CAACTATGATATGGAACACA+AGG 0.583574 8_1:-88404361 Msa1223800:CDS
GTTGGGTGAGAATGGCGTGA+AGG 0.583675 8_1:+88405423 None:intergenic
GGGCACCGATGAGGCCAAAA+GGG 0.585607 8_1:-88402462 Msa1223800:three_prime_UTR
GAGTCAGCCAGGGCAACAAA+CGG 0.588154 8_1:-88402885 Msa1223800:CDS
TAAGTAGTAATCTTTAGGCA+TGG 0.588922 8_1:+88402643 None:intergenic
TATACCTTCTGGGAAATTTG+GGG 0.589540 8_1:-88402251 Msa1223800:three_prime_UTR
TTGGGGATTACCCTGTTGAG+AGG 0.590500 8_1:-88402234 Msa1223800:three_prime_UTR
ATTTCTGTGTGAAGATAGTG+AGG 0.595600 8_1:-88404992 Msa1223800:CDS
TTGCATGTGAACTCAAGGAC+AGG 0.597347 8_1:-88402411 Msa1223800:three_prime_UTR
GGAAAGTTAAGGACAGAACT+GGG 0.599987 8_1:-88402441 Msa1223800:three_prime_UTR
GGTGGTGGACGATATTGAGG+AGG 0.601801 8_1:+88405327 None:intergenic
TTGTCCCCTTCACTAAAAGA+GGG 0.609008 8_1:-88404246 Msa1223800:CDS
CAAGGAGCTTAGGGTAGAGG+TGG 0.611596 8_1:+88405309 None:intergenic
GACTGAATAATCTCGTTCGG+TGG 0.612467 8_1:+88404615 None:intergenic
TAATCCCCAAATTTCCCAGA+AGG 0.612997 8_1:+88402247 None:intergenic
GGAATGGTTAAGGAGAATGG+TGG 0.620887 8_1:+88405482 None:intergenic
GAGGAAGGTGGCGTAACCGT+CGG 0.622799 8_1:+88405355 None:intergenic
TTGATGCTTGGGCACCGATG+AGG 0.623772 8_1:-88402471 Msa1223800:three_prime_UTR
TTTCAGTACCGAGTCAGCCA+GGG 0.625105 8_1:-88402895 Msa1223800:intron
ATTTAACTAGGACTTCGAGT+AGG 0.626493 8_1:-88404815 Msa1223800:CDS
CGAGACGCGAATCATTTCAT+CGG 0.628582 8_1:+88405256 None:intergenic
GTTCTATCACAATACTCCCA+AGG 0.631858 8_1:+88402716 None:intergenic
CACTAAAAGAGGGATTGAGT+AGG 0.637046 8_1:-88404236 Msa1223800:CDS
TAGGAAGAAGAGTTACGTTG+AGG 0.637935 8_1:-88404544 Msa1223800:CDS
GTTGATGTTTCACCGAACCA+AGG 0.650917 8_1:+88405291 None:intergenic
CAGAAATGGAGACACAGTTG+CGG 0.652784 8_1:-88404770 Msa1223800:CDS
GCTTCAAGCACCTCTCAACA+GGG 0.657571 8_1:+88402224 None:intergenic
GCTAAAGAGAGGGAAAAGTG+AGG 0.681796 8_1:-88402344 Msa1223800:three_prime_UTR
AAACCACTACACAAAACATG+TGG 0.683700 8_1:+88405095 None:intergenic
GCATTCTATTACCCAATACG+TGG 0.692736 8_1:-88404427 Msa1223800:CDS
TTTCTGTGTGAAGATAGTGA+GGG 0.713281 8_1:-88404991 Msa1223800:CDS
TTACACGCCATAATCACCGA+CGG 0.716397 8_1:-88405371 Msa1223800:CDS
CGATGATCACCAAAACCATG+AGG 0.732136 8_1:+88402304 None:intergenic
GAATGGCGTGAAGGATAGCG+TGG 0.737315 8_1:+88405432 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAATAATTTAGTTAAAAA+TGG - chr8_1:88404547-88404566 Msa1223800:CDS 10.0%
!! TGAATAATTTAGTTAAAAAT+GGG - chr8_1:88404548-88404567 Msa1223800:CDS 10.0%
!! TTTCATTTATGTTTGAAAAT+TGG - chr8_1:88402626-88402645 Msa1223800:three_prime_UTR 15.0%
!! TTCATTTATGTTTGAAAATT+GGG - chr8_1:88402627-88402646 Msa1223800:three_prime_UTR 15.0%
!! AATTGAATCTATATAAGAAA+GGG + chr8_1:88403541-88403560 None:intergenic 15.0%
!!! AGTTTTATTTCATATTCTAT+TGG - chr8_1:88403905-88403924 Msa1223800:intron 15.0%
!!! TACTTTTTACAATTTTCTTT+TGG - chr8_1:88404094-88404113 Msa1223800:intron 15.0%
!!! TCTTTTTAATTTAGAAGTAA+TGG - chr8_1:88404262-88404281 Msa1223800:CDS 15.0%
!! ATCAAAATACAAAAAAGAAA+TGG + chr8_1:88404623-88404642 None:intergenic 15.0%
!!! CATTTTGTTCTTTATTTAAT+TGG - chr8_1:88404654-88404673 Msa1223800:CDS 15.0%
!! ATTTCAGTGATGATAATTTA+TGG - chr8_1:88402411-88402430 Msa1223800:three_prime_UTR 20.0%
!!! CTAAAGTATTAAAACTAGAT+GGG + chr8_1:88402730-88402749 None:intergenic 20.0%
!!! TTTAATACTTTAGGATTTAG+CGG - chr8_1:88402737-88402756 Msa1223800:three_prime_UTR 20.0%
!! TTTCTCAGATTTATTTAACT+AGG - chr8_1:88402762-88402781 Msa1223800:three_prime_UTR 20.0%
!! ATTGAATCTATATAAGAAAG+GGG + chr8_1:88403540-88403559 None:intergenic 20.0%
!! CAATTGAATCTATATAAGAA+AGG + chr8_1:88403542-88403561 None:intergenic 20.0%
!!! GCTATATATAAATTTGCTAA+TGG + chr8_1:88403592-88403611 None:intergenic 20.0%
!!! AAAACTGAAATCTATTTTCA+GGG + chr8_1:88403891-88403910 None:intergenic 20.0%
!!! TAAAACTGAAATCTATTTTC+AGG + chr8_1:88403892-88403911 None:intergenic 20.0%
!!! AAAAGTAGCTTTATAATGTT+GGG + chr8_1:88404081-88404100 None:intergenic 20.0%
!!! AAAAAGTAGCTTTATAATGT+TGG + chr8_1:88404082-88404101 None:intergenic 20.0%
!!! AATGGATATTTTTGAAATAC+AGG - chr8_1:88404280-88404299 Msa1223800:CDS 20.0%
!! GCTCATTATTTATTGAAAAA+TGG + chr8_1:88404773-88404792 None:intergenic 20.0%
!! TTCAATAAATAATGAGCTTA+AGG - chr8_1:88404776-88404795 Msa1223800:CDS 20.0%
!! AACTATAAGTAGTAATCTTT+AGG + chr8_1:88404954-88404973 None:intergenic 20.0%
!!! TATTTCTATAGATTGTAACT+TGG - chr8_1:88405043-88405062 Msa1223800:CDS 20.0%
!!! CTATGGTTTTTAACAAAATT+TGG - chr8_1:88405558-88405577 Msa1223800:CDS 20.0%
!!! GTAAAAAATGCAATTTTTAG+AGG - chr8_1:88405618-88405637 Msa1223800:five_prime_UTR 20.0%
!! TGACACTTTTATTGGATAAA+TGG - chr8_1:88402450-88402469 Msa1223800:three_prime_UTR 25.0%
!! GACACTTTTATTGGATAAAT+GGG - chr8_1:88402451-88402470 Msa1223800:three_prime_UTR 25.0%
! ATTTATGTTTGAAAATTGGG+AGG - chr8_1:88402630-88402649 Msa1223800:three_prime_UTR 25.0%
! TTTATGTTTGAAAATTGGGA+GGG - chr8_1:88402631-88402650 Msa1223800:three_prime_UTR 25.0%
! TTCCTGAATTTAAGTCTATA+TGG - chr8_1:88402687-88402706 Msa1223800:three_prime_UTR 25.0%
! TTCCATATAGACTTAAATTC+AGG + chr8_1:88402692-88402711 None:intergenic 25.0%
! TGAATTTAAGTCTATATGGA+AGG - chr8_1:88402691-88402710 Msa1223800:three_prime_UTR 25.0%
!! CCTAAAGTATTAAAACTAGA+TGG + chr8_1:88402731-88402750 None:intergenic 25.0%
!!! CCATCTAGTTTTAATACTTT+AGG - chr8_1:88402728-88402747 Msa1223800:three_prime_UTR 25.0%
! GACAAATTTAAGAAACTTGA+AGG + chr8_1:88403449-88403468 None:intergenic 25.0%
! TTTGTCTCCAATCTAAATTA+AGG - chr8_1:88403463-88403482 Msa1223800:intron 25.0%
! TTAGCTACCTTAATTTAGAT+TGG + chr8_1:88403473-88403492 None:intergenic 25.0%
! TTGAATCTATATAAGAAAGG+GGG + chr8_1:88403539-88403558 None:intergenic 25.0%
! ATTTCTTAACAAAAGACCAA+AGG + chr8_1:88403635-88403654 None:intergenic 25.0%
!!! TTTGGTCTTTTGTTAAGAAA+TGG - chr8_1:88403634-88403653 Msa1223800:intron 25.0%
! CATAATATCTTTACGAACAT+GGG + chr8_1:88404503-88404522 None:intergenic 25.0%
! ACATAATATCTTTACGAACA+TGG + chr8_1:88404504-88404523 None:intergenic 25.0%
! TTCATTGTATTGTAAGTTTG+TGG - chr8_1:88405423-88405442 Msa1223800:CDS 25.0%
!!! TTTTTTTGAGAAGAAGTTTG+TGG - chr8_1:88405455-88405474 Msa1223800:CDS 25.0%
!!! TAATATACTCCAAAGCATTT+TGG - chr8_1:88405529-88405548 Msa1223800:CDS 25.0%
! AACTAAGATTCCACAAAATT+TGG + chr8_1:88405587-88405606 None:intergenic 25.0%
! GAATCTTAGTTAACAAAATG+TGG - chr8_1:88405596-88405615 Msa1223800:exon 25.0%
!! GATGATGGAAATAAGTGAAA+TGG + chr8_1:88401988-88402007 None:intergenic 30.0%
TTCACTTATTTCCATCATCA+TGG - chr8_1:88401989-88402008 Msa1223800:three_prime_UTR 30.0%
!! TTGAGTTGAATGTATTCATC+GGG + chr8_1:88402137-88402156 None:intergenic 30.0%
!! GTTGAGTTGAATGTATTCAT+CGG + chr8_1:88402138-88402157 None:intergenic 30.0%
! TAAGTGTTTGATATGGGTTT+TGG + chr8_1:88402201-88402220 None:intergenic 30.0%
GGTGAAACATCAACTTATTT+GGG - chr8_1:88402307-88402326 Msa1223800:three_prime_UTR 30.0%
!!! CTTTATTGATTTCCCTTTTG+AGG - chr8_1:88402372-88402391 Msa1223800:three_prime_UTR 30.0%
!! TTTATGGCTTTGTGAGAAAT+TGG - chr8_1:88402427-88402446 Msa1223800:three_prime_UTR 30.0%
!! GAAATTGGTGACACTTTTAT+TGG - chr8_1:88402442-88402461 Msa1223800:three_prime_UTR 30.0%
! AAATTGGGAGGGATTTTATT+CGG - chr8_1:88402642-88402661 Msa1223800:three_prime_UTR 30.0%
TTTGCTTACTCATGTGAAAT+TGG - chr8_1:88402844-88402863 Msa1223800:three_prime_UTR 30.0%
TTGCTTACTCATGTGAAATT+GGG - chr8_1:88402845-88402864 Msa1223800:three_prime_UTR 30.0%
! CTGTTGTAGTTGATATAGTT+AGG - chr8_1:88402930-88402949 Msa1223800:intron 30.0%
!!! AACTGGCTTTGTTTTATGAT+TGG - chr8_1:88403077-88403096 Msa1223800:intron 30.0%
!!! TTGGCTCTTTTTTGATGAAA+AGG - chr8_1:88403096-88403115 Msa1223800:intron 30.0%
!! TGAGTTTTTGTTACTTCTTG+TGG - chr8_1:88403204-88403223 Msa1223800:intron 30.0%
CACAAGGATATGATTGTTAA+AGG - chr8_1:88403244-88403263 Msa1223800:intron 30.0%
TTTCGATTTCTTGAAAGCAA+AGG - chr8_1:88403280-88403299 Msa1223800:intron 30.0%
!! AGAAATTCTTTAGAGCATTC+AGG + chr8_1:88403397-88403416 None:intergenic 30.0%
AAGGTAGCTAAGAATGTTAT+AGG - chr8_1:88403482-88403501 Msa1223800:intron 30.0%
! AGAATGTTATAGGAGTATGT+AGG - chr8_1:88403492-88403511 Msa1223800:intron 30.0%
!!! TGTTTTGTTTGCATTTCCTT+TGG - chr8_1:88403616-88403635 Msa1223800:intron 30.0%
TTAAGAAATGGCTGTTTAGT+TGG - chr8_1:88403646-88403665 Msa1223800:intron 30.0%
TAAGAAATGGCTGTTTAGTT+GGG - chr8_1:88403647-88403666 Msa1223800:intron 30.0%
!!! ACCAAATGCATTTTTAAGTG+TGG - chr8_1:88403700-88403719 Msa1223800:intron 30.0%
ACCACACTTAAAAATGCATT+TGG + chr8_1:88403704-88403723 None:intergenic 30.0%
GAACAAATAATCTGGATCAA+AGG + chr8_1:88403857-88403876 None:intergenic 30.0%
!! TATTTTCAGGGATTATGATG+CGG + chr8_1:88403879-88403898 None:intergenic 30.0%
GTGATACTTGAGTTAAAAAC+AGG + chr8_1:88404124-88404143 None:intergenic 30.0%
! AGTATCACAAGTTTGTCTTT+TGG - chr8_1:88404136-88404155 Msa1223800:intron 30.0%
AGAGCTCTATATTCAATCAA+AGG - chr8_1:88404447-88404466 Msa1223800:CDS 30.0%
! TATCTAGAAACAATTTTGCC+TGG - chr8_1:88404471-88404490 Msa1223800:CDS 30.0%
!! AGTTCTGTAAAAGCTCTAAA+GGG + chr8_1:88404594-88404613 None:intergenic 30.0%
! GAAAAATGGTGATGTAAGTA+TGG + chr8_1:88404759-88404778 None:intergenic 30.0%
! AAGATAAGAAGATGCTACTT+TGG - chr8_1:88404827-88404846 Msa1223800:CDS 30.0%
TAAGTAGTAATCTTTAGGCA+TGG + chr8_1:88404949-88404968 None:intergenic 30.0%
! AATTTTGTCTGACATCAATG+AGG + chr8_1:88404988-88405007 None:intergenic 30.0%
TTGTAACTTGGATTGAATAC+TGG - chr8_1:88405055-88405074 Msa1223800:CDS 30.0%
!!! TTGAATACTGGAGTTTTTTG+TGG - chr8_1:88405067-88405086 Msa1223800:CDS 30.0%
ATTGGATATTCTTGATGCTT+GGG - chr8_1:88405107-88405126 Msa1223800:CDS 30.0%
! TTATTTGTTGGCTAAAGAGA+GGG - chr8_1:88405235-88405254 Msa1223800:CDS 30.0%
! TTTTCGTTGAAATATCCTCA+TGG - chr8_1:88405270-88405289 Msa1223800:CDS 30.0%
! TTGAAATATCCTCATGGTTT+TGG - chr8_1:88405276-88405295 Msa1223800:CDS 30.0%
! AAGTTTGTGGCTGTTTATTT+TGG - chr8_1:88405468-88405487 Msa1223800:CDS 30.0%
TAGAGAATTCCAAAATGCTT+TGG + chr8_1:88405541-88405560 None:intergenic 30.0%
!!! AAGCATTTTGGAATTCTCTA+TGG - chr8_1:88405541-88405560 Msa1223800:CDS 30.0%
!! AATTTGGTAGCCAAATTTTG+TGG - chr8_1:88405574-88405593 Msa1223800:CDS 30.0%
!!! ATTTGGTTTTCAGCTTCATG+AGG + chr8_1:88402038-88402057 None:intergenic 35.0%
GTTTGAGAGAGATTTCGATT+TGG + chr8_1:88402055-88402074 None:intergenic 35.0%
TAAGGAGAATGGTGGTTTAA+GGG + chr8_1:88402102-88402121 None:intergenic 35.0%
TTAAGGAGAATGGTGGTTTA+AGG + chr8_1:88402103-88402122 None:intergenic 35.0%
! TTTGGAATGGTTAAGGAGAA+TGG + chr8_1:88402113-88402132 None:intergenic 35.0%
TGAATGTATTCATCGGGATT+TGG + chr8_1:88402131-88402150 None:intergenic 35.0%
!!! ATATGGGTTTTGGAGAAATG+GGG + chr8_1:88402191-88402210 None:intergenic 35.0%
!!! GATATGGGTTTTGGAGAAAT+GGG + chr8_1:88402192-88402211 None:intergenic 35.0%
!!! TGATATGGGTTTTGGAGAAA+TGG + chr8_1:88402193-88402212 None:intergenic 35.0%
CGGTGAAACATCAACTTATT+TGG - chr8_1:88402306-88402325 Msa1223800:three_prime_UTR 35.0%
ACCAACAATTTGCCTCAAAA+GGG + chr8_1:88402387-88402406 None:intergenic 35.0%
AAACCACTACACAAAACATG+TGG + chr8_1:88402497-88402516 None:intergenic 35.0%
!! GTATGTGTTTCTTCGAGTTT+TGG - chr8_1:88402517-88402536 Msa1223800:three_prime_UTR 35.0%
!!! AGTTTTGGCTGATCATTGTA+GGG - chr8_1:88402532-88402551 Msa1223800:three_prime_UTR 35.0%
ATTTCTGTGTGAAGATAGTG+AGG - chr8_1:88402597-88402616 Msa1223800:three_prime_UTR 35.0%
TTTCTGTGTGAAGATAGTGA+GGG - chr8_1:88402598-88402617 Msa1223800:three_prime_UTR 35.0%
ATTTAACTAGGACTTCGAGT+AGG - chr8_1:88402774-88402793 Msa1223800:three_prime_UTR 35.0%
TGCTTACTCATGTGAAATTG+GGG - chr8_1:88402846-88402865 Msa1223800:three_prime_UTR 35.0%
!! ATCAAAAGAGGCATTTGATG+TGG - chr8_1:88402870-88402889 Msa1223800:exon 35.0%
ACTACAACAGTCTCTTTATC+AGG + chr8_1:88402920-88402939 None:intergenic 35.0%
TCAGACTGAATAATCTCGTT+CGG + chr8_1:88402980-88402999 None:intergenic 35.0%
AGTCTGATATAGTTCCTAGA+TGG - chr8_1:88402993-88403012 Msa1223800:intron 35.0%
GTCTGATATAGTTCCTAGAT+GGG - chr8_1:88402994-88403013 Msa1223800:intron 35.0%
!!! GTTGGCTTTTGACAACTTTT+AGG - chr8_1:88403026-88403045 Msa1223800:intron 35.0%
!!! AGAACCTGCTATTTTGTTGA+TGG - chr8_1:88403138-88403157 Msa1223800:intron 35.0%
! CAAAAACTCAAGAAGAGTGT+TGG + chr8_1:88403194-88403213 None:intergenic 35.0%
TCTTGTGGACAACTATGATA+TGG - chr8_1:88403219-88403238 Msa1223800:intron 35.0%
CAACTATGATATGGAACACA+AGG - chr8_1:88403228-88403247 Msa1223800:intron 35.0%
!! GATTGTTAAAGGTGTCTCAT+TGG - chr8_1:88403255-88403274 Msa1223800:intron 35.0%
! TCAATCCCTCTTTTAGTGAA+GGG + chr8_1:88403351-88403370 None:intergenic 35.0%
!! TGCTCTAAAGAATTTCTTCC+AGG - chr8_1:88403400-88403419 Msa1223800:intron 35.0%
ATGATAGACTAGAACATACC+TGG + chr8_1:88403421-88403440 None:intergenic 35.0%
AGGTATGTTCTAGTCTATCA+TGG - chr8_1:88403420-88403439 Msa1223800:intron 35.0%
GGTATGTTCTAGTCTATCAT+GGG - chr8_1:88403421-88403440 Msa1223800:intron 35.0%
! TTATAGGAGTATGTAGGAAG+CGG - chr8_1:88403498-88403517 Msa1223800:intron 35.0%
AATCAGTTTCATGTGTGGTA+TGG - chr8_1:88403724-88403743 Msa1223800:intron 35.0%
TGAATTATGTAGCTGCTGTT+TGG + chr8_1:88403775-88403794 None:intergenic 35.0%
ATGATGCGGAACAAATAATC+TGG + chr8_1:88403865-88403884 None:intergenic 35.0%
AGTGAAGACTACAAAGAAGT+GGG + chr8_1:88404008-88404027 None:intergenic 35.0%
TCTTTGTAGTCTTCACTCTT+CGG - chr8_1:88404011-88404030 Msa1223800:intron 35.0%
ATGTTGTAAGAAGAGTAACC+TGG - chr8_1:88404049-88404068 Msa1223800:intron 35.0%
TATAATGTTGGGTTACATCC+AGG + chr8_1:88404070-88404089 None:intergenic 35.0%
TTTGAAAGTCAACCTCAACT+AGG + chr8_1:88404236-88404255 None:intergenic 35.0%
GATTGAATATAGAGCTCTCA+TGG + chr8_1:88404445-88404464 None:intergenic 35.0%
! CAGTTCTGTAAAAGCTCTAA+AGG + chr8_1:88404595-88404614 None:intergenic 35.0%
!!! AATACTGGAGTTTTTTGTGG+AGG - chr8_1:88405070-88405089 Msa1223800:CDS 35.0%
! TTTTGTGGAGGAATTGTCAA+TGG - chr8_1:88405082-88405101 Msa1223800:CDS 35.0%
CATTGGATATTCTTGATGCT+TGG - chr8_1:88405106-88405125 Msa1223800:CDS 35.0%
AATACTTGCATGTGAACTCA+AGG - chr8_1:88405173-88405192 Msa1223800:CDS 35.0%
CTTTAGCCAACAAATAACTC+TGG + chr8_1:88405232-88405251 None:intergenic 35.0%
! GTTATTTGTTGGCTAAAGAG+AGG - chr8_1:88405234-88405253 Msa1223800:CDS 35.0%
!! TTGCTGTTAGTGACTCATTT+TGG - chr8_1:88405309-88405328 Msa1223800:CDS 35.0%
! TGCTGTTAGTGACTCATTTT+GGG - chr8_1:88405310-88405329 Msa1223800:CDS 35.0%
! TGTATACCTTCTGGGAAATT+TGG - chr8_1:88405336-88405355 Msa1223800:CDS 35.0%
! GTATACCTTCTGGGAAATTT+GGG - chr8_1:88405337-88405356 Msa1223800:CDS 35.0%
! TATACCTTCTGGGAAATTTG+GGG - chr8_1:88405338-88405357 Msa1223800:CDS 35.0%
CTAATCTTCACCTTCCCAAA+TGG + chr8_1:88401961-88401980 None:intergenic 40.0%
TAAGGGAAGGTTGAAGAGAT+TGG + chr8_1:88402085-88402104 None:intergenic 40.0%
! ATCGGGATTTGGAATGGTTA+AGG + chr8_1:88402120-88402139 None:intergenic 40.0%
GTATTCATCGGGATTTGGAA+TGG + chr8_1:88402126-88402145 None:intergenic 40.0%
GGCGTGTAAGTGTTTGATAT+GGG + chr8_1:88402207-88402226 None:intergenic 40.0%
TGGCGTGTAAGTGTTTGATA+TGG + chr8_1:88402208-88402227 None:intergenic 40.0%
!!! TCCCTTTTGAGGCAAATTGT+TGG - chr8_1:88402383-88402402 Msa1223800:three_prime_UTR 40.0%
CACCAACAATTTGCCTCAAA+AGG + chr8_1:88402388-88402407 None:intergenic 40.0%
!!! CTTTTGAGGCAAATTGTTGG+TGG - chr8_1:88402386-88402405 Msa1223800:three_prime_UTR 40.0%
!!! GAGTTTTGGCTGATCATTGT+AGG - chr8_1:88402531-88402550 Msa1223800:three_prime_UTR 40.0%
!! GTTTGAGTCTTTGAAGCGTT+TGG - chr8_1:88402568-88402587 Msa1223800:three_prime_UTR 40.0%
! GGATTTTATTCGGTTGTTGC+AGG - chr8_1:88402652-88402671 Msa1223800:three_prime_UTR 40.0%
TATTCGGTTGTTGCAGGATT+TGG - chr8_1:88402658-88402677 Msa1223800:three_prime_UTR 40.0%
! TGAAATTGGGGCATCAAAAG+AGG - chr8_1:88402858-88402877 Msa1223800:three_prime_UTR 40.0%
TAGGAAGAAGAGTTACGTTG+AGG - chr8_1:88403045-88403064 Msa1223800:intron 40.0%
AAACAAAGCCAGTTTCGCAT+TGG + chr8_1:88403071-88403090 None:intergenic 40.0%
TGCACCATCAACAAAATAGC+AGG + chr8_1:88403145-88403164 None:intergenic 40.0%
GCATTCTATTACCCAATACG+TGG - chr8_1:88403162-88403181 Msa1223800:intron 40.0%
TTTAGTGAAGGGGACAATGT+AGG + chr8_1:88403340-88403359 None:intergenic 40.0%
ATTGTCCCCTTCACTAAAAG+AGG - chr8_1:88403342-88403361 Msa1223800:intron 40.0%
TTGTCCCCTTCACTAAAAGA+GGG - chr8_1:88403343-88403362 Msa1223800:intron 40.0%
! CAATCCCTCTTTTAGTGAAG+GGG + chr8_1:88403350-88403369 None:intergenic 40.0%
! CTCAATCCCTCTTTTAGTGA+AGG + chr8_1:88403352-88403371 None:intergenic 40.0%
CACTAAAAGAGGGATTGAGT+AGG - chr8_1:88403353-88403372 Msa1223800:intron 40.0%
GTGGTAATCAGTTTCATGTG+TGG - chr8_1:88403719-88403738 Msa1223800:intron 40.0%
GGTCAAAGACAAATCTTGCA+CGG + chr8_1:88403836-88403855 None:intergenic 40.0%
! TCTTGCTGTGACACATTTAC+TGG - chr8_1:88403970-88403989 Msa1223800:intron 40.0%
GAGTGAAGACTACAAAGAAG+TGG + chr8_1:88404009-88404028 None:intergenic 40.0%
AACCAAGTTGCCTAAACTTC+AGG + chr8_1:88404192-88404211 None:intergenic 40.0%
ACCAGTATAAGACCTAGTTG+AGG - chr8_1:88404221-88404240 Msa1223800:CDS 40.0%
! ACCTCAACTAGGTCTTATAC+TGG + chr8_1:88404225-88404244 None:intergenic 40.0%
TACGAACATGGGAATATACC+AGG + chr8_1:88404492-88404511 None:intergenic 40.0%
! TATTATACCGTTTGTTGCCC+TGG + chr8_1:88404714-88404733 None:intergenic 40.0%
GGACAATGTGAAAAAGAAGC+TGG - chr8_1:88404797-88404816 Msa1223800:CDS 40.0%
GTTCTATCACAATACTCCCA+AGG + chr8_1:88404876-88404895 None:intergenic 40.0%
TTCTTGAACACACTTACAGC+TGG + chr8_1:88404898-88404917 None:intergenic 40.0%
TTCATCTACAGAAACGCAGT+TGG + chr8_1:88404921-88404940 None:intergenic 40.0%
GAGGAATTGTCAATGGTCAT+TGG - chr8_1:88405089-88405108 Msa1223800:CDS 40.0%
! CTGTCCTTAACTTTCCCTTT+TGG + chr8_1:88405144-88405163 None:intergenic 40.0%
GGAAAGTTAAGGACAGAACT+GGG - chr8_1:88405148-88405167 Msa1223800:CDS 40.0%
AGTCTGCCAGAGTTATTTGT+TGG - chr8_1:88405223-88405242 Msa1223800:CDS 40.0%
!!! CTCATGGTTTTGGTGATCAT+CGG - chr8_1:88405286-88405305 Msa1223800:CDS 40.0%
TTTGGGAGTTGTATACCTTC+TGG - chr8_1:88405327-88405346 Msa1223800:CDS 40.0%
TTGGGAGTTGTATACCTTCT+GGG - chr8_1:88405328-88405347 Msa1223800:CDS 40.0%
TAATCCCCAAATTTCCCAGA+AGG + chr8_1:88405345-88405364 None:intergenic 40.0%
CGTTCAAAGCTGTTGACATA+TGG - chr8_1:88405400-88405419 Msa1223800:CDS 40.0%
GGAAGGTTGAAGAGATTGGA+GGG + chr8_1:88402081-88402100 None:intergenic 45.0%
GAGAATGGTGGTTTAAGGGA+AGG + chr8_1:88402098-88402117 None:intergenic 45.0%
GGAATGGTTAAGGAGAATGG+TGG + chr8_1:88402110-88402129 None:intergenic 45.0%
!!! GGTTTTGGAGAAATGGGGTT+GGG + chr8_1:88402186-88402205 None:intergenic 45.0%
TTACACGCCATAATCACCGA+CGG - chr8_1:88402218-88402237 Msa1223800:three_prime_UTR 45.0%
GTTGATGTTTCACCGAACCA+AGG + chr8_1:88402301-88402320 None:intergenic 45.0%
CGAGACGCGAATCATTTCAT+CGG + chr8_1:88402336-88402355 None:intergenic 45.0%
CGATGAAATGATTCGCGTCT+CGG - chr8_1:88402334-88402353 Msa1223800:three_prime_UTR 45.0%
GATGAAATGATTCGCGTCTC+GGG - chr8_1:88402335-88402354 Msa1223800:three_prime_UTR 45.0%
ATGAAATGATTCGCGTCTCG+GGG - chr8_1:88402336-88402355 Msa1223800:three_prime_UTR 45.0%
! GCACCACATGTTTTGTGTAG+TGG - chr8_1:88402491-88402510 Msa1223800:three_prime_UTR 45.0%
GCTGATCATTGTAGGGTGAA+TGG - chr8_1:88402539-88402558 Msa1223800:three_prime_UTR 45.0%
!! TGAGTCTTTGAAGCGTTTGG+AGG - chr8_1:88402571-88402590 Msa1223800:three_prime_UTR 45.0%
CGAGTAGGTATGCTTTGCTT+AGG - chr8_1:88402789-88402808 Msa1223800:three_prime_UTR 45.0%
GCTTAGGATCACTCCAGAAA+TGG - chr8_1:88402805-88402824 Msa1223800:three_prime_UTR 45.0%
CAGAAATGGAGACACAGTTG+CGG - chr8_1:88402819-88402838 Msa1223800:three_prime_UTR 45.0%
!! GGCATTTGATGTGGTTTGCT+AGG - chr8_1:88402879-88402898 Msa1223800:exon 45.0%
! GAATAATCTCGTTCGGTGGA+TGG + chr8_1:88402973-88402992 None:intergenic 45.0%
GACTGAATAATCTCGTTCGG+TGG + chr8_1:88402977-88402996 None:intergenic 45.0%
!! GTTCCTAGATGGGCTGTTAT+TGG - chr8_1:88403004-88403023 Msa1223800:intron 45.0%
CAACCAATAACAGCCCATCT+AGG + chr8_1:88403010-88403029 None:intergenic 45.0%
!! CTAGATGGGCTGTTATTGGT+TGG - chr8_1:88403008-88403027 Msa1223800:intron 45.0%
GTTGGTCATCTCCACGTATT+GGG + chr8_1:88403176-88403195 None:intergenic 45.0%
TGTTGGTCATCTCCACGTAT+TGG + chr8_1:88403177-88403196 None:intergenic 45.0%
TGGCTGTTTAGTTGGGACTT+AGG - chr8_1:88403654-88403673 Msa1223800:intron 45.0%
TGTGTCACAGCAAGAGAAGA+GGG + chr8_1:88403965-88403984 None:intergenic 45.0%
ATGTGTCACAGCAAGAGAAG+AGG + chr8_1:88403966-88403985 None:intergenic 45.0%
GCATCATCAGCCTGAAGTTT+AGG - chr8_1:88404179-88404198 Msa1223800:intron 45.0%
AGCCTGAAGTTTAGGCAACT+TGG - chr8_1:88404187-88404206 Msa1223800:intron 45.0%
TGCAGAATTGCTCTATGCCT+TGG - chr8_1:88404856-88404875 Msa1223800:CDS 45.0%
GCAGAATTGCTCTATGCCTT+GGG - chr8_1:88404857-88404876 Msa1223800:CDS 45.0%
! ACTTTCCCTTTTGGCCTCAT+CGG + chr8_1:88405135-88405154 None:intergenic 45.0%
GAGGCCAAAAGGGAAAGTTA+AGG - chr8_1:88405137-88405156 Msa1223800:CDS 45.0%
GGGAAAGTTAAGGACAGAAC+TGG - chr8_1:88405147-88405166 Msa1223800:CDS 45.0%
TTGCATGTGAACTCAAGGAC+AGG - chr8_1:88405178-88405197 Msa1223800:CDS 45.0%
TGCACATCCGCTTCAAAAAC+TGG + chr8_1:88405204-88405223 None:intergenic 45.0%
GCTAAAGAGAGGGAAAAGTG+AGG - chr8_1:88405245-88405264 Msa1223800:CDS 45.0%
CGATGATCACCAAAACCATG+AGG + chr8_1:88405288-88405307 None:intergenic 45.0%
CAGGTTCGGAACCATGATGA+TGG + chr8_1:88402003-88402022 None:intergenic 50.0%
!! AGCTTCATGAGGTGCTGTCA+GGG + chr8_1:88402027-88402046 None:intergenic 50.0%
GGGAAGGTTGAAGAGATTGG+AGG + chr8_1:88402082-88402101 None:intergenic 50.0%
GAAATGGGGTTGGGTGAGAA+TGG + chr8_1:88402177-88402196 None:intergenic 50.0%
!!! GGGTTTTGGAGAAATGGGGT+TGG + chr8_1:88402187-88402206 None:intergenic 50.0%
ATTGAGGAGGAGGTTGAGGA+AGG + chr8_1:88402252-88402271 None:intergenic 50.0%
CGATATTGAGGAGGAGGTTG+AGG + chr8_1:88402256-88402275 None:intergenic 50.0%
!! AGAGGTGGTGGACGATATTG+AGG + chr8_1:88402268-88402287 None:intergenic 50.0%
AACCAAGGAGCTTAGGGTAG+AGG + chr8_1:88402286-88402305 None:intergenic 50.0%
CTACCCTAAGCTCCTTGGTT+CGG - chr8_1:88402286-88402305 Msa1223800:three_prime_UTR 50.0%
TCACCGAACCAAGGAGCTTA+GGG + chr8_1:88402292-88402311 None:intergenic 50.0%
TTCACCGAACCAAGGAGCTT+AGG + chr8_1:88402293-88402312 None:intergenic 50.0%
CGCAACTGTGTCTCCATTTC+TGG + chr8_1:88402821-88402840 None:intergenic 50.0%
!! TTTTCAGTACCGAGTCAGCC+AGG - chr8_1:88404693-88404712 Msa1223800:CDS 50.0%
! TTTCAGTACCGAGTCAGCCA+GGG - chr8_1:88404694-88404713 Msa1223800:CDS 50.0%
!! GGACAGGCCAGTTTTTGAAG+CGG - chr8_1:88405194-88405213 Msa1223800:CDS 50.0%
TTGGGGATTACCCTGTTGAG+AGG - chr8_1:88405355-88405374 Msa1223800:CDS 50.0%
GCTTCAAGCACCTCTCAACA+GGG + chr8_1:88405368-88405387 None:intergenic 50.0%
TGCTTCAAGCACCTCTCAAC+AGG + chr8_1:88405369-88405388 None:intergenic 50.0%
!! TGAGAGGTGCTTGAAGCAGA+TGG - chr8_1:88405371-88405390 Msa1223800:CDS 50.0%
!! CAGCTTCATGAGGTGCTGTC+AGG + chr8_1:88402028-88402047 None:intergenic 55.0%
GAATGGCGTGAAGGATAGCG+TGG + chr8_1:88402160-88402179 None:intergenic 55.0%
GTTGGGTGAGAATGGCGTGA+AGG + chr8_1:88402169-88402188 None:intergenic 55.0%
GGCGTAACCGTCGGTGATTA+TGG + chr8_1:88402228-88402247 None:intergenic 55.0%
GGTGGACGATATTGAGGAGG+AGG + chr8_1:88402262-88402281 None:intergenic 55.0%
!! GGTGGTGGACGATATTGAGG+AGG + chr8_1:88402265-88402284 None:intergenic 55.0%
CAAGGAGCTTAGGGTAGAGG+TGG + chr8_1:88402283-88402302 None:intergenic 55.0%
CACCTCTACCCTAAGCTCCT+TGG - chr8_1:88402281-88402300 Msa1223800:three_prime_UTR 55.0%
ATGATTCGCGTCTCGGGGAT+TGG - chr8_1:88402341-88402360 Msa1223800:three_prime_UTR 55.0%
CGTTGAGGCCAATGCGAAAC+TGG - chr8_1:88403060-88403079 Msa1223800:intron 55.0%
CAGCAAGAGAAGAGGGAGGA+GGG + chr8_1:88403958-88403977 None:intergenic 55.0%
ACAGCAAGAGAAGAGGGAGG+AGG + chr8_1:88403959-88403978 None:intergenic 55.0%
GTCACAGCAAGAGAAGAGGG+AGG + chr8_1:88403962-88403981 None:intergenic 55.0%
! GTTTGTTGCCCTGGCTGACT+CGG + chr8_1:88404705-88404724 None:intergenic 55.0%
GAGTCAGCCAGGGCAACAAA+CGG - chr8_1:88404704-88404723 Msa1223800:CDS 55.0%
!! TTGATGCTTGGGCACCGATG+AGG - chr8_1:88405118-88405137 Msa1223800:CDS 55.0%
! GGTGCTGTCAGGGTCAGGTT+CGG + chr8_1:88402017-88402036 None:intergenic 60.0%
!! CATGAGGTGCTGTCAGGGTC+AGG + chr8_1:88402022-88402041 None:intergenic 60.0%
GAGGAAGGTGGCGTAACCGT+CGG + chr8_1:88402237-88402256 None:intergenic 60.0%
GAGGAGGAGGTTGAGGAAGG+TGG + chr8_1:88402249-88402268 None:intergenic 60.0%
GGAGCTTAGGGTAGAGGTGG+TGG + chr8_1:88402280-88402299 None:intergenic 60.0%
GAAGAGGGAGGAGGGTGATG+TGG + chr8_1:88403950-88403969 None:intergenic 60.0%
!! TGGGCACCGATGAGGCCAAA+AGG - chr8_1:88405126-88405145 Msa1223800:CDS 60.0%
!! GGGCACCGATGAGGCCAAAA+GGG - chr8_1:88405127-88405146 Msa1223800:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 88401955 88405656 88401955 ID=Msa1223800;Name=Msa1223800
chr8_1 mRNA 88401955 88405656 88401955 ID=Msa1223800-mRNA-1;Parent=Msa1223800;Name=Msa1223800-mRNA-1;_AED=0.14;_eAED=0.14;_QI=53|1|1|1|1|1|2|925|481
chr8_1 exon 88401955 88402911 88401955 ID=Msa1223800-mRNA-1:exon:32114;Parent=Msa1223800-mRNA-1
chr8_1 exon 88404190 88405656 88404190 ID=Msa1223800-mRNA-1:exon:32113;Parent=Msa1223800-mRNA-1
chr8_1 five_prime_UTR 88405604 88405656 88405604 ID=Msa1223800-mRNA-1:five_prime_utr;Parent=Msa1223800-mRNA-1
chr8_1 CDS 88404190 88405603 88404190 ID=Msa1223800-mRNA-1:cds;Parent=Msa1223800-mRNA-1
chr8_1 CDS 88402880 88402911 88402880 ID=Msa1223800-mRNA-1:cds;Parent=Msa1223800-mRNA-1
chr8_1 three_prime_UTR 88401955 88402879 88401955 ID=Msa1223800-mRNA-1:three_prime_utr;Parent=Msa1223800-mRNA-1
Gene Sequence

>Msa1223800

ATGGTTCCGAACCTGACCCTGACAGCACCTCATGAAGCTGAAAACCAAATCGAAATCTCTCTCAAACAATCCCTCCAATCTCTTCAACCTTCCCTTAAACCACCATTCTCCTTAACCATTCCAAATCCCGATGAATACATTCAACTCAACCACGCTATCCTTCACGCCATTCTCACCCAACCCCATTTCTCCAAAACCCATATCAAACACTTACACGCCATAATCACCGACGGTTACGCCACCTTCCTCAACCTCCTCCTCAATATCGTCCACCACCTCTACCCTAAGCTCCTTGGTTCGGTGAAACATCAACTTATTTGGGTCACCGATGAAATGATTCGCGTCTCGGGGATTGGCTATGATGCTTTATTGATTTCCCTTTTGAGGCAAATTGTTGGTGGTGATTTCAGTGATGATAATTTATGGCTTTGTGAGAAATTGGTGACACTTTTATTGGATAAATGGGATTGTTTATTAGAAGAAGCACCACATGTTTTGTGTAGTGGTTTGTATGTGTTTCTTCGAGTTTTGGCTGATCATTGTAGGGTGAATGGTGATAAGTTTGAGTCTTTGAAGCGTTTGGAGGTTCATTTCTGTGTGAAGATAGTGAGGGAAGAGTTTCATTTATGTTTGAAAATTGGGAGGGATTTTATTCGGTTGTTGCAGGATTTGGTTCATGTTCCTGAATTTAAGTCTATATGGAAGGATTTAAAGCTGAACCCATCTAGTTTTAATACTTTAGGATTTAGCGGTGTTTCTCAGATTTATTTAACTAGGACTTCGAGTAGGTATGCTTTGCTTAGGATCACTCCAGAAATGGAGACACAGTTGCGGTTTTTGCTTACTCATGTGAAATTGGGGCATCAAAAGAGGCATTTGATGTGGTTTGCTAGGAAATTTTTGAACGAGCCTGATAAAGAGACTGTTGTAGTTGATATAGTTAGGTTTATATGCTGTGCACACCATCCACCGAACGAGATTATTCAGTCTGATATAGTTCCTAGATGGGCTGTTATTGGTTGGCTTTTGACAACTTTTAGGAAGAAGAGTTACGTTGAGGCCAATGCGAAACTGGCTTTGTTTTATGATTGGCTCTTTTTTGATGAAAAGGTTGTTAATATTATGAACATAGAACCTGCTATTTTGTTGATGGTGCATTCTATTACCCAATACGTGGAGATGACCAACACTCTTCTTGAGTTTTTGTTACTTCTTGTGGACAACTATGATATGGAACACAAGGATATGATTGTTAAAGGTGTCTCATTGGCTTTTCGATTTCTTGAAAGCAAAGGTGTGATTCAGTCGCTTGATATTTTGACTTCTTGTCCTACATTGTCCCCTTCACTAAAAGAGGGATTGAGTAGGCTATTATCATCTGCAAAGCCTGAATGCTCTAAAGAATTTCTTCCAGTACCGAGTCAGCCAGGGCAACAAACGGTATAA
Protein sequence

>Msa1223800

MVPNLTLTAPHEAENQIEISLKQSLQSLQPSLKPPFSLTIPNPDEYIQLNHAILHAILTQPHFSKTHIKHLHAIITDGYATFLNLLLNIVHHLYPKLLGSVKHQLIWVTDEMIRVSGIGYDALLISLLRQIVGGDFSDDNLWLCEKLVTLLLDKWDCLLEEAPHVLCSGLYVFLRVLADHCRVNGDKFESLKRLEVHFCVKIVREEFHLCLKIGRDFIRLLQDLVHVPEFKSIWKDLKLNPSSFNTLGFSGVSQIYLTRTSSRYALLRITPEMETQLRFLLTHVKLGHQKRHLMWFARKFLNEPDKETVVVDIVRFICCAHHPPNEIIQSDIVPRWAVIGWLLTTFRKKSYVEANAKLALFYDWLFFDEKVVNIMNIEPAILLMVHSITQYVEMTNTLLEFLLLLVDNYDMEHKDMIVKGVSLAFRFLESKGVIQSLDILTSCPTLSPSLKEGLSRLLSSAKPECSKEFLPVPSQPGQQTV*