Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224590 | sp|Q7TPD0|INT3_MOUSE | 35.922 | 412 | 259 | 4 | 43 | 454 | 82 | 488 | 4.57e-88 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224590 | G7JKH2 | 89.516 | 620 | 18 | 1 | 1 | 573 | 1 | 620 | 0.0 | 1116 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa1224590 | 0.800571 | 1.354242e-48 | -8.615850e-47 |
| Msa0027770 | Msa1224590 | 0.807981 | 3.875538e-50 | -8.615850e-47 |
| Msa0029240 | Msa1224590 | 0.805922 | 1.056172e-49 | -8.615850e-47 |
| Msa0063530 | Msa1224590 | 0.821107 | 4.812677e-53 | -8.615850e-47 |
| Msa0075500 | Msa1224590 | 0.823845 | 1.112026e-53 | -8.615850e-47 |
| Msa0091560 | Msa1224590 | 0.814299 | 1.653962e-51 | -8.615850e-47 |
| Msa0105620 | Msa1224590 | 0.806981 | 6.315515e-50 | -8.615850e-47 |
| Msa0115400 | Msa1224590 | 0.809014 | 2.332543e-50 | -8.615850e-47 |
| Msa0118590 | Msa1224590 | 0.801526 | 8.635754e-49 | -8.615850e-47 |
| Msa0625720 | Msa1224590 | 0.812091 | 5.046631e-51 | -8.615850e-47 |
| Msa0685140 | Msa1224590 | 0.821987 | 3.014206e-53 | -8.615850e-47 |
| Msa0702550 | Msa1224590 | 0.803379 | 3.584757e-49 | -8.615850e-47 |
| Msa0127020 | Msa1224590 | 0.837716 | 4.410394e-57 | -8.615850e-47 |
| Msa0159170 | Msa1224590 | 0.805786 | 1.128313e-49 | -8.615850e-47 |
| Msa0168230 | Msa1224590 | 0.837324 | 5.557936e-57 | -8.615850e-47 |
| Msa0169280 | Msa1224590 | 0.838801 | 2.317426e-57 | -8.615850e-47 |
| Msa0179190 | Msa1224590 | 0.805788 | 1.127376e-49 | -8.615850e-47 |
| Msa0223160 | Msa1224590 | 0.814314 | 1.640726e-51 | -8.615850e-47 |
| Msa1224590 | Msa1231840 | 0.807034 | 6.155015e-50 | -8.615850e-47 |
| Msa1224590 | Msa1237700 | 0.803509 | 3.369102e-49 | -8.615850e-47 |
| Msa1224590 | Msa1245930 | 0.846389 | 2.240493e-59 | -8.615850e-47 |
| Msa1224590 | Msa1259060 | 0.854873 | 9.209406e-62 | -8.615850e-47 |
| Msa1224590 | Msa1312520 | 0.815348 | 9.680983e-52 | -8.615850e-47 |
| Msa1224590 | Msa1368360 | 0.801319 | 9.523827e-49 | -8.615850e-47 |
| Msa1224590 | Msa1400580 | 0.853873 | 1.791927e-61 | -8.615850e-47 |
| Msa1224590 | Msa1411750 | 0.836058 | 1.168773e-56 | -8.615850e-47 |
| Msa1224590 | Msa1419870 | 0.802042 | 6.766628e-49 | -8.615850e-47 |
| Msa0388700 | Msa1224590 | 0.806851 | 6.729106e-50 | -8.615850e-47 |
| Msa0481530 | Msa1224590 | 0.800869 | 1.177351e-48 | -8.615850e-47 |
| Msa0482130 | Msa1224590 | 0.814817 | 1.270226e-51 | -8.615850e-47 |
| Msa1009820 | Msa1224590 | 0.816220 | 6.187641e-52 | -8.615850e-47 |
| Msa1051200 | Msa1224590 | 0.803332 | 3.666392e-49 | -8.615850e-47 |
| Msa0241470 | Msa1224590 | 0.833292 | 5.799017e-56 | -8.615850e-47 |
| Msa0253200 | Msa1224590 | 0.816598 | 5.092851e-52 | -8.615850e-47 |
| Msa0279220 | Msa1224590 | 0.810726 | 9.989514e-51 | -8.615850e-47 |
| Msa0279240 | Msa1224590 | 0.816054 | 6.737612e-52 | -8.615850e-47 |
| Msa0292030 | Msa1224590 | 0.819238 | 1.290105e-52 | -8.615850e-47 |
| Msa0302530 | Msa1224590 | 0.803384 | 3.576628e-49 | -8.615850e-47 |
| Msa0318980 | Msa1224590 | 0.802031 | 6.802441e-49 | -8.615850e-47 |
| Msa0330310 | Msa1224590 | 0.824084 | 9.777443e-54 | -8.615850e-47 |
| Msa0339700 | Msa1224590 | 0.813088 | 3.054371e-51 | -8.615850e-47 |
| Msa1128570 | Msa1224590 | 0.823625 | 1.252225e-53 | -8.615850e-47 |
| Msa1160590 | Msa1224590 | 0.814191 | 1.747348e-51 | -8.615850e-47 |
| Msa1180500 | Msa1224590 | 0.816955 | 4.233557e-52 | -8.615850e-47 |
| Msa1181250 | Msa1224590 | 0.815872 | 7.398766e-52 | -8.615850e-47 |
| Msa1181330 | Msa1224590 | 0.816441 | 5.520365e-52 | -8.615850e-47 |
| Msa1208880 | Msa1224590 | 0.833113 | 6.425848e-56 | -8.615850e-47 |
| Msa1209760 | Msa1224590 | 0.819353 | 1.214446e-52 | -8.615850e-47 |
| Msa1223800 | Msa1224590 | 0.813638 | 2.312626e-51 | -8.615850e-47 |
| Msa0529890 | Msa1224590 | 0.813800 | 2.131089e-51 | -8.615850e-47 |
| Msa0542090 | Msa1224590 | 0.829967 | 3.826755e-55 | -8.615850e-47 |
| Msa0542130 | Msa1224590 | 0.827447 | 1.556847e-54 | -8.615850e-47 |
| Msa0585560 | Msa1224590 | 0.812150 | 4.900338e-51 | -8.615850e-47 |
| Msa0945440 | Msa1224590 | 0.819472 | 1.140835e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224590 | MtrunA17_Chr4g0075581 | 97.665 | 471 | 11 | 0 | 1 | 471 | 1 | 471 | 0.0 | 934 |
| Msa1224590 | MtrunA17_Chr7g0269221 | 37.063 | 143 | 63 | 6 | 436 | 573 | 287 | 407 | 3.92e-15 | 78.2 |
| Msa1224590 | MtrunA17_Chr4g0067341 | 88.889 | 36 | 4 | 0 | 538 | 573 | 360 | 395 | 6.96e-15 | 77.4 |
| Msa1224590 | MtrunA17_Chr4g0061061 | 64.103 | 39 | 14 | 0 | 535 | 573 | 353 | 391 | 9.36e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224590 | AT4G14590.1 | 56.798 | 456 | 171 | 3 | 11 | 465 | 16 | 446 | 6.67e-177 | 510 |
| Msa1224590 | AT3G62720.2 | 36.364 | 143 | 64 | 6 | 436 | 573 | 280 | 400 | 1.44e-15 | 79.7 |
| Msa1224590 | AT3G62720.1 | 36.364 | 143 | 64 | 6 | 436 | 573 | 280 | 400 | 1.44e-15 | 79.7 |
| Msa1224590 | AT4G02500.1 | 86.111 | 36 | 5 | 0 | 538 | 573 | 366 | 401 | 5.37e-14 | 75.1 |
Find 143 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGAAACATCAACTTATT+TGG | 0.070670 | 8_1:+89644428 | Msa1224590:CDS |
| CGCAACTGTGTCTCCATTTC+TGG | 0.098968 | 8_1:-89644940 | None:intergenic |
| TGTAAACCTTCTGGGAAATT+TGG | 0.134778 | 8_1:+89647357 | Msa1224590:CDS |
| TTTCATTTATGTTTGAAAAT+TGG | 0.160887 | 8_1:+89644748 | Msa1224590:CDS |
| TTTGCTTACTCATGTGAAAT+TGG | 0.188512 | 8_1:+89644966 | Msa1224590:CDS |
| ATTTCAGTGATGATAATTTA+TGG | 0.209364 | 8_1:+89644533 | Msa1224590:CDS |
| TTAAGGAGAATGGTGGTTTA+AGG | 0.210892 | 8_1:-89644222 | None:intergenic |
| GTAAACCTTCTGGGAAATTT+GGG | 0.248874 | 8_1:+89647358 | Msa1224590:CDS |
| TTCATTTATGTTTGAAAATT+GGG | 0.254201 | 8_1:+89644749 | Msa1224590:CDS |
| AGAAATTCTTTAGAGCTTTC+AGG | 0.254646 | 8_1:-89645516 | None:intergenic |
| TTTGAGAGTTGTAAACCTTC+TGG | 0.256570 | 8_1:+89647348 | Msa1224590:CDS |
| TTTATGGCTTTGTGAGAAAT+TGG | 0.284235 | 8_1:+89644549 | Msa1224590:CDS |
| CCTAAAGTATTAAAACTAGA+TGG | 0.289798 | 8_1:-89644850 | None:intergenic |
| CTGTCCTTAACTTTCCCTTT+TGG | 0.292299 | 8_1:-89647161 | None:intergenic |
| GTATGTGTTTCTTCGAGTTT+TGG | 0.298933 | 8_1:+89644639 | Msa1224590:CDS |
| TATTCGGTTGTTGCAGGATT+TGG | 0.298936 | 8_1:+89644780 | Msa1224590:CDS |
| GTTCCTAGATGGGCTGTTAT+TGG | 0.301065 | 8_1:+89645126 | Msa1224590:CDS |
| TTCCTGAATTTAAGTCTATA+TGG | 0.303051 | 8_1:+89644809 | Msa1224590:CDS |
| GAGGGAAAAGTGAGGTGTTT+TGG | 0.305748 | 8_1:+89647274 | Msa1224590:CDS |
| TGGCGTGTAAGTGTTTGATA+TGG | 0.312387 | 8_1:-89644327 | None:intergenic |
| TTGAAACATCCTCCTGGTTT+TGG | 0.312793 | 8_1:+89647297 | Msa1224590:CDS |
| CAGCTTCATGAGGTGCTGTC+AGG | 0.320098 | 8_1:-89644147 | None:intergenic |
| CATAAGGATATCATTGTTAA+AGG | 0.326625 | 8_1:+89645366 | Msa1224590:CDS |
| TGCTTCAAGCATCTCTCAAC+AGG | 0.330712 | 8_1:-89647387 | None:intergenic |
| TTGCTTACTCATGTGAAATT+GGG | 0.331574 | 8_1:+89644967 | Msa1224590:CDS |
| GGTGAAACATCAACTTATTT+GGG | 0.332157 | 8_1:+89644429 | Msa1224590:CDS |
| TGAATGTATTCATCGGGATT+TGG | 0.333951 | 8_1:-89644250 | None:intergenic |
| TCTTGTGGACAACTATGATA+TGG | 0.338106 | 8_1:+89645341 | Msa1224590:CDS |
| ATCATAAAACAAAGCCAGTT+TGG | 0.343070 | 8_1:-89645196 | None:intergenic |
| GTTTGAGTCTTTGAAGCGTT+TGG | 0.343614 | 8_1:+89644690 | Msa1224590:CDS |
| TAAGGGAAGGTTGAAGAGAT+TGG | 0.345643 | 8_1:-89644204 | None:intergenic |
| GTCTGTCACAGTTTATTTGT+TGG | 0.352141 | 8_1:+89647244 | Msa1224590:CDS |
| ATTGGATATTCTTGATGCTT+GGG | 0.353018 | 8_1:+89647127 | Msa1224590:CDS |
| TTCCATATAGACTTAAATTC+AGG | 0.357152 | 8_1:-89644811 | None:intergenic |
| CACCAACAATTTGCCTCAAA+AGG | 0.368885 | 8_1:-89644507 | None:intergenic |
| AGTCTGATATAGTTCCTAGA+TGG | 0.373472 | 8_1:+89645115 | Msa1224590:CDS |
| TGTTGGTCATCTCCACATAT+TGG | 0.374229 | 8_1:-89645296 | None:intergenic |
| ATCGGGATTTGGAATGGTTA+AGG | 0.374354 | 8_1:-89644239 | None:intergenic |
| TTTAATACTTTAGGATTTAG+TGG | 0.375338 | 8_1:+89644859 | Msa1224590:CDS |
| CATTGGATATTCTTGATGCT+TGG | 0.377065 | 8_1:+89647126 | Msa1224590:CDS |
| CGTTGAGGCCAATGCCAAAC+TGG | 0.377729 | 8_1:+89645182 | Msa1224590:CDS |
| TTGAGAGTTGTAAACCTTCT+GGG | 0.383130 | 8_1:+89647349 | Msa1224590:CDS |
| CGATATTGAGGAGGAGGTTG+AGG | 0.384212 | 8_1:-89644375 | None:intergenic |
| TAAGGAGAATGGTGGTTTAA+GGG | 0.384677 | 8_1:-89644221 | None:intergenic |
| AGCTCTAAAGAATTTCTTCC+AGG | 0.386230 | 8_1:+89645522 | Msa1224590:CDS |
| CTTGATGCTTGGGCACCAAT+GGG | 0.387314 | 8_1:+89647137 | Msa1224590:CDS |
| TAAGTGTTTGATATGGGTTT+TGG | 0.387861 | 8_1:-89644320 | None:intergenic |
| ACTACAACAGTCTCTTTATC+AGG | 0.391900 | 8_1:-89645039 | None:intergenic |
| GGGAAAGTTAAGGACAGAAC+TGG | 0.395012 | 8_1:+89647167 | Msa1224590:CDS |
| CTGTTGTAGTTGATATAGTT+AGG | 0.396258 | 8_1:+89645052 | Msa1224590:CDS |
| ATGATTCGCGTCTCGGGGAT+TGG | 0.405415 | 8_1:+89644463 | Msa1224590:CDS |
| TGGGCACCAATGGGGCCAAA+AGG | 0.407099 | 8_1:+89647146 | Msa1224590:CDS |
| GCTTAGGATCACTCCAGAAA+TGG | 0.419281 | 8_1:+89644927 | Msa1224590:CDS |
| CATTGTTAAAGGTGTCTCAT+TGG | 0.422377 | 8_1:+89645377 | Msa1224590:CDS |
| GTTGGTCATCTCCACATATT+GGG | 0.422883 | 8_1:-89645295 | None:intergenic |
| CAACTATGATATGGAACATA+AGG | 0.423757 | 8_1:+89645350 | Msa1224590:CDS |
| CATGAGGTGCTGTCAGGGTC+AGG | 0.427725 | 8_1:-89644141 | None:intergenic |
| CTAGATGGGCTGTTATTGGT+TGG | 0.429296 | 8_1:+89645130 | Msa1224590:CDS |
| GGCGTAACCGTCGGTGATTA+TGG | 0.432609 | 8_1:-89644347 | None:intergenic |
| TTCACCGAACCAAGGAGCTT+AGG | 0.436137 | 8_1:-89644412 | None:intergenic |
| GTTTGAGAGAGATTTCGATT+TGG | 0.436427 | 8_1:-89644174 | None:intergenic |
| CACCTCTACCCTAAGCTCCT+TGG | 0.438635 | 8_1:+89644403 | Msa1224590:CDS |
| TTTGGAATGGTTAAGGAGAA+TGG | 0.444668 | 8_1:-89644232 | None:intergenic |
| GATGAAATGATTCGCGTCTC+GGG | 0.452056 | 8_1:+89644457 | Msa1224590:CDS |
| TCTTGATGCTTGGGCACCAA+TGG | 0.454394 | 8_1:+89647136 | Msa1224590:CDS |
| TCACCGAACCAAGGAGCTTA+GGG | 0.454863 | 8_1:-89644411 | None:intergenic |
| CGAGTAGGTATGCTTTGCTT+AGG | 0.455189 | 8_1:+89644911 | Msa1224590:CDS |
| TTGAGTTGAATGTATTCATC+GGG | 0.458483 | 8_1:-89644256 | None:intergenic |
| CGATGAAATGATTCGCGTCT+CGG | 0.465844 | 8_1:+89644456 | Msa1224590:CDS |
| CTACCCTAAGCTCCTTGGTT+CGG | 0.475301 | 8_1:+89644408 | Msa1224590:CDS |
| GAGGAATTGTCAATGGTCAT+TGG | 0.482408 | 8_1:+89647109 | Msa1224590:intron |
| AAACAAAGCCAGTTTGGCAT+TGG | 0.483784 | 8_1:-89645190 | None:intergenic |
| GAAATGGGGTTGGGTGAGAA+TGG | 0.487022 | 8_1:-89644296 | None:intergenic |
| GGAAGGTTGAAGAGATTGGA+GGG | 0.487934 | 8_1:-89644200 | None:intergenic |
| TTGAGTAGGCTATTATCATC+TGG | 0.488482 | 8_1:+89645489 | Msa1224590:CDS |
| AGAGGTGGTGGACGATATTG+AGG | 0.489507 | 8_1:-89644387 | None:intergenic |
| AGCTTCATGAGGTGCTGTCA+GGG | 0.494004 | 8_1:-89644146 | None:intergenic |
| TTTAGTGAAGGGGACAATGT+AGG | 0.502732 | 8_1:-89645459 | None:intergenic |
| ATTGTCCCCTTCACTAAAAG+AGG | 0.504227 | 8_1:+89645464 | Msa1224590:CDS |
| GAATAATCTCGTTCGGTGGA+TGG | 0.504819 | 8_1:-89645092 | None:intergenic |
| GGCATTTGATGTGGTTTGCT+AGG | 0.507728 | 8_1:+89645001 | Msa1224590:CDS |
| ATTGAGGAGGAGGTTGAGGA+AGG | 0.508535 | 8_1:-89644371 | None:intergenic |
| TCAGACTGAATAATCTCGTT+CGG | 0.510418 | 8_1:-89645099 | None:intergenic |
| GGGAAGGTTGAAGAGATTGG+AGG | 0.512263 | 8_1:-89644201 | None:intergenic |
| AACCAAGGAGCTTAGGGTAG+AGG | 0.517188 | 8_1:-89644405 | None:intergenic |
| GGAGCTTAGGGTAGAGGTGG+TGG | 0.517887 | 8_1:-89644399 | None:intergenic |
| TGCTTACTCATGTGAAATTG+GGG | 0.519131 | 8_1:+89644968 | Msa1224590:CDS |
| GCTGATCATTGTAGGGTGAA+TGG | 0.520278 | 8_1:+89644661 | Msa1224590:CDS |
| TTTCTCAGATTTATTTAACT+AGG | 0.520412 | 8_1:+89644884 | Msa1224590:CDS |
| CAACCAATAACAGCCCATCT+AGG | 0.521491 | 8_1:-89645129 | None:intergenic |
| ACCAACAATTTGCCTCAAAA+GGG | 0.521729 | 8_1:-89644506 | None:intergenic |
| GGCGTGTAAGTGTTTGATAT+GGG | 0.523661 | 8_1:-89644326 | None:intergenic |
| GGTGGACGATATTGAGGAGG+AGG | 0.529438 | 8_1:-89644381 | None:intergenic |
| TGAGAGATGCTTGAAGCAGA+TGG | 0.532481 | 8_1:+89647392 | Msa1224590:CDS |
| CTAAAGTATTAAAACTAGAT+GGG | 0.533260 | 8_1:-89644849 | None:intergenic |
| GCATTCTATCACCCAATATG+TGG | 0.534310 | 8_1:+89645284 | Msa1224590:CDS |
| TGAGTCTTTGAAGCGTTTGG+AGG | 0.535228 | 8_1:+89644693 | Msa1224590:CDS |
| GAGGAGGAGGTTGAGGAAGG+TGG | 0.536363 | 8_1:-89644368 | None:intergenic |
| TGAATTTAAGTCTATATGGA+AGG | 0.538174 | 8_1:+89644813 | Msa1224590:CDS |
| TGCACCATCAACAAAATAGC+AGG | 0.538696 | 8_1:-89645264 | None:intergenic |
| GAGAATGGTGGTTTAAGGGA+AGG | 0.539834 | 8_1:-89644217 | None:intergenic |
| GGGCACCAATGGGGCCAAAA+GGG | 0.545446 | 8_1:+89647147 | Msa1224590:CDS |
| GTTGAGTTGAATGTATTCAT+CGG | 0.545569 | 8_1:-89644257 | None:intergenic |
| GGTGCTGTCAGGGTCAGGTT+CGG | 0.546218 | 8_1:-89644136 | None:intergenic |
| GTATTCATCGGGATTTGGAA+TGG | 0.547263 | 8_1:-89644245 | None:intergenic |
| TTTATTTGTTGGCTAAAGAG+AGG | 0.554603 | 8_1:+89647255 | Msa1224590:CDS |
| AATACTTGCATGTGAACTCA+AGG | 0.556834 | 8_1:+89647193 | Msa1224590:CDS |
| TGAAATTGGGGCATCAAAAG+AGG | 0.557265 | 8_1:+89644980 | Msa1224590:CDS |
| TTATTTGTTGGCTAAAGAGA+GGG | 0.558414 | 8_1:+89647256 | Msa1224590:CDS |
| TAATCCCCAAATTTCCCAGA+AGG | 0.559142 | 8_1:-89647363 | None:intergenic |
| TTTATGTTTGAAAATTGGGA+GGG | 0.560716 | 8_1:+89644753 | Msa1224590:CDS |
| TTTCGATTTCTTGAAAGCAA+AGG | 0.563601 | 8_1:+89645402 | Msa1224590:CDS |
| ATGAAATGATTCGCGTCTCG+GGG | 0.570789 | 8_1:+89644458 | Msa1224590:CDS |
| GGGGCCAAAAGGGAAAGTTA+AGG | 0.571105 | 8_1:+89647157 | Msa1224590:CDS |
| CACCGATGATCACCAAAACC+AGG | 0.573763 | 8_1:-89647309 | None:intergenic |
| ATCAAAAGAGGCATTTGATG+TGG | 0.574765 | 8_1:+89644992 | Msa1224590:CDS |
| ATTTATGTTTGAAAATTGGG+AGG | 0.576348 | 8_1:+89644752 | Msa1224590:CDS |
| GTCTGATATAGTTCCTAGAT+GGG | 0.576556 | 8_1:+89645116 | Msa1224590:CDS |
| GTTGGGTGAGAATGGCGTGA+AGG | 0.583675 | 8_1:-89644288 | None:intergenic |
| TAAACCTTCTGGGAAATTTG+GGG | 0.584591 | 8_1:+89647359 | Msa1224590:CDS |
| ATTTCTGTGTGAAGATAGTG+AGG | 0.595600 | 8_1:+89644719 | Msa1224590:CDS |
| GGAAAGTTAAGGACAGAACT+GGG | 0.599987 | 8_1:+89647168 | Msa1224590:CDS |
| TTGCATGTGAACTCAAGGAT+AGG | 0.601616 | 8_1:+89647198 | Msa1224590:CDS |
| GGTGGTGGACGATATTGAGG+AGG | 0.601801 | 8_1:-89644384 | None:intergenic |
| TTGTCCCCTTCACTAAAAGA+GGG | 0.609008 | 8_1:+89645465 | Msa1224590:CDS |
| CAAGGAGCTTAGGGTAGAGG+TGG | 0.611596 | 8_1:-89644402 | None:intergenic |
| GACTGAATAATCTCGTTCGG+TGG | 0.612467 | 8_1:-89645096 | None:intergenic |
| GGAATGGTTAAGGAGAATGG+TGG | 0.620887 | 8_1:-89644229 | None:intergenic |
| GAGGAAGGTGGCGTAACCGT+CGG | 0.622799 | 8_1:-89644356 | None:intergenic |
| ATTTAACTAGGACTTCGAGT+AGG | 0.626493 | 8_1:+89644896 | Msa1224590:CDS |
| CGAGACGCGAATCATTTCAT+CGG | 0.628582 | 8_1:-89644455 | None:intergenic |
| CACTAAAAGAGGGATTGAGT+AGG | 0.637046 | 8_1:+89645475 | Msa1224590:CDS |
| TAGGAAGAAGAGTTACGTTG+AGG | 0.637935 | 8_1:+89645167 | Msa1224590:CDS |
| GTTGATGTTTCACCGAACCA+AGG | 0.650917 | 8_1:-89644420 | None:intergenic |
| CAGAAATGGAGACACAGTTG+CGG | 0.652784 | 8_1:+89644941 | Msa1224590:CDS |
| TTGATGCTTGGGCACCAATG+GGG | 0.668803 | 8_1:+89647138 | Msa1224590:CDS |
| GCTAAAGAGAGGGAAAAGTG+AGG | 0.681796 | 8_1:+89647266 | Msa1224590:CDS |
| AAACCACTACACAAAACATG+TGG | 0.683700 | 8_1:-89644616 | None:intergenic |
| TTTCTGTGTGAAGATAGTGA+GGG | 0.713281 | 8_1:+89644720 | Msa1224590:CDS |
| TTACACGCCATAATCACCGA+CGG | 0.716397 | 8_1:+89644340 | Msa1224590:CDS |
| GCTTCAAGCATCTCTCAACA+GGG | 0.726539 | 8_1:-89647386 | None:intergenic |
| GAATGGCGTGAAGGATAGCG+TGG | 0.737315 | 8_1:-89644279 | None:intergenic |
| CGATGATCACCAAAACCAGG+AGG | 0.748263 | 8_1:-89647306 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCTAAATTAAAAATAA+TGG | - | chr8_1:89646376-89646395 | None:intergenic | 10.0% |
| !!! | TATTTTTAATTTAGAATTGA+TGG | + | chr8_1:89646377-89646396 | Msa1224590:intron | 10.0% |
| !! | TTTCATTTATGTTTGAAAAT+TGG | + | chr8_1:89644748-89644767 | Msa1224590:CDS | 15.0% |
| !! | TTCATTTATGTTTGAAAATT+GGG | + | chr8_1:89644749-89644768 | Msa1224590:CDS | 15.0% |
| !! | ATCAAAATACAAAAAAGAAA+TGG | - | chr8_1:89646645-89646664 | None:intergenic | 15.0% |
| !! | ATTTCAGTGATGATAATTTA+TGG | + | chr8_1:89644533-89644552 | Msa1224590:CDS | 20.0% |
| !!! | CTAAAGTATTAAAACTAGAT+GGG | - | chr8_1:89644852-89644871 | None:intergenic | 20.0% |
| !!! | TTTAATACTTTAGGATTTAG+TGG | + | chr8_1:89644859-89644878 | Msa1224590:CDS | 20.0% |
| !! | TTTCTCAGATTTATTTAACT+AGG | + | chr8_1:89644884-89644903 | Msa1224590:CDS | 20.0% |
| !! | TTTGTCTTTAACCTAAATTA+AGG | + | chr8_1:89645585-89645604 | Msa1224590:intron | 20.0% |
| !! | ACTTGAATCTATATAAGAAA+GGG | - | chr8_1:89645663-89645682 | None:intergenic | 20.0% |
| !!! | AAAACTGAAATCTATTTTCA+GGG | - | chr8_1:89646012-89646031 | None:intergenic | 20.0% |
| !!! | TAAAACTGAAATCTATTTTC+AGG | - | chr8_1:89646013-89646032 | None:intergenic | 20.0% |
| !!! | AGTTTTATTTCATATTCTAC+TGG | + | chr8_1:89646026-89646045 | Msa1224590:intron | 20.0% |
| !!! | AAAAGTAGCTTTATAATGTT+GGG | - | chr8_1:89646201-89646220 | None:intergenic | 20.0% |
| !!! | AAAAAGTAGCTTTATAATGT+TGG | - | chr8_1:89646202-89646221 | None:intergenic | 20.0% |
| !!! | GATGGATATTTTTGAAATAT+AGG | + | chr8_1:89646395-89646414 | Msa1224590:intron | 20.0% |
| !!! | CATTTTGTTCTTTATTTGAT+TGG | + | chr8_1:89646674-89646693 | Msa1224590:intron | 20.0% |
| !! | GCTCATTATTTATTGAAAAA+TGG | - | chr8_1:89646793-89646812 | None:intergenic | 20.0% |
| !! | TTCAATAAATAATGAGCTTA+AGG | + | chr8_1:89646796-89646815 | Msa1224590:intron | 20.0% |
| !! | TGACACTTTTATTGGATAAA+TGG | + | chr8_1:89644572-89644591 | Msa1224590:CDS | 25.0% |
| !! | GACACTTTTATTGGATAAAT+GGG | + | chr8_1:89644573-89644592 | Msa1224590:CDS | 25.0% |
| ! | ATTTATGTTTGAAAATTGGG+AGG | + | chr8_1:89644752-89644771 | Msa1224590:CDS | 25.0% |
| ! | TTTATGTTTGAAAATTGGGA+GGG | + | chr8_1:89644753-89644772 | Msa1224590:CDS | 25.0% |
| ! | TTCCTGAATTTAAGTCTATA+TGG | + | chr8_1:89644809-89644828 | Msa1224590:CDS | 25.0% |
| ! | TTCCATATAGACTTAAATTC+AGG | - | chr8_1:89644814-89644833 | None:intergenic | 25.0% |
| ! | TGAATTTAAGTCTATATGGA+AGG | + | chr8_1:89644813-89644832 | Msa1224590:CDS | 25.0% |
| !! | CCTAAAGTATTAAAACTAGA+TGG | - | chr8_1:89644853-89644872 | None:intergenic | 25.0% |
| !!! | CCATCTAGTTTTAATACTTT+AGG | + | chr8_1:89644850-89644869 | Msa1224590:CDS | 25.0% |
| ! | CATAAGGATATCATTGTTAA+AGG | + | chr8_1:89645366-89645385 | Msa1224590:CDS | 25.0% |
| ! | GACAAATTTAAGAAACTTGA+AGG | - | chr8_1:89645571-89645590 | None:intergenic | 25.0% |
| ! | ATTCTTAGCTACCTTAATTT+AGG | - | chr8_1:89645599-89645618 | None:intergenic | 25.0% |
| ! | TTGAATCTATATAAGAAAGG+GGG | - | chr8_1:89645661-89645680 | None:intergenic | 25.0% |
| ! | CTTGAATCTATATAAGAAAG+GGG | - | chr8_1:89645662-89645681 | None:intergenic | 25.0% |
| ! | CACTTGAATCTATATAAGAA+AGG | - | chr8_1:89645664-89645683 | None:intergenic | 25.0% |
| ! | ATTTCTTAACAAAAGACCAA+AGG | - | chr8_1:89645757-89645776 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTTTGTTAAGAAA+TGG | + | chr8_1:89645756-89645775 | Msa1224590:intron | 25.0% |
| ! | AGAACAATAATCTGGATAAA+AGG | - | chr8_1:89645979-89645998 | None:intergenic | 25.0% |
| !! | TATCTAGAAATAATTTTGCC+TGG | + | chr8_1:89646493-89646512 | Msa1224590:intron | 25.0% |
| !!! | AGTTCTGTAAAAGCTTTAAA+AGG | - | chr8_1:89646616-89646635 | None:intergenic | 25.0% |
| !! | AAGATAAGAAAATGCTACTT+TGG | + | chr8_1:89646847-89646866 | Msa1224590:intron | 25.0% |
| ! | ATTTGTATAGATTGTAACTG+TGG | + | chr8_1:89647063-89647082 | Msa1224590:intron | 25.0% |
| ! | TTTGTATAGATTGTAACTGT+GGG | + | chr8_1:89647064-89647083 | Msa1224590:intron | 25.0% |
| !! | TTGAGTTGAATGTATTCATC+GGG | - | chr8_1:89644259-89644278 | None:intergenic | 30.0% |
| !! | GTTGAGTTGAATGTATTCAT+CGG | - | chr8_1:89644260-89644279 | None:intergenic | 30.0% |
| ! | TAAGTGTTTGATATGGGTTT+TGG | - | chr8_1:89644323-89644342 | None:intergenic | 30.0% |
| GGTGAAACATCAACTTATTT+GGG | + | chr8_1:89644429-89644448 | Msa1224590:CDS | 30.0% | |
| !!! | CTTTATTGATTTCCCTTTTG+AGG | + | chr8_1:89644494-89644513 | Msa1224590:CDS | 30.0% |
| !! | TTTATGGCTTTGTGAGAAAT+TGG | + | chr8_1:89644549-89644568 | Msa1224590:CDS | 30.0% |
| !! | GAAATTGGTGACACTTTTAT+TGG | + | chr8_1:89644564-89644583 | Msa1224590:CDS | 30.0% |
| ! | AAATTGGGAGGGATTTTATT+CGG | + | chr8_1:89644764-89644783 | Msa1224590:CDS | 30.0% |
| TTTGCTTACTCATGTGAAAT+TGG | + | chr8_1:89644966-89644985 | Msa1224590:CDS | 30.0% | |
| TTGCTTACTCATGTGAAATT+GGG | + | chr8_1:89644967-89644986 | Msa1224590:CDS | 30.0% | |
| ! | CTGTTGTAGTTGATATAGTT+AGG | + | chr8_1:89645052-89645071 | Msa1224590:CDS | 30.0% |
| ATCATAAAACAAAGCCAGTT+TGG | - | chr8_1:89645199-89645218 | None:intergenic | 30.0% | |
| !!! | AACTGGCTTTGTTTTATGAT+TGG | + | chr8_1:89645199-89645218 | Msa1224590:CDS | 30.0% |
| !!! | TTGGCTCTTTTTTGATGAAA+AGG | + | chr8_1:89645218-89645237 | Msa1224590:CDS | 30.0% |
| !! | TGAGTTTTTGTTACTTCTTG+TGG | + | chr8_1:89645326-89645345 | Msa1224590:CDS | 30.0% |
| CAACTATGATATGGAACATA+AGG | + | chr8_1:89645350-89645369 | Msa1224590:CDS | 30.0% | |
| TTTCGATTTCTTGAAAGCAA+AGG | + | chr8_1:89645402-89645421 | Msa1224590:CDS | 30.0% | |
| !! | AGAAATTCTTTAGAGCTTTC+AGG | - | chr8_1:89645519-89645538 | None:intergenic | 30.0% |
| AAGGTAGCTAAGAATGTTAT+AGG | + | chr8_1:89645604-89645623 | Msa1224590:intron | 30.0% | |
| ! | AGAATGTTATAGGAGTATGT+AGG | + | chr8_1:89645614-89645633 | Msa1224590:intron | 30.0% |
| GCTATATATACATGTGCTAA+TGG | - | chr8_1:89645714-89645733 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTGCATTTCCTT+TGG | + | chr8_1:89645738-89645757 | Msa1224590:intron | 30.0% |
| TTAAGAAATGGCTGTTTAGT+TGG | + | chr8_1:89645768-89645787 | Msa1224590:intron | 30.0% | |
| TAAGAAATGGCTGTTTAGTT+GGG | + | chr8_1:89645769-89645788 | Msa1224590:intron | 30.0% | |
| !!! | ACCAAATGCATTTTTAAGTG+TGG | + | chr8_1:89645822-89645841 | Msa1224590:intron | 30.0% |
| ACCACACTTAAAAATGCATT+TGG | - | chr8_1:89645826-89645845 | None:intergenic | 30.0% | |
| TATGATGCAGAACAATAATC+TGG | - | chr8_1:89645987-89646006 | None:intergenic | 30.0% | |
| TATAATGTTGGGTTATATCC+AGG | - | chr8_1:89646190-89646209 | None:intergenic | 30.0% | |
| ATGATGCTAAAGAAGTTAAG+TGG | - | chr8_1:89646281-89646300 | None:intergenic | 30.0% | |
| TTTAAAAGTCAACCTCAACT+AGG | - | chr8_1:89646351-89646370 | None:intergenic | 30.0% | |
| CAGAATATCTTTACGAACAT+GGG | - | chr8_1:89646525-89646544 | None:intergenic | 30.0% | |
| ACAGAATATCTTTACGAACA+TGG | - | chr8_1:89646526-89646545 | None:intergenic | 30.0% | |
| ! | GAAAAATGGTGATGTAAGTA+TGG | - | chr8_1:89646779-89646798 | None:intergenic | 30.0% |
| AGCTATTAGTAGTAACCTTT+AGG | - | chr8_1:89646973-89646992 | None:intergenic | 30.0% | |
| !!! | AATACTGGAGTTTTTTGTTG+AGG | + | chr8_1:89647090-89647109 | Msa1224590:intron | 30.0% |
| ! | TTTTGTTGAGGAATTGTCAA+TGG | + | chr8_1:89647102-89647121 | Msa1224590:intron | 30.0% |
| ATTGGATATTCTTGATGCTT+GGG | + | chr8_1:89647127-89647146 | Msa1224590:CDS | 30.0% | |
| ! | TTTATTTGTTGGCTAAAGAG+AGG | + | chr8_1:89647255-89647274 | Msa1224590:CDS | 30.0% |
| ! | TTATTTGTTGGCTAAAGAGA+GGG | + | chr8_1:89647256-89647275 | Msa1224590:CDS | 30.0% |
| !!! | ATTTGGTTTTCAGCTTCATG+AGG | - | chr8_1:89644160-89644179 | None:intergenic | 35.0% |
| GTTTGAGAGAGATTTCGATT+TGG | - | chr8_1:89644177-89644196 | None:intergenic | 35.0% | |
| TAAGGAGAATGGTGGTTTAA+GGG | - | chr8_1:89644224-89644243 | None:intergenic | 35.0% | |
| TTAAGGAGAATGGTGGTTTA+AGG | - | chr8_1:89644225-89644244 | None:intergenic | 35.0% | |
| ! | TTTGGAATGGTTAAGGAGAA+TGG | - | chr8_1:89644235-89644254 | None:intergenic | 35.0% |
| TGAATGTATTCATCGGGATT+TGG | - | chr8_1:89644253-89644272 | None:intergenic | 35.0% | |
| !!! | ATATGGGTTTTGGAGAAATG+GGG | - | chr8_1:89644313-89644332 | None:intergenic | 35.0% |
| !!! | GATATGGGTTTTGGAGAAAT+GGG | - | chr8_1:89644314-89644333 | None:intergenic | 35.0% |
| !!! | TGATATGGGTTTTGGAGAAA+TGG | - | chr8_1:89644315-89644334 | None:intergenic | 35.0% |
| CGGTGAAACATCAACTTATT+TGG | + | chr8_1:89644428-89644447 | Msa1224590:CDS | 35.0% | |
| ACCAACAATTTGCCTCAAAA+GGG | - | chr8_1:89644509-89644528 | None:intergenic | 35.0% | |
| AAACCACTACACAAAACATG+TGG | - | chr8_1:89644619-89644638 | None:intergenic | 35.0% | |
| !! | GTATGTGTTTCTTCGAGTTT+TGG | + | chr8_1:89644639-89644658 | Msa1224590:CDS | 35.0% |
| !!! | AGTTTTGGCTGATCATTGTA+GGG | + | chr8_1:89644654-89644673 | Msa1224590:CDS | 35.0% |
| ATTTCTGTGTGAAGATAGTG+AGG | + | chr8_1:89644719-89644738 | Msa1224590:CDS | 35.0% | |
| TTTCTGTGTGAAGATAGTGA+GGG | + | chr8_1:89644720-89644739 | Msa1224590:CDS | 35.0% | |
| ATTTAACTAGGACTTCGAGT+AGG | + | chr8_1:89644896-89644915 | Msa1224590:CDS | 35.0% | |
| TGCTTACTCATGTGAAATTG+GGG | + | chr8_1:89644968-89644987 | Msa1224590:CDS | 35.0% | |
| !! | ATCAAAAGAGGCATTTGATG+TGG | + | chr8_1:89644992-89645011 | Msa1224590:CDS | 35.0% |
| ACTACAACAGTCTCTTTATC+AGG | - | chr8_1:89645042-89645061 | None:intergenic | 35.0% | |
| TCAGACTGAATAATCTCGTT+CGG | - | chr8_1:89645102-89645121 | None:intergenic | 35.0% | |
| AGTCTGATATAGTTCCTAGA+TGG | + | chr8_1:89645115-89645134 | Msa1224590:CDS | 35.0% | |
| GTCTGATATAGTTCCTAGAT+GGG | + | chr8_1:89645116-89645135 | Msa1224590:CDS | 35.0% | |
| !!! | GTTGGCTTTTGACAACTTTT+AGG | + | chr8_1:89645148-89645167 | Msa1224590:CDS | 35.0% |
| !!! | AGAACCTGCTATTTTGTTGA+TGG | + | chr8_1:89645260-89645279 | Msa1224590:CDS | 35.0% |
| ! | CAAAAACTCAAGAAGAGTGT+TGG | - | chr8_1:89645316-89645335 | None:intergenic | 35.0% |
| TCTTGTGGACAACTATGATA+TGG | + | chr8_1:89645341-89645360 | Msa1224590:CDS | 35.0% | |
| !! | CATTGTTAAAGGTGTCTCAT+TGG | + | chr8_1:89645377-89645396 | Msa1224590:CDS | 35.0% |
| ! | TCAATCCCTCTTTTAGTGAA+GGG | - | chr8_1:89645473-89645492 | None:intergenic | 35.0% |
| TTGAGTAGGCTATTATCATC+TGG | + | chr8_1:89645489-89645508 | Msa1224590:CDS | 35.0% | |
| !! | AGCTCTAAAGAATTTCTTCC+AGG | + | chr8_1:89645522-89645541 | Msa1224590:CDS | 35.0% |
| ATGATAGACTAGAACATACC+TGG | - | chr8_1:89645543-89645562 | None:intergenic | 35.0% | |
| AGGTATGTTCTAGTCTATCA+TGG | + | chr8_1:89645542-89645561 | Msa1224590:intron | 35.0% | |
| ! | TTATAGGAGTATGTAGGAAG+TGG | + | chr8_1:89645620-89645639 | Msa1224590:intron | 35.0% |
| AATCAGTTTCATGTGTGGTA+TGG | + | chr8_1:89645846-89645865 | Msa1224590:intron | 35.0% | |
| TGAATTATGTAGCTGCTGTT+TGG | - | chr8_1:89645897-89645916 | None:intergenic | 35.0% | |
| TTCTTTGTAGTCTCACTCTT+CGG | + | chr8_1:89646131-89646150 | Msa1224590:intron | 35.0% | |
| GTGATACTTGACTTAAAAGC+AGG | - | chr8_1:89646239-89646258 | None:intergenic | 35.0% | |
| GCATCATTAGCATGAAGTTT+AGG | + | chr8_1:89646294-89646313 | Msa1224590:intron | 35.0% | |
| CGAGCTCTATATTCAATCAA+AGG | + | chr8_1:89646469-89646488 | Msa1224590:intron | 35.0% | |
| TTCATCTACATAAACGCAGT+TGG | - | chr8_1:89646940-89646959 | None:intergenic | 35.0% | |
| TTAGTAGTAACCTTTAGGCA+TGG | - | chr8_1:89646968-89646987 | None:intergenic | 35.0% | |
| AATTGTGTCTGACGTCAATA+AGG | - | chr8_1:89647007-89647026 | None:intergenic | 35.0% | |
| CATTGGATATTCTTGATGCT+TGG | + | chr8_1:89647126-89647145 | Msa1224590:CDS | 35.0% | |
| AATACTTGCATGTGAACTCA+AGG | + | chr8_1:89647193-89647212 | Msa1224590:CDS | 35.0% | |
| GTCTGTCACAGTTTATTTGT+TGG | + | chr8_1:89647244-89647263 | Msa1224590:CDS | 35.0% | |
| TTTGAGAGTTGTAAACCTTC+TGG | + | chr8_1:89647348-89647367 | Msa1224590:CDS | 35.0% | |
| TTGAGAGTTGTAAACCTTCT+GGG | + | chr8_1:89647349-89647368 | Msa1224590:CDS | 35.0% | |
| ! | TGTAAACCTTCTGGGAAATT+TGG | + | chr8_1:89647357-89647376 | Msa1224590:CDS | 35.0% |
| ! | GTAAACCTTCTGGGAAATTT+GGG | + | chr8_1:89647358-89647377 | Msa1224590:CDS | 35.0% |
| ! | TAAACCTTCTGGGAAATTTG+GGG | + | chr8_1:89647359-89647378 | Msa1224590:CDS | 35.0% |
| TAAGGGAAGGTTGAAGAGAT+TGG | - | chr8_1:89644207-89644226 | None:intergenic | 40.0% | |
| ! | ATCGGGATTTGGAATGGTTA+AGG | - | chr8_1:89644242-89644261 | None:intergenic | 40.0% |
| GTATTCATCGGGATTTGGAA+TGG | - | chr8_1:89644248-89644267 | None:intergenic | 40.0% | |
| GGCGTGTAAGTGTTTGATAT+GGG | - | chr8_1:89644329-89644348 | None:intergenic | 40.0% | |
| TGGCGTGTAAGTGTTTGATA+TGG | - | chr8_1:89644330-89644349 | None:intergenic | 40.0% | |
| !!! | TCCCTTTTGAGGCAAATTGT+TGG | + | chr8_1:89644505-89644524 | Msa1224590:CDS | 40.0% |
| CACCAACAATTTGCCTCAAA+AGG | - | chr8_1:89644510-89644529 | None:intergenic | 40.0% | |
| !!! | CTTTTGAGGCAAATTGTTGG+TGG | + | chr8_1:89644508-89644527 | Msa1224590:CDS | 40.0% |
| !!! | GAGTTTTGGCTGATCATTGT+AGG | + | chr8_1:89644653-89644672 | Msa1224590:CDS | 40.0% |
| !! | GTTTGAGTCTTTGAAGCGTT+TGG | + | chr8_1:89644690-89644709 | Msa1224590:CDS | 40.0% |
| ! | GGATTTTATTCGGTTGTTGC+AGG | + | chr8_1:89644774-89644793 | Msa1224590:CDS | 40.0% |
| TATTCGGTTGTTGCAGGATT+TGG | + | chr8_1:89644780-89644799 | Msa1224590:CDS | 40.0% | |
| ! | TGAAATTGGGGCATCAAAAG+AGG | + | chr8_1:89644980-89644999 | Msa1224590:CDS | 40.0% |
| TAGGAAGAAGAGTTACGTTG+AGG | + | chr8_1:89645167-89645186 | Msa1224590:CDS | 40.0% | |
| AAACAAAGCCAGTTTGGCAT+TGG | - | chr8_1:89645193-89645212 | None:intergenic | 40.0% | |
| TGCACCATCAACAAAATAGC+AGG | - | chr8_1:89645267-89645286 | None:intergenic | 40.0% | |
| GCATTCTATCACCCAATATG+TGG | + | chr8_1:89645284-89645303 | Msa1224590:CDS | 40.0% | |
| GTTGGTCATCTCCACATATT+GGG | - | chr8_1:89645298-89645317 | None:intergenic | 40.0% | |
| TGTTGGTCATCTCCACATAT+TGG | - | chr8_1:89645299-89645318 | None:intergenic | 40.0% | |
| TTTAGTGAAGGGGACAATGT+AGG | - | chr8_1:89645462-89645481 | None:intergenic | 40.0% | |
| ATTGTCCCCTTCACTAAAAG+AGG | + | chr8_1:89645464-89645483 | Msa1224590:CDS | 40.0% | |
| TTGTCCCCTTCACTAAAAGA+GGG | + | chr8_1:89645465-89645484 | Msa1224590:CDS | 40.0% | |
| ! | CAATCCCTCTTTTAGTGAAG+GGG | - | chr8_1:89645472-89645491 | None:intergenic | 40.0% |
| ! | CTCAATCCCTCTTTTAGTGA+AGG | - | chr8_1:89645474-89645493 | None:intergenic | 40.0% |
| CACTAAAAGAGGGATTGAGT+AGG | + | chr8_1:89645475-89645494 | Msa1224590:CDS | 40.0% | |
| GTGGTAATCAGTTTCATGTG+TGG | + | chr8_1:89645841-89645860 | Msa1224590:intron | 40.0% | |
| GGTCAAAGACAAATCTTGCA+CGG | - | chr8_1:89645958-89645977 | None:intergenic | 40.0% | |
| ! | TCTTGCTGTGACACATTTAC+TGG | + | chr8_1:89646091-89646110 | Msa1224590:intron | 40.0% |
| GAGTGAGACTACAAAGAAGT+TGG | - | chr8_1:89646129-89646148 | None:intergenic | 40.0% | |
| ATGTTGTAAGACGAGTAACC+TGG | + | chr8_1:89646169-89646188 | Msa1224590:intron | 40.0% | |
| AGCATGAAGTTTAGGCAACT+TGG | + | chr8_1:89646302-89646321 | Msa1224590:intron | 40.0% | |
| ATCAGCATAAGACCTAGTTG+AGG | + | chr8_1:89646336-89646355 | Msa1224590:intron | 40.0% | |
| GATTGAATATAGAGCTCGCA+TGG | - | chr8_1:89646467-89646486 | None:intergenic | 40.0% | |
| TACGAACATGGGAATATACC+AGG | - | chr8_1:89646514-89646533 | None:intergenic | 40.0% | |
| !! | TACTATACAGTTTGTTGCCC+TGG | - | chr8_1:89646734-89646753 | None:intergenic | 40.0% |
| TACAGAATTGCTCTTGCCTT+GGG | + | chr8_1:89646876-89646895 | Msa1224590:intron | 40.0% | |
| GTTCTATCACAATACTCCCA+AGG | - | chr8_1:89646895-89646914 | None:intergenic | 40.0% | |
| TTCTTGAACACACTTACAGC+TGG | - | chr8_1:89646917-89646936 | None:intergenic | 40.0% | |
| ! | TGTAACTGTGGGTTGAATAC+TGG | + | chr8_1:89647075-89647094 | Msa1224590:intron | 40.0% |
| GAGGAATTGTCAATGGTCAT+TGG | + | chr8_1:89647109-89647128 | Msa1224590:intron | 40.0% | |
| ! | CTGTCCTTAACTTTCCCTTT+TGG | - | chr8_1:89647164-89647183 | None:intergenic | 40.0% |
| GGAAAGTTAAGGACAGAACT+GGG | + | chr8_1:89647168-89647187 | Msa1224590:CDS | 40.0% | |
| TTGCATGTGAACTCAAGGAT+AGG | + | chr8_1:89647198-89647217 | Msa1224590:CDS | 40.0% | |
| !! | TTTTGGTTGAAACATCCTCC+TGG | + | chr8_1:89647291-89647310 | Msa1224590:CDS | 40.0% |
| ! | TTGAAACATCCTCCTGGTTT+TGG | + | chr8_1:89647297-89647316 | Msa1224590:CDS | 40.0% |
| TAATCCCCAAATTTCCCAGA+AGG | - | chr8_1:89647366-89647385 | None:intergenic | 40.0% | |
| GGAAGGTTGAAGAGATTGGA+GGG | - | chr8_1:89644203-89644222 | None:intergenic | 45.0% | |
| GAGAATGGTGGTTTAAGGGA+AGG | - | chr8_1:89644220-89644239 | None:intergenic | 45.0% | |
| GGAATGGTTAAGGAGAATGG+TGG | - | chr8_1:89644232-89644251 | None:intergenic | 45.0% | |
| !!! | GGTTTTGGAGAAATGGGGTT+GGG | - | chr8_1:89644308-89644327 | None:intergenic | 45.0% |
| TTACACGCCATAATCACCGA+CGG | + | chr8_1:89644340-89644359 | Msa1224590:CDS | 45.0% | |
| GTTGATGTTTCACCGAACCA+AGG | - | chr8_1:89644423-89644442 | None:intergenic | 45.0% | |
| CGAGACGCGAATCATTTCAT+CGG | - | chr8_1:89644458-89644477 | None:intergenic | 45.0% | |
| CGATGAAATGATTCGCGTCT+CGG | + | chr8_1:89644456-89644475 | Msa1224590:CDS | 45.0% | |
| GATGAAATGATTCGCGTCTC+GGG | + | chr8_1:89644457-89644476 | Msa1224590:CDS | 45.0% | |
| ATGAAATGATTCGCGTCTCG+GGG | + | chr8_1:89644458-89644477 | Msa1224590:CDS | 45.0% | |
| ! | GCACCACATGTTTTGTGTAG+TGG | + | chr8_1:89644613-89644632 | Msa1224590:CDS | 45.0% |
| GCTGATCATTGTAGGGTGAA+TGG | + | chr8_1:89644661-89644680 | Msa1224590:CDS | 45.0% | |
| !! | TGAGTCTTTGAAGCGTTTGG+AGG | + | chr8_1:89644693-89644712 | Msa1224590:CDS | 45.0% |
| CGAGTAGGTATGCTTTGCTT+AGG | + | chr8_1:89644911-89644930 | Msa1224590:CDS | 45.0% | |
| GCTTAGGATCACTCCAGAAA+TGG | + | chr8_1:89644927-89644946 | Msa1224590:CDS | 45.0% | |
| CAGAAATGGAGACACAGTTG+CGG | + | chr8_1:89644941-89644960 | Msa1224590:CDS | 45.0% | |
| !! | GGCATTTGATGTGGTTTGCT+AGG | + | chr8_1:89645001-89645020 | Msa1224590:CDS | 45.0% |
| ! | GAATAATCTCGTTCGGTGGA+TGG | - | chr8_1:89645095-89645114 | None:intergenic | 45.0% |
| GACTGAATAATCTCGTTCGG+TGG | - | chr8_1:89645099-89645118 | None:intergenic | 45.0% | |
| !! | GTTCCTAGATGGGCTGTTAT+TGG | + | chr8_1:89645126-89645145 | Msa1224590:CDS | 45.0% |
| CAACCAATAACAGCCCATCT+AGG | - | chr8_1:89645132-89645151 | None:intergenic | 45.0% | |
| !! | CTAGATGGGCTGTTATTGGT+TGG | + | chr8_1:89645130-89645149 | Msa1224590:CDS | 45.0% |
| TGGCTGTTTAGTTGGGACTT+AGG | + | chr8_1:89645776-89645795 | Msa1224590:intron | 45.0% | |
| TGTGTCACAGCAAGAGAAGA+AGG | - | chr8_1:89646086-89646105 | None:intergenic | 45.0% | |
| !! | TTTTCAGTACTGAGTCAGCC+AGG | + | chr8_1:89646713-89646732 | Msa1224590:intron | 45.0% |
| ! | TTTCAGTACTGAGTCAGCCA+GGG | + | chr8_1:89646714-89646733 | Msa1224590:intron | 45.0% |
| GTACAGAATTGCTCTTGCCT+TGG | + | chr8_1:89646875-89646894 | Msa1224590:intron | 45.0% | |
| ! | ATGAAGTGCTCCATGCCTAA+AGG | + | chr8_1:89646955-89646974 | Msa1224590:intron | 45.0% |
| GGGAAAGTTAAGGACAGAAC+TGG | + | chr8_1:89647167-89647186 | Msa1224590:CDS | 45.0% | |
| !! | GGATAGGCCAGTTTTTGAAG+CGG | + | chr8_1:89647214-89647233 | Msa1224590:CDS | 45.0% |
| TGCACATCCGCTTCAAAAAC+TGG | - | chr8_1:89647224-89647243 | None:intergenic | 45.0% | |
| GCTAAAGAGAGGGAAAAGTG+AGG | + | chr8_1:89647266-89647285 | Msa1224590:CDS | 45.0% | |
| !! | GAGGGAAAAGTGAGGTGTTT+TGG | + | chr8_1:89647274-89647293 | Msa1224590:CDS | 45.0% |
| !!! | CTCCTGGTTTTGGTGATCAT+CGG | + | chr8_1:89647307-89647326 | Msa1224590:CDS | 45.0% |
| GCTTCAAGCATCTCTCAACA+GGG | - | chr8_1:89647389-89647408 | None:intergenic | 45.0% | |
| TGCTTCAAGCATCTCTCAAC+AGG | - | chr8_1:89647390-89647409 | None:intergenic | 45.0% | |
| TGAGAGATGCTTGAAGCAGA+TGG | + | chr8_1:89647392-89647411 | Msa1224590:CDS | 45.0% | |
| !! | AGCTTCATGAGGTGCTGTCA+GGG | - | chr8_1:89644149-89644168 | None:intergenic | 50.0% |
| GGGAAGGTTGAAGAGATTGG+AGG | - | chr8_1:89644204-89644223 | None:intergenic | 50.0% | |
| GAAATGGGGTTGGGTGAGAA+TGG | - | chr8_1:89644299-89644318 | None:intergenic | 50.0% | |
| !!! | GGGTTTTGGAGAAATGGGGT+TGG | - | chr8_1:89644309-89644328 | None:intergenic | 50.0% |
| ATTGAGGAGGAGGTTGAGGA+AGG | - | chr8_1:89644374-89644393 | None:intergenic | 50.0% | |
| CGATATTGAGGAGGAGGTTG+AGG | - | chr8_1:89644378-89644397 | None:intergenic | 50.0% | |
| !! | AGAGGTGGTGGACGATATTG+AGG | - | chr8_1:89644390-89644409 | None:intergenic | 50.0% |
| AACCAAGGAGCTTAGGGTAG+AGG | - | chr8_1:89644408-89644427 | None:intergenic | 50.0% | |
| CTACCCTAAGCTCCTTGGTT+CGG | + | chr8_1:89644408-89644427 | Msa1224590:CDS | 50.0% | |
| TCACCGAACCAAGGAGCTTA+GGG | - | chr8_1:89644414-89644433 | None:intergenic | 50.0% | |
| TTCACCGAACCAAGGAGCTT+AGG | - | chr8_1:89644415-89644434 | None:intergenic | 50.0% | |
| CGCAACTGTGTCTCCATTTC+TGG | - | chr8_1:89644943-89644962 | None:intergenic | 50.0% | |
| CAGCAAGAGAAGAAGGAGGA+GGG | - | chr8_1:89646079-89646098 | None:intergenic | 50.0% | |
| ACAGCAAGAGAAGAAGGAGG+AGG | - | chr8_1:89646080-89646099 | None:intergenic | 50.0% | |
| GTCACAGCAAGAGAAGAAGG+AGG | - | chr8_1:89646083-89646102 | None:intergenic | 50.0% | |
| GGACAGCGTGAAAAAGAAGC+TGG | + | chr8_1:89646817-89646836 | Msa1224590:intron | 50.0% | |
| TCTTGATGCTTGGGCACCAA+TGG | + | chr8_1:89647136-89647155 | Msa1224590:CDS | 50.0% | |
| CTTGATGCTTGGGCACCAAT+GGG | + | chr8_1:89647137-89647156 | Msa1224590:CDS | 50.0% | |
| TTGATGCTTGGGCACCAATG+GGG | + | chr8_1:89647138-89647157 | Msa1224590:CDS | 50.0% | |
| ! | ACTTTCCCTTTTGGCCCCAT+TGG | - | chr8_1:89647155-89647174 | None:intergenic | 50.0% |
| GGGGCCAAAAGGGAAAGTTA+AGG | + | chr8_1:89647157-89647176 | Msa1224590:CDS | 50.0% | |
| CGATGATCACCAAAACCAGG+AGG | - | chr8_1:89647309-89647328 | None:intergenic | 50.0% | |
| CACCGATGATCACCAAAACC+AGG | - | chr8_1:89647312-89647331 | None:intergenic | 50.0% | |
| !!! | CTGGTTTTGGTGATCATCGG+TGG | + | chr8_1:89647310-89647329 | Msa1224590:CDS | 50.0% |
| !! | CAGCTTCATGAGGTGCTGTC+AGG | - | chr8_1:89644150-89644169 | None:intergenic | 55.0% |
| GAATGGCGTGAAGGATAGCG+TGG | - | chr8_1:89644282-89644301 | None:intergenic | 55.0% | |
| GTTGGGTGAGAATGGCGTGA+AGG | - | chr8_1:89644291-89644310 | None:intergenic | 55.0% | |
| GGCGTAACCGTCGGTGATTA+TGG | - | chr8_1:89644350-89644369 | None:intergenic | 55.0% | |
| GGTGGACGATATTGAGGAGG+AGG | - | chr8_1:89644384-89644403 | None:intergenic | 55.0% | |
| !! | GGTGGTGGACGATATTGAGG+AGG | - | chr8_1:89644387-89644406 | None:intergenic | 55.0% |
| CAAGGAGCTTAGGGTAGAGG+TGG | - | chr8_1:89644405-89644424 | None:intergenic | 55.0% | |
| CACCTCTACCCTAAGCTCCT+TGG | + | chr8_1:89644403-89644422 | Msa1224590:CDS | 55.0% | |
| ATGATTCGCGTCTCGGGGAT+TGG | + | chr8_1:89644463-89644482 | Msa1224590:CDS | 55.0% | |
| CGTTGAGGCCAATGCCAAAC+TGG | + | chr8_1:89645182-89645201 | Msa1224590:CDS | 55.0% | |
| GAAGAAGGAGGAGGGTGATG+TGG | - | chr8_1:89646071-89646090 | None:intergenic | 55.0% | |
| ! | GGTGCTGTCAGGGTCAGGTT+CGG | - | chr8_1:89644139-89644158 | None:intergenic | 60.0% |
| !! | CATGAGGTGCTGTCAGGGTC+AGG | - | chr8_1:89644144-89644163 | None:intergenic | 60.0% |
| GAGGAAGGTGGCGTAACCGT+CGG | - | chr8_1:89644359-89644378 | None:intergenic | 60.0% | |
| GAGGAGGAGGTTGAGGAAGG+TGG | - | chr8_1:89644371-89644390 | None:intergenic | 60.0% | |
| GGAGCTTAGGGTAGAGGTGG+TGG | - | chr8_1:89644402-89644421 | None:intergenic | 60.0% | |
| TGGGCACCAATGGGGCCAAA+AGG | + | chr8_1:89647146-89647165 | Msa1224590:CDS | 60.0% | |
| GGGCACCAATGGGGCCAAAA+GGG | + | chr8_1:89647147-89647166 | Msa1224590:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 89644130 | 89647419 | 89644130 | ID=Msa1224590;Name=Msa1224590 |
| chr8_1 | mRNA | 89644130 | 89647419 | 89644130 | ID=Msa1224590-mRNA-1;Parent=Msa1224590;Name=Msa1224590-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|2|0|573 |
| chr8_1 | exon | 89644130 | 89645543 | 89644130 | ID=Msa1224590-mRNA-1:exon:32537;Parent=Msa1224590-mRNA-1 |
| chr8_1 | exon | 89647112 | 89647419 | 89647112 | ID=Msa1224590-mRNA-1:exon:32538;Parent=Msa1224590-mRNA-1 |
| chr8_1 | CDS | 89644130 | 89645543 | 89644130 | ID=Msa1224590-mRNA-1:cds;Parent=Msa1224590-mRNA-1 |
| chr8_1 | CDS | 89647112 | 89647419 | 89647112 | ID=Msa1224590-mRNA-1:cds;Parent=Msa1224590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
