Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224620 | XP_003610508.1 | 86.688 | 308 | 28 | 4 | 1 | 298 | 1 | 305 | 1.93e-176 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1224620 | Msa1382020 | 0.806946 | 6.425569e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224620 | MtrunA17_Chr4g0075611 | 86.688 | 308 | 28 | 4 | 1 | 298 | 1 | 305 | 1.78e-180 | 499 |
| Msa1224620 | MtrunA17_Chr4g0075591 | 82.373 | 295 | 40 | 6 | 5 | 298 | 4 | 287 | 1.26e-171 | 476 |
| Msa1224620 | MtrunA17_Chr2g0289701 | 56.250 | 320 | 104 | 11 | 9 | 298 | 4 | 317 | 9.42e-111 | 323 |
| Msa1224620 | MtrunA17_Chr8g0339051 | 37.238 | 239 | 130 | 7 | 34 | 258 | 34 | 266 | 5.52e-40 | 141 |
| Msa1224620 | MtrunA17_Chr1g0166241 | 34.348 | 230 | 122 | 6 | 48 | 259 | 64 | 282 | 7.79e-36 | 132 |
| Msa1224620 | MtrunA17_Chr7g0234691 | 34.188 | 234 | 131 | 7 | 48 | 273 | 94 | 312 | 1.87e-33 | 125 |
| Msa1224620 | MtrunA17_Chr1g0184881 | 41.606 | 137 | 80 | 0 | 128 | 264 | 166 | 302 | 2.23e-33 | 125 |
| Msa1224620 | MtrunA17_Chr1g0188091 | 41.667 | 132 | 71 | 1 | 124 | 249 | 163 | 294 | 7.79e-33 | 124 |
| Msa1224620 | MtrunA17_Chr5g0396281 | 32.843 | 204 | 113 | 5 | 86 | 270 | 45 | 243 | 2.45e-32 | 120 |
| Msa1224620 | MtrunA17_Chr2g0282301 | 35.465 | 172 | 90 | 2 | 106 | 256 | 104 | 275 | 4.24e-32 | 121 |
| Msa1224620 | MtrunA17_Chr7g0260551 | 43.200 | 125 | 71 | 0 | 131 | 255 | 161 | 285 | 8.45e-32 | 121 |
| Msa1224620 | MtrunA17_Chr8g0384101 | 33.149 | 181 | 112 | 2 | 92 | 265 | 46 | 224 | 1.86e-31 | 118 |
| Msa1224620 | MtrunA17_Chr7g0251511 | 34.146 | 246 | 141 | 9 | 26 | 256 | 23 | 262 | 5.04e-31 | 118 |
| Msa1224620 | MtrunA17_Chr4g0047231 | 33.721 | 172 | 104 | 3 | 106 | 269 | 123 | 292 | 1.85e-30 | 117 |
| Msa1224620 | MtrunA17_Chr4g0047221 | 36.129 | 155 | 90 | 3 | 122 | 269 | 193 | 345 | 2.80e-30 | 117 |
| Msa1224620 | MtrunA17_Chr4g0040171 | 32.584 | 178 | 103 | 4 | 86 | 247 | 67 | 243 | 5.63e-29 | 112 |
| Msa1224620 | MtrunA17_Chr2g0282311 | 28.017 | 232 | 138 | 4 | 47 | 253 | 45 | 272 | 6.51e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224620 | AT1G62420.1 | 44.337 | 309 | 127 | 13 | 1 | 296 | 1 | 277 | 2.02e-62 | 199 |
| Msa1224620 | AT1G12030.1 | 46.715 | 274 | 121 | 10 | 34 | 297 | 29 | 287 | 1.33e-61 | 197 |
| Msa1224620 | AT3G07350.1 | 32.867 | 286 | 171 | 7 | 22 | 288 | 14 | 297 | 1.44e-40 | 143 |
| Msa1224620 | AT4G14620.1 | 33.188 | 229 | 135 | 4 | 35 | 257 | 54 | 270 | 1.45e-39 | 141 |
| Msa1224620 | AT3G25240.1 | 38.919 | 185 | 94 | 3 | 102 | 267 | 85 | 269 | 4.39e-36 | 131 |
| Msa1224620 | AT2G38820.2 | 43.750 | 112 | 63 | 0 | 142 | 253 | 171 | 282 | 9.54e-35 | 128 |
| Msa1224620 | AT4G32480.1 | 33.171 | 205 | 112 | 5 | 69 | 255 | 50 | 247 | 1.57e-33 | 124 |
| Msa1224620 | AT3G22970.1 | 31.915 | 235 | 142 | 5 | 32 | 255 | 66 | 293 | 3.22e-32 | 122 |
| Msa1224620 | AT3G22970.2 | 40.476 | 126 | 75 | 0 | 130 | 255 | 57 | 182 | 6.23e-32 | 119 |
| Msa1224620 | AT3G54550.1 | 43.590 | 117 | 62 | 1 | 142 | 254 | 156 | 272 | 5.34e-31 | 117 |
| Msa1224620 | AT2G20670.1 | 37.600 | 125 | 72 | 2 | 142 | 260 | 130 | 254 | 2.32e-25 | 102 |
| Msa1224620 | AT2G39650.2 | 33.103 | 145 | 91 | 1 | 120 | 258 | 38 | 182 | 6.43e-25 | 100 |
| Msa1224620 | AT2G39650.1 | 33.103 | 145 | 91 | 1 | 120 | 258 | 100 | 244 | 1.10e-24 | 100 |
| Msa1224620 | AT1G77145.1 | 39.130 | 138 | 66 | 3 | 134 | 253 | 79 | 216 | 6.31e-23 | 95.5 |
| Msa1224620 | AT1G77160.2 | 34.337 | 166 | 91 | 3 | 106 | 253 | 1 | 166 | 3.07e-21 | 89.7 |
| Msa1224620 | AT1G77160.1 | 34.337 | 166 | 91 | 3 | 106 | 253 | 56 | 221 | 5.54e-21 | 90.5 |
| Msa1224620 | AT1G77145.2 | 39.423 | 104 | 53 | 1 | 160 | 253 | 56 | 159 | 1.04e-17 | 80.1 |
Find 61 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATCTCAGGGATAATTT+TGG | 0.188513 | 8_1:-89662113 | Msa1224620:CDS |
| AAATCATCAGTTAAACTTTC+AGG | 0.239669 | 8_1:+89663119 | None:intergenic |
| GATAATGTGCAGTGCTATTA+AGG | 0.247598 | 8_1:-89662282 | Msa1224620:CDS |
| GGAACAATGTTTGAAATTAT+AGG | 0.274698 | 8_1:-89663245 | None:intergenic |
| CATAATCATGTCACGCTTGC+GGG | 0.278629 | 8_1:-89662844 | Msa1224620:CDS |
| CATTAGTTGTTCTCTTATAC+TGG | 0.297305 | 8_1:+89662186 | None:intergenic |
| AAAGAAGTGTATTGATTTGT+AGG | 0.304916 | 8_1:+89662365 | None:intergenic |
| CATTGTTGAAACATCCCTTA+TGG | 0.317564 | 8_1:-89662408 | Msa1224620:CDS |
| AGAAAGTCCATTGGATTTGA+TGG | 0.339951 | 8_1:-89662152 | Msa1224620:CDS |
| CCTGAGATTGTATGCTTTCA+AGG | 0.359331 | 8_1:+89662124 | None:intergenic |
| AATTCTGTGAGAGCAGTATT+AGG | 0.375491 | 8_1:-89663065 | Msa1224620:CDS |
| GAGTACATTGATGTGAATTA+TGG | 0.404322 | 8_1:-89662443 | Msa1224620:CDS |
| CCTTGAAAGCATACAATCTC+AGG | 0.405320 | 8_1:-89662124 | Msa1224620:CDS |
| CGTTAAATGCAGCAGTCAAC+TGG | 0.410653 | 8_1:+89662066 | None:intergenic |
| AATTATAGGAAGTGTTATTC+CGG | 0.414157 | 8_1:-89663231 | Msa1224620:CDS |
| AGATCTTGTGAAATCGTTCA+TGG | 0.414693 | 8_1:-89663093 | Msa1224620:CDS |
| GTAAAGTTGAAGAGCTGAAA+AGG | 0.427347 | 8_1:-89662313 | Msa1224620:CDS |
| GAACTTGCCATTCAAGTTGT+TGG | 0.461063 | 8_1:-89662897 | Msa1224620:CDS |
| CTATTTCGAATTCAGCCATA+AGG | 0.461134 | 8_1:+89662393 | None:intergenic |
| AAAGCAGTGGAAGCGAGCAC+TGG | 0.461367 | 8_1:-89663142 | Msa1224620:CDS |
| ACTTTACCAACAAATACTAA+AGG | 0.462980 | 8_1:+89662329 | None:intergenic |
| CTTTACCAACAAATACTAAA+GGG | 0.468349 | 8_1:+89662330 | None:intergenic |
| GAAAGAGAAGATTAGAAGAG+AGG | 0.483731 | 8_1:-89662922 | Msa1224620:CDS |
| ATGTAGCTATTTCTTCTCCA+TGG | 0.487255 | 8_1:+89662227 | None:intergenic |
| AGTAAAATTGATGTTAGAGT+TGG | 0.492479 | 8_1:-89662089 | Msa1224620:CDS |
| TATTTCGAATTCAGCCATAA+GGG | 0.492670 | 8_1:+89662394 | None:intergenic |
| GGTGGTGATAAGTCTTCGTC+TGG | 0.499115 | 8_1:-89662876 | Msa1224620:CDS |
| GTATGATTATGAGGAGAAGA+AGG | 0.513246 | 8_1:-89662991 | Msa1224620:CDS |
| TAAAGTTGAAGAGCTGAAAA+GGG | 0.521956 | 8_1:-89662312 | Msa1224620:CDS |
| ATCACCACCAACAACTTGAA+TGG | 0.529366 | 8_1:+89662890 | None:intergenic |
| GCATAATCATGTCACGCTTG+CGG | 0.531893 | 8_1:-89662845 | Msa1224620:CDS |
| AGAAATAGAAAATTCCCATC+GGG | 0.533461 | 8_1:-89662473 | Msa1224620:CDS |
| CTTGCCATTCAAGTTGTTGG+TGG | 0.554975 | 8_1:-89662894 | Msa1224620:CDS |
| CAGGGCTTTGCAAATCTAAG+TGG | 0.555631 | 8_1:-89662499 | Msa1224620:CDS |
| CTGAGATTGTATGCTTTCAA+GGG | 0.558296 | 8_1:+89662125 | None:intergenic |
| TACATTGATGTGAATTATGG+TGG | 0.560910 | 8_1:-89662440 | Msa1224620:CDS |
| TAAGGACTCTATGAAAACAA+TGG | 0.564737 | 8_1:-89662264 | Msa1224620:CDS |
| GTTGCAACAAGAAAGTCCAT+TGG | 0.572572 | 8_1:-89662161 | Msa1224620:CDS |
| AAGAAATAGAAAATTCCCAT+CGG | 0.581281 | 8_1:-89662474 | Msa1224620:CDS |
| GGGTCTTCCATCAAATCCAA+TGG | 0.585157 | 8_1:+89662145 | None:intergenic |
| TTTACCTTCTCAATCCTCAC+CGG | 0.585662 | 8_1:+89663212 | None:intergenic |
| TGGATATGCATGTACCTCCA+TGG | 0.588780 | 8_1:-89662244 | Msa1224620:CDS |
| GTTTGAGAGTAACGAGGCGG+CGG | 0.589983 | 8_1:-89663183 | Msa1224620:CDS |
| ATAGCTACATGCAAGCTAAG+TGG | 0.590588 | 8_1:-89662214 | Msa1224620:CDS |
| ATGTCACGCTTGCGGGAGAG+AGG | 0.595841 | 8_1:-89662837 | Msa1224620:CDS |
| GGTGAGGATTGAGAAGGTAA+AGG | 0.595964 | 8_1:-89663210 | Msa1224620:CDS |
| AAGAGCTGAAAAGGGTTGTG+AGG | 0.601387 | 8_1:-89662304 | Msa1224620:CDS |
| GTAACGAGGCGGCGGCGCGT+GGG | 0.603261 | 8_1:-89663175 | Msa1224620:CDS |
| ACGAGGCGGCGGCGCGTGGG+AGG | 0.604537 | 8_1:-89663172 | Msa1224620:CDS |
| AGGGCTTTGCAAATCTAAGT+GGG | 0.632011 | 8_1:-89662498 | Msa1224620:CDS |
| TAGGAAGTGTTATTCCGGTG+AGG | 0.632868 | 8_1:-89663226 | Msa1224620:CDS |
| GTATAAGAGAACAACTAATG+AGG | 0.635389 | 8_1:-89662183 | Msa1224620:CDS |
| CTTGAAAGCATACAATCTCA+GGG | 0.641796 | 8_1:-89662123 | Msa1224620:CDS |
| GGGAGGCTATGTGAAAGCAG+TGG | 0.667259 | 8_1:-89663155 | Msa1224620:CDS |
| TATTCCGGTGAGGATTGAGA+AGG | 0.668046 | 8_1:-89663216 | Msa1224620:CDS |
| TGTACTCATAGTCACCCGAT+GGG | 0.668108 | 8_1:+89662459 | None:intergenic |
| TAGCTATTTCTTCTCCATGG+AGG | 0.674555 | 8_1:+89662230 | None:intergenic |
| AGTATTAGGAAATGAAGATG+CGG | 0.688266 | 8_1:-89663051 | Msa1224620:CDS |
| GAGGATTGAGAAGGTAAAGG+CGG | 0.701460 | 8_1:-89663207 | Msa1224620:CDS |
| GGCGTTTGAGAGTAACGAGG+CGG | 0.709363 | 8_1:-89663186 | Msa1224620:CDS |
| GGCGGCGTTTGAGAGTAACG+AGG | 0.791545 | 8_1:-89663189 | Msa1224620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGTATTAATTTAGTTT+TGG | - | chr8_1:89662575-89662594 | Msa1224620:intron | 10.0% |
| !!! | AATTAGTATTAATTTAGTTT+TGG | - | chr8_1:89662575-89662594 | Msa1224620:intron | 10.0% |
| !!! | GTATTAATTTAGTTTTGGTT+TGG | - | chr8_1:89662580-89662599 | Msa1224620:intron | 20.0% |
| !!! | GTATTAATTTAGTTTTGGTT+TGG | - | chr8_1:89662580-89662599 | Msa1224620:intron | 20.0% |
| !!! | AATTATAGGAAGTGTTATTC+CGG | - | chr8_1:89662066-89662085 | Msa1224620:CDS | 25.0% |
| ! | AAATCATCAGTTAAACTTTC+AGG | + | chr8_1:89662181-89662200 | None:intergenic | 25.0% |
| !! | GATATACTGAAAGAGATTTT+CGG | - | chr8_1:89662328-89662347 | Msa1224620:CDS | 25.0% |
| ! | ACTTAATTCATTCAAATGTG+AGG | - | chr8_1:89662522-89662541 | Msa1224620:intron | 25.0% |
| !!! | AATTTAGTTTTGGTTTGGTT+TGG | - | chr8_1:89662585-89662604 | Msa1224620:intron | 25.0% |
| ! | AAGAAATAGAAAATTCCCAT+CGG | - | chr8_1:89662823-89662842 | Msa1224620:intron | 25.0% |
| !!! | AAAGAAGTGTATTGATTTGT+AGG | + | chr8_1:89662935-89662954 | None:intergenic | 25.0% |
| ! | CTTTACCAACAAATACTAAA+GGG | + | chr8_1:89662970-89662989 | None:intergenic | 25.0% |
| ! | ACTTTACCAACAAATACTAA+AGG | + | chr8_1:89662971-89662990 | None:intergenic | 25.0% |
| ! | AGTAAAATTGATGTTAGAGT+TGG | - | chr8_1:89663208-89663227 | Msa1224620:CDS | 25.0% |
| !!! | AATTATAGGAAGTGTTATTC+CGG | - | chr8_1:89662066-89662085 | Msa1224620:CDS | 25.0% |
| ! | AAATCATCAGTTAAACTTTC+AGG | + | chr8_1:89662181-89662200 | None:intergenic | 25.0% |
| !! | GATATACTGAAAGAGATTTT+CGG | - | chr8_1:89662328-89662347 | Msa1224620:CDS | 25.0% |
| ! | ACTTAATTCATTCAAATGTG+AGG | - | chr8_1:89662522-89662541 | Msa1224620:intron | 25.0% |
| !!! | AATTTAGTTTTGGTTTGGTT+TGG | - | chr8_1:89662585-89662604 | Msa1224620:intron | 25.0% |
| ! | AAGAAATAGAAAATTCCCAT+CGG | - | chr8_1:89662823-89662842 | Msa1224620:intron | 25.0% |
| !!! | AAAGAAGTGTATTGATTTGT+AGG | + | chr8_1:89662935-89662954 | None:intergenic | 25.0% |
| ! | CTTTACCAACAAATACTAAA+GGG | + | chr8_1:89662970-89662989 | None:intergenic | 25.0% |
| ! | ACTTTACCAACAAATACTAA+AGG | + | chr8_1:89662971-89662990 | None:intergenic | 25.0% |
| ! | AGTAAAATTGATGTTAGAGT+TGG | - | chr8_1:89663208-89663227 | Msa1224620:CDS | 25.0% |
| AGTATTAGGAAATGAAGATG+CGG | - | chr8_1:89662246-89662265 | Msa1224620:CDS | 30.0% | |
| !! | TTTTGAGTGGTATGATTATG+AGG | - | chr8_1:89662297-89662316 | Msa1224620:CDS | 30.0% |
| ! | AAATGTGAGGTTTTGCTTAA+TGG | - | chr8_1:89662535-89662554 | Msa1224620:intron | 30.0% |
| AGAAATAGAAAATTCCCATC+GGG | - | chr8_1:89662824-89662843 | Msa1224620:intron | 30.0% | |
| GAGTACATTGATGTGAATTA+TGG | - | chr8_1:89662854-89662873 | Msa1224620:CDS | 30.0% | |
| TACATTGATGTGAATTATGG+TGG | - | chr8_1:89662857-89662876 | Msa1224620:CDS | 30.0% | |
| TATTTCGAATTCAGCCATAA+GGG | + | chr8_1:89662906-89662925 | None:intergenic | 30.0% | |
| ! | GTTTTCCCTTTAGTATTTGT+TGG | - | chr8_1:89662962-89662981 | Msa1224620:CDS | 30.0% |
| TAAAGTTGAAGAGCTGAAAA+GGG | - | chr8_1:89662985-89663004 | Msa1224620:CDS | 30.0% | |
| TAAGGACTCTATGAAAACAA+TGG | - | chr8_1:89663033-89663052 | Msa1224620:CDS | 30.0% | |
| CATTAGTTGTTCTCTTATAC+TGG | + | chr8_1:89663114-89663133 | None:intergenic | 30.0% | |
| GTATAAGAGAACAACTAATG+AGG | - | chr8_1:89663114-89663133 | Msa1224620:CDS | 30.0% | |
| ! | TACAATCTCAGGGATAATTT+TGG | - | chr8_1:89663184-89663203 | Msa1224620:CDS | 30.0% |
| ! | ACAATCTCAGGGATAATTTT+GGG | - | chr8_1:89663185-89663204 | Msa1224620:CDS | 30.0% |
| AGTATTAGGAAATGAAGATG+CGG | - | chr8_1:89662246-89662265 | Msa1224620:CDS | 30.0% | |
| !! | TTTTGAGTGGTATGATTATG+AGG | - | chr8_1:89662297-89662316 | Msa1224620:CDS | 30.0% |
| ! | AAATGTGAGGTTTTGCTTAA+TGG | - | chr8_1:89662535-89662554 | Msa1224620:intron | 30.0% |
| AGAAATAGAAAATTCCCATC+GGG | - | chr8_1:89662824-89662843 | Msa1224620:intron | 30.0% | |
| GAGTACATTGATGTGAATTA+TGG | - | chr8_1:89662854-89662873 | Msa1224620:CDS | 30.0% | |
| TACATTGATGTGAATTATGG+TGG | - | chr8_1:89662857-89662876 | Msa1224620:CDS | 30.0% | |
| TATTTCGAATTCAGCCATAA+GGG | + | chr8_1:89662906-89662925 | None:intergenic | 30.0% | |
| ! | GTTTTCCCTTTAGTATTTGT+TGG | - | chr8_1:89662962-89662981 | Msa1224620:CDS | 30.0% |
| TAAAGTTGAAGAGCTGAAAA+GGG | - | chr8_1:89662985-89663004 | Msa1224620:CDS | 30.0% | |
| TAAGGACTCTATGAAAACAA+TGG | - | chr8_1:89663033-89663052 | Msa1224620:CDS | 30.0% | |
| CATTAGTTGTTCTCTTATAC+TGG | + | chr8_1:89663114-89663133 | None:intergenic | 30.0% | |
| GTATAAGAGAACAACTAATG+AGG | - | chr8_1:89663114-89663133 | Msa1224620:CDS | 30.0% | |
| ! | TACAATCTCAGGGATAATTT+TGG | - | chr8_1:89663184-89663203 | Msa1224620:CDS | 30.0% |
| ! | ACAATCTCAGGGATAATTTT+GGG | - | chr8_1:89663185-89663204 | Msa1224620:CDS | 30.0% |
| AGATCTTGTGAAATCGTTCA+TGG | - | chr8_1:89662204-89662223 | Msa1224620:CDS | 35.0% | |
| AATTCTGTGAGAGCAGTATT+AGG | - | chr8_1:89662232-89662251 | Msa1224620:CDS | 35.0% | |
| ! | ATGATGATCGTGATTTTGAG+TGG | - | chr8_1:89662284-89662303 | Msa1224620:CDS | 35.0% |
| GTATGATTATGAGGAGAAGA+AGG | - | chr8_1:89662306-89662325 | Msa1224620:CDS | 35.0% | |
| GAAAGAGAAGATTAGAAGAG+AGG | - | chr8_1:89662375-89662394 | Msa1224620:CDS | 35.0% | |
| CATTGTTGAAACATCCCTTA+TGG | - | chr8_1:89662889-89662908 | Msa1224620:CDS | 35.0% | |
| CTATTTCGAATTCAGCCATA+AGG | + | chr8_1:89662907-89662926 | None:intergenic | 35.0% | |
| GTAAAGTTGAAGAGCTGAAA+AGG | - | chr8_1:89662984-89663003 | Msa1224620:CDS | 35.0% | |
| ! | GATAATGTGCAGTGCTATTA+AGG | - | chr8_1:89663015-89663034 | Msa1224620:CDS | 35.0% |
| !! | ATGTAGCTATTTCTTCTCCA+TGG | + | chr8_1:89663073-89663092 | None:intergenic | 35.0% |
| AGAAAGTCCATTGGATTTGA+TGG | - | chr8_1:89663145-89663164 | Msa1224620:CDS | 35.0% | |
| CTGAGATTGTATGCTTTCAA+GGG | + | chr8_1:89663175-89663194 | None:intergenic | 35.0% | |
| ! | CTTGAAAGCATACAATCTCA+GGG | - | chr8_1:89663174-89663193 | Msa1224620:CDS | 35.0% |
| AGATCTTGTGAAATCGTTCA+TGG | - | chr8_1:89662204-89662223 | Msa1224620:CDS | 35.0% | |
| AATTCTGTGAGAGCAGTATT+AGG | - | chr8_1:89662232-89662251 | Msa1224620:CDS | 35.0% | |
| ! | ATGATGATCGTGATTTTGAG+TGG | - | chr8_1:89662284-89662303 | Msa1224620:CDS | 35.0% |
| GTATGATTATGAGGAGAAGA+AGG | - | chr8_1:89662306-89662325 | Msa1224620:CDS | 35.0% | |
| GAAAGAGAAGATTAGAAGAG+AGG | - | chr8_1:89662375-89662394 | Msa1224620:CDS | 35.0% | |
| CATTGTTGAAACATCCCTTA+TGG | - | chr8_1:89662889-89662908 | Msa1224620:CDS | 35.0% | |
| CTATTTCGAATTCAGCCATA+AGG | + | chr8_1:89662907-89662926 | None:intergenic | 35.0% | |
| GTAAAGTTGAAGAGCTGAAA+AGG | - | chr8_1:89662984-89663003 | Msa1224620:CDS | 35.0% | |
| ! | GATAATGTGCAGTGCTATTA+AGG | - | chr8_1:89663015-89663034 | Msa1224620:CDS | 35.0% |
| !! | ATGTAGCTATTTCTTCTCCA+TGG | + | chr8_1:89663073-89663092 | None:intergenic | 35.0% |
| AGAAAGTCCATTGGATTTGA+TGG | - | chr8_1:89663145-89663164 | Msa1224620:CDS | 35.0% | |
| CTGAGATTGTATGCTTTCAA+GGG | + | chr8_1:89663175-89663194 | None:intergenic | 35.0% | |
| ! | CTTGAAAGCATACAATCTCA+GGG | - | chr8_1:89663174-89663193 | Msa1224620:CDS | 35.0% |
| TTTACCTTCTCAATCCTCAC+CGG | + | chr8_1:89662088-89662107 | None:intergenic | 40.0% | |
| !! | GAACTTGCCATTCAAGTTGT+TGG | - | chr8_1:89662400-89662419 | Msa1224620:CDS | 40.0% |
| ATCACCACCAACAACTTGAA+TGG | + | chr8_1:89662410-89662429 | None:intergenic | 40.0% | |
| !! | TTGCTGTACTTTTTGTGTCC+AGG | - | chr8_1:89662779-89662798 | Msa1224620:intron | 40.0% |
| !! | TGCTGTACTTTTTGTGTCCA+GGG | - | chr8_1:89662780-89662799 | Msa1224620:intron | 40.0% |
| AGGGCTTTGCAAATCTAAGT+GGG | - | chr8_1:89662799-89662818 | Msa1224620:intron | 40.0% | |
| !! | TAGCTATTTCTTCTCCATGG+AGG | + | chr8_1:89663070-89663089 | None:intergenic | 40.0% |
| ATAGCTACATGCAAGCTAAG+TGG | - | chr8_1:89663083-89663102 | Msa1224620:CDS | 40.0% | |
| GTTGCAACAAGAAAGTCCAT+TGG | - | chr8_1:89663136-89663155 | Msa1224620:CDS | 40.0% | |
| CCTGAGATTGTATGCTTTCA+AGG | + | chr8_1:89663176-89663195 | None:intergenic | 40.0% | |
| ! | CCTTGAAAGCATACAATCTC+AGG | - | chr8_1:89663173-89663192 | Msa1224620:CDS | 40.0% |
| TTTACCTTCTCAATCCTCAC+CGG | + | chr8_1:89662088-89662107 | None:intergenic | 40.0% | |
| !! | GAACTTGCCATTCAAGTTGT+TGG | - | chr8_1:89662400-89662419 | Msa1224620:CDS | 40.0% |
| ATCACCACCAACAACTTGAA+TGG | + | chr8_1:89662410-89662429 | None:intergenic | 40.0% | |
| !! | TTGCTGTACTTTTTGTGTCC+AGG | - | chr8_1:89662779-89662798 | Msa1224620:intron | 40.0% |
| !! | TGCTGTACTTTTTGTGTCCA+GGG | - | chr8_1:89662780-89662799 | Msa1224620:intron | 40.0% |
| AGGGCTTTGCAAATCTAAGT+GGG | - | chr8_1:89662799-89662818 | Msa1224620:intron | 40.0% | |
| !! | TAGCTATTTCTTCTCCATGG+AGG | + | chr8_1:89663070-89663089 | None:intergenic | 40.0% |
| ATAGCTACATGCAAGCTAAG+TGG | - | chr8_1:89663083-89663102 | Msa1224620:CDS | 40.0% | |
| GTTGCAACAAGAAAGTCCAT+TGG | - | chr8_1:89663136-89663155 | Msa1224620:CDS | 40.0% | |
| CCTGAGATTGTATGCTTTCA+AGG | + | chr8_1:89663176-89663195 | None:intergenic | 40.0% | |
| ! | CCTTGAAAGCATACAATCTC+AGG | - | chr8_1:89663173-89663192 | Msa1224620:CDS | 40.0% |
| !! | TAGGAAGTGTTATTCCGGTG+AGG | - | chr8_1:89662071-89662090 | Msa1224620:CDS | 45.0% |
| TATTCCGGTGAGGATTGAGA+AGG | - | chr8_1:89662081-89662100 | Msa1224620:CDS | 45.0% | |
| GGTGAGGATTGAGAAGGTAA+AGG | - | chr8_1:89662087-89662106 | Msa1224620:CDS | 45.0% | |
| GAGGATTGAGAAGGTAAAGG+CGG | - | chr8_1:89662090-89662109 | Msa1224620:CDS | 45.0% | |
| !! | CTTGCCATTCAAGTTGTTGG+TGG | - | chr8_1:89662403-89662422 | Msa1224620:CDS | 45.0% |
| GCATAATCATGTCACGCTTG+CGG | - | chr8_1:89662452-89662471 | Msa1224620:CDS | 45.0% | |
| CATAATCATGTCACGCTTGC+GGG | - | chr8_1:89662453-89662472 | Msa1224620:CDS | 45.0% | |
| CACTTAGATTTGCAAAGCCC+TGG | + | chr8_1:89662800-89662819 | None:intergenic | 45.0% | |
| CAGGGCTTTGCAAATCTAAG+TGG | - | chr8_1:89662798-89662817 | Msa1224620:intron | 45.0% | |
| TGTACTCATAGTCACCCGAT+GGG | + | chr8_1:89662841-89662860 | None:intergenic | 45.0% | |
| ATGTACTCATAGTCACCCGA+TGG | + | chr8_1:89662842-89662861 | None:intergenic | 45.0% | |
| AAGAGCTGAAAAGGGTTGTG+AGG | - | chr8_1:89662993-89663012 | Msa1224620:CDS | 45.0% | |
| TGGATATGCATGTACCTCCA+TGG | - | chr8_1:89663053-89663072 | Msa1224620:CDS | 45.0% | |
| GGGTCTTCCATCAAATCCAA+TGG | + | chr8_1:89663155-89663174 | None:intergenic | 45.0% | |
| CGTTAAATGCAGCAGTCAAC+TGG | + | chr8_1:89663234-89663253 | None:intergenic | 45.0% | |
| !! | TAGGAAGTGTTATTCCGGTG+AGG | - | chr8_1:89662071-89662090 | Msa1224620:CDS | 45.0% |
| TATTCCGGTGAGGATTGAGA+AGG | - | chr8_1:89662081-89662100 | Msa1224620:CDS | 45.0% | |
| GGTGAGGATTGAGAAGGTAA+AGG | - | chr8_1:89662087-89662106 | Msa1224620:CDS | 45.0% | |
| GAGGATTGAGAAGGTAAAGG+CGG | - | chr8_1:89662090-89662109 | Msa1224620:CDS | 45.0% | |
| !! | CTTGCCATTCAAGTTGTTGG+TGG | - | chr8_1:89662403-89662422 | Msa1224620:CDS | 45.0% |
| GCATAATCATGTCACGCTTG+CGG | - | chr8_1:89662452-89662471 | Msa1224620:CDS | 45.0% | |
| CATAATCATGTCACGCTTGC+GGG | - | chr8_1:89662453-89662472 | Msa1224620:CDS | 45.0% | |
| CACTTAGATTTGCAAAGCCC+TGG | + | chr8_1:89662800-89662819 | None:intergenic | 45.0% | |
| CAGGGCTTTGCAAATCTAAG+TGG | - | chr8_1:89662798-89662817 | Msa1224620:intron | 45.0% | |
| TGTACTCATAGTCACCCGAT+GGG | + | chr8_1:89662841-89662860 | None:intergenic | 45.0% | |
| ATGTACTCATAGTCACCCGA+TGG | + | chr8_1:89662842-89662861 | None:intergenic | 45.0% | |
| AAGAGCTGAAAAGGGTTGTG+AGG | - | chr8_1:89662993-89663012 | Msa1224620:CDS | 45.0% | |
| TGGATATGCATGTACCTCCA+TGG | - | chr8_1:89663053-89663072 | Msa1224620:CDS | 45.0% | |
| GGGTCTTCCATCAAATCCAA+TGG | + | chr8_1:89663155-89663174 | None:intergenic | 45.0% | |
| CGTTAAATGCAGCAGTCAAC+TGG | + | chr8_1:89663234-89663253 | None:intergenic | 45.0% | |
| GGTGGTGATAAGTCTTCGTC+TGG | - | chr8_1:89662421-89662440 | Msa1224620:CDS | 50.0% | |
| GGTGGTGATAAGTCTTCGTC+TGG | - | chr8_1:89662421-89662440 | Msa1224620:CDS | 50.0% | |
| GGCGTTTGAGAGTAACGAGG+CGG | - | chr8_1:89662111-89662130 | Msa1224620:CDS | 55.0% | |
| GTTTGAGAGTAACGAGGCGG+CGG | - | chr8_1:89662114-89662133 | Msa1224620:CDS | 55.0% | |
| GGGAGGCTATGTGAAAGCAG+TGG | - | chr8_1:89662142-89662161 | Msa1224620:CDS | 55.0% | |
| AAAGCAGTGGAAGCGAGCAC+TGG | - | chr8_1:89662155-89662174 | Msa1224620:CDS | 55.0% | |
| !! | CGGGAGAGAGGTTTTGATGC+TGG | - | chr8_1:89662472-89662491 | Msa1224620:CDS | 55.0% |
| GGCGTTTGAGAGTAACGAGG+CGG | - | chr8_1:89662111-89662130 | Msa1224620:CDS | 55.0% | |
| GTTTGAGAGTAACGAGGCGG+CGG | - | chr8_1:89662114-89662133 | Msa1224620:CDS | 55.0% | |
| GGGAGGCTATGTGAAAGCAG+TGG | - | chr8_1:89662142-89662161 | Msa1224620:CDS | 55.0% | |
| AAAGCAGTGGAAGCGAGCAC+TGG | - | chr8_1:89662155-89662174 | Msa1224620:CDS | 55.0% | |
| !! | CGGGAGAGAGGTTTTGATGC+TGG | - | chr8_1:89662472-89662491 | Msa1224620:CDS | 55.0% |
| GGCGGCGTTTGAGAGTAACG+AGG | - | chr8_1:89662108-89662127 | Msa1224620:CDS | 60.0% | |
| ATGTCACGCTTGCGGGAGAG+AGG | - | chr8_1:89662460-89662479 | Msa1224620:CDS | 60.0% | |
| GGCGGCGTTTGAGAGTAACG+AGG | - | chr8_1:89662108-89662127 | Msa1224620:CDS | 60.0% | |
| ATGTCACGCTTGCGGGAGAG+AGG | - | chr8_1:89662460-89662479 | Msa1224620:CDS | 60.0% | |
| AGTAACGAGGCGGCGGCGCG+TGG | - | chr8_1:89662121-89662140 | Msa1224620:CDS | 75.0% | |
| GTAACGAGGCGGCGGCGCGT+GGG | - | chr8_1:89662122-89662141 | Msa1224620:CDS | 75.0% | |
| AGTAACGAGGCGGCGGCGCG+TGG | - | chr8_1:89662121-89662140 | Msa1224620:CDS | 75.0% | |
| GTAACGAGGCGGCGGCGCGT+GGG | - | chr8_1:89662122-89662141 | Msa1224620:CDS | 75.0% | |
| ! | ACGAGGCGGCGGCGCGTGGG+AGG | - | chr8_1:89662125-89662144 | Msa1224620:CDS | 85.0% |
| ! | ACGAGGCGGCGGCGCGTGGG+AGG | - | chr8_1:89662125-89662144 | Msa1224620:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 89662058 | 89663261 | 89662058 | ID=Msa1224620;Name=Msa1224620 |
| chr8_1 | mRNA | 89662058 | 89663261 | 89662058 | ID=Msa1224620-mRNA-1;Parent=Msa1224620;Name=Msa1224620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|298 |
| chr8_1 | exon | 89662826 | 89663261 | 89662826 | ID=Msa1224620-mRNA-1:exon:32542;Parent=Msa1224620-mRNA-1 |
| chr8_1 | exon | 89662058 | 89662518 | 89662058 | ID=Msa1224620-mRNA-1:exon:32541;Parent=Msa1224620-mRNA-1 |
| chr8_1 | CDS | 89662826 | 89663261 | 89662826 | ID=Msa1224620-mRNA-1:cds;Parent=Msa1224620-mRNA-1 |
| chr8_1 | CDS | 89662058 | 89662518 | 89662058 | ID=Msa1224620-mRNA-1:cds;Parent=Msa1224620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
