AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1382020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382020 MtrunA17_Chr8g0379011 99.174 242 2 0 1 242 1 242 1.82e-180 495
Msa1382020 MtrunA17_Chr2g0325591 83.594 256 42 0 1 256 1 256 4.07e-167 462
Msa1382020 MtrunA17_Chr2g0283791 82.308 260 42 3 1 259 1 257 2.96e-157 437
Msa1382020 MtrunA17_Chr2g0316011 80.315 254 49 1 2 255 3 255 7.96e-154 429
Msa1382020 MtrunA17_Chr5g0418971 77.551 245 55 0 1 245 1 245 2.89e-143 402
Msa1382020 MtrunA17_Chr4g0043141 74.153 236 42 1 26 242 1 236 6.18e-128 362
Msa1382020 MtrunA17_Chr5g0426551 72.016 243 66 1 7 247 8 250 1.16e-127 362
Msa1382020 MtrunA17_Chr3g0132301 71.774 248 68 2 2 247 3 250 5.87e-127 360
Msa1382020 MtrunA17_Chr3g0133161 65.560 241 80 1 7 244 11 251 3.39e-115 330
Msa1382020 MtrunA17_Chr1g0164601 52.500 240 108 3 1 237 5 241 4.13e-77 234
Msa1382020 MtrunA17_Chr3g0082111 51.667 240 110 3 1 237 35 271 1.40e-74 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382020 AT2G42590.2 78.544 261 54 1 1 259 1 261 8.60e-154 429
Msa1382020 AT2G42590.1 78.244 262 54 2 1 259 1 262 7.39e-152 424
Msa1382020 AT2G42590.3 78.244 262 54 2 1 259 1 262 9.35e-152 424
Msa1382020 AT1G26480.1 77.869 244 54 0 2 245 5 248 9.06e-146 409
Msa1382020 AT1G22300.1 78.512 242 52 0 6 247 4 245 7.37e-138 388
Msa1382020 AT1G22300.2 78.512 242 52 0 6 247 4 245 9.38e-138 388
Msa1382020 AT1G34760.1 75.732 239 58 0 6 244 4 242 1.13e-136 385
Msa1382020 AT1G34760.2 75.732 239 58 0 6 244 4 242 1.63e-136 385
Msa1382020 AT1G22300.3 78.903 237 50 0 6 242 4 240 1.75e-135 382
Msa1382020 AT1G35160.1 70.968 248 70 1 2 247 6 253 8.62e-128 363
Msa1382020 AT1G78300.1 72.016 243 66 2 7 247 5 247 2.62e-127 362
Msa1382020 AT1G35160.2 72.803 239 63 2 2 238 6 244 3.89e-126 360
Msa1382020 AT5G38480.3 74.167 240 60 2 7 244 4 243 6.26e-126 358
Msa1382020 AT5G38480.2 74.167 240 60 2 7 244 4 243 6.26e-126 358
Msa1382020 AT4G09000.1 72.152 237 64 2 7 241 10 246 7.58e-126 358
Msa1382020 AT5G38480.1 71.542 253 69 3 7 257 4 255 2.00e-125 357
Msa1382020 AT3G02520.1 72.727 242 62 3 7 244 5 246 8.64e-124 353
Msa1382020 AT3G02520.2 72.727 242 62 3 7 244 5 246 8.64e-124 353
Msa1382020 AT4G09000.2 71.130 239 67 2 2 238 5 243 1.67e-123 354
Msa1382020 AT5G65430.1 68.826 247 74 1 1 244 1 247 5.79e-123 350
Msa1382020 AT5G10450.1 68.016 247 76 1 1 244 1 247 2.65e-122 348
Msa1382020 AT5G65430.2 68.852 244 73 1 1 241 1 244 1.33e-121 347
Msa1382020 AT5G10450.2 68.033 244 75 1 1 241 1 244 6.82e-121 345
Msa1382020 AT5G65430.3 69.295 241 71 1 1 238 1 241 1.92e-120 344
Msa1382020 AT5G10450.3 68.465 241 73 1 1 238 1 241 4.95e-120 343
Msa1382020 AT5G10450.4 68.465 241 73 1 1 238 1 241 1.52e-119 342
Msa1382020 AT5G16050.1 66.667 249 81 1 1 247 1 249 1.44e-116 335
Msa1382020 AT5G16050.2 66.667 249 81 1 1 247 1 249 1.44e-116 335
Msa1382020 AT1G78220.1 53.448 232 107 1 6 236 4 235 9.79e-85 253
Msa1382020 AT1G22290.2 50.000 214 83 5 6 214 4 198 8.61e-58 184
Msa1382020 AT1G22290.1 49.763 211 82 5 6 211 4 195 2.28e-57 182
Msa1382020 AT2G10450.1 61.702 47 17 1 204 249 16 62 3.67e-11 58.5

Find 93 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGATTATGCAGCTTCTA+AGG 0.184591 tig0020467:-67871 Msa1382020:CDS
TTGACGTACATATCTGAAAA+AGG 0.188396 tig0020467:-66596 Msa1382020:three_prime_UTR
AGGGGATTATTATCGGTATT+TGG 0.213214 tig0020467:-69280 Msa1382020:CDS
CAATAATATGCATACCTTTC+AGG 0.215945 tig0020467:+68045 None:intergenic
TTGAATTTCGAAAATTTCTA+AGG 0.246374 tig0020467:+70001 None:intergenic
TAATGATTACCTCCATCTTC+AGG 0.273259 tig0020467:+67818 None:intergenic
AGATCAAGATTATATTTATA+AGG 0.279327 tig0020467:+66552 None:intergenic
CATGATATCACTGCATATAT+TGG 0.293412 tig0020467:+69374 None:intergenic
ATCTGATGATGTTCATTCTT+TGG 0.297722 tig0020467:+66473 None:intergenic
AGAACGTAGTGGGTGCTCAT+AGG 0.371672 tig0020467:-69506 Msa1382020:CDS
TCTAAGGTTTGAACTTTGAA+TGG 0.372286 tig0020467:+70017 None:intergenic
TGGGTGCTCATAGGGCTTCA+TGG 0.373885 tig0020467:-69497 Msa1382020:CDS
GCATCCCATTCGATTGGGTT+TGG 0.375573 tig0020467:-68109 Msa1382020:CDS
GAACAAAAGGTGGAATCTTC+AGG 0.377055 tig0020467:-66899 Msa1382020:CDS
TCATTCCATGGAAGCATATC+AGG 0.381388 tig0020467:-69217 Msa1382020:intron
AAATGAAAGGGGATTATTAT+CGG 0.396472 tig0020467:-69287 Msa1382020:CDS
TCTTGTAGCCAACTGATAGA+AGG 0.402262 tig0020467:+69526 None:intergenic
TTCAGCTTGTTCAGCGAGCT+TGG 0.412085 tig0020467:+69913 None:intergenic
ACTCAATCCCACGCGCTATA+CGG 0.416056 tig0020467:+70092 None:intergenic
TCTATCCTCAATTGAGCATA+AGG 0.430983 tig0020467:-69469 Msa1382020:CDS
CCAACGCATCCCATTCGATT+GGG 0.436518 tig0020467:-68114 Msa1382020:CDS
TTTAACAGATGAGGAACAAA+AGG 0.436649 tig0020467:-66912 Msa1382020:intron
GGCATGTCACCTTGCTAAGC+AGG 0.441855 tig0020467:-67954 Msa1382020:CDS
TTCTTCCTTATGCTCAATTG+AGG 0.450139 tig0020467:+69464 None:intergenic
CTAAGGTTTGAACTTTGAAT+GGG 0.452240 tig0020467:+70018 None:intergenic
CCCTTCTGCTGCAGTGGAAG+CGG 0.455549 tig0020467:+68146 None:intergenic
AATGATTACCTCCATCTTCA+GGG 0.461652 tig0020467:+67819 None:intergenic
GAACGTAGTGGGTGCTCATA+GGG 0.465330 tig0020467:-69505 Msa1382020:CDS
CCCAATCGAATGGGATGCGT+TGG 0.472611 tig0020467:+68114 None:intergenic
GGAGAGTGGATGTCACGTTC+TGG 0.472912 tig0020467:+70113 None:intergenic
CTTATTCCATCGTCCTCTGC+TGG 0.475641 tig0020467:-69333 Msa1382020:CDS
AGCATAAGGAAGAATCTAAA+GGG 0.479531 tig0020467:-69455 Msa1382020:CDS
CGCTTCCACTGCAGCAGAAG+GGG 0.482864 tig0020467:-68145 Msa1382020:CDS
GAGCATAAGGAAGAATCTAA+AGG 0.492100 tig0020467:-69456 Msa1382020:CDS
GTGGAATCTTCAGGAGCTGT+TGG 0.492385 tig0020467:-66890 Msa1382020:CDS
ACCGCTTCCACTGCAGCAGA+AGG 0.492609 tig0020467:-68147 Msa1382020:CDS
AATCGAATGGGATGCGTTGG+AGG 0.498321 tig0020467:+68117 None:intergenic
ACGTTCCTTGGTGGAAGCCA+TGG 0.499863 tig0020467:+69955 None:intergenic
AGATATAAGCTAGGAATTTG+TGG 0.500000 tig0020467:-66728 Msa1382020:three_prime_UTR
TATTTGGCGGAATTTAAGAA+TGG 0.505553 tig0020467:-69264 Msa1382020:CDS
TGTGAAAAGGGATGTATCAC+TGG 0.505631 tig0020467:-66441 Msa1382020:three_prime_UTR
GAAAGTTAGCAGAATTTCCA+TGG 0.510429 tig0020467:-69972 Msa1382020:exon
TGTGAATGTGAAGAGGATAA+AGG 0.513152 tig0020467:-69427 Msa1382020:CDS
TCCAACGCATCCCATTCGAT+TGG 0.513679 tig0020467:-68115 Msa1382020:CDS
ACTTCTGACATCCCTGAAGA+TGG 0.519635 tig0020467:-67830 Msa1382020:CDS
TATGATGTTGTGATAAGAGC+AGG 0.522423 tig0020467:-66681 Msa1382020:three_prime_UTR
TAACTCCCCTTCTGCTGCAG+TGG 0.529859 tig0020467:+68140 None:intergenic
CGCATGAAGTCGAGGTTGCA+TGG 0.532638 tig0020467:-66650 Msa1382020:three_prime_UTR
GAGAGAAACCTTCTATCAGT+TGG 0.536428 tig0020467:-69534 Msa1382020:CDS
TGATGAAGCAATCTCCGAGT+TGG 0.540762 tig0020467:-67927 Msa1382020:CDS
AAAGCCAAACCCAATCGAAT+GGG 0.542021 tig0020467:+68105 None:intergenic
CAAAGCCAAACCCAATCGAA+TGG 0.549011 tig0020467:+68104 None:intergenic
ATTGATTATGCAGCTTCTAA+GGG 0.556365 tig0020467:-67870 Msa1382020:CDS
CATCAAATGCCTGCTTAGCA+AGG 0.556866 tig0020467:+67945 None:intergenic
AAGAGAAGCAGATATAAGCT+AGG 0.558918 tig0020467:-66737 Msa1382020:three_prime_UTR
GAATCTTCAGGAGCTGTTGG+AGG 0.564663 tig0020467:-66887 Msa1382020:CDS
CCGCTTCCACTGCAGCAGAA+GGG 0.566148 tig0020467:-68146 Msa1382020:CDS
GAACAAGCTGAACGCTATGA+AGG 0.567764 tig0020467:-69902 Msa1382020:intron
AACAGATGAGGAACAAAAGG+TGG 0.567855 tig0020467:-66909 Msa1382020:intron
AAGTTCGTCGCATGAAGTCG+AGG 0.569852 tig0020467:-66658 Msa1382020:three_prime_UTR
AGGTTTGAACTTTGAATGGG+AGG 0.574980 tig0020467:+70021 None:intergenic
GCAGACCTGATATGCTTCCA+TGG 0.579067 tig0020467:+69212 None:intergenic
CCCACGCGCTATACGGAGAG+TGG 0.585114 tig0020467:+70099 None:intergenic
GGTTTGAACTTTGAATGGGA+GGG 0.587989 tig0020467:+70022 None:intergenic
GGATTATTATCGGTATTTGG+CGG 0.591213 tig0020467:-69277 Msa1382020:CDS
ACGACGGAACATGTTGTTCG+TGG 0.592615 tig0020467:+70069 None:intergenic
AGAGGCTGCTGATCATTCCA+TGG 0.596075 tig0020467:-69229 Msa1382020:CDS
GACACTAGATTCACCAGCAG+AGG 0.596973 tig0020467:+69320 None:intergenic
GAATGGTGATGAGCGAAAAG+AGG 0.603840 tig0020467:-69247 Msa1382020:CDS
TCCACTCTCCGTATAGCGCG+TGG 0.606776 tig0020467:-70100 Msa1382020:five_prime_UTR
GTTGGCTACAAGAACGTAGT+GGG 0.620992 tig0020467:-69516 Msa1382020:CDS
TTTGGCATTTAGTATTAACA+AGG 0.622105 tig0020467:+66491 None:intergenic
TGTCAGAAGTCCACAATGTG+AGG 0.623979 tig0020467:+67843 None:intergenic
GATTCACCAGCAGAGGACGA+TGG 0.625143 tig0020467:+69327 None:intergenic
AATTTCCATGGCTTCCACCA+AGG 0.626045 tig0020467:-69960 Msa1382020:exon
TTGGCATTTAGTATTAACAA+GGG 0.630956 tig0020467:+66492 None:intergenic
TGTTGGAGGTGAAAATGCAT+AGG 0.631634 tig0020467:-66873 Msa1382020:intron
GAGTGGATGTCACGTTCTGG+CGG 0.636081 tig0020467:+70116 None:intergenic
GAGCATGGGCGGTAAGAATG+TGG 0.642309 tig0020467:-66389 Msa1382020:three_prime_UTR
TTATGTGAAATGAGCATGGG+CGG 0.650403 tig0020467:-66400 Msa1382020:three_prime_UTR
CGAGTTGGATACTCTGAGTG+AGG 0.651430 tig0020467:-67912 Msa1382020:CDS
TAAGGGACAACCTCACATTG+TGG 0.657719 tig0020467:-67853 Msa1382020:CDS
ACAAGACAAGCTACGCACGA+CGG 0.660960 tig0020467:+70053 None:intergenic
TCTGACATCCCTGAAGATGG+AGG 0.665639 tig0020467:-67827 Msa1382020:intron
AGTTGGCTACAAGAACGTAG+TGG 0.666503 tig0020467:-69517 Msa1382020:CDS
CTCACTCAGAGTATCCAACT+CGG 0.668173 tig0020467:+67913 None:intergenic
CCACTCTCCGTATAGCGCGT+GGG 0.669746 tig0020467:-70099 Msa1382020:five_prime_UTR
GCTAGATGTTGAGTTGACAG+TGG 0.686884 tig0020467:-69559 Msa1382020:CDS
GGAATGATGTGAATGTGAAG+AGG 0.689723 tig0020467:-69434 Msa1382020:CDS
AAAGGAGTATAGACACAAGG+TGG 0.694713 tig0020467:-69409 Msa1382020:CDS
GTGCTCATAGGGCTTCATGG+AGG 0.700802 tig0020467:-69494 Msa1382020:CDS
GATAAAGGAGTATAGACACA+AGG 0.704247 tig0020467:-69412 Msa1382020:CDS
GGTGGAAGCAATGAAGAATG+TGG 0.728314 tig0020467:-69586 Msa1382020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATAAAAATAAATGATT+CGG + tig0020467:68675-68694 None:intergenic 10.0%
!!! ATTTTTATTTGATAGAATTA+AGG - tig0020467:68683-68702 Msa1382020:intron 10.0%
!! ATCATCATAAAAAAAATCAA+GGG + tig0020467:66658-66677 None:intergenic 15.0%
!! AATCATCATAAAAAAAATCA+AGG + tig0020467:66659-66678 None:intergenic 15.0%
!! ATTGATTAAGAAATTGAAAT+TGG - tig0020467:66722-66741 Msa1382020:three_prime_UTR 15.0%
!! TTGATTAAGAAATTGAAATT+GGG - tig0020467:66723-66742 Msa1382020:three_prime_UTR 15.0%
!!! TCTTTTTCTATAAAATGAAA+GGG - tig0020467:67103-67122 Msa1382020:intron 15.0%
!!! TAAAATCAATTTTATGTGTT+TGG + tig0020467:67696-67715 None:intergenic 15.0%
!!! AAAAATTGATTTTGGATAAA+AGG + tig0020467:67839-67858 None:intergenic 15.0%
!! TAGTTATAGGATAAATATAA+AGG + tig0020467:68081-68100 None:intergenic 15.0%
!!! TTTTTTAAATATTATGGAAG+AGG - tig0020467:69254-69273 Msa1382020:CDS 15.0%
!! AGATCAAGATTATATTTATA+AGG + tig0020467:69853-69872 None:intergenic 15.0%
!! TTGAATTTCGAAAATTTCTA+AGG + tig0020467:66404-66423 None:intergenic 20.0%
!! AAAATGGAAGTAAAGAAAAT+GGG + tig0020467:66540-66559 None:intergenic 20.0%
!! AAAAATGGAAGTAAAGAAAA+TGG + tig0020467:66541-66560 None:intergenic 20.0%
!!! TGAACTTTAAGAGAAAAAAA+TGG + tig0020467:66556-66575 None:intergenic 20.0%
!! ACTCTTAAATCTGTATATAT+AGG + tig0020467:66599-66618 None:intergenic 20.0%
!! TCATCATAAAAAAAATCAAG+GGG + tig0020467:66657-66676 None:intergenic 20.0%
!!! TTGAAATTTTCATTGTGTTT+TGG - tig0020467:66698-66717 Msa1382020:three_prime_UTR 20.0%
!!! GTCTTTTTCTATAAAATGAA+AGG - tig0020467:67102-67121 Msa1382020:intron 20.0%
!!! CTTTTTCTATAAAATGAAAG+GGG - tig0020467:67104-67123 Msa1382020:intron 20.0%
!!! AGAATTGATTTTGAAATGTT+TGG - tig0020467:67441-67460 Msa1382020:intron 20.0%
!!! TTGATTTTGTATTCAGAATT+TGG - tig0020467:67478-67497 Msa1382020:intron 20.0%
!! ATGAGTTAAAAAATCTTGTT+TGG + tig0020467:67802-67821 None:intergenic 20.0%
!! TTATGAATTATCAGATTAAC+AGG + tig0020467:68226-68245 None:intergenic 20.0%
!! ATAGAATTAAGGATGAAAAT+AGG - tig0020467:68694-68713 Msa1382020:intron 20.0%
!! TATCTGTATTTACTTTAAGT+AGG + tig0020467:68870-68889 None:intergenic 20.0%
!! TTAAATATGTGAAAAACTGA+TGG + tig0020467:68989-69008 None:intergenic 20.0%
!!! TCAGTTTTTCACATATTTAA+AGG - tig0020467:68989-69008 Msa1382020:intron 20.0%
!! AAATTATAAAGAAAATAGCC+AGG + tig0020467:69440-69459 None:intergenic 20.0%
!!! TTTTCATATCTGTTTTCTTT+TGG - tig0020467:69593-69612 Msa1382020:CDS 20.0%
!!! AAACATAACTTTTGTTAAGT+CGG + tig0020467:69638-69657 None:intergenic 20.0%
!! AAAAAAAGTCATAAGAAAAG+AGG + tig0020467:70075-70094 None:intergenic 20.0%
!!! TCTTATGACTTTTTTTTAAG+AGG - tig0020467:70079-70098 Msa1382020:five_prime_UTR 20.0%
!!! CTTATGACTTTTTTTTAAGA+GGG - tig0020467:70080-70099 Msa1382020:five_prime_UTR 20.0%
!! GTTGTATACTTTTACTGTTT+TGG - tig0020467:66782-66801 Msa1382020:intron 25.0%
! AAATGAAAGGGGATTATTAT+CGG - tig0020467:67115-67134 Msa1382020:intron 25.0%
!! CAGAACTTTTTATATCTTTG+CGG - tig0020467:67220-67239 Msa1382020:intron 25.0%
! TATATCTTTGCGGTTTAAAA+TGG - tig0020467:67230-67249 Msa1382020:intron 25.0%
!!! GGAGATAAAATTGATTTTAG+AGG - tig0020467:67415-67434 Msa1382020:intron 25.0%
! ATGATACGTTAATGTAAAAG+TGG + tig0020467:67552-67571 None:intergenic 25.0%
! AGTTAAAAGCTACAGATAAT+AGG + tig0020467:67779-67798 None:intergenic 25.0%
!!! ATGATTTGTAGTTCATTTTG+TGG - tig0020467:67953-67972 Msa1382020:CDS 25.0%
! AATATCTTATCAGAGATCAT+AGG + tig0020467:68104-68123 None:intergenic 25.0%
!!! AAAAAAGTATGTTCTAGCTT+GGG + tig0020467:68752-68771 None:intergenic 25.0%
!! AAAAAAAGTATGTTCTAGCT+TGG + tig0020467:68753-68772 None:intergenic 25.0%
!! TTAGATTTTGTACTTTGTCT+TGG - tig0020467:68917-68936 Msa1382020:intron 25.0%
!! ATAAAGTCAGATTTTCTAGA+AGG - tig0020467:69037-69056 Msa1382020:intron 25.0%
!! ATGCAATTTGTTTATGTAAC+TGG - tig0020467:69129-69148 Msa1382020:intron 25.0%
!!! ATTTGATTTTGAACACGTTA+AGG + tig0020467:69178-69197 None:intergenic 25.0%
! AATAAGTACATAAGAAACTG+AGG + tig0020467:69202-69221 None:intergenic 25.0%
! AAAATATGAGTAAAGTTGAC+AGG + tig0020467:69402-69421 None:intergenic 25.0%
! TTGGCATTTAGTATTAACAA+GGG + tig0020467:69913-69932 None:intergenic 25.0%
! TTTGGCATTTAGTATTAACA+AGG + tig0020467:69914-69933 None:intergenic 25.0%
!!! AGATTCATTTTAGTGTGAAA+AGG - tig0020467:69948-69967 Msa1382020:CDS 25.0%
!!! GATTCATTTTAGTGTGAAAA+GGG - tig0020467:69949-69968 Msa1382020:CDS 25.0%
!! ATTTTATGTGAAATGAGCAT+GGG - tig0020467:69999-70018 Msa1382020:five_prime_UTR 25.0%
CTAAGGTTTGAACTTTGAAT+GGG + tig0020467:66387-66406 None:intergenic 30.0%
! TCTAAGGTTTGAACTTTGAA+TGG + tig0020467:66388-66407 None:intergenic 30.0%
AAACATCAAGCTTAGAACAT+TGG + tig0020467:66624-66643 None:intergenic 30.0%
!!! ACTGTTTTGGTTGATAGAAA+TGG - tig0020467:66795-66814 Msa1382020:intron 30.0%
AGCATAAGGAAGAATCTAAA+GGG - tig0020467:66947-66966 Msa1382020:intron 30.0%
CATGATATCACTGCATATAT+TGG + tig0020467:67031-67050 None:intergenic 30.0%
TATTTGGCGGAATTTAAGAA+TGG - tig0020467:67138-67157 Msa1382020:intron 30.0%
ATGTCTATCTTAACTGAAGA+TGG - tig0020467:67324-67343 Msa1382020:intron 30.0%
TAGTGAATTAAAGAAGCGAA+GGG + tig0020467:67367-67386 None:intergenic 30.0%
TGGATTGAACAATGAATTCA+AGG + tig0020467:67532-67551 None:intergenic 30.0%
!! TATGTGTTTGGAATCACTTT+TGG + tig0020467:67684-67703 None:intergenic 30.0%
! AATAGACACACTTGATTTTG+CGG + tig0020467:67866-67885 None:intergenic 30.0%
TGTTTCATGTAGAGAAGAAA+AGG - tig0020467:68016-68035 Msa1382020:intron 30.0%
TGCAACACTTATTTGAATGA+AGG - tig0020467:68138-68157 Msa1382020:CDS 30.0%
ATTATCAGATTAACAGGACT+TGG + tig0020467:68220-68239 None:intergenic 30.0%
! AAATTTTGAACTCTCCTGAA+AGG - tig0020467:68343-68362 Msa1382020:intron 30.0%
CAATAATATGCATACCTTTC+AGG + tig0020467:68360-68379 None:intergenic 30.0%
ATTGATTATGCAGCTTCTAA+GGG - tig0020467:68532-68551 Msa1382020:intron 30.0%
!! TTCTTTTCTAGTATGTTAGC+TGG - tig0020467:68620-68639 Msa1382020:intron 30.0%
!! AAAAAGTATGTTCTAGCTTG+GGG + tig0020467:68751-68770 None:intergenic 30.0%
!! GTCTAGTCTTATAGCTAAAT+AGG + tig0020467:68809-68828 None:intergenic 30.0%
TGTATTTACTTTAAGTAGGC+CGG + tig0020467:68866-68885 None:intergenic 30.0%
TGAAAAGCTTGACAAGTTTA+TGG + tig0020467:68944-68963 None:intergenic 30.0%
AATATGTGAAAAACTGATGG+AGG + tig0020467:68986-69005 None:intergenic 30.0%
TTTGTTTATGTAACTGGTAG+TGG - tig0020467:69135-69154 Msa1382020:intron 30.0%
TAAACAGATCGCTTAATTGT+TGG + tig0020467:69352-69371 None:intergenic 30.0%
!! TTTGCTGTTATTTCAAAACC+TGG - tig0020467:69419-69438 Msa1382020:CDS 30.0%
TTTAACAGATGAGGAACAAA+AGG - tig0020467:69490-69509 Msa1382020:CDS 30.0%
AACTAGATTTGATCAGAGTT+CGG + tig0020467:69568-69587 None:intergenic 30.0%
AGATATAAGCTAGGAATTTG+TGG - tig0020467:69674-69693 Msa1382020:intron 30.0%
TTGACGTACATATCTGAAAA+AGG - tig0020467:69806-69825 Msa1382020:intron 30.0%
TGACGTACATATCTGAAAAA+GGG - tig0020467:69807-69826 Msa1382020:intron 30.0%
! ATCTGATGATGTTCATTCTT+TGG + tig0020467:69932-69951 None:intergenic 30.0%
! CATTTTATGTGAAATGAGCA+TGG - tig0020467:69998-70017 Msa1382020:five_prime_UTR 30.0%
GAAAGTTAGCAGAATTTCCA+TGG - tig0020467:66430-66449 Msa1382020:three_prime_UTR 35.0%
!! AAGAAAATGGGTTAGAGAGA+AGG + tig0020467:66528-66547 None:intergenic 35.0%
! GTTCTAAGCTTGATGTTTCT+TGG - tig0020467:66626-66645 Msa1382020:three_prime_UTR 35.0%
!!! GTTTTGGTTGATAGAAATGG+TGG - tig0020467:66798-66817 Msa1382020:intron 35.0%
TCTATCCTCAATTGAGCATA+AGG - tig0020467:66933-66952 Msa1382020:intron 35.0%
TTCTTCCTTATGCTCAATTG+AGG + tig0020467:66941-66960 None:intergenic 35.0%
GAGCATAAGGAAGAATCTAA+AGG - tig0020467:66946-66965 Msa1382020:intron 35.0%
TGTGAATGTGAAGAGGATAA+AGG - tig0020467:66975-66994 Msa1382020:intron 35.0%
! GATAAAGGAGTATAGACACA+AGG - tig0020467:66990-67009 Msa1382020:intron 35.0%
AGGGGATTATTATCGGTATT+TGG - tig0020467:67122-67141 Msa1382020:intron 35.0%
GGATTATTATCGGTATTTGG+CGG - tig0020467:67125-67144 Msa1382020:intron 35.0%
! GTTTTCTTTTCTGCCTATGA+TGG - tig0020467:67260-67279 Msa1382020:intron 35.0%
ACACACATGATAACCATCAT+AGG + tig0020467:67276-67295 None:intergenic 35.0%
CTAGTGAATTAAAGAAGCGA+AGG + tig0020467:67368-67387 None:intergenic 35.0%
!! ATTCACTAGTCTTGTATGCT+TGG - tig0020467:67379-67398 Msa1382020:intron 35.0%
! TGTATGCTTGGTTTCACTTT+TGG - tig0020467:67391-67410 Msa1382020:intron 35.0%
!! GCGGTGACAAAAATTGATTT+TGG + tig0020467:67847-67866 None:intergenic 35.0%
ATATCACCTATGACAAGTAC+CGG + tig0020467:67895-67914 None:intergenic 35.0%
CAGAGATCATAGGTAGTTAT+AGG + tig0020467:68094-68113 None:intergenic 35.0%
TTTGAACTCTCCTGAAACTT+CGG - tig0020467:68391-68410 Msa1382020:intron 35.0%
AAACATATCACCGAAGTTTC+AGG + tig0020467:68404-68423 None:intergenic 35.0%
ATGACACTCCTCATATTTCA+GGG - tig0020467:68427-68446 Msa1382020:intron 35.0%
! CATTGATTATGCAGCTTCTA+AGG - tig0020467:68531-68550 Msa1382020:intron 35.0%
AATGATTACCTCCATCTTCA+GGG + tig0020467:68586-68605 None:intergenic 35.0%
TAATGATTACCTCCATCTTC+AGG + tig0020467:68587-68606 None:intergenic 35.0%
TAGCTATAAGACTAGACTTC+TGG - tig0020467:68812-68831 Msa1382020:intron 35.0%
TGGCTACCAAAAAATCCATT+TGG - tig0020467:68832-68851 Msa1382020:intron 35.0%
GGCTACCAAAAAATCCATTT+GGG - tig0020467:68833-68852 Msa1382020:intron 35.0%
TTCCTACAGCATAGAAAATC+TGG + tig0020467:69099-69118 None:intergenic 35.0%
!! CAGTTTTGACATTTTCGTCA+TGG - tig0020467:69373-69392 Msa1382020:CDS 35.0%
CCTCATCTGTTAAAAAAACG+AGG + tig0020467:69484-69503 None:intergenic 35.0%
!!! CCTCGTTTTTTTAACAGATG+AGG - tig0020467:69481-69500 Msa1382020:CDS 35.0%
AAGAGAAGCAGATATAAGCT+AGG - tig0020467:69665-69684 Msa1382020:intron 35.0%
TATGATGTTGTGATAAGAGC+AGG - tig0020467:69721-69740 Msa1382020:intron 35.0%
GGTTTGAACTTTGAATGGGA+GGG + tig0020467:66383-66402 None:intergenic 40.0%
AGGTTTGAACTTTGAATGGG+AGG + tig0020467:66384-66403 None:intergenic 40.0%
GAGAGAAACCTTCTATCAGT+TGG - tig0020467:66868-66887 Msa1382020:intron 40.0%
TCTTGTAGCCAACTGATAGA+AGG + tig0020467:66879-66898 None:intergenic 40.0%
GGAATGATGTGAATGTGAAG+AGG - tig0020467:66968-66987 Msa1382020:intron 40.0%
! AAAGGAGTATAGACACAAGG+TGG - tig0020467:66993-67012 Msa1382020:intron 40.0%
! TCATTCCATGGAAGCATATC+AGG - tig0020467:67185-67204 Msa1382020:intron 40.0%
TGGTTATCATGTGTGTTGTG+TGG - tig0020467:67280-67299 Msa1382020:intron 40.0%
TGGATATGTAGTTGCTTGCT+TGG - tig0020467:67300-67319 Msa1382020:intron 40.0%
!! ATGCTTGGTTTCACTTTTGG+AGG - tig0020467:67394-67413 Msa1382020:intron 40.0%
TTTGTCACCTCAGAACCAAA+CGG - tig0020467:67647-67666 Msa1382020:intron 40.0%
!! AAGTGTGTCTATTTCTGAGC+CGG - tig0020467:67873-67892 Msa1382020:CDS 40.0%
CATAGGTGATATGAGCTTTG+AGG - tig0020467:67903-67922 Msa1382020:CDS 40.0%
!! ATGAGCTTTGAGGACTTGTT+AGG - tig0020467:67913-67932 Msa1382020:CDS 40.0%
! ACTTGTTAGGTAGGAGAAAG+TGG - tig0020467:67926-67945 Msa1382020:CDS 40.0%
CATGTAGAGAAGAAAAGGAG+CGG - tig0020467:68021-68040 Msa1382020:intron 40.0%
ATGTAGAGAAGAAAAGGAGC+GGG - tig0020467:68022-68041 Msa1382020:intron 40.0%
ATCAGATTAACAGGACTTGG+CGG + tig0020467:68217-68236 None:intergenic 40.0%
AAAGCCAAACCCAATCGAAT+GGG + tig0020467:68300-68319 None:intergenic 40.0%
CATGACACTCCTCATATTTC+AGG - tig0020467:68426-68445 Msa1382020:intron 40.0%
! GACTCGATCTGAAATGTGAA+TGG - tig0020467:68642-68661 Msa1382020:intron 40.0%
AAATAGGTCAAACCAACCGA+CGG - tig0020467:68710-68729 Msa1382020:intron 40.0%
!!! TGAGGCCCAAATGGATTTTT+TGG + tig0020467:68841-68860 None:intergenic 40.0%
CTACAGCATAGAAAATCTGG+TGG + tig0020467:69096-69115 None:intergenic 40.0%
! CACCAGATTTTCTATGCTGT+AGG - tig0020467:69094-69113 Msa1382020:intron 40.0%
TCAAAATCCATGAACAAGCG+AGG - tig0020467:69300-69319 Msa1382020:CDS 40.0%
CAAAATCCATGAACAAGCGA+GGG - tig0020467:69301-69320 Msa1382020:CDS 40.0%
AAAATCCATGAACAAGCGAG+GGG - tig0020467:69302-69321 Msa1382020:CDS 40.0%
AACAGATGAGGAACAAAAGG+TGG - tig0020467:69493-69512 Msa1382020:CDS 40.0%
GAACAAAAGGTGGAATCTTC+AGG - tig0020467:69503-69522 Msa1382020:CDS 40.0%
TGTTGGAGGTGAAAATGCAT+AGG - tig0020467:69529-69548 Msa1382020:CDS 40.0%
TGTGAAAAGGGATGTATCAC+TGG - tig0020467:69961-69980 Msa1382020:exon 40.0%
TTATGTGAAATGAGCATGGG+CGG - tig0020467:70002-70021 Msa1382020:five_prime_UTR 40.0%
AATTTCCATGGCTTCCACCA+AGG - tig0020467:66442-66461 Msa1382020:three_prime_UTR 45.0%
! GAAGTTTTCACGTTCCTTGG+TGG + tig0020467:66459-66478 None:intergenic 45.0%
! GACGAAGTTTTCACGTTCCT+TGG + tig0020467:66462-66481 None:intergenic 45.0%
GAACAAGCTGAACGCTATGA+AGG - tig0020467:66500-66519 Msa1382020:three_prime_UTR 45.0%
GGTGGAAGCAATGAAGAATG+TGG - tig0020467:66816-66835 Msa1382020:intron 45.0%
!! GCTAGATGTTGAGTTGACAG+TGG - tig0020467:66843-66862 Msa1382020:intron 45.0%
AGTTGGCTACAAGAACGTAG+TGG - tig0020467:66885-66904 Msa1382020:CDS 45.0%
GTTGGCTACAAGAACGTAGT+GGG - tig0020467:66886-66905 Msa1382020:CDS 45.0%
! GAATGGTGATGAGCGAAAAG+AGG - tig0020467:67155-67174 Msa1382020:intron 45.0%
ACCTCAGAACCAAACGGTTT+AGG - tig0020467:67653-67672 Msa1382020:intron 45.0%
!! TCCTAAACCGTTTGGTTCTG+AGG + tig0020467:67657-67676 None:intergenic 45.0%
! TTGGCTCTTCCTAAACCGTT+TGG + tig0020467:67665-67684 None:intergenic 45.0%
!! GCTTTGAGGACTTGTTAGGT+AGG - tig0020467:67917-67936 Msa1382020:CDS 45.0%
AAAAGGAGCGGGAAGATAAG+AGG - tig0020467:68033-68052 Msa1382020:intron 45.0%
AAAGGAGCGGGAAGATAAGA+GGG - tig0020467:68034-68053 Msa1382020:intron 45.0%
GGCATCAACCAATGTGAAGT+TGG - tig0020467:68159-68178 Msa1382020:intron 45.0%
CTCAACAGCCAACTTCACAT+TGG + tig0020467:68170-68189 None:intergenic 45.0%
CAAAGCCAAACCCAATCGAA+TGG + tig0020467:68301-68320 None:intergenic 45.0%
GTGACATGCCCTGAAATATG+AGG + tig0020467:68438-68457 None:intergenic 45.0%
CATCAAATGCCTGCTTAGCA+AGG + tig0020467:68460-68479 None:intergenic 45.0%
TGATGAAGCAATCTCCGAGT+TGG - tig0020467:68475-68494 Msa1382020:intron 45.0%
! CTCACTCAGAGTATCCAACT+CGG + tig0020467:68492-68511 None:intergenic 45.0%
TAAGGGACAACCTCACATTG+TGG - tig0020467:68549-68568 Msa1382020:intron 45.0%
TGTCAGAAGTCCACAATGTG+AGG + tig0020467:68562-68581 None:intergenic 45.0%
ACTTCTGACATCCCTGAAGA+TGG - tig0020467:68572-68591 Msa1382020:intron 45.0%
AATAGGTCAAACCAACCGAC+GGG - tig0020467:68711-68730 Msa1382020:intron 45.0%
!! GTATGTTCTAGCTTGGGGTA+GGG + tig0020467:68746-68765 None:intergenic 45.0%
!! AGTATGTTCTAGCTTGGGGT+AGG + tig0020467:68747-68766 None:intergenic 45.0%
TGTGAAAAACTGATGGAGGC+TGG + tig0020467:68982-69001 None:intergenic 45.0%
GGAGGTGAAAATGCATAGGT+AGG - tig0020467:69533-69552 Msa1382020:CDS 45.0%
!!! AAAACATTTTTTAAATATTA+TGG - tig0020467:69248-69267 Msa1382020:CDS 5.0%
ACTCAATCCCACGCGCTATA+CGG + tig0020467:66313-66332 None:intergenic 50.0%
ACGACGGAACATGTTGTTCG+TGG + tig0020467:66336-66355 None:intergenic 50.0%
ACAAGACAAGCTACGCACGA+CGG + tig0020467:66352-66371 None:intergenic 50.0%
! TTCAGCTTGTTCAGCGAGCT+TGG + tig0020467:66492-66511 None:intergenic 50.0%
!! AGAACGTAGTGGGTGCTCAT+AGG - tig0020467:66896-66915 Msa1382020:CDS 50.0%
!! GAACGTAGTGGGTGCTCATA+GGG - tig0020467:66897-66916 Msa1382020:CDS 50.0%
CTTATTCCATCGTCCTCTGC+TGG - tig0020467:67069-67088 Msa1382020:intron 50.0%
GACACTAGATTCACCAGCAG+AGG + tig0020467:67085-67104 None:intergenic 50.0%
AGAGGCTGCTGATCATTCCA+TGG - tig0020467:67173-67192 Msa1382020:intron 50.0%
GCAGACCTGATATGCTTCCA+TGG + tig0020467:67193-67212 None:intergenic 50.0%
TCTGAGCCGGTACTTGTCAT+AGG - tig0020467:67886-67905 Msa1382020:CDS 50.0%
AAGGAGCGGGAAGATAAGAG+GGG - tig0020467:68035-68054 Msa1382020:intron 50.0%
AATCGAATGGGATGCGTTGG+AGG + tig0020467:68288-68307 None:intergenic 50.0%
TCCAACGCATCCCATTCGAT+TGG - tig0020467:68287-68306 Msa1382020:intron 50.0%
CCAACGCATCCCATTCGATT+GGG - tig0020467:68288-68307 Msa1382020:intron 50.0%
GCATCCCATTCGATTGGGTT+TGG - tig0020467:68293-68312 Msa1382020:intron 50.0%
! CGAGTTGGATACTCTGAGTG+AGG - tig0020467:68490-68509 Msa1382020:intron 50.0%
TCTGACATCCCTGAAGATGG+AGG - tig0020467:68575-68594 Msa1382020:intron 50.0%
AATCCATTTGGGCCTCAGAC+CGG - tig0020467:68844-68863 Msa1382020:intron 50.0%
ACTTTAAGTAGGCCGGTCTG+AGG + tig0020467:68859-68878 None:intergenic 50.0%
GTGGAATCTTCAGGAGCTGT+TGG - tig0020467:69512-69531 Msa1382020:CDS 50.0%
GAATCTTCAGGAGCTGTTGG+AGG - tig0020467:69515-69534 Msa1382020:CDS 50.0%
AAGTTCGTCGCATGAAGTCG+AGG - tig0020467:69744-69763 Msa1382020:intron 50.0%
GGAGAGTGGATGTCACGTTC+TGG + tig0020467:66292-66311 None:intergenic 55.0%
ACGTTCCTTGGTGGAAGCCA+TGG + tig0020467:66450-66469 None:intergenic 55.0%
TGGGTGCTCATAGGGCTTCA+TGG - tig0020467:66905-66924 Msa1382020:CDS 55.0%
GTGCTCATAGGGCTTCATGG+AGG - tig0020467:66908-66927 Msa1382020:intron 55.0%
GATTCACCAGCAGAGGACGA+TGG + tig0020467:67078-67097 None:intergenic 55.0%
AGGAGCGGGAAGATAAGAGG+GGG - tig0020467:68036-68055 Msa1382020:intron 55.0%
TAACTCCCCTTCTGCTGCAG+TGG + tig0020467:68265-68284 None:intergenic 55.0%
CCCAATCGAATGGGATGCGT+TGG + tig0020467:68291-68310 None:intergenic 55.0%
GGCATGTCACCTTGCTAAGC+AGG - tig0020467:68448-68467 Msa1382020:intron 55.0%
GAATGCCCCTCGCTTGTTCA+TGG + tig0020467:69310-69329 None:intergenic 55.0%
CGCATGAAGTCGAGGTTGCA+TGG - tig0020467:69752-69771 Msa1382020:intron 55.0%
GAGCATGGGCGGTAAGAATG+TGG - tig0020467:70013-70032 Msa1382020:five_prime_UTR 55.0%
TCCACTCTCCGTATAGCGCG+TGG - tig0020467:66302-66321 Msa1382020:three_prime_UTR 60.0%
CCACTCTCCGTATAGCGCGT+GGG - tig0020467:66303-66322 Msa1382020:three_prime_UTR 60.0%
ACCGCTTCCACTGCAGCAGA+AGG - tig0020467:68255-68274 Msa1382020:intron 60.0%
CCCTTCTGCTGCAGTGGAAG+CGG + tig0020467:68259-68278 None:intergenic 60.0%
CCGCTTCCACTGCAGCAGAA+GGG - tig0020467:68256-68275 Msa1382020:intron 60.0%
CGCTTCCACTGCAGCAGAAG+GGG - tig0020467:68257-68276 Msa1382020:intron 60.0%
AACCAACCGACGGGAGCCAA+TGG - tig0020467:68720-68739 Msa1382020:intron 60.0%
CTAGCTTGGGGTAGGGCCAT+TGG + tig0020467:68739-68758 None:intergenic 60.0%
CCCACGCGCTATACGGAGAG+TGG + tig0020467:66306-66325 None:intergenic 65.0%
!! GTAGGGCCATTGGCTCCCGT+CGG + tig0020467:68729-68748 None:intergenic 65.0%
! AGGCCGGTCTGAGGCCCAAA+TGG + tig0020467:68850-68869 None:intergenic 65.0%
!! GGCCATTGGCTCCCGTCGGT+TGG + tig0020467:68725-68744 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020467 gene 66287 70137 66287 ID=Msa1382020;Name=Msa1382020
tig0020467 mRNA 66287 70137 66287 ID=Msa1382020-mRNA-1;Parent=Msa1382020;Name=Msa1382020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=162|1|1|1|0.8|0.83|6|488|259
tig0020467 exon 66287 66774 66287 ID=Msa1382020-mRNA-1:exon:7907;Parent=Msa1382020-mRNA-1
tig0020467 exon 66874 66926 66874 ID=Msa1382020-mRNA-1:exon:7906;Parent=Msa1382020-mRNA-1
tig0020467 exon 67828 67976 67828 ID=Msa1382020-mRNA-1:exon:7905;Parent=Msa1382020-mRNA-1
tig0020467 exon 68060 68169 68060 ID=Msa1382020-mRNA-1:exon:7904;Parent=Msa1382020-mRNA-1
tig0020467 exon 69218 69612 69218 ID=Msa1382020-mRNA-1:exon:7903;Parent=Msa1382020-mRNA-1
tig0020467 exon 69903 70137 69903 ID=Msa1382020-mRNA-1:exon:7902;Parent=Msa1382020-mRNA-1
tig0020467 five_prime_UTR 69976 70137 69976 ID=Msa1382020-mRNA-1:five_prime_utr;Parent=Msa1382020-mRNA-1
tig0020467 CDS 69903 69975 69903 ID=Msa1382020-mRNA-1:cds;Parent=Msa1382020-mRNA-1
tig0020467 CDS 69218 69612 69218 ID=Msa1382020-mRNA-1:cds;Parent=Msa1382020-mRNA-1
tig0020467 CDS 68060 68169 68060 ID=Msa1382020-mRNA-1:cds;Parent=Msa1382020-mRNA-1
tig0020467 CDS 67828 67976 67828 ID=Msa1382020-mRNA-1:cds;Parent=Msa1382020-mRNA-1
tig0020467 CDS 66874 66926 66874 ID=Msa1382020-mRNA-1:cds;Parent=Msa1382020-mRNA-1
tig0020467 three_prime_UTR 66287 66774 66287 ID=Msa1382020-mRNA-1:three_prime_utr;Parent=Msa1382020-mRNA-1
Gene Sequence

>Msa1382020

ATGGCTTCCACCAAGGAACGTGAAAACTTCGTCTACATCGCCAAGCTCGCTGAACAAGCTGAACGCTATGAAGAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAGATGTTGAGTTGACAGTGGAAGAGAGAAACCTTCTATCAGTTGGCTACAAGAACGTAGTGGGTGCTCATAGGGCTTCATGGAGGATTCTATCCTCAATTGAGCATAAGGAAGAATCTAAAGGGAATGATGTGAATGTGAAGAGGATAAAGGAGTATAGACACAAGGTGGAGTCTGAATTATCCAATATATGCAGTGATATCATGTCTATTATTGATGATCATCTTATTCCATCGTCCTCTGCTGGTGAATCTAGTGTCTTTTTCTATAAAATGAAAGGGGATTATTATCGGTATTTGGCGGAATTTAAGAATGGTGATGAGCGAAAAGAGGCTGCTGATCATTCCATGGAAGCATATCAGACCGCTTCCACTGCAGCAGAAGGGGAGTTACCTCCAACGCATCCCATTCGATTGGGTTTGGCTTTGAACTTCTCTGTGTTTTATTATGAAATTTTGAACTCTCCTGAAAGGGCATGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCCGAGTTGGATACTCTGAGTGAGGAGTCTTACAAAGACAGCACATTGATTATGCAGCTTCTAAGGGACAACCTCACATTGTGGACTTCTGACATCCCTGAAGATGGAGATGAGGAACAAAAGGTGGAATCTTCAGGAGCTGTTGGAGGTGAAAATGCATAG

Protein sequence

>Msa1382020

MASTKERENFVYIAKLAEQAERYEEMVEAMKNVAKLDVELTVEERNLLSVGYKNVVGAHRASWRILSSIEHKEESKGNDVNVKRIKEYRHKVESELSNICSDIMSIIDDHLIPSSSAGESSVFFYKMKGDYYRYLAEFKNGDERKEAADHSMEAYQTASTAAEGELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGDEEQKVESSGAVGGENA*