Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1225530 | Msa1243170 | -0.822848 | 1.901415e-53 | -8.615850e-47 |
| Msa0264740 | Msa1225530 | 0.965003 | 4.801819e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACACTGGGGCATATATTT+TGG | 0.168374 | 8_1:+90989069 | None:intergenic |
| AACCCTAACCTTTGAAGATT+TGG | 0.216041 | 8_1:+90991134 | None:intergenic |
| GCGACGTGGGGAATGGTTAT+TGG | 0.245644 | 8_1:+90991306 | None:intergenic |
| CGGTTCTGCAGAGATGGTTT+TGG | 0.250126 | 8_1:+90989506 | None:intergenic |
| CGACGTGGGGAATGGTTATT+GGG | 0.261317 | 8_1:+90991307 | None:intergenic |
| GTACAATCTACTCATGTCTA+TGG | 0.321807 | 8_1:+90988907 | None:intergenic |
| ACCCTAACCTTTGAAGATTT+GGG | 0.323946 | 8_1:+90991135 | None:intergenic |
| GAGACTGCATTTCATTTGAT+TGG | 0.329337 | 8_1:-90989092 | Msa1225530:three_prime_UTR |
| TGTAATAGTACATGTCAAAA+TGG | 0.338938 | 8_1:-90988962 | Msa1225530:three_prime_UTR |
| GTACTATTACAGAGATAGAT+AGG | 0.339194 | 8_1:+90988974 | None:intergenic |
| CACTGATTGGGGTGCGACGT+GGG | 0.366614 | 8_1:+90991293 | None:intergenic |
| GTTTCAGCATCATGTCTTTG+TGG | 0.367335 | 8_1:+90989649 | None:intergenic |
| TTAAATCTCTGCTAGTTTAG+TGG | 0.376282 | 8_1:-90989037 | Msa1225530:three_prime_UTR |
| ACGAACGCTCTTCACTGATT+GGG | 0.397865 | 8_1:+90991281 | None:intergenic |
| CATCATGTCTTTGTGGCACT+TGG | 0.399820 | 8_1:+90989656 | None:intergenic |
| TTCCGGCTCAGAGGAGAGTT+TGG | 0.400683 | 8_1:-90989475 | Msa1225530:three_prime_UTR |
| CCAGCAGTGCGGTAATCAAA+TGG | 0.411400 | 8_1:+90989324 | None:intergenic |
| GCAGAACCGTTAGTTGCTTC+CGG | 0.413723 | 8_1:-90989492 | Msa1225530:three_prime_UTR |
| AACGAACGCTCTTCACTGAT+TGG | 0.419839 | 8_1:+90991280 | None:intergenic |
| AATAAGCGGGTTGGTTTGAC+AGG | 0.421004 | 8_1:-90989411 | Msa1225530:three_prime_UTR |
| CAAAGACATGATGCTGAAAC+AGG | 0.424095 | 8_1:-90989646 | Msa1225530:three_prime_UTR |
| CATGTATTAAAATTTAATAG+TGG | 0.424336 | 8_1:-90988802 | Msa1225530:three_prime_UTR |
| GGGAATGGTTATTGGGGTTG+AGG | 0.428999 | 8_1:+90991314 | None:intergenic |
| CACTTGCAGCATCTTCCATT+GGG | 0.430249 | 8_1:-90989614 | Msa1225530:three_prime_UTR |
| AGCTTGACAAGATCTAGATT+TGG | 0.434195 | 8_1:-90989257 | Msa1225530:three_prime_UTR |
| ATGTATTAAAATTTAATAGT+GGG | 0.442884 | 8_1:-90988801 | Msa1225530:three_prime_UTR |
| TTGCAGTTGCTGCACCGCTT+AGG | 0.445309 | 8_1:+90989432 | None:intergenic |
| TCCATTGGGAACATCATGAA+TGG | 0.454077 | 8_1:-90989600 | Msa1225530:three_prime_UTR |
| TTGGTGGTGTCTGCATTATA+AGG | 0.456260 | 8_1:-90989011 | Msa1225530:three_prime_UTR |
| GGGATCGAAGAGGGAGAAAG+AGG | 0.460650 | 8_1:+90991155 | None:intergenic |
| CCATTTGATTACCGCACTGC+TGG | 0.477078 | 8_1:-90989324 | Msa1225530:three_prime_UTR |
| ATGCACAACATAGGACCCTC+TGG | 0.486214 | 8_1:+90989726 | None:intergenic |
| ACACTTGCAGCATCTTCCAT+TGG | 0.488087 | 8_1:-90989615 | Msa1225530:three_prime_UTR |
| TCTGCTAGTTTAGTGGAAGT+TGG | 0.488824 | 8_1:-90989030 | Msa1225530:three_prime_UTR |
| GGCTATCATTGAATTTCTCT+AGG | 0.502773 | 8_1:-90988863 | Msa1225530:three_prime_UTR |
| CTTCACATCCAGTCTGATCA+TGG | 0.503432 | 8_1:+90989754 | None:intergenic |
| CAGCAGTGCGGTAATCAAAT+GGG | 0.506125 | 8_1:+90989325 | None:intergenic |
| CACCGCTTAGGACCATCCTT+CGG | 0.507315 | 8_1:+90989444 | None:intergenic |
| AAGAATGCGTTGAATGTGCT+TGG | 0.508004 | 8_1:-90988838 | Msa1225530:three_prime_UTR |
| AAAACACCATTAAAATATGC+AGG | 0.511433 | 8_1:+90989169 | None:intergenic |
| TTTAAAAGACTTCAAAACAC+TGG | 0.514164 | 8_1:+90989055 | None:intergenic |
| TCCACGCTGGCAGTGATAGC+AGG | 0.514469 | 8_1:+90989552 | None:intergenic |
| CTCCAAACTCTCCTCTGAGC+CGG | 0.515481 | 8_1:+90989473 | None:intergenic |
| AACTAACGGTTCTGCAGAGA+TGG | 0.516940 | 8_1:+90989500 | None:intergenic |
| CTTCGATCCCAAATCTTCAA+AGG | 0.519999 | 8_1:-90991142 | Msa1225530:intron |
| TTGGGGTGCGACGTGGGGAA+TGG | 0.520040 | 8_1:+90991299 | None:intergenic |
| TAGATTGTACTATATTATTG+TGG | 0.520791 | 8_1:-90988894 | Msa1225530:three_prime_UTR |
| AGGTTCAATTACACTGCTGC+TGG | 0.521288 | 8_1:+90989572 | None:intergenic |
| TCACTGATTGGGGTGCGACG+TGG | 0.523731 | 8_1:+90991292 | None:intergenic |
| GTGCAGCAACTGCAATAAGC+GGG | 0.530850 | 8_1:-90989424 | Msa1225530:three_prime_UTR |
| TGAAGATTTGGGATCGAAGA+GGG | 0.532574 | 8_1:+90991146 | None:intergenic |
| GCTAGTTTAGTGGAAGTTGG+TGG | 0.537857 | 8_1:-90989027 | Msa1225530:three_prime_UTR |
| TTGAAGATTTGGGATCGAAG+AGG | 0.538680 | 8_1:+90991145 | None:intergenic |
| CCATTGGGAACATCATGAAT+GGG | 0.543973 | 8_1:-90989599 | Msa1225530:three_prime_UTR |
| TTAAAAGACTTCAAAACACT+GGG | 0.551489 | 8_1:+90989056 | None:intergenic |
| TGTATTAAAATTTAATAGTG+GGG | 0.557692 | 8_1:-90988800 | Msa1225530:three_prime_UTR |
| AAAAGCAAACCCTGTTGTGA+AGG | 0.563268 | 8_1:-90989286 | Msa1225530:three_prime_UTR |
| CGAACGCTCTTCACTGATTG+GGG | 0.566023 | 8_1:+90991282 | None:intergenic |
| GCACTTGGAACACATGTTCA+TGG | 0.566316 | 8_1:+90989671 | None:intergenic |
| ACTGATTGGGGTGCGACGTG+GGG | 0.570296 | 8_1:+90991294 | None:intergenic |
| TTGGAGAAGAAGCCGAAGGA+TGG | 0.571839 | 8_1:-90989456 | Msa1225530:three_prime_UTR |
| AGAATGCGTTGAATGTGCTT+GGG | 0.577133 | 8_1:-90988837 | Msa1225530:three_prime_UTR |
| CCCATTCATGATGTTCCCAA+TGG | 0.580215 | 8_1:+90989599 | None:intergenic |
| TGCACAACATAGGACCCTCT+GGG | 0.580560 | 8_1:+90989727 | None:intergenic |
| AGCGATGTACAGCACAGTAA+AGG | 0.582881 | 8_1:+90989367 | None:intergenic |
| AGCAACTGCAATAAGCGGGT+TGG | 0.585228 | 8_1:-90989420 | Msa1225530:three_prime_UTR |
| ACAGGATTTAATTGTCGATG+TGG | 0.589267 | 8_1:-90989393 | Msa1225530:three_prime_UTR |
| ATTAAAATATGCAGGAAACT+CGG | 0.591156 | 8_1:+90989177 | None:intergenic |
| CATGATGCTGAAACAGGAGC+AGG | 0.593551 | 8_1:-90989640 | Msa1225530:three_prime_UTR |
| AATCAGTGAAGAGCGTTCGT+TGG | 0.599174 | 8_1:-90991278 | Msa1225530:CDS |
| CAGTTGTTGATGCACAACAT+AGG | 0.601548 | 8_1:+90989717 | None:intergenic |
| GGAGATCTCAGTCGATCAAG+TGG | 0.604936 | 8_1:-90989532 | Msa1225530:three_prime_UTR |
| AAGATGGACCATGATCAGAC+TGG | 0.612119 | 8_1:-90989762 | Msa1225530:three_prime_UTR |
| GGATGTGAAGCTGCCCCAGA+GGG | 0.615247 | 8_1:-90989741 | Msa1225530:three_prime_UTR |
| TACTATTACAGAGATAGATA+GGG | 0.625786 | 8_1:+90988975 | None:intergenic |
| TCTGAGCCGGAAGCAACTAA+CGG | 0.631746 | 8_1:+90989486 | None:intergenic |
| GAGTTTGGAGAAGAAGCCGA+AGG | 0.631849 | 8_1:-90989460 | Msa1225530:three_prime_UTR |
| GGTGCAGCAACTGCAATAAG+CGG | 0.632084 | 8_1:-90989425 | Msa1225530:three_prime_UTR |
| AATGGAAGATGCTGCAAGTG+TGG | 0.642024 | 8_1:+90989617 | None:intergenic |
| GTTAGTTGCTTCCGGCTCAG+AGG | 0.650978 | 8_1:-90989484 | Msa1225530:three_prime_UTR |
| ATCGACTGAGATCTCCACGC+TGG | 0.665451 | 8_1:+90989539 | None:intergenic |
| TGGATGTGAAGCTGCCCCAG+AGG | 0.681846 | 8_1:-90989742 | Msa1225530:three_prime_UTR |
| ACCTGCTATCACTGCCAGCG+TGG | 0.686751 | 8_1:-90989553 | Msa1225530:three_prime_UTR |
| AGCCGAAGGATGGTCCTAAG+CGG | 0.700565 | 8_1:-90989446 | Msa1225530:three_prime_UTR |
| GACGTGGGGAATGGTTATTG+GGG | 0.715283 | 8_1:+90991308 | None:intergenic |
| ATGTTGTGCATCAACAACTG+TGG | 0.726175 | 8_1:-90989714 | Msa1225530:three_prime_UTR |
| GCACAACATAGGACCCTCTG+GGG | 0.736272 | 8_1:+90989728 | None:intergenic |
| TTGCATCACGTCCAGCAGTG+CGG | 0.742537 | 8_1:+90989313 | None:intergenic |
| TAAAAGACTTCAAAACACTG+GGG | 0.756956 | 8_1:+90989057 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAATTTATTTATAT+TGG | - | chr8_1:90989388-90989407 | Msa1225530:three_prime_UTR | 0.0% |
| !! | AATTAATTACAAAATCAATA+AGG | + | chr8_1:90989375-90989394 | None:intergenic | 10.0% |
| !!! | TATTATATTTTTATATGTGA+TGG | - | chr8_1:90990979-90990998 | Msa1225530:intron | 10.0% |
| !!! | ATTATATTTTTATATGTGAT+GGG | - | chr8_1:90990980-90990999 | Msa1225530:intron | 10.0% |
| !! | ATGTATTAAAATTTAATAGT+GGG | - | chr8_1:90991324-90991343 | Msa1225530:CDS | 10.0% |
| !! | AAACACACAAAAAAAAAAAA+AGG | - | chr8_1:90988900-90988919 | Msa1225530:three_prime_UTR | 15.0% |
| !!! | TCTATGTTTTCATTTTTATT+TGG | - | chr8_1:90989031-90989050 | Msa1225530:three_prime_UTR | 15.0% |
| !!! | TTGTACAGTTTTTATTTTTA+AGG | - | chr8_1:90989241-90989260 | Msa1225530:three_prime_UTR | 15.0% |
| !! | ATTGAAAATTGAATGTTATT+TGG | - | chr8_1:90989462-90989481 | Msa1225530:three_prime_UTR | 15.0% |
| !!! | GTTTTGTTTTGTTTTTAATA+AGG | - | chr8_1:90989630-90989649 | Msa1225530:three_prime_UTR | 15.0% |
| !! | ATAAATTTATGAAAAGTTCA+CGG | - | chr8_1:90989937-90989956 | Msa1225530:intron | 15.0% |
| !! | ATTATGCTATATAAATTAAG+TGG | - | chr8_1:90990222-90990241 | Msa1225530:intron | 15.0% |
| !!! | TTATATTTTTATATGTGATG+GGG | - | chr8_1:90990981-90991000 | Msa1225530:intron | 15.0% |
| !!! | TATATTATTGTGGTTTTTTA+TGG | - | chr8_1:90991241-90991260 | Msa1225530:CDS | 15.0% |
| !! | CATGTATTAAAATTTAATAG+TGG | - | chr8_1:90991323-90991342 | Msa1225530:CDS | 15.0% |
| !! | TGTATTAAAATTTAATAGTG+GGG | - | chr8_1:90991325-90991344 | Msa1225530:CDS | 15.0% |
| !! | TGAAAACATAGAAGATAATT+AGG | + | chr8_1:90989023-90989042 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATTTGTGAATAC+AGG | - | chr8_1:90989123-90989142 | Msa1225530:three_prime_UTR | 20.0% |
| !!! | TTTTATATGATGATATGAGA+AGG | - | chr8_1:90989681-90989700 | Msa1225530:three_prime_UTR | 20.0% |
| !!! | TATTCATCAAATAAAGCATT+GGG | + | chr8_1:90989850-90989869 | None:intergenic | 20.0% |
| !! | ATATTCATCAAATAAAGCAT+TGG | + | chr8_1:90989851-90989870 | None:intergenic | 20.0% |
| !!! | TGTATAAGGTTGATATATTT+TGG | - | chr8_1:90989896-90989915 | Msa1225530:intron | 20.0% |
| !! | CAATTTATGTTTATATGGTT+TGG | - | chr8_1:90990306-90990325 | Msa1225530:intron | 20.0% |
| !! | GTTTGGTATTTAAATTTCTT+TGG | - | chr8_1:90990323-90990342 | Msa1225530:intron | 20.0% |
| !!! | TATATTTTTATATGTGATGG+GGG | - | chr8_1:90990982-90991001 | Msa1225530:intron | 20.0% |
| !! | TAGATTGTACTATATTATTG+TGG | - | chr8_1:90991231-90991250 | Msa1225530:CDS | 20.0% |
| ! | CATAGAAGATAATTAGGAAA+TGG | + | chr8_1:90989017-90989036 | None:intergenic | 25.0% |
| !!! | TTTTAAGAATTTTAGTTCCG+AGG | - | chr8_1:90989292-90989311 | Msa1225530:three_prime_UTR | 25.0% |
| !!! | GTTTTTGAAAATTTGAGTTG+TGG | - | chr8_1:90989410-90989429 | Msa1225530:three_prime_UTR | 25.0% |
| ! | ACAAGATGACAAAATTAGTT+AGG | + | chr8_1:90989982-90990001 | None:intergenic | 25.0% |
| !! | TTTGTCATCTTGTTTATTTG+AGG | - | chr8_1:90989989-90990008 | Msa1225530:intron | 25.0% |
| !! | AAATAACTCATAAAAGCACA+CGG | + | chr8_1:90990060-90990079 | None:intergenic | 25.0% |
| !! | GTCTATTGATTATCTCTTTA+AGG | + | chr8_1:90990109-90990128 | None:intergenic | 25.0% |
| !! | TATTTAAATTTCTTTGGTGC+AGG | - | chr8_1:90990329-90990348 | Msa1225530:intron | 25.0% |
| ! | ATTAAAATATGCAGGAAACT+CGG | + | chr8_1:90990951-90990970 | None:intergenic | 25.0% |
| ! | AAAACACCATTAAAATATGC+AGG | + | chr8_1:90990959-90990978 | None:intergenic | 25.0% |
| ! | TTAAAAGACTTCAAAACACT+GGG | + | chr8_1:90991072-90991091 | None:intergenic | 25.0% |
| ! | TTTAAAAGACTTCAAAACAC+TGG | + | chr8_1:90991073-90991092 | None:intergenic | 25.0% |
| ! | TACTATTACAGAGATAGATA+GGG | + | chr8_1:90991153-90991172 | None:intergenic | 25.0% |
| ! | TGTAATAGTACATGTCAAAA+TGG | - | chr8_1:90991163-90991182 | Msa1225530:CDS | 25.0% |
| TTATACATGCAGATTTACGT+AGG | - | chr8_1:90989341-90989360 | Msa1225530:three_prime_UTR | 30.0% | |
| TATACATGCAGATTTACGTA+GGG | - | chr8_1:90989342-90989361 | Msa1225530:three_prime_UTR | 30.0% | |
| CTTATACAATTAGTGTGTGT+TGG | + | chr8_1:90989884-90989903 | None:intergenic | 30.0% | |
| CAACACACACTAATTGTATA+AGG | - | chr8_1:90989882-90989901 | Msa1225530:intron | 30.0% | |
| ! | ATCTCTTTAAGGATGTCTAT+AGG | + | chr8_1:90990098-90990117 | None:intergenic | 30.0% |
| AATACATGAGCTCTTAAACA+AGG | + | chr8_1:90990148-90990167 | None:intergenic | 30.0% | |
| AAATGAGCCAAATGAAACTT+GGG | + | chr8_1:90990174-90990193 | None:intergenic | 30.0% | |
| TAAATGAGCCAAATGAAACT+TGG | + | chr8_1:90990175-90990194 | None:intergenic | 30.0% | |
| AAGTGGTTAATATGCATAGT+TGG | - | chr8_1:90990239-90990258 | Msa1225530:intron | 30.0% | |
| AACGCCATTTATTATTAGCT+AGG | - | chr8_1:90990279-90990298 | Msa1225530:intron | 30.0% | |
| GCGAGCAATTTATGTTTATA+TGG | - | chr8_1:90990301-90990320 | Msa1225530:intron | 30.0% | |
| ! | ATCAACAACTGTGGATTTTT+CGG | - | chr8_1:90990420-90990439 | Msa1225530:intron | 30.0% |
| !! | GAGTTTCCTGCATATTTTAA+TGG | - | chr8_1:90990950-90990969 | Msa1225530:intron | 30.0% |
| TAAAAGACTTCAAAACACTG+GGG | + | chr8_1:90991071-90991090 | None:intergenic | 30.0% | |
| ! | TTAAATCTCTGCTAGTTTAG+TGG | - | chr8_1:90991088-90991107 | Msa1225530:intron | 30.0% |
| GTACTATTACAGAGATAGAT+AGG | + | chr8_1:90991154-90991173 | None:intergenic | 30.0% | |
| ATCCCAAATCTTCAAAGGTT+AGG | - | chr8_1:90988988-90989007 | Msa1225530:three_prime_UTR | 35.0% | |
| TCCCAAATCTTCAAAGGTTA+GGG | - | chr8_1:90988989-90989008 | Msa1225530:three_prime_UTR | 35.0% | |
| ! | ACCCTAACCTTTGAAGATTT+GGG | + | chr8_1:90988993-90989012 | None:intergenic | 35.0% |
| ! | AACCCTAACCTTTGAAGATT+TGG | + | chr8_1:90988994-90989013 | None:intergenic | 35.0% |
| ACGATTCTGATCTTGTAGAT+CGG | - | chr8_1:90989159-90989178 | Msa1225530:three_prime_UTR | 35.0% | |
| ATACATGCAGATTTACGTAG+GGG | - | chr8_1:90989343-90989362 | Msa1225530:three_prime_UTR | 35.0% | |
| TCTGTTTCATGTTAGTCAAC+TGG | - | chr8_1:90989534-90989553 | Msa1225530:three_prime_UTR | 35.0% | |
| TGAGAAGGTTTGTGATCTAA+TGG | - | chr8_1:90989696-90989715 | Msa1225530:three_prime_UTR | 35.0% | |
| !! | ACTTGTTATCGTCGTCTATT+TGG | + | chr8_1:90989727-90989746 | None:intergenic | 35.0% |
| ! | GTCATCTTGTTTATTTGAGG+TGG | - | chr8_1:90989992-90990011 | Msa1225530:intron | 35.0% |
| ! | TTTATTTGAGGTGGAGTAGT+AGG | - | chr8_1:90990001-90990020 | Msa1225530:intron | 35.0% |
| CTTAAACAAGGAAAGAACAG+AGG | + | chr8_1:90990136-90990155 | None:intergenic | 35.0% | |
| TATTGACCCCAAGTTTCATT+TGG | - | chr8_1:90990164-90990183 | Msa1225530:intron | 35.0% | |
| AATGAGCCAAATGAAACTTG+GGG | + | chr8_1:90990173-90990192 | None:intergenic | 35.0% | |
| ! | GCATAATCAGCACTATTTTC+AGG | + | chr8_1:90990209-90990228 | None:intergenic | 35.0% |
| CTCGCCTAGCTAATAATAAA+TGG | + | chr8_1:90990286-90990305 | None:intergenic | 35.0% | |
| GCAGGAAAGTTGAAAAAAGA+TGG | - | chr8_1:90990347-90990366 | Msa1225530:intron | 35.0% | |
| ACAGGATTTAATTGTCGATG+TGG | - | chr8_1:90990732-90990751 | Msa1225530:intron | 35.0% | |
| AGCTTGACAAGATCTAGATT+TGG | - | chr8_1:90990868-90990887 | Msa1225530:intron | 35.0% | |
| GAGACTGCATTTCATTTGAT+TGG | - | chr8_1:90991033-90991052 | Msa1225530:intron | 35.0% | |
| ! | AAACACTGGGGCATATATTT+TGG | + | chr8_1:90991059-90991078 | None:intergenic | 35.0% |
| GTACAATCTACTCATGTCTA+TGG | + | chr8_1:90991221-90991240 | None:intergenic | 35.0% | |
| GGCTATCATTGAATTTCTCT+AGG | - | chr8_1:90991262-90991281 | Msa1225530:CDS | 35.0% | |
| ! | TGAAGATTTGGGATCGAAGA+GGG | + | chr8_1:90988982-90989001 | None:intergenic | 40.0% |
| ! | TTGAAGATTTGGGATCGAAG+AGG | + | chr8_1:90988983-90989002 | None:intergenic | 40.0% |
| CTTCGATCCCAAATCTTCAA+AGG | - | chr8_1:90988983-90989002 | Msa1225530:three_prime_UTR | 40.0% | |
| !!! | GGCTTGAAGCTTTCGTTTTT+TGG | - | chr8_1:90989180-90989199 | Msa1225530:three_prime_UTR | 40.0% |
| !!! | GCTTTCGTTTTTTGGCTTCA+AGG | - | chr8_1:90989188-90989207 | Msa1225530:three_prime_UTR | 40.0% |
| !!! | TCGTTTTTTGGCTTCAAGGT+TGG | - | chr8_1:90989192-90989211 | Msa1225530:three_prime_UTR | 40.0% |
| !!! | GAATTTTAGTTCCGAGGTAG+AGG | - | chr8_1:90989298-90989317 | Msa1225530:three_prime_UTR | 40.0% |
| ! | CCAAATTTTCACCTCTACCT+CGG | + | chr8_1:90989312-90989331 | None:intergenic | 40.0% |
| CGAGGTAGAGGTGAAAATTT+GGG | - | chr8_1:90989310-90989329 | Msa1225530:three_prime_UTR | 40.0% | |
| CATGTTAGTCAACTGGTAGA+TGG | - | chr8_1:90989541-90989560 | Msa1225530:three_prime_UTR | 40.0% | |
| AGACGACGATAACAAGTATG+AGG | - | chr8_1:90989730-90989749 | Msa1225530:three_prime_UTR | 40.0% | |
| CAGTTGTTGATGCACAACAT+AGG | + | chr8_1:90990411-90990430 | None:intergenic | 40.0% | |
| ATGTTGTGCATCAACAACTG+TGG | - | chr8_1:90990411-90990430 | Msa1225530:intron | 40.0% | |
| GTTTCAGCATCATGTCTTTG+TGG | + | chr8_1:90990479-90990498 | None:intergenic | 40.0% | |
| CAAAGACATGATGCTGAAAC+AGG | - | chr8_1:90990479-90990498 | Msa1225530:intron | 40.0% | |
| TCCATTGGGAACATCATGAA+TGG | - | chr8_1:90990525-90990544 | Msa1225530:intron | 40.0% | |
| CCATTGGGAACATCATGAAT+GGG | - | chr8_1:90990526-90990545 | Msa1225530:intron | 40.0% | |
| AAAAGCAAACCCTGTTGTGA+AGG | - | chr8_1:90990839-90990858 | Msa1225530:intron | 40.0% | |
| ! | TTTATATGTGATGGGGGACT+TGG | - | chr8_1:90990988-90991007 | Msa1225530:intron | 40.0% |
| ! | TTATATGTGATGGGGGACTT+GGG | - | chr8_1:90990989-90991008 | Msa1225530:intron | 40.0% |
| ! | TCTGCTAGTTTAGTGGAAGT+TGG | - | chr8_1:90991095-90991114 | Msa1225530:intron | 40.0% |
| !! | TTGGTGGTGTCTGCATTATA+AGG | - | chr8_1:90991114-90991133 | Msa1225530:intron | 40.0% |
| AAGAATGCGTTGAATGTGCT+TGG | - | chr8_1:90991287-90991306 | Msa1225530:CDS | 40.0% | |
| AGAATGCGTTGAATGTGCTT+GGG | - | chr8_1:90991288-90991307 | Msa1225530:CDS | 40.0% | |
| ! | ACGAACGCTCTTCACTGATT+GGG | + | chr8_1:90988847-90988866 | None:intergenic | 45.0% |
| AACGAACGCTCTTCACTGAT+TGG | + | chr8_1:90988848-90988867 | None:intergenic | 45.0% | |
| !! | AATCAGTGAAGAGCGTTCGT+TGG | - | chr8_1:90988847-90988866 | Msa1225530:three_prime_UTR | 45.0% |
| CCGAGGTAGAGGTGAAAATT+TGG | - | chr8_1:90989309-90989328 | Msa1225530:three_prime_UTR | 45.0% | |
| AAGATGGACCATGATCAGAC+TGG | - | chr8_1:90990363-90990382 | Msa1225530:intron | 45.0% | |
| CTTCACATCCAGTCTGATCA+TGG | + | chr8_1:90990374-90990393 | None:intergenic | 45.0% | |
| GCACTTGGAACACATGTTCA+TGG | + | chr8_1:90990457-90990476 | None:intergenic | 45.0% | |
| CATCATGTCTTTGTGGCACT+TGG | + | chr8_1:90990472-90990491 | None:intergenic | 45.0% | |
| AATGGAAGATGCTGCAAGTG+TGG | + | chr8_1:90990511-90990530 | None:intergenic | 45.0% | |
| ACACTTGCAGCATCTTCCAT+TGG | - | chr8_1:90990510-90990529 | Msa1225530:intron | 45.0% | |
| CACTTGCAGCATCTTCCATT+GGG | - | chr8_1:90990511-90990530 | Msa1225530:intron | 45.0% | |
| CCCATTCATGATGTTCCCAA+TGG | + | chr8_1:90990529-90990548 | None:intergenic | 45.0% | |
| AGGTTCAATTACACTGCTGC+TGG | + | chr8_1:90990556-90990575 | None:intergenic | 45.0% | |
| ! | GGTTCTGCAGAGATGGTTTT+GGG | + | chr8_1:90990621-90990640 | None:intergenic | 45.0% |
| AACTAACGGTTCTGCAGAGA+TGG | + | chr8_1:90990628-90990647 | None:intergenic | 45.0% | |
| !! | AATAAGCGGGTTGGTTTGAC+AGG | - | chr8_1:90990714-90990733 | Msa1225530:intron | 45.0% |
| AGCGATGTACAGCACAGTAA+AGG | + | chr8_1:90990761-90990780 | None:intergenic | 45.0% | |
| CAGCAGTGCGGTAATCAAAT+GGG | + | chr8_1:90990803-90990822 | None:intergenic | 45.0% | |
| ! | GCTTTTCAGCCTTCACAACA+GGG | + | chr8_1:90990851-90990870 | None:intergenic | 45.0% |
| ! | AGCTTTTCAGCCTTCACAAC+AGG | + | chr8_1:90990852-90990871 | None:intergenic | 45.0% |
| ! | GCTAGTTTAGTGGAAGTTGG+TGG | - | chr8_1:90991098-90991117 | Msa1225530:intron | 45.0% |
| GGGAATGGTTATTGGGGTTG+AGG | + | chr8_1:90988814-90988833 | None:intergenic | 50.0% | |
| GACGTGGGGAATGGTTATTG+GGG | + | chr8_1:90988820-90988839 | None:intergenic | 50.0% | |
| CGACGTGGGGAATGGTTATT+GGG | + | chr8_1:90988821-90988840 | None:intergenic | 50.0% | |
| ! | CGAACGCTCTTCACTGATTG+GGG | + | chr8_1:90988846-90988865 | None:intergenic | 50.0% |
| GGTTGGATATATTCGCGTCG+TGG | - | chr8_1:90989209-90989228 | Msa1225530:three_prime_UTR | 50.0% | |
| TGCACAACATAGGACCCTCT+GGG | + | chr8_1:90990401-90990420 | None:intergenic | 50.0% | |
| ATGCACAACATAGGACCCTC+TGG | + | chr8_1:90990402-90990421 | None:intergenic | 50.0% | |
| CATGATGCTGAAACAGGAGC+AGG | - | chr8_1:90990485-90990504 | Msa1225530:intron | 50.0% | |
| GGAGATCTCAGTCGATCAAG+TGG | - | chr8_1:90990593-90990612 | Msa1225530:intron | 50.0% | |
| ! | CGGTTCTGCAGAGATGGTTT+TGG | + | chr8_1:90990622-90990641 | None:intergenic | 50.0% |
| GCAGAACCGTTAGTTGCTTC+CGG | - | chr8_1:90990633-90990652 | Msa1225530:intron | 50.0% | |
| TCTGAGCCGGAAGCAACTAA+CGG | + | chr8_1:90990642-90990661 | None:intergenic | 50.0% | |
| GAGTTTGGAGAAGAAGCCGA+AGG | - | chr8_1:90990665-90990684 | Msa1225530:intron | 50.0% | |
| TTGGAGAAGAAGCCGAAGGA+TGG | - | chr8_1:90990669-90990688 | Msa1225530:intron | 50.0% | |
| GGTGCAGCAACTGCAATAAG+CGG | - | chr8_1:90990700-90990719 | Msa1225530:intron | 50.0% | |
| GTGCAGCAACTGCAATAAGC+GGG | - | chr8_1:90990701-90990720 | Msa1225530:intron | 50.0% | |
| AGCAACTGCAATAAGCGGGT+TGG | - | chr8_1:90990705-90990724 | Msa1225530:intron | 50.0% | |
| CCAGCAGTGCGGTAATCAAA+TGG | + | chr8_1:90990804-90990823 | None:intergenic | 50.0% | |
| CCATTTGATTACCGCACTGC+TGG | - | chr8_1:90990801-90990820 | Msa1225530:intron | 50.0% | |
| GCGACGTGGGGAATGGTTAT+TGG | + | chr8_1:90988822-90988841 | None:intergenic | 55.0% | |
| GGGATCGAAGAGGGAGAAAG+AGG | + | chr8_1:90988973-90988992 | None:intergenic | 55.0% | |
| GCACAACATAGGACCCTCTG+GGG | + | chr8_1:90990400-90990419 | None:intergenic | 55.0% | |
| ATCGACTGAGATCTCCACGC+TGG | + | chr8_1:90990589-90990608 | None:intergenic | 55.0% | |
| GTTAGTTGCTTCCGGCTCAG+AGG | - | chr8_1:90990641-90990660 | Msa1225530:intron | 55.0% | |
| TTCCGGCTCAGAGGAGAGTT+TGG | - | chr8_1:90990650-90990669 | Msa1225530:intron | 55.0% | |
| CTCCAAACTCTCCTCTGAGC+CGG | + | chr8_1:90990655-90990674 | None:intergenic | 55.0% | |
| AGCCGAAGGATGGTCCTAAG+CGG | - | chr8_1:90990679-90990698 | Msa1225530:intron | 55.0% | |
| CACCGCTTAGGACCATCCTT+CGG | + | chr8_1:90990684-90990703 | None:intergenic | 55.0% | |
| TTGCAGTTGCTGCACCGCTT+AGG | + | chr8_1:90990696-90990715 | None:intergenic | 55.0% | |
| TTGCATCACGTCCAGCAGTG+CGG | + | chr8_1:90990815-90990834 | None:intergenic | 55.0% | |
| ACTGATTGGGGTGCGACGTG+GGG | + | chr8_1:90988834-90988853 | None:intergenic | 60.0% | |
| ! | CACTGATTGGGGTGCGACGT+GGG | + | chr8_1:90988835-90988854 | None:intergenic | 60.0% |
| ! | TCACTGATTGGGGTGCGACG+TGG | + | chr8_1:90988836-90988855 | None:intergenic | 60.0% |
| TGGATGTGAAGCTGCCCCAG+AGG | - | chr8_1:90990383-90990402 | Msa1225530:intron | 60.0% | |
| GGATGTGAAGCTGCCCCAGA+GGG | - | chr8_1:90990384-90990403 | Msa1225530:intron | 60.0% | |
| ACCTGCTATCACTGCCAGCG+TGG | - | chr8_1:90990572-90990591 | Msa1225530:intron | 60.0% | |
| TCCACGCTGGCAGTGATAGC+AGG | + | chr8_1:90990576-90990595 | None:intergenic | 60.0% | |
| TTGGGGTGCGACGTGGGGAA+TGG | + | chr8_1:90988829-90988848 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 90988798 | 90991349 | 90988798 | ID=Msa1225530;Name=Msa1225530 |
| chr8_1 | mRNA | 90988798 | 90991349 | 90988798 | ID=Msa1225530-mRNA-1;Parent=Msa1225530;Name=Msa1225530-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0.5|1|0|1|2|990|71 |
| chr8_1 | exon | 90988798 | 90989796 | 90988798 | ID=Msa1225530-mRNA-1:exon:33214;Parent=Msa1225530-mRNA-1 |
| chr8_1 | exon | 90991143 | 90991349 | 90991143 | ID=Msa1225530-mRNA-1:exon:33213;Parent=Msa1225530-mRNA-1 |
| chr8_1 | CDS | 90991143 | 90991349 | 90991143 | ID=Msa1225530-mRNA-1:cds;Parent=Msa1225530-mRNA-1 |
| chr8_1 | CDS | 90989788 | 90989796 | 90989788 | ID=Msa1225530-mRNA-1:cds;Parent=Msa1225530-mRNA-1 |
| chr8_1 | three_prime_UTR | 90988798 | 90989787 | 90988798 | ID=Msa1225530-mRNA-1:three_prime_utr;Parent=Msa1225530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
