AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1227030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1227030 MtrunA17_Chr4g0064341 96.409 724 26 0 1 724 1 724 0.0 1437
Msa1227030 MtrunA17_Chr4g0064351 100.000 65 0 0 793 857 1 65 3.65e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1227030 AT5G35430.1 46.970 858 381 13 1 856 1 786 0.0 698

Find 225 sgRNAs with CRISPR-Local

Find 465 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTCAAATTATCTTTCT+AGG 0.226319 8_2:-2116738 Msa1227030:CDS
GATCCATCCAGTTCCGATTT+AGG 0.229483 8_2:-2116877 Msa1227030:CDS
TCACAGTCGTCTTGGCTAAA+TGG 0.235042 8_2:+2115446 None:intergenic
AACATATATAAGTTCAATTC+AGG 0.235092 8_2:-2114983 Msa1227030:three_prime_UTR
CAAATTTAGGGGTCAGTTAC+AGG 0.246780 8_2:-2114922 Msa1227030:three_prime_UTR
TCCAGAATTTACATCTTTCT+AGG 0.251642 8_2:-2115569 Msa1227030:CDS
ATCGAAGGTTGAAAGGGTTT+TGG 0.256233 8_2:+2121167 None:intergenic
GTTGAATTTGAAGACGTAAA+TGG 0.270621 8_2:-2115401 Msa1227030:CDS
ATCCATCCAGTTCCGATTTA+GGG 0.273841 8_2:-2116876 Msa1227030:CDS
TGCAAAGACGGTATCGGTTT+TGG 0.280040 8_2:-2118438 Msa1227030:CDS
CTCTGGACTGTTGGGCAATA+TGG 0.288023 8_2:+2115217 None:intergenic
AAATTATCTTTCTAGGGCTT+TGG 0.297084 8_2:-2116731 Msa1227030:CDS
CGCCACAATTATAAATTATA+AGG 0.301160 8_2:+2116311 None:intergenic
CGTTGGAAATAAAGTTGCTT+TGG 0.307451 8_2:-2118711 Msa1227030:CDS
TGCGAAGAATTCTTCTCTTC+AGG 0.309254 8_2:-2115366 Msa1227030:CDS
TGCTAAGGCATTGCTTCCTT+TGG 0.311529 8_2:+2118685 None:intergenic
GTTGGAAATAAAGTTGCTTT+GGG 0.320959 8_2:-2118710 Msa1227030:CDS
GAGTTTATTCAGAGAAAATA+TGG 0.324465 8_2:-2118779 Msa1227030:intron
TACTTATCATATTATTTGTC+TGG 0.338404 8_2:-2115488 Msa1227030:CDS
ATAATGCAAAGAAGCGTCTT+TGG 0.339590 8_2:+2121010 None:intergenic
ATGTAAATTCTGGAACATTC+TGG 0.345616 8_2:+2115578 None:intergenic
GAGGTTGGAGTTTGCGTTGT+TGG 0.355655 8_2:-2116121 Msa1227030:CDS
GCCTAGAAAGATGTAAATTC+TGG 0.359052 8_2:+2115568 None:intergenic
TGCTGTAATGTCTGCAATGC+AGG 0.360550 8_2:-2115282 Msa1227030:CDS
AGCATATGTGGAGCTGGAAT+TGG 0.364524 8_2:-2115648 Msa1227030:CDS
ATTGATGCCCTTGCCTCCTC+TGG 0.366433 8_2:+2115317 None:intergenic
ATTAAGATTAAAACATGGTT+TGG 0.368682 8_2:+2121272 None:intergenic
AACCTCTCTAGGCTATTATC+TGG 0.370844 8_2:-2118478 Msa1227030:intron
GCTTCTTTGCATTATCAATC+TGG 0.377573 8_2:-2121002 Msa1227030:CDS
GTTGTGGAAGATCAAATTCC+AGG 0.383285 8_2:-2116076 Msa1227030:CDS
TTACGACTTAAATTCTTTGA+AGG 0.383757 8_2:+2115860 None:intergenic
CAACACCAAATGCTCTTTCC+AGG 0.384211 8_2:+2116998 None:intergenic
TGCCTGTGTAACCAATATAT+TGG 0.385512 8_2:+2115244 None:intergenic
GATTAAAACATGGTTTGGTT+TGG 0.387190 8_2:+2121277 None:intergenic
CCATAGCGAGATCGAGGAAT+TGG 0.392164 8_2:+2121135 None:intergenic
CATAATACGAGAGGGAGTTC+TGG 0.398213 8_2:+2115726 None:intergenic
AAAGGGGATGATTGCGGTCC+AGG 0.399591 8_2:-2116031 Msa1227030:CDS
ACAGAAGGGAGGAGCTAGTC+AGG 0.399864 8_2:-2115756 Msa1227030:CDS
TTGAATACCTTTGGATCGTT+AGG 0.400570 8_2:+2120930 None:intergenic
TCCTTCAAATTATCTTTCTA+GGG 0.402240 8_2:-2116737 Msa1227030:CDS
GAACTCGACATGATTTGATT+AGG 0.405082 8_2:+2116158 None:intergenic
ACTTACCTGGAAAGAGCATT+TGG 0.407981 8_2:-2117003 Msa1227030:CDS
TTAGGTCAGGTAAATTCAAA+TGG 0.408410 8_2:-2115791 Msa1227030:CDS
CTGTCTGATGGCTTTAGAAA+AGG 0.409270 8_2:-2116182 Msa1227030:CDS
AGTACAAATCGTTTGAAGTC+TGG 0.409320 8_2:-2115929 Msa1227030:CDS
GTGCCCACCTTTGAAATTTG+AGG 0.411848 8_2:-2114880 Msa1227030:three_prime_UTR
ACTTGAGAAAGCCAATATAT+TGG 0.412594 8_2:-2115255 Msa1227030:CDS
TTTGAGGTGTAGATCTGATT+CGG 0.416437 8_2:-2114864 Msa1227030:three_prime_UTR
CCCATCTTCAGAGAAAGTTC+TGG 0.420092 8_2:+2116822 None:intergenic
ATCCTCCACAGAAGAATTAG+AGG 0.422192 8_2:+2115901 None:intergenic
CTCCTTGATCCACATACGTC+AGG 0.423689 8_2:+2118747 None:intergenic
TCTAGCTAATTTAGCATATG+TGG 0.425924 8_2:-2115660 Msa1227030:CDS
TCCAGAACTTTCTCTGAAGA+TGG 0.426206 8_2:-2116823 Msa1227030:CDS
GTTTATGTTGATCTCTTGCT+TGG 0.437855 8_2:-2115179 Msa1227030:CDS
GGGTGCATTTATTATCAACT+TGG 0.438451 8_2:-2116442 Msa1227030:CDS
AGGTTGGAGTTTGCGTTGTT+GGG 0.438726 8_2:-2116120 Msa1227030:CDS
TAGGTCAGGTAAATTCAAAT+GGG 0.442834 8_2:-2115790 Msa1227030:CDS
AGTAGCAGTAGGTTTAGGTC+AGG 0.443104 8_2:-2115804 Msa1227030:CDS
TTTATTTAAACTTACTCCAC+TGG 0.446826 8_2:+2115100 None:intergenic
AAGTAATCAGCAGCTTCCTT+TGG 0.448866 8_2:+2115506 None:intergenic
CAAGGCAATAAAGCTATTGA+TGG 0.449483 8_2:-2116518 Msa1227030:CDS
TGCAGTTTCTGATTCTTACT+AGG 0.451462 8_2:-2116657 Msa1227030:CDS
GATTGCGGTCCAGGTGAAGA+TGG 0.452924 8_2:-2116022 Msa1227030:CDS
ACGGAAGAGTCAAATTCATC+TGG 0.454205 8_2:+2118623 None:intergenic
AGTGTGGCCTCTGGACTGTT+GGG 0.456959 8_2:+2115209 None:intergenic
AGAGAGAAGAAAAGAAGAGA+TGG 0.459261 8_2:+2121345 None:intergenic
ATTAGCACTTGACCCTAAAT+CGG 0.466599 8_2:+2116864 None:intergenic
CTCGCATGGCGCTGATTCAA+AGG 0.471008 8_2:-2115834 Msa1227030:CDS
CTCCTTATAATTTATAATTG+TGG 0.472860 8_2:-2116313 Msa1227030:CDS
TAATTGTGGCGTGCAGCACT+TGG 0.477869 8_2:-2116299 Msa1227030:CDS
CACTGGGCAGGAACCTAATA+CGG 0.480274 8_2:+2115117 None:intergenic
GAAGATCAAATTCCAGGTAA+TGG 0.480624 8_2:-2116070 Msa1227030:CDS
TGGACCGCAATCATCCCCTT+TGG 0.482289 8_2:+2116033 None:intergenic
TTGAGGAAAACAATACTTTG+AGG 0.488148 8_2:+2115341 None:intergenic
TGGAGTTTGCGTTGTTGGGT+TGG 0.488841 8_2:-2116116 Msa1227030:CDS
CCCTTGCCTCCTCTGGCTTG+AGG 0.491163 8_2:+2115324 None:intergenic
TACAGAAATCGAAGGTTGAA+AGG 0.491648 8_2:+2121160 None:intergenic
GCAATTTCTCACAGTCGTCT+TGG 0.492027 8_2:+2115438 None:intergenic
GATTCCATGTGTCCATTACC+TGG 0.493805 8_2:+2116058 None:intergenic
ACCTGAAAACTGCGGTGCTA+AGG 0.495151 8_2:+2118670 None:intergenic
CTAAAACTGAGAGGTGGGCC+AGG 0.495933 8_2:+2115040 None:intergenic
ACTTGACCCTAAATCGGAAC+TGG 0.498812 8_2:+2116870 None:intergenic
TCCTCAAGCCAGAGGAGGCA+AGG 0.500133 8_2:-2115325 Msa1227030:CDS
GGTGCATTTATTATCAACTT+GGG 0.500962 8_2:-2116441 Msa1227030:CDS
ACCGCAATCATCCCCTTTGG+AGG 0.501986 8_2:+2116036 None:intergenic
TCGAGTTCCTTCAGAGAAGA+TGG 0.504101 8_2:-2116143 Msa1227030:CDS
GAGAGAAGAAAAGAAGAGAT+GGG 0.504253 8_2:+2121346 None:intergenic
GCAGCTGCAAGTGCCTTCAC+AGG 0.506606 8_2:+2115620 None:intergenic
AAGTGTGGCCTCTGGACTGT+TGG 0.507510 8_2:+2115208 None:intergenic
GCCCTAGAAAGATAATTTGA+AGG 0.508022 8_2:+2116736 None:intergenic
TGTCTGATGGCTTTAGAAAA+GGG 0.508915 8_2:-2116181 Msa1227030:CDS
TAATTGTTCGTCGCTGCGGA+AGG 0.510870 8_2:-2116377 Msa1227030:CDS
TATATATGTTACAAATGCTA+TGG 0.512096 8_2:+2114996 None:intergenic
AGAAGACCTAAAATTGAATG+AGG 0.513084 8_2:+2121206 None:intergenic
GACACATGGAATCCTCCAAA+GGG 0.513457 8_2:-2116048 Msa1227030:CDS
AAAGATTGATCCCATAAAAG+AGG 0.514143 8_2:-2118402 Msa1227030:intron
AAACATCGAGCTGCAAGTAT+TGG 0.514563 8_2:+2116265 None:intergenic
CGAGCTTTCCCTGACGTATG+TGG 0.514974 8_2:-2118756 Msa1227030:CDS
TGAAGTAATTTATAGCATCA+AGG 0.516031 8_2:-2119714 Msa1227030:intron
TCAAGAGGCACTGCCGAGCA+AGG 0.516316 8_2:+2115978 None:intergenic
GTGCGAATCAAGTTGACAAT+GGG 0.516578 8_2:-2116972 Msa1227030:CDS
GCCCTCTAATTCTTCTGTGG+AGG 0.516726 8_2:-2115903 Msa1227030:CDS
ACTGCGGTAAGTGTGGCCTC+TGG 0.518484 8_2:+2115200 None:intergenic
CCAGAACTTTCTCTGAAGAT+GGG 0.519413 8_2:-2116822 Msa1227030:CDS
TCGCGGTTGGTGGTTGAAGA+AGG 0.519971 8_2:+2121086 None:intergenic
GGAAGGAGAGTCGCGGTTGG+TGG 0.521129 8_2:+2121076 None:intergenic
CTGTAGAAGAGATAATCAAT+TGG 0.521353 8_2:-2115696 Msa1227030:CDS
TTAAACTTACTCCACTGGGC+AGG 0.522122 8_2:+2115105 None:intergenic
ACAGAAATCGAAGGTTGAAA+GGG 0.523361 8_2:+2121161 None:intergenic
AGATTTATCCTGTGAGAAAG+TGG 0.526008 8_2:+2116336 None:intergenic
GAAAACGCCGTCGTCGACTT+CGG 0.526520 8_2:+2121052 None:intergenic
TACAATATTTAGTGTTGCGA+CGG 0.531544 8_2:+2118604 None:intergenic
TGGGTTCACAAAATTTAACT+AGG 0.531972 8_2:-2116771 Msa1227030:CDS
CCTTCAGAGAAGATGGAGGT+TGG 0.536210 8_2:-2116136 Msa1227030:CDS
TAATTTGAAGGAGGGCCCGC+TGG 0.537167 8_2:+2116748 None:intergenic
AGGCCATGTTTATGCGGCAG+AGG 0.537177 8_2:-2115549 Msa1227030:CDS
TGACTATGCAAAGACGGTAT+CGG 0.537690 8_2:-2118444 Msa1227030:CDS
GGTCAGTTACAGGTGGAGAC+TGG 0.541629 8_2:-2114912 Msa1227030:three_prime_UTR
GCTCAAGTTGCAACTTTGCA+AGG 0.542130 8_2:-2116680 Msa1227030:CDS
TTAGGATGTGTTGACTTACC+TGG 0.542332 8_2:-2117016 Msa1227030:intron
ACAAAATTTAACTAGGCCAG+CGG 0.543822 8_2:-2116764 Msa1227030:CDS
CTGGAAAGAGCATTTGGTGT+TGG 0.545410 8_2:-2116997 Msa1227030:CDS
CATGGTTATATCATTGTGCC+TGG 0.547330 8_2:-2115058 Msa1227030:three_prime_UTR
AAAGTTGCTTTGGGGTCCAA+AGG 0.549173 8_2:-2118701 Msa1227030:CDS
CTTGCCCTCTAATTCTTCTG+TGG 0.550070 8_2:-2115906 Msa1227030:CDS
TGGGGACACAAAAGAACAGA+AGG 0.552001 8_2:-2115771 Msa1227030:CDS
TAATTTAGCATATGTGGAGC+TGG 0.553226 8_2:-2115654 Msa1227030:CDS
TAACTAATTGTTCGTCGCTG+CGG 0.554213 8_2:-2116381 Msa1227030:CDS
TTATCATATTATTTGTCTGG+AGG 0.555300 8_2:-2115485 Msa1227030:CDS
CCTCAAGCCAGAGGAGGCAA+GGG 0.555731 8_2:-2115324 Msa1227030:CDS
TCTACAAGCAGCCCCTCTTG+TGG 0.557200 8_2:-2116222 Msa1227030:CDS
ACATATATAAGTTCAATTCA+GGG 0.557754 8_2:-2114982 Msa1227030:three_prime_UTR
ATCAGCAGCAGATTCACTAA+TGG 0.559636 8_2:+2116897 None:intergenic
GTCCTCATTCTTCTTCTCGA+AGG 0.559829 8_2:-2116407 Msa1227030:CDS
TCCCTGACGTATGTGGATCA+AGG 0.561251 8_2:-2118749 Msa1227030:CDS
ATTGCGGTCCAGGTGAAGAT+GGG 0.563635 8_2:-2116021 Msa1227030:CDS
TTCAGCCGCCCATCTTCACC+TGG 0.564293 8_2:+2116013 None:intergenic
TTGATGCATCATGGCATGCA+AGG 0.565171 8_2:+2118230 None:intergenic
AGCCAATATATTGGTTACAC+AGG 0.567649 8_2:-2115246 Msa1227030:CDS
CTTCAAACGATTTGTACTGT+AGG 0.570669 8_2:+2115934 None:intergenic
ATTGCGGAATTCTTCCGAGA+TGG 0.572442 8_2:-2119761 Msa1227030:CDS
ACTCTCAGAATGCTGTCTGA+TGG 0.572565 8_2:-2116194 Msa1227030:CDS
CCAATTCCTCGATCTCGCTA+TGG 0.573008 8_2:-2121135 Msa1227030:exon
CAAAATTTAACTAGGCCAGC+GGG 0.573602 8_2:-2116763 Msa1227030:CDS
AGTTATCGATGTCCCTTGCT+CGG 0.573739 8_2:-2115991 Msa1227030:CDS
TCTTTGCATAGTCATGAAGA+TGG 0.574380 8_2:+2118453 None:intergenic
AACATAAACTGCGGTAAGTG+TGG 0.574544 8_2:+2115193 None:intergenic
GAGCCTCTGCCGCATAAACA+TGG 0.574948 8_2:+2115546 None:intergenic
CCGTCGTCGACTTCGGCGGA+AGG 0.575192 8_2:+2121059 None:intergenic
TATGTTACAAATGCTATGGA+AGG 0.577330 8_2:+2115000 None:intergenic
AAAGCTGGCCACTTTCTCAC+AGG 0.580528 8_2:-2116344 Msa1227030:CDS
TACACCTCAAATTTCAAAGG+TGG 0.581359 8_2:+2114876 None:intergenic
AGCAAAACGAGAAGTCAAGC+TGG 0.582165 8_2:-2116623 Msa1227030:CDS
CTTCATGAGTGTTGTATGCA+TGG 0.582593 8_2:-2115076 Msa1227030:exon
GCAGATTCACTAATGGTGAC+AGG 0.584111 8_2:+2116904 None:intergenic
CCAACCTCCATCTTCTCTGA+AGG 0.584845 8_2:+2116136 None:intergenic
AGCGTCTTTGGCAAGAGCGA+CGG 0.587657 8_2:+2121022 None:intergenic
AGATTTCAAAATCAGAGCCA+TGG 0.588061 8_2:+2116570 None:intergenic
GACCCTAAATCGGAACTGGA+TGG 0.589437 8_2:+2116874 None:intergenic
TTGCTTGCTGAATAGACCAA+AGG 0.592584 8_2:-2115522 Msa1227030:CDS
ATCTACACCTCAAATTTCAA+AGG 0.594253 8_2:+2114873 None:intergenic
AGAAGAATTCTTCGCAGCAG+TGG 0.594658 8_2:+2115373 None:intergenic
AAAATGGAGGCAACTTGTTG+TGG 0.594821 8_2:-2116092 Msa1227030:CDS
GCTAACTAAAACTGAGAGGT+GGG 0.595541 8_2:+2115035 None:intergenic
GAAGACCTAAAATTGAATGA+GGG 0.595870 8_2:+2121207 None:intergenic
GGCGGAAGGAGAGTCGCGGT+TGG 0.596914 8_2:+2121073 None:intergenic
TCAATAGCTTTATTGCCTTG+CGG 0.597488 8_2:+2116521 None:intergenic
ACTTCATAATATAGCAATTG+CGG 0.598887 8_2:-2119777 Msa1227030:CDS
TGGGATCAGAACAACCATCT+CGG 0.604284 8_2:+2119747 None:intergenic
GCAAGTGAAGAGCATTCAAG+AGG 0.607592 8_2:+2115963 None:intergenic
GCGGTCCAGGTGAAGATGGG+CGG 0.607734 8_2:-2116018 Msa1227030:CDS
AGTTTGGCTAGAGCTTCTTG+TGG 0.608455 8_2:+2115152 None:intergenic
CAAGAGGCACTGCCGAGCAA+GGG 0.610077 8_2:+2115979 None:intergenic
TTATTTAAACTTACTCCACT+GGG 0.610575 8_2:+2115101 None:intergenic
TTTATAATTCTCAAATTTAG+GGG 0.612048 8_2:-2114933 Msa1227030:three_prime_UTR
TAGAAAGATAATTTGAAGGA+GGG 0.612465 8_2:+2116740 None:intergenic
CTGAGAGTCGGAGCCACAAG+AGG 0.612920 8_2:+2116209 None:intergenic
AGTGCGAATCAAGTTGACAA+TGG 0.613308 8_2:-2116973 Msa1227030:CDS
TGAGAGTCGGAGCCACAAGA+GGG 0.614527 8_2:+2116210 None:intergenic
TGCTAACTAAAACTGAGAGG+TGG 0.615670 8_2:+2115034 None:intergenic
GGAGAGCTAGTTAACAACGT+TGG 0.616643 8_2:-2118728 Msa1227030:CDS
GTGAGAAATTGCAAGTAGAG+AGG 0.617140 8_2:-2115427 Msa1227030:CDS
CTTTCTAGGCCATGTTTATG+CGG 0.617146 8_2:-2115555 Msa1227030:CDS
TCCTTGATCCACATACGTCA+GGG 0.618812 8_2:+2118748 None:intergenic
TCTTCATGACTATGCAAAGA+CGG 0.619165 8_2:-2118450 Msa1227030:CDS
CTAGAAAGATAATTTGAAGG+AGG 0.619288 8_2:+2116739 None:intergenic
AACGCCGTCGTCGACTTCGG+CGG 0.619375 8_2:+2121055 None:intergenic
GGACACATGGAATCCTCCAA+AGG 0.619856 8_2:-2116049 Msa1227030:CDS
GGCGTGCAGCACTTGGCTTG+TGG 0.620925 8_2:-2116292 Msa1227030:CDS
GACATCTTCATAATACGAGA+GGG 0.621685 8_2:+2115718 None:intergenic
TCAGACAGCATTCTGAGAGT+CGG 0.626085 8_2:+2116197 None:intergenic
AGTTAATTAAGATTAAAACA+TGG 0.626556 8_2:+2121267 None:intergenic
GCTGTAATGTCTGCAATGCA+GGG 0.627280 8_2:-2115281 Msa1227030:CDS
AAACAAACCTAACGATCCAA+AGG 0.627463 8_2:-2120937 Msa1227030:intron
ACACCTCAAATTTCAAAGGT+GGG 0.628313 8_2:+2114877 None:intergenic
ATTTAGGGGTCAGTTACAGG+TGG 0.628386 8_2:-2114919 Msa1227030:three_prime_UTR
GGAATTGGACAATCCTGTGA+AGG 0.628752 8_2:-2115633 Msa1227030:CDS
TCCTCCAAAGGGGATGATTG+CGG 0.629680 8_2:-2116037 Msa1227030:CDS
GAGATTCCATAGCGAGATCG+AGG 0.630763 8_2:+2121129 None:intergenic
TGCCTTCGAGAAGAAGAATG+AGG 0.637009 8_2:+2116405 None:intergenic
TGCTCGTGGTAACCACCGCA+AGG 0.638172 8_2:-2116536 Msa1227030:CDS
AATTCCAGGTAATGGACACA+TGG 0.638460 8_2:-2116062 Msa1227030:CDS
AGGTCAGGTAAATTCAAATG+GGG 0.643683 8_2:-2115789 Msa1227030:CDS
ATAGCTTTATTGCCTTGCGG+TGG 0.644670 8_2:+2116524 None:intergenic
AATTGGAATACAGAAATCGA+AGG 0.647423 8_2:+2121152 None:intergenic
TCTCAGCTTGAATATGCTCG+TGG 0.650885 8_2:-2116550 Msa1227030:CDS
GAATTTGAAGACGTAAATGG+AGG 0.652933 8_2:-2115398 Msa1227030:CDS
CTGGCGATGAACATTGCACG+TGG 0.654787 8_2:-2116604 Msa1227030:CDS
TCCTCCACAGAAGAATTAGA+GGG 0.662228 8_2:+2115902 None:intergenic
CCTTCCGCCGAAGTCGACGA+CGG 0.663917 8_2:-2121059 Msa1227030:CDS
AGACATCTTCATAATACGAG+AGG 0.664656 8_2:+2115717 None:intergenic
TTGGAAATAAAGTTGCTTTG+GGG 0.665560 8_2:-2118709 Msa1227030:CDS
ACGTGGAAGAGATTCATCCA+TGG 0.672916 8_2:-2116587 Msa1227030:CDS
CATATTGCCCAACAGTCCAG+AGG 0.674235 8_2:-2115216 Msa1227030:CDS
CTTCGGCGGAAGGAGAGTCG+CGG 0.674763 8_2:+2121069 None:intergenic
ATCAAGTAATAGAACAGACA+CGG 0.680364 8_2:-2116494 Msa1227030:CDS
CGTATTAGGTTCCTGCCCAG+TGG 0.693267 8_2:-2115116 Msa1227030:CDS
GACACAAAAGAACAGAAGGG+AGG 0.694944 8_2:-2115767 Msa1227030:CDS
ACCTGCTAACTAAAACTGAG+AGG 0.697545 8_2:+2115031 None:intergenic
GAGAGTCGGAGCCACAAGAG+GGG 0.698061 8_2:+2116211 None:intergenic
AGTTCCTTCAGAGAAGATGG+AGG 0.705068 8_2:-2116140 Msa1227030:CDS
GGGGACACAAAAGAACAGAA+GGG 0.706066 8_2:-2115770 Msa1227030:CDS
CAAGAGATCAACATAAACTG+CGG 0.708853 8_2:+2115184 None:intergenic
ACACATGGAATCCTCCAAAG+GGG 0.737500 8_2:-2116047 Msa1227030:CDS
CTATTTACACCTGAAAACTG+CGG 0.737778 8_2:+2118662 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAGAATTTTAAATGTTT+TGG - chr8_2:2115875-2115894 Msa1227030:CDS 10.0%
!!! TTTAGAATTTTAAATGTTTT+GGG - chr8_2:2115876-2115895 Msa1227030:CDS 10.0%
!!! TTTCTTTAAAAATTATAATG+GGG - chr8_2:2117779-2117798 Msa1227030:intron 10.0%
!!! TTTTTTTTTTTTTTTTTGAG+GGG - chr8_2:2118559-2118578 Msa1227030:intron 10.0%
!!! TTTTTATAATTCTCAAATTT+AGG - chr8_2:2121190-2121209 Msa1227030:five_prime_UTR 10.0%
!!! TTTTATAATTCTCAAATTTA+GGG - chr8_2:2121191-2121210 Msa1227030:five_prime_UTR 10.0%
!! AGTTAATTAAGATTAAAACA+TGG + chr8_2:2114861-2114880 None:intergenic 15.0%
!!! GAAAGAAAATTTTATTAGAT+CGG - chr8_2:2115566-2115585 Msa1227030:CDS 15.0%
!!! ACTTATTCATGTAAATATTT+TGG - chr8_2:2116677-2116696 Msa1227030:CDS 15.0%
!!! CTTATTCATGTAAATATTTT+GGG - chr8_2:2116678-2116697 Msa1227030:CDS 15.0%
!!! TTATTCATGTAAATATTTTG+GGG - chr8_2:2116679-2116698 Msa1227030:CDS 15.0%
!! GAAAGATAATATTATAAGTT+AGG - chr8_2:2117037-2117056 Msa1227030:intron 15.0%
!! AGTTAATTGAAATTGATATA+AGG + chr8_2:2117560-2117579 None:intergenic 15.0%
!!! TTCTTTAAAAATTATAATGG+GGG - chr8_2:2117780-2117799 Msa1227030:intron 15.0%
!!! TTTATTTTTTAATGATTGCA+AGG - chr8_2:2117959-2117978 Msa1227030:intron 15.0%
!! TACAATTAGAGAATTTAAAA+AGG + chr8_2:2119057-2119076 None:intergenic 15.0%
!! TTTATAATTCTCAAATTTAG+GGG - chr8_2:2121192-2121211 Msa1227030:five_prime_UTR 15.0%
!! ATTAAGATTAAAACATGGTT+TGG + chr8_2:2114856-2114875 None:intergenic 20.0%
!!! TTGAGTTTATTTTCTTGATA+AGG - chr8_2:2115652-2115671 Msa1227030:CDS 20.0%
!!! TGAGTTTATTTTCTTGATAA+GGG - chr8_2:2115653-2115672 Msa1227030:CDS 20.0%
!! ATTGAGTAATGATAATATCA+TGG - chr8_2:2115799-2115818 Msa1227030:CDS 20.0%
!! TGAATCATTATTTGTTTGTT+TGG - chr8_2:2115991-2116010 Msa1227030:CDS 20.0%
!!! ATTCAGTATGTGATTTATTT+TGG - chr8_2:2116115-2116134 Msa1227030:CDS 20.0%
!!! TTCAGTATGTGATTTATTTT+GGG - chr8_2:2116116-2116135 Msa1227030:CDS 20.0%
!!! TTCAGTTTTCTAATACATAA+CGG + chr8_2:2116546-2116565 None:intergenic 20.0%
!!! ACTTTTGTAAACAAAAAGTT+TGG - chr8_2:2116634-2116653 Msa1227030:CDS 20.0%
!! TTTACATGAATAAGTATCAA+AGG + chr8_2:2116672-2116691 None:intergenic 20.0%
!! GAAACTATCAATAACAAATA+AGG + chr8_2:2116770-2116789 None:intergenic 20.0%
!!! GTATTCTTTTATTCAAATGA+AGG + chr8_2:2116821-2116840 None:intergenic 20.0%
!! ACTTGTAAATATTATCTTTC+AGG + chr8_2:2116964-2116983 None:intergenic 20.0%
!! ATTTACAAGTTAAGAAATAC+TGG - chr8_2:2116974-2116993 Msa1227030:CDS 20.0%
!! TATTATAAGTTAGGAAATAC+TGG - chr8_2:2117046-2117065 Msa1227030:intron 20.0%
!! TGAATATAAAACGTATTTGA+AGG + chr8_2:2117230-2117249 None:intergenic 20.0%
!!! TACTTATCCTTTTTTTCTTT+GGG - chr8_2:2117324-2117343 Msa1227030:intron 20.0%
!! TACGATAATATTATATTAGC+TGG - chr8_2:2117936-2117955 Msa1227030:intron 20.0%
!!! TTTCTTACTTCTTTTATTAG+CGG - chr8_2:2118040-2118059 Msa1227030:intron 20.0%
!! GAATAAAACAGTAAAGTAAA+TGG + chr8_2:2118706-2118725 None:intergenic 20.0%
!! TTTAATCACATTAATAGAGA+TGG + chr8_2:2118854-2118873 None:intergenic 20.0%
!!! TCTTAATTTTGTTAGTCAAT+GGG - chr8_2:2119010-2119029 Msa1227030:intron 20.0%
!! CTCCTTATAATTTATAATTG+TGG - chr8_2:2119812-2119831 Msa1227030:intron 20.0%
!! TACTTATCATATTATTTGTC+TGG - chr8_2:2120637-2120656 Msa1227030:intron 20.0%
!! TATATATGTTACAAATGCTA+TGG + chr8_2:2121132-2121151 None:intergenic 20.0%
!! AACATATATAAGTTCAATTC+AGG - chr8_2:2121142-2121161 Msa1227030:five_prime_UTR 20.0%
!! ACATATATAAGTTCAATTCA+GGG - chr8_2:2121143-2121162 Msa1227030:five_prime_UTR 20.0%
!!! TTGTGTTTTTTATTTTCTAG+AGG - chr8_2:2121285-2121304 Msa1227030:five_prime_UTR 20.0%
!! ATATTGAGAAAACTAAAAAG+TGG - chr8_2:2121345-2121364 Msa1227030:five_prime_UTR 20.0%
! TGAATTAGATTGAATACCTT+TGG + chr8_2:2115207-2115226 None:intergenic 25.0%
!!! ATTTTGTTATTTTCTTCGTG+AGG - chr8_2:2115300-2115319 Msa1227030:CDS 25.0%
!! TAGAAAGTATGTGAATTAGT+TGG - chr8_2:2115454-2115473 Msa1227030:CDS 25.0%
! ATCTTTCTGTATTATTACGA+CGG - chr8_2:2115932-2115951 Msa1227030:CDS 25.0%
!!! TCAGTATGTGATTTATTTTG+GGG - chr8_2:2116117-2116136 Msa1227030:CDS 25.0%
! AGACTTAGAAAAAAGAATTG+TGG + chr8_2:2116305-2116324 None:intergenic 25.0%
! TTGAAGTTCCTATATATTTC+AGG - chr8_2:2116324-2116343 Msa1227030:CDS 25.0%
!! ATGAAGTACCTGAAATATAT+AGG + chr8_2:2116335-2116354 None:intergenic 25.0%
! ACTTCATAATATAGCAATTG+CGG - chr8_2:2116348-2116367 Msa1227030:CDS 25.0%
!! ATTACTTCAAGCAACTTTTT+GGG + chr8_2:2116400-2116419 None:intergenic 25.0%
!! AATTACTTCAAGCAACTTTT+TGG + chr8_2:2116401-2116420 None:intergenic 25.0%
! TGAAGTAATTTATAGCATCA+AGG - chr8_2:2116411-2116430 Msa1227030:CDS 25.0%
!!! TAGCTTTAGTTTTTCATGTT+TGG - chr8_2:2116490-2116509 Msa1227030:CDS 25.0%
!! TTTTTCATGTTTGGTATTTG+AGG - chr8_2:2116499-2116518 Msa1227030:CDS 25.0%
! AACTCACGCATTAAAATAAT+GGG + chr8_2:2116792-2116811 None:intergenic 25.0%
! AAACTCACGCATTAAAATAA+TGG + chr8_2:2116793-2116812 None:intergenic 25.0%
!!! ATTATTTTAATGCGTGAGTT+TGG - chr8_2:2116792-2116811 Msa1227030:CDS 25.0%
!!! CTACTTATCCTTTTTTTCTT+TGG - chr8_2:2117323-2117342 Msa1227030:intron 25.0%
! ATAAACTCCCAAAGAAAAAA+AGG + chr8_2:2117334-2117353 None:intergenic 25.0%
! GAGTTTATTCAGAGAAAATA+TGG - chr8_2:2117346-2117365 Msa1227030:intron 25.0%
!! ATATACCATACCTCTTTTAT+GGG + chr8_2:2117736-2117755 None:intergenic 25.0%
!! TATATACCATACCTCTTTTA+TGG + chr8_2:2117737-2117756 None:intergenic 25.0%
!! TTCTTACTTCTTTTATTAGC+GGG - chr8_2:2118041-2118060 Msa1227030:intron 25.0%
! ATAAGGGAGAAGTTTAAAAA+GGG - chr8_2:2118509-2118528 Msa1227030:intron 25.0%
!! TTGAAATTAGCAATTGGTTT+GGG - chr8_2:2118600-2118619 Msa1227030:intron 25.0%
! ATAATAAACAAGGATATACC+AGG - chr8_2:2118802-2118821 Msa1227030:intron 25.0%
! AATATACAGAATATAGATCC+TGG + chr8_2:2118823-2118842 None:intergenic 25.0%
!!! TGAAAGTTTGTTGTAGAATT+GGG - chr8_2:2118875-2118894 Msa1227030:intron 25.0%
!! GTCTTAATTTTGTTAGTCAA+TGG - chr8_2:2119009-2119028 Msa1227030:intron 25.0%
! TAGAAAGATAATTTGAAGGA+GGG + chr8_2:2119388-2119407 None:intergenic 25.0%
! TCCTTCAAATTATCTTTCTA+GGG - chr8_2:2119388-2119407 Msa1227030:intron 25.0%
!! AGCATTTTTAACAACAATCT+TGG - chr8_2:2119662-2119681 Msa1227030:intron 25.0%
!! GCATTTTTAACAACAATCTT+GGG - chr8_2:2119663-2119682 Msa1227030:intron 25.0%
! CGCCACAATTATAAATTATA+AGG + chr8_2:2119817-2119836 None:intergenic 25.0%
! TTACGACTTAAATTCTTTGA+AGG + chr8_2:2120268-2120287 None:intergenic 25.0%
! TTATCATATTATTTGTCTGG+AGG - chr8_2:2120640-2120659 Msa1227030:intron 25.0%
! TTATTTAAACTTACTCCACT+GGG + chr8_2:2121027-2121046 None:intergenic 25.0%
! TTTATTTAAACTTACTCCAC+TGG + chr8_2:2121028-2121047 None:intergenic 25.0%
!! TAAAAAGTGGATAGTTGTTT+TGG - chr8_2:2121358-2121377 Msa1227030:five_prime_UTR 25.0%
CTTAGCAAAAACAACACAAA+GGG - chr8_2:2114806-2114825 Msa1227030:three_prime_UTR 30.0%
!! GATTAAAACATGGTTTGGTT+TGG + chr8_2:2114851-2114870 None:intergenic 30.0%
! ACTTTCCCTCATTCAATTTT+AGG - chr8_2:2114913-2114932 Msa1227030:three_prime_UTR 30.0%
GAAGACCTAAAATTGAATGA+GGG + chr8_2:2114921-2114940 None:intergenic 30.0%
AGAAGACCTAAAATTGAATG+AGG + chr8_2:2114922-2114941 None:intergenic 30.0%
AATTGGAATACAGAAATCGA+AGG + chr8_2:2114976-2114995 None:intergenic 30.0%
GAAAACGAAATCAAAGCAAT+CGG + chr8_2:2115237-2115256 None:intergenic 30.0%
CATCTTAATTGCTTCGTATT+AGG - chr8_2:2115256-2115275 Msa1227030:CDS 30.0%
TTCCAATAGTTGTGCTAAAA+GGG - chr8_2:2115624-2115643 Msa1227030:CDS 30.0%
! TAAGGGCAATTTTTATGAGT+TGG - chr8_2:2115670-2115689 Msa1227030:CDS 30.0%
!! CATTGATGCTACTTGATTTT+CGG - chr8_2:2115712-2115731 Msa1227030:CDS 30.0%
TTTGTATACATGACAGTTAC+TGG - chr8_2:2115739-2115758 Msa1227030:CDS 30.0%
!!! GTGTTACTTTTCTTCATGAA+TGG - chr8_2:2115827-2115846 Msa1227030:CDS 30.0%
!!! TATGTGATTTATTTTGGGGA+TGG - chr8_2:2116121-2116140 Msa1227030:CDS 30.0%
!!! GTATGTTACTTTTACACGTA+TGG - chr8_2:2116433-2116452 Msa1227030:CDS 30.0%
ATTAAAATGAAGGTAGACCT+AGG - chr8_2:2116600-2116619 Msa1227030:CDS 30.0%
AAAAGTCGAAATAATGACCT+AGG + chr8_2:2116620-2116639 None:intergenic 30.0%
ATGAATAAGTATCAAAGGCT+CGG + chr8_2:2116667-2116686 None:intergenic 30.0%
TTGCCAATTGGGAAATTAAT+TGG + chr8_2:2116705-2116724 None:intergenic 30.0%
TTAATTTCCCAATTGGCAAA+TGG - chr8_2:2116706-2116725 Msa1227030:CDS 30.0%
! TGAGTGTTTTCAATTGTTGA+AGG - chr8_2:2116744-2116763 Msa1227030:CDS 30.0%
TTTGTTCAAATTCCTTCTTC+TGG - chr8_2:2116893-2116912 Msa1227030:CDS 30.0%
TTGTTCAAATTCCTTCTTCT+GGG - chr8_2:2116894-2116913 Msa1227030:CDS 30.0%
TCTATTGGTATTCTTAAAGC+AGG - chr8_2:2116919-2116938 Msa1227030:CDS 30.0%
TACAAGTTAAGAAATACTGG+TGG - chr8_2:2116977-2116996 Msa1227030:CDS 30.0%
ACAAGTTAAGAAATACTGGT+GGG - chr8_2:2116978-2116997 Msa1227030:CDS 30.0%
AATGTTTACCAAGTAAAAGC+TGG - chr8_2:2117100-2117119 Msa1227030:intron 30.0%
TTATGTTCTCTCTTCTGTTA+TGG - chr8_2:2117170-2117189 Msa1227030:intron 30.0%
TATTCAACTTAATGCTGTTC+AGG - chr8_2:2117244-2117263 Msa1227030:intron 30.0%
! GTTGGAAATAAAGTTGCTTT+GGG - chr8_2:2117415-2117434 Msa1227030:intron 30.0%
! TTGGAAATAAAGTTGCTTTG+GGG - chr8_2:2117416-2117435 Msa1227030:intron 30.0%
TACAATATTTAGTGTTGCGA+CGG + chr8_2:2117524-2117543 None:intergenic 30.0%
!! TTTGTTATTTCAACCTCTCT+AGG - chr8_2:2117636-2117655 Msa1227030:intron 30.0%
!!! GGATCAATCTTTTGAAATAG+GGG + chr8_2:2117715-2117734 None:intergenic 30.0%
!!! GGGATCAATCTTTTGAAATA+GGG + chr8_2:2117716-2117735 None:intergenic 30.0%
!!! TGGGATCAATCTTTTGAAAT+AGG + chr8_2:2117717-2117736 None:intergenic 30.0%
AAAGATTGATCCCATAAAAG+AGG - chr8_2:2117723-2117742 Msa1227030:intron 30.0%
!! AATTATAATGGGGGTGTTAA+TGG - chr8_2:2117789-2117808 Msa1227030:intron 30.0%
! TCTTACTTCTTTTATTAGCG+GGG - chr8_2:2118042-2118061 Msa1227030:intron 30.0%
! GCATAAATTGATTTCTCTCT+CGG + chr8_2:2118325-2118344 None:intergenic 30.0%
TTGCTGTATGTGTATATCTA+AGG - chr8_2:2118435-2118454 Msa1227030:CDS 30.0%
TGCTGTATGTGTATATCTAA+GGG - chr8_2:2118436-2118455 Msa1227030:CDS 30.0%
AAAATGTGCTGCAATTGATA+AGG - chr8_2:2118492-2118511 Msa1227030:intron 30.0%
AAATGTGCTGCAATTGATAA+GGG - chr8_2:2118493-2118512 Msa1227030:intron 30.0%
GATAAGGGAGAAGTTTAAAA+AGG - chr8_2:2118508-2118527 Msa1227030:intron 30.0%
GCTAACTTGAAATTAGCAAT+TGG - chr8_2:2118594-2118613 Msa1227030:intron 30.0%
CTTGAAATTAGCAATTGGTT+TGG - chr8_2:2118599-2118618 Msa1227030:intron 30.0%
! TTGTTACTGATCATTTTGCA+AGG - chr8_2:2118660-2118679 Msa1227030:CDS 30.0%
!! GTTTTATTCATCTTGTAGAG+AGG - chr8_2:2118717-2118736 Msa1227030:CDS 30.0%
! GTTTTCTTCTATTCCGATTT+TGG - chr8_2:2118768-2118787 Msa1227030:CDS 30.0%
ACCTAACAGCATAATAAACA+AGG - chr8_2:2118792-2118811 Msa1227030:intron 30.0%
! TCCTTGTTTATTATGCTGTT+AGG + chr8_2:2118796-2118815 None:intergenic 30.0%
!! CTGAAAGTTTGTTGTAGAAT+TGG - chr8_2:2118874-2118893 Msa1227030:intron 30.0%
! TGTAAAACTTTCTTGATAGC+TGG - chr8_2:2118935-2118954 Msa1227030:intron 30.0%
TGGGTTCACAAAATTTAACT+AGG - chr8_2:2119354-2119373 Msa1227030:intron 30.0%
CTAGAAAGATAATTTGAAGG+AGG + chr8_2:2119389-2119408 None:intergenic 30.0%
CTCCTTCAAATTATCTTTCT+AGG - chr8_2:2119387-2119406 Msa1227030:intron 30.0%
!! AAATTATCTTTCTAGGGCTT+TGG - chr8_2:2119394-2119413 Msa1227030:intron 30.0%
ATCAAGTAATAGAACAGACA+CGG - chr8_2:2119631-2119650 Msa1227030:intron 30.0%
GGTGCATTTATTATCAACTT+GGG - chr8_2:2119684-2119703 Msa1227030:intron 30.0%
TTAGGTCAGGTAAATTCAAA+TGG - chr8_2:2120334-2120353 Msa1227030:intron 30.0%
TAGGTCAGGTAAATTCAAAT+GGG - chr8_2:2120335-2120354 Msa1227030:intron 30.0%
CTGTAGAAGAGATAATCAAT+TGG - chr8_2:2120429-2120448 Msa1227030:intron 30.0%
TCTAGCTAATTTAGCATATG+TGG - chr8_2:2120465-2120484 Msa1227030:intron 30.0%
!! ATGTAAATTCTGGAACATTC+TGG + chr8_2:2120550-2120569 None:intergenic 30.0%
TCCAGAATTTACATCTTTCT+AGG - chr8_2:2120556-2120575 Msa1227030:intron 30.0%
GTTGAATTTGAAGACGTAAA+TGG - chr8_2:2120724-2120743 Msa1227030:intron 30.0%
TTGAGGAAAACAATACTTTG+AGG + chr8_2:2120787-2120806 None:intergenic 30.0%
ACTTGAGAAAGCCAATATAT+TGG - chr8_2:2120870-2120889 Msa1227030:intron 30.0%
TAAAAAGTTGTAGCCGTATT+AGG - chr8_2:2120995-2121014 Msa1227030:CDS 30.0%
TATGTTACAAATGCTATGGA+AGG + chr8_2:2121128-2121147 None:intergenic 30.0%
ATCTACACCTCAAATTTCAA+AGG + chr8_2:2121255-2121274 None:intergenic 30.0%
GAGAGAAGAAAAGAAGAGAT+GGG + chr8_2:2114782-2114801 None:intergenic 35.0%
AGAGAGAAGAAAAGAAGAGA+TGG + chr8_2:2114783-2114802 None:intergenic 35.0%
!!! CCTTTGTGTTGTTTTTGCTA+AGG + chr8_2:2114808-2114827 None:intergenic 35.0%
CCTTAGCAAAAACAACACAA+AGG - chr8_2:2114805-2114824 Msa1227030:three_prime_UTR 35.0%
ACAGAAATCGAAGGTTGAAA+GGG + chr8_2:2114967-2114986 None:intergenic 35.0%
TACAGAAATCGAAGGTTGAA+AGG + chr8_2:2114968-2114987 None:intergenic 35.0%
!! ATAATGCAAAGAAGCGTCTT+TGG + chr8_2:2115118-2115137 None:intergenic 35.0%
GCTTCTTTGCATTATCAATC+TGG - chr8_2:2115123-2115142 Msa1227030:CDS 35.0%
AAACAAACCTAACGATCCAA+AGG - chr8_2:2115188-2115207 Msa1227030:CDS 35.0%
TTGAATACCTTTGGATCGTT+AGG + chr8_2:2115198-2115217 None:intergenic 35.0%
GTTACTTACATCACATCACA+TGG + chr8_2:2115538-2115557 None:intergenic 35.0%
GTGATGTAAGTAACGAGTAT+CGG - chr8_2:2115544-2115563 Msa1227030:CDS 35.0%
GTTCCAATAGTTGTGCTAAA+AGG - chr8_2:2115623-2115642 Msa1227030:CDS 35.0%
TCCAATAGTTGTGCTAAAAG+GGG - chr8_2:2115625-2115644 Msa1227030:CDS 35.0%
GCTCTTAACAAGCTTGAAAA+TGG + chr8_2:2116195-2116214 None:intergenic 35.0%
!! TTCAAGCTTGTTAAGAGCAA+AGG - chr8_2:2116197-2116216 Msa1227030:CDS 35.0%
! AGAGCAAAGGACAATGATTT+TGG - chr8_2:2116210-2116229 Msa1227030:CDS 35.0%
!! CAAAGGACAATGATTTTGGT+GGG - chr8_2:2116214-2116233 Msa1227030:CDS 35.0%
AAGATAACTCAAGGCTTGAT+GGG + chr8_2:2116257-2116276 None:intergenic 35.0%
AAAGATAACTCAAGGCTTGA+TGG + chr8_2:2116258-2116277 None:intergenic 35.0%
CACAACGAAAAGATAACTCA+AGG + chr8_2:2116266-2116285 None:intergenic 35.0%
AGCTATTGCAAAATTGAGAC+TGG + chr8_2:2116475-2116494 None:intergenic 35.0%
CGACAGCAAGATTAAAATGA+AGG - chr8_2:2116590-2116609 Msa1227030:CDS 35.0%
CAAGTTAAGAAATACTGGTG+GGG - chr8_2:2116979-2116998 Msa1227030:CDS 35.0%
CATAAAAGTCTACATGCTGT+AGG + chr8_2:2117155-2117174 None:intergenic 35.0%
CGTTGGAAATAAAGTTGCTT+TGG - chr8_2:2117414-2117433 Msa1227030:intron 35.0%
CTATTTACACCTGAAAACTG+CGG + chr8_2:2117466-2117485 None:intergenic 35.0%
TCTTTGCATAGTCATGAAGA+TGG + chr8_2:2117675-2117694 None:intergenic 35.0%
TCTTCATGACTATGCAAAGA+CGG - chr8_2:2117675-2117694 Msa1227030:intron 35.0%
TTGATCCCATAAAAGAGGTA+TGG - chr8_2:2117728-2117747 Msa1227030:intron 35.0%
!! AGAAGAATTTGAGTTGCAAC+AGG + chr8_2:2118158-2118177 None:intergenic 35.0%
!! GATTGGCTGAATGTTTTCAT+TGG - chr8_2:2118199-2118218 Msa1227030:intron 35.0%
TTGAGATTTGTGCATTCTCA+TGG - chr8_2:2118366-2118385 Msa1227030:intron 35.0%
TGAGATTTGTGCATTCTCAT+GGG - chr8_2:2118367-2118386 Msa1227030:intron 35.0%
GGGTGAGATACATAAATGTT+GGG - chr8_2:2118390-2118409 Msa1227030:intron 35.0%
TGTGTATATCTAAGGGAGAT+AGG - chr8_2:2118443-2118462 Msa1227030:CDS 35.0%
TATATCTAAGGGAGATAGGA+TGG - chr8_2:2118447-2118466 Msa1227030:CDS 35.0%
ATATCTAAGGGAGATAGGAT+GGG - chr8_2:2118448-2118467 Msa1227030:CDS 35.0%
!! AATTGCAGCACATTTTGAGT+GGG + chr8_2:2118488-2118507 None:intergenic 35.0%
!!! TTTTTTGAGGGGATAACTGA+AGG - chr8_2:2118570-2118589 Msa1227030:intron 35.0%
!! TTTTTGAGGGGATAACTGAA+GGG - chr8_2:2118571-2118590 Msa1227030:intron 35.0%
!! AAATTAGCAATTGGTTTGGG+TGG - chr8_2:2118603-2118622 Msa1227030:intron 35.0%
ATGCTGTTAGGTACCAAAAT+CGG + chr8_2:2118784-2118803 None:intergenic 35.0%
ATTAGCACTTGACCCTAAAT+CGG + chr8_2:2119264-2119283 None:intergenic 35.0%
! TGATTATGCAGCCATGTTTT+TGG - chr8_2:2119328-2119347 Msa1227030:intron 35.0%
TGAACCCATATCCAAAAACA+TGG + chr8_2:2119342-2119361 None:intergenic 35.0%
ACAAAATTTAACTAGGCCAG+CGG - chr8_2:2119361-2119380 Msa1227030:intron 35.0%
GCCCTAGAAAGATAATTTGA+AGG + chr8_2:2119392-2119411 None:intergenic 35.0%
TGCAGTTTCTGATTCTTACT+AGG - chr8_2:2119468-2119487 Msa1227030:intron 35.0%
AGATTTCAAAATCAGAGCCA+TGG + chr8_2:2119558-2119577 None:intergenic 35.0%
!! TCAATAGCTTTATTGCCTTG+CGG + chr8_2:2119607-2119626 None:intergenic 35.0%
CAAGGCAATAAAGCTATTGA+TGG - chr8_2:2119607-2119626 Msa1227030:intron 35.0%
GGGTGCATTTATTATCAACT+TGG - chr8_2:2119683-2119702 Msa1227030:intron 35.0%
AGATTTATCCTGTGAGAAAG+TGG + chr8_2:2119792-2119811 None:intergenic 35.0%
! ATGTTTTCAGAAGGCAAGTT+TGG - chr8_2:2119877-2119896 Msa1227030:intron 35.0%
!! TGTCTGATGGCTTTAGAAAA+GGG - chr8_2:2119944-2119963 Msa1227030:intron 35.0%
GAACTCGACATGATTTGATT+AGG + chr8_2:2119970-2119989 None:intergenic 35.0%
GAAGATCAAATTCCAGGTAA+TGG - chr8_2:2120055-2120074 Msa1227030:intron 35.0%
CTTCAAACGATTTGTACTGT+AGG + chr8_2:2120194-2120213 None:intergenic 35.0%
! AGTACAAATCGTTTGAAGTC+TGG - chr8_2:2120196-2120215 Msa1227030:intron 35.0%
TTAAGTCGTAAAAACTCGCA+TGG - chr8_2:2120277-2120296 Msa1227030:intron 35.0%
! TTTTCAGTAGCAGTAGGTTT+AGG - chr8_2:2120316-2120335 Msa1227030:intron 35.0%
AGGTCAGGTAAATTCAAATG+GGG - chr8_2:2120336-2120355 Msa1227030:intron 35.0%
GACATCTTCATAATACGAGA+GGG + chr8_2:2120410-2120429 None:intergenic 35.0%
AGACATCTTCATAATACGAG+AGG + chr8_2:2120411-2120430 None:intergenic 35.0%
TAATTTAGCATATGTGGAGC+TGG - chr8_2:2120471-2120490 Msa1227030:intron 35.0%
GCCTAGAAAGATGTAAATTC+TGG + chr8_2:2120560-2120579 None:intergenic 35.0%
GAATTTGAAGACGTAAATGG+AGG - chr8_2:2120727-2120746 Msa1227030:intron 35.0%
! AGCCAATATATTGGTTACAC+AGG - chr8_2:2120879-2120898 Msa1227030:intron 35.0%
TGCCTGTGTAACCAATATAT+TGG + chr8_2:2120884-2120903 None:intergenic 35.0%
CAAGAGATCAACATAAACTG+CGG + chr8_2:2120944-2120963 None:intergenic 35.0%
GTTTATGTTGATCTCTTGCT+TGG - chr8_2:2120946-2120965 Msa1227030:CDS 35.0%
!!! ACGGCTACAACTTTTTAGTT+TGG + chr8_2:2120992-2121011 None:intergenic 35.0%
ACACCTCAAATTTCAAAGGT+GGG + chr8_2:2121251-2121270 None:intergenic 35.0%
TACACCTCAAATTTCAAAGG+TGG + chr8_2:2121252-2121271 None:intergenic 35.0%
! TTTGAGGTGTAGATCTGATT+CGG - chr8_2:2121261-2121280 Msa1227030:five_prime_UTR 35.0%
! TCGAAGGTTGAAAGGGTTTT+GGG + chr8_2:2114960-2114979 None:intergenic 40.0%
! ATCGAAGGTTGAAAGGGTTT+TGG + chr8_2:2114961-2114980 None:intergenic 40.0%
TTATTAGATCGGCGATGAAG+CGG - chr8_2:2115577-2115596 Msa1227030:CDS 40.0%
CCAATAGTTGTGCTAAAAGG+GGG - chr8_2:2115626-2115645 Msa1227030:CDS 40.0%
TCTACGCATTGAGAGCTAAA+AGG + chr8_2:2115902-2115921 None:intergenic 40.0%
! GCAAAGGACAATGATTTTGG+TGG - chr8_2:2116213-2116232 Msa1227030:CDS 40.0%
GGGCCAATTAATTTCCCAAT+TGG - chr8_2:2116699-2116718 Msa1227030:CDS 40.0%
ATACTGGGTACAAAAGGTAG+TGG + chr8_2:2116854-2116873 None:intergenic 40.0%
CACAGTATACTGGGTACAAA+AGG + chr8_2:2116860-2116879 None:intergenic 40.0%
! CTTTTGTACCCAGTATACTG+TGG - chr8_2:2116858-2116877 Msa1227030:CDS 40.0%
GAAATACTGGTGTAGATGAG+TGG - chr8_2:2117059-2117078 Msa1227030:intron 40.0%
TAAAAGCTGGTGCAGAAGAT+AGG - chr8_2:2117113-2117132 Msa1227030:intron 40.0%
TATGGTTTACCCCCAATGAA+AGG - chr8_2:2117188-2117207 Msa1227030:intron 40.0%
ACCAGTTGATCCTTTCATTG+GGG + chr8_2:2117201-2117220 None:intergenic 40.0%
CACCAGTTGATCCTTTCATT+GGG + chr8_2:2117202-2117221 None:intergenic 40.0%
ACACCAGTTGATCCTTTCAT+TGG + chr8_2:2117203-2117222 None:intergenic 40.0%
ACGGAAGAGTCAAATTCATC+TGG + chr8_2:2117505-2117524 None:intergenic 40.0%
AACCTCTCTAGGCTATTATC+TGG - chr8_2:2117647-2117666 Msa1227030:intron 40.0%
AACCAGATAATAGCCTAGAG+AGG + chr8_2:2117652-2117671 None:intergenic 40.0%
TGACTATGCAAAGACGGTAT+CGG - chr8_2:2117681-2117700 Msa1227030:intron 40.0%
GAAAGAGAACACAGAGTTAG+GGG + chr8_2:2117825-2117844 None:intergenic 40.0%
GGAAAGAGAACACAGAGTTA+GGG + chr8_2:2117826-2117845 None:intergenic 40.0%
AGGAAAGAGAACACAGAGTT+AGG + chr8_2:2117827-2117846 None:intergenic 40.0%
CTCTTTCCTAAAGCAGTCAA+CGG - chr8_2:2117838-2117857 Msa1227030:intron 40.0%
!! CAGCTGATTTTGATGCATCA+TGG + chr8_2:2117907-2117926 None:intergenic 40.0%
TCTTCTTCCCAAGCTAATGT+TGG - chr8_2:2118172-2118191 Msa1227030:intron 40.0%
CTTCTTCCCAAGCTAATGTT+GGG - chr8_2:2118173-2118192 Msa1227030:intron 40.0%
! ATCATGCCCAACATTAGCTT+GGG + chr8_2:2118182-2118201 None:intergenic 40.0%
AATCATGCCCAACATTAGCT+TGG + chr8_2:2118183-2118202 None:intergenic 40.0%
AAGCTAATGTTGGGCATGAT+TGG - chr8_2:2118182-2118201 Msa1227030:intron 40.0%
! ATCCTTTATTTGCAGCTGTC+TGG - chr8_2:2118247-2118266 Msa1227030:CDS 40.0%
GAGATTTGTGCATTCTCATG+GGG - chr8_2:2118368-2118387 Msa1227030:intron 40.0%
AGATTTGTGCATTCTCATGG+GGG - chr8_2:2118369-2118388 Msa1227030:intron 40.0%
GGGGTGAGATACATAAATGT+TGG - chr8_2:2118389-2118408 Msa1227030:intron 40.0%
GGTCTATGCACAGAAAATGT+GGG - chr8_2:2118411-2118430 Msa1227030:CDS 40.0%
! CAATTGCAGCACATTTTGAG+TGG + chr8_2:2118489-2118508 None:intergenic 40.0%
AGGGAGAAGTTTAAAAAGGG+AGG - chr8_2:2118512-2118531 Msa1227030:intron 40.0%
GGGAGAAGTTTAAAAAGGGA+GGG - chr8_2:2118513-2118532 Msa1227030:intron 40.0%
AAAAAGGGAGGGATTACTGA+AGG - chr8_2:2118524-2118543 Msa1227030:intron 40.0%
AAAAGGGAGGGATTACTGAA+GGG - chr8_2:2118525-2118544 Msa1227030:intron 40.0%
!! TTTTGAGGGGATAACTGAAG+GGG - chr8_2:2118572-2118591 Msa1227030:intron 40.0%
ATAGTTGCAGACTCTCTGTT+AGG - chr8_2:2118975-2118994 Msa1227030:intron 40.0%
! TGAGCTGGATCATTTTGCTT+AGG - chr8_2:2119091-2119110 Msa1227030:intron 40.0%
!! TTAGGATGTGTTGACTTACC+TGG - chr8_2:2119109-2119128 Msa1227030:intron 40.0%
!! ACTTACCTGGAAAGAGCATT+TGG - chr8_2:2119122-2119141 Msa1227030:intron 40.0%
!! AGTGCGAATCAAGTTGACAA+TGG - chr8_2:2119152-2119171 Msa1227030:intron 40.0%
!! GTGCGAATCAAGTTGACAAT+GGG - chr8_2:2119153-2119172 Msa1227030:intron 40.0%
ATCAGCAGCAGATTCACTAA+TGG + chr8_2:2119231-2119250 None:intergenic 40.0%
ATCCATCCAGTTCCGATTTA+GGG - chr8_2:2119249-2119268 Msa1227030:intron 40.0%
! TCCAGAACTTTCTCTGAAGA+TGG - chr8_2:2119302-2119321 Msa1227030:intron 40.0%
! CCAGAACTTTCTCTGAAGAT+GGG - chr8_2:2119303-2119322 Msa1227030:intron 40.0%
!!! TGCAGCCATGTTTTTGGATA+TGG - chr8_2:2119334-2119353 Msa1227030:intron 40.0%
!!! GCAGCCATGTTTTTGGATAT+GGG - chr8_2:2119335-2119354 Msa1227030:intron 40.0%
CAAAATTTAACTAGGCCAGC+GGG - chr8_2:2119362-2119381 Msa1227030:intron 40.0%
!!! CTTCTCGTTTTGCTGTTTTC+AGG + chr8_2:2119496-2119515 None:intergenic 40.0%
TAACTAATTGTTCGTCGCTG+CGG - chr8_2:2119744-2119763 Msa1227030:CDS 40.0%
AAACATCGAGCTGCAAGTAT+TGG + chr8_2:2119863-2119882 None:intergenic 40.0%
!! CTGTCTGATGGCTTTAGAAA+AGG - chr8_2:2119943-2119962 Msa1227030:intron 40.0%
!! TTGTTGGGTTGGAAAAATGG+AGG - chr8_2:2120020-2120039 Msa1227030:intron 40.0%
!! AAAATGGAGGCAACTTGTTG+TGG - chr8_2:2120033-2120052 Msa1227030:intron 40.0%
GTTGTGGAAGATCAAATTCC+AGG - chr8_2:2120049-2120068 Msa1227030:intron 40.0%
!! AATTCCAGGTAATGGACACA+TGG - chr8_2:2120063-2120082 Msa1227030:intron 40.0%
TCCTCCACAGAAGAATTAGA+GGG + chr8_2:2120226-2120245 None:intergenic 40.0%
ATCCTCCACAGAAGAATTAG+AGG + chr8_2:2120227-2120246 None:intergenic 40.0%
!! AAGGCATTTTCAGTAGCAGT+AGG - chr8_2:2120310-2120329 Msa1227030:intron 40.0%
CTTTCTAGGCCATGTTTATG+CGG - chr8_2:2120570-2120589 Msa1227030:intron 40.0%
! TTGCTTGCTGAATAGACCAA+AGG - chr8_2:2120603-2120622 Msa1227030:intron 40.0%
AAGTAATCAGCAGCTTCCTT+TGG + chr8_2:2120622-2120641 None:intergenic 40.0%
GTGAGAAATTGCAAGTAGAG+AGG - chr8_2:2120698-2120717 Msa1227030:intron 40.0%
TGCGAAGAATTCTTCTCTTC+AGG - chr8_2:2120759-2120778 Msa1227030:intron 40.0%
! TATTGTTTTCCTCAAGCCAG+AGG - chr8_2:2120792-2120811 Msa1227030:intron 40.0%
AACATAAACTGCGGTAAGTG+TGG + chr8_2:2120935-2120954 None:intergenic 40.0%
! CTTCATGAGTGTTGTATGCA+TGG - chr8_2:2121049-2121068 Msa1227030:CDS 40.0%
CATGGTTATATCATTGTGCC+TGG - chr8_2:2121067-2121086 Msa1227030:CDS 40.0%
GCTAACTAAAACTGAGAGGT+GGG + chr8_2:2121093-2121112 None:intergenic 40.0%
TGCTAACTAAAACTGAGAGG+TGG + chr8_2:2121094-2121113 None:intergenic 40.0%
!!! ACCTCTCAGTTTTAGTTAGC+AGG - chr8_2:2121093-2121112 Msa1227030:CDS 40.0%
ACCTGCTAACTAAAACTGAG+AGG + chr8_2:2121097-2121116 None:intergenic 40.0%
CAAATTTAGGGGTCAGTTAC+AGG - chr8_2:2121203-2121222 Msa1227030:five_prime_UTR 40.0%
! CGAAGGTTGAAAGGGTTTTG+GGG + chr8_2:2114959-2114978 None:intergenic 45.0%
! CCCCCTTTTAGCACAACTAT+TGG + chr8_2:2115629-2115648 None:intergenic 45.0%
! ACAGTTACTGGTCTCACCTA+AGG - chr8_2:2115751-2115770 Msa1227030:CDS 45.0%
TTGACTTAGAGCTGCACCTT+AGG + chr8_2:2115770-2115789 None:intergenic 45.0%
ATTGCGGAATTCTTCCGAGA+TGG - chr8_2:2116364-2116383 Msa1227030:CDS 45.0%
TGGGATCAGAACAACCATCT+CGG + chr8_2:2116381-2116400 None:intergenic 45.0%
TCCCAATTGGCAAATGGCTT+CGG - chr8_2:2116712-2116731 Msa1227030:CDS 45.0%
ACCGAAGCCATTTGCCAATT+GGG + chr8_2:2116716-2116735 None:intergenic 45.0%
TACCGAAGCCATTTGCCAAT+TGG + chr8_2:2116717-2116736 None:intergenic 45.0%
TGTACCCAGTATACTGTGGT+TGG - chr8_2:2116862-2116881 Msa1227030:CDS 45.0%
GTCACCAACCACAGTATACT+GGG + chr8_2:2116869-2116888 None:intergenic 45.0%
TGTCACCAACCACAGTATAC+TGG + chr8_2:2116870-2116889 None:intergenic 45.0%
TCCTTCTTCTGGGTCTCTAT+TGG - chr8_2:2116904-2116923 Msa1227030:CDS 45.0%
ACCAATAGAGACCCAGAAGA+AGG + chr8_2:2116908-2116927 None:intergenic 45.0%
CTGGTGTAGATGAGTGGAAT+AGG - chr8_2:2117065-2117084 Msa1227030:intron 45.0%
! CTTCTGCACCAGCTTTTACT+TGG + chr8_2:2117111-2117130 None:intergenic 45.0%
CCAGTTGATCCTTTCATTGG+GGG + chr8_2:2117200-2117219 None:intergenic 45.0%
TCCTTGATCCACATACGTCA+GGG + chr8_2:2117380-2117399 None:intergenic 45.0%
GGAGAGCTAGTTAACAACGT+TGG - chr8_2:2117397-2117416 Msa1227030:intron 45.0%
!! AAAGTTGCTTTGGGGTCCAA+AGG - chr8_2:2117424-2117443 Msa1227030:intron 45.0%
!! TGCTAAGGCATTGCTTCCTT+TGG + chr8_2:2117443-2117462 None:intergenic 45.0%
!!! TGCAAAGACGGTATCGGTTT+TGG - chr8_2:2117687-2117706 Msa1227030:intron 45.0%
TTGATGCATCATGGCATGCA+AGG + chr8_2:2117898-2117917 None:intergenic 45.0%
! ACTTCTTTTATTAGCGGGGC+TGG - chr8_2:2118046-2118065 Msa1227030:intron 45.0%
CTCCAGACAGCTGCAAATAA+AGG + chr8_2:2118252-2118271 None:intergenic 45.0%
! CTTTATTTGCAGCTGTCTGG+AGG - chr8_2:2118250-2118269 Msa1227030:CDS 45.0%
GATTTGTGCATTCTCATGGG+GGG - chr8_2:2118370-2118389 Msa1227030:intron 45.0%
GGGTCTATGCACAGAAAATG+TGG - chr8_2:2118410-2118429 Msa1227030:CDS 45.0%
AAAGGGAGGGATTACTGAAG+GGG - chr8_2:2118526-2118545 Msa1227030:intron 45.0%
!! AGCAATTGGTTTGGGTGGTT+TGG - chr8_2:2118608-2118627 Msa1227030:CDS 45.0%
!! GCAATTGGTTTGGGTGGTTT+GGG - chr8_2:2118609-2118628 Msa1227030:CDS 45.0%
ACATGTGCACTATTCTGAGC+TGG - chr8_2:2119076-2119095 Msa1227030:intron 45.0%
CAACACCAAATGCTCTTTCC+AGG + chr8_2:2119130-2119149 None:intergenic 45.0%
!! CTGGAAAGAGCATTTGGTGT+TGG - chr8_2:2119128-2119147 Msa1227030:intron 45.0%
GCAGATTCACTAATGGTGAC+AGG + chr8_2:2119224-2119243 None:intergenic 45.0%
GATCCATCCAGTTCCGATTT+AGG - chr8_2:2119248-2119267 Msa1227030:intron 45.0%
ACTTGACCCTAAATCGGAAC+TGG + chr8_2:2119258-2119277 None:intergenic 45.0%
CCCATCTTCAGAGAAAGTTC+TGG + chr8_2:2119306-2119325 None:intergenic 45.0%
! GCTCAAGTTGCAACTTTGCA+AGG - chr8_2:2119445-2119464 Msa1227030:intron 45.0%
AGCAAAACGAGAAGTCAAGC+TGG - chr8_2:2119502-2119521 Msa1227030:intron 45.0%
ACGTGGAAGAGATTCATCCA+TGG - chr8_2:2119538-2119557 Msa1227030:intron 45.0%
TCTCAGCTTGAATATGCTCG+TGG - chr8_2:2119575-2119594 Msa1227030:intron 45.0%
!! ATAGCTTTATTGCCTTGCGG+TGG + chr8_2:2119604-2119623 None:intergenic 45.0%
GTCCTCATTCTTCTTCTCGA+AGG - chr8_2:2119718-2119737 Msa1227030:CDS 45.0%
TGCCTTCGAGAAGAAGAATG+AGG + chr8_2:2119723-2119742 None:intergenic 45.0%
GAAGGAGCAGCAAAAAAAGC+TGG - chr8_2:2119766-2119785 Msa1227030:CDS 45.0%
! TGCAGCTCGATGTTTTCAGA+AGG - chr8_2:2119868-2119887 Msa1227030:intron 45.0%
! TCAGACAGCATTCTGAGAGT+CGG + chr8_2:2119931-2119950 None:intergenic 45.0%
ACTCTCAGAATGCTGTCTGA+TGG - chr8_2:2119931-2119950 Msa1227030:intron 45.0%
TCGAGTTCCTTCAGAGAAGA+TGG - chr8_2:2119982-2120001 Msa1227030:intron 45.0%
AGTTCCTTCAGAGAAGATGG+AGG - chr8_2:2119985-2120004 Msa1227030:intron 45.0%
AGGTTGGAGTTTGCGTTGTT+GGG - chr8_2:2120005-2120024 Msa1227030:intron 45.0%
!! GCGTTGTTGGGTTGGAAAAA+TGG - chr8_2:2120017-2120036 Msa1227030:intron 45.0%
GATTCCATGTGTCCATTACC+TGG + chr8_2:2120070-2120089 None:intergenic 45.0%
GACACATGGAATCCTCCAAA+GGG - chr8_2:2120077-2120096 Msa1227030:intron 45.0%
ACACATGGAATCCTCCAAAG+GGG - chr8_2:2120078-2120097 Msa1227030:intron 45.0%
AGTTATCGATGTCCCTTGCT+CGG - chr8_2:2120134-2120153 Msa1227030:intron 45.0%
!! GCAAGTGAAGAGCATTCAAG+AGG + chr8_2:2120165-2120184 None:intergenic 45.0%
CTTGCCCTCTAATTCTTCTG+TGG - chr8_2:2120219-2120238 Msa1227030:intron 45.0%
AGTAGCAGTAGGTTTAGGTC+AGG - chr8_2:2120321-2120340 Msa1227030:intron 45.0%
TGGGGACACAAAAGAACAGA+AGG - chr8_2:2120354-2120373 Msa1227030:intron 45.0%
GGGGACACAAAAGAACAGAA+GGG - chr8_2:2120355-2120374 Msa1227030:intron 45.0%
GACACAAAAGAACAGAAGGG+AGG - chr8_2:2120358-2120377 Msa1227030:intron 45.0%
CATAATACGAGAGGGAGTTC+TGG + chr8_2:2120402-2120421 None:intergenic 45.0%
AGCATATGTGGAGCTGGAAT+TGG - chr8_2:2120477-2120496 Msa1227030:intron 45.0%
GGAATTGGACAATCCTGTGA+AGG - chr8_2:2120492-2120511 Msa1227030:intron 45.0%
TCACAGTCGTCTTGGCTAAA+TGG + chr8_2:2120682-2120701 None:intergenic 45.0%
GCAATTTCTCACAGTCGTCT+TGG + chr8_2:2120690-2120709 None:intergenic 45.0%
AGAAGAATTCTTCGCAGCAG+TGG + chr8_2:2120755-2120774 None:intergenic 45.0%
TGCTGTAATGTCTGCAATGC+AGG - chr8_2:2120843-2120862 Msa1227030:intron 45.0%
GCTGTAATGTCTGCAATGCA+GGG - chr8_2:2120844-2120863 Msa1227030:intron 45.0%
AGTTTGGCTAGAGCTTCTTG+TGG + chr8_2:2120976-2120995 None:intergenic 45.0%
TTAAACTTACTCCACTGGGC+AGG + chr8_2:2121023-2121042 None:intergenic 45.0%
ATTTAGGGGTCAGTTACAGG+TGG - chr8_2:2121206-2121225 Msa1227030:five_prime_UTR 45.0%
!! GTGCCCACCTTTGAAATTTG+AGG - chr8_2:2121245-2121264 Msa1227030:five_prime_UTR 45.0%
!!! ATTTTCTTTAAAAATTATAA+TGG - chr8_2:2117777-2117796 Msa1227030:intron 5.0%
!!! TTTTCTTTAAAAATTATAAT+GGG - chr8_2:2117778-2117797 Msa1227030:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr8_2:2118557-2118576 Msa1227030:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG - chr8_2:2118558-2118577 Msa1227030:intron 5.0%
CCATAGCGAGATCGAGGAAT+TGG + chr8_2:2114993-2115012 None:intergenic 50.0%
CCAATTCCTCGATCTCGCTA+TGG - chr8_2:2114990-2115009 Msa1227030:three_prime_UTR 50.0%
GAGATTCCATAGCGAGATCG+AGG + chr8_2:2114999-2115018 None:intergenic 50.0%
GTGCGTGCATGCATGTATGT+AGG - chr8_2:2116018-2116037 Msa1227030:CDS 50.0%
TGGCAAATGGCTTCGGTAGA+TGG - chr8_2:2116719-2116738 Msa1227030:CDS 50.0%
GAAATACTGGTGGGGATGAG+TGG - chr8_2:2116987-2117006 Msa1227030:CDS 50.0%
CCCCCAATGAAAGGATCAAC+TGG - chr8_2:2117197-2117216 Msa1227030:intron 50.0%
TCCCTGACGTATGTGGATCA+AGG - chr8_2:2117376-2117395 Msa1227030:intron 50.0%
CTCCTTGATCCACATACGTC+AGG + chr8_2:2117381-2117400 None:intergenic 50.0%
! ACCTGAAAACTGCGGTGCTA+AGG + chr8_2:2117458-2117477 None:intergenic 50.0%
! GTAGAGCCGTTGACTGCTTT+AGG + chr8_2:2117847-2117866 None:intergenic 50.0%
GAGTCTGCAACTATGAGTGC+AGG + chr8_2:2118969-2118988 None:intergenic 50.0%
GACCCTAAATCGGAACTGGA+TGG + chr8_2:2119254-2119273 None:intergenic 50.0%
TAATTGTTCGTCGCTGCGGA+AGG - chr8_2:2119748-2119767 Msa1227030:CDS 50.0%
! AAAGCTGGCCACTTTCTCAC+AGG - chr8_2:2119781-2119800 Msa1227030:CDS 50.0%
TAATTGTGGCGTGCAGCACT+TGG - chr8_2:2119826-2119845 Msa1227030:intron 50.0%
CCAACCTCCATCTTCTCTGA+AGG + chr8_2:2119992-2120011 None:intergenic 50.0%
CCTTCAGAGAAGATGGAGGT+TGG - chr8_2:2119989-2120008 Msa1227030:intron 50.0%
GAGGTTGGAGTTTGCGTTGT+TGG - chr8_2:2120004-2120023 Msa1227030:intron 50.0%
TGGAGTTTGCGTTGTTGGGT+TGG - chr8_2:2120009-2120028 Msa1227030:intron 50.0%
GGACACATGGAATCCTCCAA+AGG - chr8_2:2120076-2120095 Msa1227030:intron 50.0%
TCCTCCAAAGGGGATGATTG+CGG - chr8_2:2120088-2120107 Msa1227030:intron 50.0%
ATTGCGGTCCAGGTGAAGAT+GGG - chr8_2:2120104-2120123 Msa1227030:intron 50.0%
GCCCTCTAATTCTTCTGTGG+AGG - chr8_2:2120222-2120241 Msa1227030:intron 50.0%
! TGTTTTCCTCAAGCCAGAGG+AGG - chr8_2:2120795-2120814 Msa1227030:intron 50.0%
CTCTGGACTGTTGGGCAATA+TGG + chr8_2:2120911-2120930 None:intergenic 50.0%
CATATTGCCCAACAGTCCAG+AGG - chr8_2:2120909-2120928 Msa1227030:intron 50.0%
CACTGGGCAGGAACCTAATA+CGG + chr8_2:2121011-2121030 None:intergenic 50.0%
!! TCGCGGTTGGTGGTTGAAGA+AGG + chr8_2:2115042-2115061 None:intergenic 55.0%
!! GAAAACGCCGTCGTCGACTT+CGG + chr8_2:2115076-2115095 None:intergenic 55.0%
AGCGTCTTTGGCAAGAGCGA+CGG + chr8_2:2115106-2115125 None:intergenic 55.0%
CTGGTGGGGATGAGTGGAAT+AGG - chr8_2:2116993-2117012 Msa1227030:CDS 55.0%
CGAGCTTTCCCTGACGTATG+TGG - chr8_2:2117369-2117388 Msa1227030:intron 55.0%
! GCCTTAGCACCGCAGTTTTC+AGG - chr8_2:2117454-2117473 Msa1227030:intron 55.0%
! TGGTTTGGGTGGTTTGGGTC+TGG - chr8_2:2118614-2118633 Msa1227030:CDS 55.0%
! GGTTTGGGTGGTTTGGGTCT+GGG - chr8_2:2118615-2118634 Msa1227030:CDS 55.0%
! GGTGGTTTGGGTCTGGGAAT+TGG - chr8_2:2118621-2118640 Msa1227030:CDS 55.0%
TAATTTGAAGGAGGGCCCGC+TGG + chr8_2:2119380-2119399 None:intergenic 55.0%
CTGGCGATGAACATTGCACG+TGG - chr8_2:2119521-2119540 Msa1227030:intron 55.0%
TCTACAAGCAGCCCCTCTTG+TGG - chr8_2:2119903-2119922 Msa1227030:intron 55.0%
TGAGAGTCGGAGCCACAAGA+GGG + chr8_2:2119918-2119937 None:intergenic 55.0%
ACCGCAATCATCCCCTTTGG+AGG + chr8_2:2120092-2120111 None:intergenic 55.0%
TGGACCGCAATCATCCCCTT+TGG + chr8_2:2120095-2120114 None:intergenic 55.0%
AAAGGGGATGATTGCGGTCC+AGG - chr8_2:2120094-2120113 Msa1227030:intron 55.0%
GATTGCGGTCCAGGTGAAGA+TGG - chr8_2:2120103-2120122 Msa1227030:intron 55.0%
!! CTCGCATGGCGCTGATTCAA+AGG - chr8_2:2120291-2120310 Msa1227030:intron 55.0%
ACAGAAGGGAGGAGCTAGTC+AGG - chr8_2:2120369-2120388 Msa1227030:intron 55.0%
AGGCCATGTTTATGCGGCAG+AGG - chr8_2:2120576-2120595 Msa1227030:intron 55.0%
GAGCCTCTGCCGCATAAACA+TGG + chr8_2:2120582-2120601 None:intergenic 55.0%
ATTGATGCCCTTGCCTCCTC+TGG + chr8_2:2120811-2120830 None:intergenic 55.0%
AGTGTGGCCTCTGGACTGTT+GGG + chr8_2:2120919-2120938 None:intergenic 55.0%
AAGTGTGGCCTCTGGACTGT+TGG + chr8_2:2120920-2120939 None:intergenic 55.0%
CGTATTAGGTTCCTGCCCAG+TGG - chr8_2:2121009-2121028 Msa1227030:CDS 55.0%
CTAAAACTGAGAGGTGGGCC+AGG + chr8_2:2121088-2121107 None:intergenic 55.0%
GGTCAGTTACAGGTGGAGAC+TGG - chr8_2:2121213-2121232 Msa1227030:five_prime_UTR 55.0%
TGCTCGTGGTAACCACCGCA+AGG - chr8_2:2119589-2119608 Msa1227030:intron 60.0%
GAGAGTCGGAGCCACAAGAG+GGG + chr8_2:2119917-2119936 None:intergenic 60.0%
CTGAGAGTCGGAGCCACAAG+AGG + chr8_2:2119919-2119938 None:intergenic 60.0%
TTCAGCCGCCCATCTTCACC+TGG + chr8_2:2120115-2120134 None:intergenic 60.0%
!! CAAGAGGCACTGCCGAGCAA+GGG + chr8_2:2120149-2120168 None:intergenic 60.0%
!! TCAAGAGGCACTGCCGAGCA+AGG + chr8_2:2120150-2120169 None:intergenic 60.0%
GCAGCTGCAAGTGCCTTCAC+AGG + chr8_2:2120508-2120527 None:intergenic 60.0%
TCCTCAAGCCAGAGGAGGCA+AGG - chr8_2:2120800-2120819 Msa1227030:intron 60.0%
CCTCAAGCCAGAGGAGGCAA+GGG - chr8_2:2120801-2120820 Msa1227030:intron 60.0%
ACTGCGGTAAGTGTGGCCTC+TGG + chr8_2:2120928-2120947 None:intergenic 60.0%
GGAAGGAGAGTCGCGGTTGG+TGG + chr8_2:2115052-2115071 None:intergenic 65.0%
CTTCGGCGGAAGGAGAGTCG+CGG + chr8_2:2115059-2115078 None:intergenic 65.0%
CCTTCCGCCGAAGTCGACGA+CGG - chr8_2:2115066-2115085 Msa1227030:three_prime_UTR 65.0%
!! AACGCCGTCGTCGACTTCGG+CGG + chr8_2:2115073-2115092 None:intergenic 65.0%
! GGCGTGCAGCACTTGGCTTG+TGG - chr8_2:2119833-2119852 Msa1227030:intron 65.0%
GCGGTCCAGGTGAAGATGGG+CGG - chr8_2:2120107-2120126 Msa1227030:intron 65.0%
! CCCTTGCCTCCTCTGGCTTG+AGG + chr8_2:2120804-2120823 None:intergenic 65.0%
GGCGGAAGGAGAGTCGCGGT+TGG + chr8_2:2115055-2115074 None:intergenic 70.0%
!! CCGTCGTCGACTTCGGCGGA+AGG + chr8_2:2115069-2115088 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 2114747 2121400 2114747 ID=Msa1227030;Name=Msa1227030
chr8_2 mRNA 2114747 2121400 2114747 ID=Msa1227030-mRNA-1;Parent=Msa1227030;Name=Msa1227030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=262|1|1|1|1|1|6|344|857
chr8_2 exon 2114747 2117034 2114747 ID=Msa1227030-mRNA-1:exon:506;Parent=Msa1227030-mRNA-1
chr8_2 exon 2118222 2118293 2118222 ID=Msa1227030-mRNA-1:exon:505;Parent=Msa1227030-mRNA-1
chr8_2 exon 2118403 2118489 2118403 ID=Msa1227030-mRNA-1:exon:504;Parent=Msa1227030-mRNA-1
chr8_2 exon 2118607 2118789 2118607 ID=Msa1227030-mRNA-1:exon:503;Parent=Msa1227030-mRNA-1
chr8_2 exon 2119715 2119801 2119715 ID=Msa1227030-mRNA-1:exon:502;Parent=Msa1227030-mRNA-1
chr8_2 exon 2120938 2121400 2120938 ID=Msa1227030-mRNA-1:exon:501;Parent=Msa1227030-mRNA-1
chr8_2 five_prime_UTR 2121139 2121400 2121139 ID=Msa1227030-mRNA-1:five_prime_utr;Parent=Msa1227030-mRNA-1
chr8_2 CDS 2120938 2121138 2120938 ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1
chr8_2 CDS 2119715 2119801 2119715 ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1
chr8_2 CDS 2118607 2118789 2118607 ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1
chr8_2 CDS 2118403 2118489 2118403 ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1
chr8_2 CDS 2118222 2118293 2118222 ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1
chr8_2 CDS 2115091 2117034 2115091 ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1
chr8_2 three_prime_UTR 2114747 2115090 2114747 ID=Msa1227030-mRNA-1:three_prime_utr;Parent=Msa1227030-mRNA-1
Gene Sequence

>Msa1227030

ATGGAATCTCGAGATTTGACATCTTCTTCTCCTTCTTCAACCACCAACCGCGACTCTCCTTCCGCCGAAGTCGACGACGGCGTTTTCGCTCTCACCGTCGCTCTTGCCAAAGACGCTTCTTTGCATTATCAATCTGGCAAGTTCGCTGAATGTGTTGATGTCATGCAACATCTCTTGCTAAACAAACCTAACGATCCAAAGGTACTTCATAATATAGCAATTGCGGAATTCTTCCGAGATGGTTGTTCTGATCCCAAAAAGTTGCTTGAAGTAATTTATAGCATCAAGAGAAAATATGGCGAGCTTTCCCTGACGTATGTGGATCAAGGAGAGCTAGTTAACAACGTTGGAAATAAAGTTGCTTTGGGGTCCAAAGGAAGCAATGCCTTAGCACCGCAGTTTTCAGGTGTAAATAGCACTGACACAATGCATCCAGATGAATTTGACTCTTCCGTCGCAACACTAAATATTGCTATTATCTGGTTCCATCTTCATGACTATGCAAAGACGGTATCGGTTTTGGAACCCCTATTTCAAAAGATTGATCCCATAAAAGAGTCAACGGCTCTACATATTTGTCTTCTGCTGCTTGATGCTAGCCTTGCATGCCATGATGCATCAAAATCAGCTGATGTGTTGACTTACCTGGAAAGAGCATTTGGTGTTGGTAGTGCGAATCAAGTTGACAATGGGAATACAACACAGCAACAATCTGCAAATCTAACGACAAAGTCTGTACCTGTCACCATTAGTGAATCTGCTGCTGATCCATCCAGTTCCGATTTAGGGTCAAGTGCTAATGCATCTGAAAATAATCTATCCAGAACTTTCTCTGAAGATGGGCTTGATTATGCAGCCATGTTTTTGGATATGGGTTCACAAAATTTAACTAGGCCAGCGGGCCCTCCTTCAAATTATCTTTCTAGGGCTTTGGTTGACAGTGTTTCTACTCTTGATTTAAAGCTCAAGTTGCAACTTTGCAAGGTGCAGTTTCTGATTCTTACTAGGAACCTGAAAACAGCAAAACGAGAAGTCAAGCTGGCGATGAACATTGCACGTGGAAGAGATTCATCCATGGCTCTGATTTTGAAATCTCAGCTTGAATATGCTCGTGGTAACCACCGCAAGGCAATAAAGCTATTGATGGCATCAAGTAATAGAACAGACACGGAGTTTTCGAGCATTTTTAACAACAATCTTGGGTGCATTTATTATCAACTTGGGAAATATCAGACGTCCTCATTCTTCTTCTCGAAGGCATTAACTAATTGTTCGTCGCTGCGGAAGGAGCAGCAAAAAAAGCTGGCCACTTTCTCACAGGATAAATCTCTCCTTATAATTTATAATTGTGGCGTGCAGCACTTGGCTTGTGGAAAGCCAATACTTGCAGCTCGATGTTTTCAGAAGGCAAGTTTGGTCTTCTACAAGCAGCCCCTCTTGTGGCTCCGACTCTCAGAATGCTGTCTGATGGCTTTAGAAAAGGGCCTAATCAAATCATGTCGAGTTCCTTCAGAGAAGATGGAGGTTGGAGTTTGCGTTGTTGGGTTGGAAAAATGGAGGCAACTTGTTGTGGAAGATCAAATTCCAGGTAATGGACACATGGAATCCTCCAAAGGGGATGATTGCGGTCCAGGTGAAGATGGGCGGCTGAAGTTATCGATGTCCCTTGCTCGGCAGTGCCTCTTGAATGCTCTTCACTTGCTAGACTCCTACAGTACAAATCGTTTGAAGTCTGGCTTGCCCTCTAATTCTTCTGTGGAGGATGATACAAGTGAAATGTTGCCTTCAAAGAATTTAAGTCGTAAAAACTCGCATGGCGCTGATTCAAAGGCATTTTCAGTAGCAGTAGGTTTAGGTCAGGTAAATTCAAATGGGGACACAAAAGAACAGAAGGGAGGAGCTAGTCAGGAACTCTTCCAGAACTCCCTCTCGTATTATGAAGATGTCTGTAGAAGAGATAATCAATTGGTCAAGCAAGCTGTTCTAGCTAATTTAGCATATGTGGAGCTGGAATTGGACAATCCTGTGAAGGCACTTGCAGCTGCAAAATCTCTTTTTGAACTTCCAGAATGTTCCAGAATTTACATCTTTCTAGGCCATGTTTATGCGGCAGAGGCTCTTTGCTTGCTGAATAGACCAAAGGAAGCTGCTGATTACTTATCATATTATTTGTCTGGAGGAAACAGTGTTGAATTGCCATTTAGCCAAGACGACTGTGAGAAATTGCAAGTAGAGAGGACTGTTGAATTTGAAGACGTAAATGGAGGATCCACTGCTGCGAAGAATTCTTCTCTTCAGGATCCTCAAAGTATTGTTTTCCTCAAGCCAGAGGAGGCAAGGGCATCAATTTATGCTAACTTTGCTGTAATGTCTGCAATGCAGGGTGAACTTGAGAAAGCCAATATATTGGTTACACAGGCATTGTCCATATTGCCCAACAGTCCAGAGGCCACACTTACCGCAGTTTATGTTGATCTCTTGCTTGGTAAGCCACAAGAAGCTCTAGCCAAACTAAAAAGTTGTAGCCGTATTAGGTTCCTGCCCAGTGGAGTAAGTTTAAATAAATCTTCATGA

Protein sequence

>Msa1227030

MESRDLTSSSPSSTTNRDSPSAEVDDGVFALTVALAKDASLHYQSGKFAECVDVMQHLLLNKPNDPKVLHNIAIAEFFRDGCSDPKKLLEVIYSIKRKYGELSLTYVDQGELVNNVGNKVALGSKGSNALAPQFSGVNSTDTMHPDEFDSSVATLNIAIIWFHLHDYAKTVSVLEPLFQKIDPIKESTALHICLLLLDASLACHDASKSADVLTYLERAFGVGSANQVDNGNTTQQQSANLTTKSVPVTISESAADPSSSDLGSSANASENNLSRTFSEDGLDYAAMFLDMGSQNLTRPAGPPSNYLSRALVDSVSTLDLKLKLQLCKVQFLILTRNLKTAKREVKLAMNIARGRDSSMALILKSQLEYARGNHRKAIKLLMASSNRTDTEFSSIFNNNLGCIYYQLGKYQTSSFFFSKALTNCSSLRKEQQKKLATFSQDKSLLIIYNCGVQHLACGKPILAARCFQKASLVFYKQPLLWLRLSECCLMALEKGLIKSCRVPSEKMEVGVCVVGLEKWRQLVVEDQIPGNGHMESSKGDDCGPGEDGRLKLSMSLARQCLLNALHLLDSYSTNRLKSGLPSNSSVEDDTSEMLPSKNLSRKNSHGADSKAFSVAVGLGQVNSNGDTKEQKGGASQELFQNSLSYYEDVCRRDNQLVKQAVLANLAYVELELDNPVKALAAAKSLFELPECSRIYIFLGHVYAAEALCLLNRPKEAADYLSYYLSGGNSVELPFSQDDCEKLQVERTVEFEDVNGGSTAAKNSSLQDPQSIVFLKPEEARASIYANFAVMSAMQGELEKANILVTQALSILPNSPEATLTAVYVDLLLGKPQEALAKLKSCSRIRFLPSGVSLNKSS*