Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1227030 | AES91602.2 | 97.783 | 857 | 19 | 0 | 1 | 857 | 1 | 857 | 0.0 | 1716 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1227030 | sp|Q8BH15|CNO10_MOUSE | 26.177 | 871 | 456 | 27 | 6 | 849 | 1 | 711 | 3.83e-53 | 201 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1227030 | G7JFC6 | 97.783 | 857 | 19 | 0 | 1 | 857 | 1 | 857 | 0.0 | 1716 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1222670 | Msa1227030 | 0.899849 | 1.317856e-77 | -8.615850e-47 |
Msa0485430 | Msa1227030 | 0.958545 | 1.807787e-116 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1227030 | MtrunA17_Chr4g0064341 | 96.409 | 724 | 26 | 0 | 1 | 724 | 1 | 724 | 0.0 | 1437 |
Msa1227030 | MtrunA17_Chr4g0064351 | 100.000 | 65 | 0 | 0 | 793 | 857 | 1 | 65 | 3.65e-36 | 130 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1227030 | AT5G35430.1 | 46.970 | 858 | 381 | 13 | 1 | 856 | 1 | 786 | 0.0 | 698 |
Find 225 sgRNAs with CRISPR-Local
Find 465 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCTTCAAATTATCTTTCT+AGG | 0.226319 | 8_2:-2116738 | Msa1227030:CDS |
GATCCATCCAGTTCCGATTT+AGG | 0.229483 | 8_2:-2116877 | Msa1227030:CDS |
TCACAGTCGTCTTGGCTAAA+TGG | 0.235042 | 8_2:+2115446 | None:intergenic |
AACATATATAAGTTCAATTC+AGG | 0.235092 | 8_2:-2114983 | Msa1227030:three_prime_UTR |
CAAATTTAGGGGTCAGTTAC+AGG | 0.246780 | 8_2:-2114922 | Msa1227030:three_prime_UTR |
TCCAGAATTTACATCTTTCT+AGG | 0.251642 | 8_2:-2115569 | Msa1227030:CDS |
ATCGAAGGTTGAAAGGGTTT+TGG | 0.256233 | 8_2:+2121167 | None:intergenic |
GTTGAATTTGAAGACGTAAA+TGG | 0.270621 | 8_2:-2115401 | Msa1227030:CDS |
ATCCATCCAGTTCCGATTTA+GGG | 0.273841 | 8_2:-2116876 | Msa1227030:CDS |
TGCAAAGACGGTATCGGTTT+TGG | 0.280040 | 8_2:-2118438 | Msa1227030:CDS |
CTCTGGACTGTTGGGCAATA+TGG | 0.288023 | 8_2:+2115217 | None:intergenic |
AAATTATCTTTCTAGGGCTT+TGG | 0.297084 | 8_2:-2116731 | Msa1227030:CDS |
CGCCACAATTATAAATTATA+AGG | 0.301160 | 8_2:+2116311 | None:intergenic |
CGTTGGAAATAAAGTTGCTT+TGG | 0.307451 | 8_2:-2118711 | Msa1227030:CDS |
TGCGAAGAATTCTTCTCTTC+AGG | 0.309254 | 8_2:-2115366 | Msa1227030:CDS |
TGCTAAGGCATTGCTTCCTT+TGG | 0.311529 | 8_2:+2118685 | None:intergenic |
GTTGGAAATAAAGTTGCTTT+GGG | 0.320959 | 8_2:-2118710 | Msa1227030:CDS |
GAGTTTATTCAGAGAAAATA+TGG | 0.324465 | 8_2:-2118779 | Msa1227030:intron |
TACTTATCATATTATTTGTC+TGG | 0.338404 | 8_2:-2115488 | Msa1227030:CDS |
ATAATGCAAAGAAGCGTCTT+TGG | 0.339590 | 8_2:+2121010 | None:intergenic |
ATGTAAATTCTGGAACATTC+TGG | 0.345616 | 8_2:+2115578 | None:intergenic |
GAGGTTGGAGTTTGCGTTGT+TGG | 0.355655 | 8_2:-2116121 | Msa1227030:CDS |
GCCTAGAAAGATGTAAATTC+TGG | 0.359052 | 8_2:+2115568 | None:intergenic |
TGCTGTAATGTCTGCAATGC+AGG | 0.360550 | 8_2:-2115282 | Msa1227030:CDS |
AGCATATGTGGAGCTGGAAT+TGG | 0.364524 | 8_2:-2115648 | Msa1227030:CDS |
ATTGATGCCCTTGCCTCCTC+TGG | 0.366433 | 8_2:+2115317 | None:intergenic |
ATTAAGATTAAAACATGGTT+TGG | 0.368682 | 8_2:+2121272 | None:intergenic |
AACCTCTCTAGGCTATTATC+TGG | 0.370844 | 8_2:-2118478 | Msa1227030:intron |
GCTTCTTTGCATTATCAATC+TGG | 0.377573 | 8_2:-2121002 | Msa1227030:CDS |
GTTGTGGAAGATCAAATTCC+AGG | 0.383285 | 8_2:-2116076 | Msa1227030:CDS |
TTACGACTTAAATTCTTTGA+AGG | 0.383757 | 8_2:+2115860 | None:intergenic |
CAACACCAAATGCTCTTTCC+AGG | 0.384211 | 8_2:+2116998 | None:intergenic |
TGCCTGTGTAACCAATATAT+TGG | 0.385512 | 8_2:+2115244 | None:intergenic |
GATTAAAACATGGTTTGGTT+TGG | 0.387190 | 8_2:+2121277 | None:intergenic |
CCATAGCGAGATCGAGGAAT+TGG | 0.392164 | 8_2:+2121135 | None:intergenic |
CATAATACGAGAGGGAGTTC+TGG | 0.398213 | 8_2:+2115726 | None:intergenic |
AAAGGGGATGATTGCGGTCC+AGG | 0.399591 | 8_2:-2116031 | Msa1227030:CDS |
ACAGAAGGGAGGAGCTAGTC+AGG | 0.399864 | 8_2:-2115756 | Msa1227030:CDS |
TTGAATACCTTTGGATCGTT+AGG | 0.400570 | 8_2:+2120930 | None:intergenic |
TCCTTCAAATTATCTTTCTA+GGG | 0.402240 | 8_2:-2116737 | Msa1227030:CDS |
GAACTCGACATGATTTGATT+AGG | 0.405082 | 8_2:+2116158 | None:intergenic |
ACTTACCTGGAAAGAGCATT+TGG | 0.407981 | 8_2:-2117003 | Msa1227030:CDS |
TTAGGTCAGGTAAATTCAAA+TGG | 0.408410 | 8_2:-2115791 | Msa1227030:CDS |
CTGTCTGATGGCTTTAGAAA+AGG | 0.409270 | 8_2:-2116182 | Msa1227030:CDS |
AGTACAAATCGTTTGAAGTC+TGG | 0.409320 | 8_2:-2115929 | Msa1227030:CDS |
GTGCCCACCTTTGAAATTTG+AGG | 0.411848 | 8_2:-2114880 | Msa1227030:three_prime_UTR |
ACTTGAGAAAGCCAATATAT+TGG | 0.412594 | 8_2:-2115255 | Msa1227030:CDS |
TTTGAGGTGTAGATCTGATT+CGG | 0.416437 | 8_2:-2114864 | Msa1227030:three_prime_UTR |
CCCATCTTCAGAGAAAGTTC+TGG | 0.420092 | 8_2:+2116822 | None:intergenic |
ATCCTCCACAGAAGAATTAG+AGG | 0.422192 | 8_2:+2115901 | None:intergenic |
CTCCTTGATCCACATACGTC+AGG | 0.423689 | 8_2:+2118747 | None:intergenic |
TCTAGCTAATTTAGCATATG+TGG | 0.425924 | 8_2:-2115660 | Msa1227030:CDS |
TCCAGAACTTTCTCTGAAGA+TGG | 0.426206 | 8_2:-2116823 | Msa1227030:CDS |
GTTTATGTTGATCTCTTGCT+TGG | 0.437855 | 8_2:-2115179 | Msa1227030:CDS |
GGGTGCATTTATTATCAACT+TGG | 0.438451 | 8_2:-2116442 | Msa1227030:CDS |
AGGTTGGAGTTTGCGTTGTT+GGG | 0.438726 | 8_2:-2116120 | Msa1227030:CDS |
TAGGTCAGGTAAATTCAAAT+GGG | 0.442834 | 8_2:-2115790 | Msa1227030:CDS |
AGTAGCAGTAGGTTTAGGTC+AGG | 0.443104 | 8_2:-2115804 | Msa1227030:CDS |
TTTATTTAAACTTACTCCAC+TGG | 0.446826 | 8_2:+2115100 | None:intergenic |
AAGTAATCAGCAGCTTCCTT+TGG | 0.448866 | 8_2:+2115506 | None:intergenic |
CAAGGCAATAAAGCTATTGA+TGG | 0.449483 | 8_2:-2116518 | Msa1227030:CDS |
TGCAGTTTCTGATTCTTACT+AGG | 0.451462 | 8_2:-2116657 | Msa1227030:CDS |
GATTGCGGTCCAGGTGAAGA+TGG | 0.452924 | 8_2:-2116022 | Msa1227030:CDS |
ACGGAAGAGTCAAATTCATC+TGG | 0.454205 | 8_2:+2118623 | None:intergenic |
AGTGTGGCCTCTGGACTGTT+GGG | 0.456959 | 8_2:+2115209 | None:intergenic |
AGAGAGAAGAAAAGAAGAGA+TGG | 0.459261 | 8_2:+2121345 | None:intergenic |
ATTAGCACTTGACCCTAAAT+CGG | 0.466599 | 8_2:+2116864 | None:intergenic |
CTCGCATGGCGCTGATTCAA+AGG | 0.471008 | 8_2:-2115834 | Msa1227030:CDS |
CTCCTTATAATTTATAATTG+TGG | 0.472860 | 8_2:-2116313 | Msa1227030:CDS |
TAATTGTGGCGTGCAGCACT+TGG | 0.477869 | 8_2:-2116299 | Msa1227030:CDS |
CACTGGGCAGGAACCTAATA+CGG | 0.480274 | 8_2:+2115117 | None:intergenic |
GAAGATCAAATTCCAGGTAA+TGG | 0.480624 | 8_2:-2116070 | Msa1227030:CDS |
TGGACCGCAATCATCCCCTT+TGG | 0.482289 | 8_2:+2116033 | None:intergenic |
TTGAGGAAAACAATACTTTG+AGG | 0.488148 | 8_2:+2115341 | None:intergenic |
TGGAGTTTGCGTTGTTGGGT+TGG | 0.488841 | 8_2:-2116116 | Msa1227030:CDS |
CCCTTGCCTCCTCTGGCTTG+AGG | 0.491163 | 8_2:+2115324 | None:intergenic |
TACAGAAATCGAAGGTTGAA+AGG | 0.491648 | 8_2:+2121160 | None:intergenic |
GCAATTTCTCACAGTCGTCT+TGG | 0.492027 | 8_2:+2115438 | None:intergenic |
GATTCCATGTGTCCATTACC+TGG | 0.493805 | 8_2:+2116058 | None:intergenic |
ACCTGAAAACTGCGGTGCTA+AGG | 0.495151 | 8_2:+2118670 | None:intergenic |
CTAAAACTGAGAGGTGGGCC+AGG | 0.495933 | 8_2:+2115040 | None:intergenic |
ACTTGACCCTAAATCGGAAC+TGG | 0.498812 | 8_2:+2116870 | None:intergenic |
TCCTCAAGCCAGAGGAGGCA+AGG | 0.500133 | 8_2:-2115325 | Msa1227030:CDS |
GGTGCATTTATTATCAACTT+GGG | 0.500962 | 8_2:-2116441 | Msa1227030:CDS |
ACCGCAATCATCCCCTTTGG+AGG | 0.501986 | 8_2:+2116036 | None:intergenic |
TCGAGTTCCTTCAGAGAAGA+TGG | 0.504101 | 8_2:-2116143 | Msa1227030:CDS |
GAGAGAAGAAAAGAAGAGAT+GGG | 0.504253 | 8_2:+2121346 | None:intergenic |
GCAGCTGCAAGTGCCTTCAC+AGG | 0.506606 | 8_2:+2115620 | None:intergenic |
AAGTGTGGCCTCTGGACTGT+TGG | 0.507510 | 8_2:+2115208 | None:intergenic |
GCCCTAGAAAGATAATTTGA+AGG | 0.508022 | 8_2:+2116736 | None:intergenic |
TGTCTGATGGCTTTAGAAAA+GGG | 0.508915 | 8_2:-2116181 | Msa1227030:CDS |
TAATTGTTCGTCGCTGCGGA+AGG | 0.510870 | 8_2:-2116377 | Msa1227030:CDS |
TATATATGTTACAAATGCTA+TGG | 0.512096 | 8_2:+2114996 | None:intergenic |
AGAAGACCTAAAATTGAATG+AGG | 0.513084 | 8_2:+2121206 | None:intergenic |
GACACATGGAATCCTCCAAA+GGG | 0.513457 | 8_2:-2116048 | Msa1227030:CDS |
AAAGATTGATCCCATAAAAG+AGG | 0.514143 | 8_2:-2118402 | Msa1227030:intron |
AAACATCGAGCTGCAAGTAT+TGG | 0.514563 | 8_2:+2116265 | None:intergenic |
CGAGCTTTCCCTGACGTATG+TGG | 0.514974 | 8_2:-2118756 | Msa1227030:CDS |
TGAAGTAATTTATAGCATCA+AGG | 0.516031 | 8_2:-2119714 | Msa1227030:intron |
TCAAGAGGCACTGCCGAGCA+AGG | 0.516316 | 8_2:+2115978 | None:intergenic |
GTGCGAATCAAGTTGACAAT+GGG | 0.516578 | 8_2:-2116972 | Msa1227030:CDS |
GCCCTCTAATTCTTCTGTGG+AGG | 0.516726 | 8_2:-2115903 | Msa1227030:CDS |
ACTGCGGTAAGTGTGGCCTC+TGG | 0.518484 | 8_2:+2115200 | None:intergenic |
CCAGAACTTTCTCTGAAGAT+GGG | 0.519413 | 8_2:-2116822 | Msa1227030:CDS |
TCGCGGTTGGTGGTTGAAGA+AGG | 0.519971 | 8_2:+2121086 | None:intergenic |
GGAAGGAGAGTCGCGGTTGG+TGG | 0.521129 | 8_2:+2121076 | None:intergenic |
CTGTAGAAGAGATAATCAAT+TGG | 0.521353 | 8_2:-2115696 | Msa1227030:CDS |
TTAAACTTACTCCACTGGGC+AGG | 0.522122 | 8_2:+2115105 | None:intergenic |
ACAGAAATCGAAGGTTGAAA+GGG | 0.523361 | 8_2:+2121161 | None:intergenic |
AGATTTATCCTGTGAGAAAG+TGG | 0.526008 | 8_2:+2116336 | None:intergenic |
GAAAACGCCGTCGTCGACTT+CGG | 0.526520 | 8_2:+2121052 | None:intergenic |
TACAATATTTAGTGTTGCGA+CGG | 0.531544 | 8_2:+2118604 | None:intergenic |
TGGGTTCACAAAATTTAACT+AGG | 0.531972 | 8_2:-2116771 | Msa1227030:CDS |
CCTTCAGAGAAGATGGAGGT+TGG | 0.536210 | 8_2:-2116136 | Msa1227030:CDS |
TAATTTGAAGGAGGGCCCGC+TGG | 0.537167 | 8_2:+2116748 | None:intergenic |
AGGCCATGTTTATGCGGCAG+AGG | 0.537177 | 8_2:-2115549 | Msa1227030:CDS |
TGACTATGCAAAGACGGTAT+CGG | 0.537690 | 8_2:-2118444 | Msa1227030:CDS |
GGTCAGTTACAGGTGGAGAC+TGG | 0.541629 | 8_2:-2114912 | Msa1227030:three_prime_UTR |
GCTCAAGTTGCAACTTTGCA+AGG | 0.542130 | 8_2:-2116680 | Msa1227030:CDS |
TTAGGATGTGTTGACTTACC+TGG | 0.542332 | 8_2:-2117016 | Msa1227030:intron |
ACAAAATTTAACTAGGCCAG+CGG | 0.543822 | 8_2:-2116764 | Msa1227030:CDS |
CTGGAAAGAGCATTTGGTGT+TGG | 0.545410 | 8_2:-2116997 | Msa1227030:CDS |
CATGGTTATATCATTGTGCC+TGG | 0.547330 | 8_2:-2115058 | Msa1227030:three_prime_UTR |
AAAGTTGCTTTGGGGTCCAA+AGG | 0.549173 | 8_2:-2118701 | Msa1227030:CDS |
CTTGCCCTCTAATTCTTCTG+TGG | 0.550070 | 8_2:-2115906 | Msa1227030:CDS |
TGGGGACACAAAAGAACAGA+AGG | 0.552001 | 8_2:-2115771 | Msa1227030:CDS |
TAATTTAGCATATGTGGAGC+TGG | 0.553226 | 8_2:-2115654 | Msa1227030:CDS |
TAACTAATTGTTCGTCGCTG+CGG | 0.554213 | 8_2:-2116381 | Msa1227030:CDS |
TTATCATATTATTTGTCTGG+AGG | 0.555300 | 8_2:-2115485 | Msa1227030:CDS |
CCTCAAGCCAGAGGAGGCAA+GGG | 0.555731 | 8_2:-2115324 | Msa1227030:CDS |
TCTACAAGCAGCCCCTCTTG+TGG | 0.557200 | 8_2:-2116222 | Msa1227030:CDS |
ACATATATAAGTTCAATTCA+GGG | 0.557754 | 8_2:-2114982 | Msa1227030:three_prime_UTR |
ATCAGCAGCAGATTCACTAA+TGG | 0.559636 | 8_2:+2116897 | None:intergenic |
GTCCTCATTCTTCTTCTCGA+AGG | 0.559829 | 8_2:-2116407 | Msa1227030:CDS |
TCCCTGACGTATGTGGATCA+AGG | 0.561251 | 8_2:-2118749 | Msa1227030:CDS |
ATTGCGGTCCAGGTGAAGAT+GGG | 0.563635 | 8_2:-2116021 | Msa1227030:CDS |
TTCAGCCGCCCATCTTCACC+TGG | 0.564293 | 8_2:+2116013 | None:intergenic |
TTGATGCATCATGGCATGCA+AGG | 0.565171 | 8_2:+2118230 | None:intergenic |
AGCCAATATATTGGTTACAC+AGG | 0.567649 | 8_2:-2115246 | Msa1227030:CDS |
CTTCAAACGATTTGTACTGT+AGG | 0.570669 | 8_2:+2115934 | None:intergenic |
ATTGCGGAATTCTTCCGAGA+TGG | 0.572442 | 8_2:-2119761 | Msa1227030:CDS |
ACTCTCAGAATGCTGTCTGA+TGG | 0.572565 | 8_2:-2116194 | Msa1227030:CDS |
CCAATTCCTCGATCTCGCTA+TGG | 0.573008 | 8_2:-2121135 | Msa1227030:exon |
CAAAATTTAACTAGGCCAGC+GGG | 0.573602 | 8_2:-2116763 | Msa1227030:CDS |
AGTTATCGATGTCCCTTGCT+CGG | 0.573739 | 8_2:-2115991 | Msa1227030:CDS |
TCTTTGCATAGTCATGAAGA+TGG | 0.574380 | 8_2:+2118453 | None:intergenic |
AACATAAACTGCGGTAAGTG+TGG | 0.574544 | 8_2:+2115193 | None:intergenic |
GAGCCTCTGCCGCATAAACA+TGG | 0.574948 | 8_2:+2115546 | None:intergenic |
CCGTCGTCGACTTCGGCGGA+AGG | 0.575192 | 8_2:+2121059 | None:intergenic |
TATGTTACAAATGCTATGGA+AGG | 0.577330 | 8_2:+2115000 | None:intergenic |
AAAGCTGGCCACTTTCTCAC+AGG | 0.580528 | 8_2:-2116344 | Msa1227030:CDS |
TACACCTCAAATTTCAAAGG+TGG | 0.581359 | 8_2:+2114876 | None:intergenic |
AGCAAAACGAGAAGTCAAGC+TGG | 0.582165 | 8_2:-2116623 | Msa1227030:CDS |
CTTCATGAGTGTTGTATGCA+TGG | 0.582593 | 8_2:-2115076 | Msa1227030:exon |
GCAGATTCACTAATGGTGAC+AGG | 0.584111 | 8_2:+2116904 | None:intergenic |
CCAACCTCCATCTTCTCTGA+AGG | 0.584845 | 8_2:+2116136 | None:intergenic |
AGCGTCTTTGGCAAGAGCGA+CGG | 0.587657 | 8_2:+2121022 | None:intergenic |
AGATTTCAAAATCAGAGCCA+TGG | 0.588061 | 8_2:+2116570 | None:intergenic |
GACCCTAAATCGGAACTGGA+TGG | 0.589437 | 8_2:+2116874 | None:intergenic |
TTGCTTGCTGAATAGACCAA+AGG | 0.592584 | 8_2:-2115522 | Msa1227030:CDS |
ATCTACACCTCAAATTTCAA+AGG | 0.594253 | 8_2:+2114873 | None:intergenic |
AGAAGAATTCTTCGCAGCAG+TGG | 0.594658 | 8_2:+2115373 | None:intergenic |
AAAATGGAGGCAACTTGTTG+TGG | 0.594821 | 8_2:-2116092 | Msa1227030:CDS |
GCTAACTAAAACTGAGAGGT+GGG | 0.595541 | 8_2:+2115035 | None:intergenic |
GAAGACCTAAAATTGAATGA+GGG | 0.595870 | 8_2:+2121207 | None:intergenic |
GGCGGAAGGAGAGTCGCGGT+TGG | 0.596914 | 8_2:+2121073 | None:intergenic |
TCAATAGCTTTATTGCCTTG+CGG | 0.597488 | 8_2:+2116521 | None:intergenic |
ACTTCATAATATAGCAATTG+CGG | 0.598887 | 8_2:-2119777 | Msa1227030:CDS |
TGGGATCAGAACAACCATCT+CGG | 0.604284 | 8_2:+2119747 | None:intergenic |
GCAAGTGAAGAGCATTCAAG+AGG | 0.607592 | 8_2:+2115963 | None:intergenic |
GCGGTCCAGGTGAAGATGGG+CGG | 0.607734 | 8_2:-2116018 | Msa1227030:CDS |
AGTTTGGCTAGAGCTTCTTG+TGG | 0.608455 | 8_2:+2115152 | None:intergenic |
CAAGAGGCACTGCCGAGCAA+GGG | 0.610077 | 8_2:+2115979 | None:intergenic |
TTATTTAAACTTACTCCACT+GGG | 0.610575 | 8_2:+2115101 | None:intergenic |
TTTATAATTCTCAAATTTAG+GGG | 0.612048 | 8_2:-2114933 | Msa1227030:three_prime_UTR |
TAGAAAGATAATTTGAAGGA+GGG | 0.612465 | 8_2:+2116740 | None:intergenic |
CTGAGAGTCGGAGCCACAAG+AGG | 0.612920 | 8_2:+2116209 | None:intergenic |
AGTGCGAATCAAGTTGACAA+TGG | 0.613308 | 8_2:-2116973 | Msa1227030:CDS |
TGAGAGTCGGAGCCACAAGA+GGG | 0.614527 | 8_2:+2116210 | None:intergenic |
TGCTAACTAAAACTGAGAGG+TGG | 0.615670 | 8_2:+2115034 | None:intergenic |
GGAGAGCTAGTTAACAACGT+TGG | 0.616643 | 8_2:-2118728 | Msa1227030:CDS |
GTGAGAAATTGCAAGTAGAG+AGG | 0.617140 | 8_2:-2115427 | Msa1227030:CDS |
CTTTCTAGGCCATGTTTATG+CGG | 0.617146 | 8_2:-2115555 | Msa1227030:CDS |
TCCTTGATCCACATACGTCA+GGG | 0.618812 | 8_2:+2118748 | None:intergenic |
TCTTCATGACTATGCAAAGA+CGG | 0.619165 | 8_2:-2118450 | Msa1227030:CDS |
CTAGAAAGATAATTTGAAGG+AGG | 0.619288 | 8_2:+2116739 | None:intergenic |
AACGCCGTCGTCGACTTCGG+CGG | 0.619375 | 8_2:+2121055 | None:intergenic |
GGACACATGGAATCCTCCAA+AGG | 0.619856 | 8_2:-2116049 | Msa1227030:CDS |
GGCGTGCAGCACTTGGCTTG+TGG | 0.620925 | 8_2:-2116292 | Msa1227030:CDS |
GACATCTTCATAATACGAGA+GGG | 0.621685 | 8_2:+2115718 | None:intergenic |
TCAGACAGCATTCTGAGAGT+CGG | 0.626085 | 8_2:+2116197 | None:intergenic |
AGTTAATTAAGATTAAAACA+TGG | 0.626556 | 8_2:+2121267 | None:intergenic |
GCTGTAATGTCTGCAATGCA+GGG | 0.627280 | 8_2:-2115281 | Msa1227030:CDS |
AAACAAACCTAACGATCCAA+AGG | 0.627463 | 8_2:-2120937 | Msa1227030:intron |
ACACCTCAAATTTCAAAGGT+GGG | 0.628313 | 8_2:+2114877 | None:intergenic |
ATTTAGGGGTCAGTTACAGG+TGG | 0.628386 | 8_2:-2114919 | Msa1227030:three_prime_UTR |
GGAATTGGACAATCCTGTGA+AGG | 0.628752 | 8_2:-2115633 | Msa1227030:CDS |
TCCTCCAAAGGGGATGATTG+CGG | 0.629680 | 8_2:-2116037 | Msa1227030:CDS |
GAGATTCCATAGCGAGATCG+AGG | 0.630763 | 8_2:+2121129 | None:intergenic |
TGCCTTCGAGAAGAAGAATG+AGG | 0.637009 | 8_2:+2116405 | None:intergenic |
TGCTCGTGGTAACCACCGCA+AGG | 0.638172 | 8_2:-2116536 | Msa1227030:CDS |
AATTCCAGGTAATGGACACA+TGG | 0.638460 | 8_2:-2116062 | Msa1227030:CDS |
AGGTCAGGTAAATTCAAATG+GGG | 0.643683 | 8_2:-2115789 | Msa1227030:CDS |
ATAGCTTTATTGCCTTGCGG+TGG | 0.644670 | 8_2:+2116524 | None:intergenic |
AATTGGAATACAGAAATCGA+AGG | 0.647423 | 8_2:+2121152 | None:intergenic |
TCTCAGCTTGAATATGCTCG+TGG | 0.650885 | 8_2:-2116550 | Msa1227030:CDS |
GAATTTGAAGACGTAAATGG+AGG | 0.652933 | 8_2:-2115398 | Msa1227030:CDS |
CTGGCGATGAACATTGCACG+TGG | 0.654787 | 8_2:-2116604 | Msa1227030:CDS |
TCCTCCACAGAAGAATTAGA+GGG | 0.662228 | 8_2:+2115902 | None:intergenic |
CCTTCCGCCGAAGTCGACGA+CGG | 0.663917 | 8_2:-2121059 | Msa1227030:CDS |
AGACATCTTCATAATACGAG+AGG | 0.664656 | 8_2:+2115717 | None:intergenic |
TTGGAAATAAAGTTGCTTTG+GGG | 0.665560 | 8_2:-2118709 | Msa1227030:CDS |
ACGTGGAAGAGATTCATCCA+TGG | 0.672916 | 8_2:-2116587 | Msa1227030:CDS |
CATATTGCCCAACAGTCCAG+AGG | 0.674235 | 8_2:-2115216 | Msa1227030:CDS |
CTTCGGCGGAAGGAGAGTCG+CGG | 0.674763 | 8_2:+2121069 | None:intergenic |
ATCAAGTAATAGAACAGACA+CGG | 0.680364 | 8_2:-2116494 | Msa1227030:CDS |
CGTATTAGGTTCCTGCCCAG+TGG | 0.693267 | 8_2:-2115116 | Msa1227030:CDS |
GACACAAAAGAACAGAAGGG+AGG | 0.694944 | 8_2:-2115767 | Msa1227030:CDS |
ACCTGCTAACTAAAACTGAG+AGG | 0.697545 | 8_2:+2115031 | None:intergenic |
GAGAGTCGGAGCCACAAGAG+GGG | 0.698061 | 8_2:+2116211 | None:intergenic |
AGTTCCTTCAGAGAAGATGG+AGG | 0.705068 | 8_2:-2116140 | Msa1227030:CDS |
GGGGACACAAAAGAACAGAA+GGG | 0.706066 | 8_2:-2115770 | Msa1227030:CDS |
CAAGAGATCAACATAAACTG+CGG | 0.708853 | 8_2:+2115184 | None:intergenic |
ACACATGGAATCCTCCAAAG+GGG | 0.737500 | 8_2:-2116047 | Msa1227030:CDS |
CTATTTACACCTGAAAACTG+CGG | 0.737778 | 8_2:+2118662 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTAGAATTTTAAATGTTT+TGG | - | chr8_2:2115875-2115894 | Msa1227030:CDS | 10.0% |
!!! | TTTAGAATTTTAAATGTTTT+GGG | - | chr8_2:2115876-2115895 | Msa1227030:CDS | 10.0% |
!!! | TTTCTTTAAAAATTATAATG+GGG | - | chr8_2:2117779-2117798 | Msa1227030:intron | 10.0% |
!!! | TTTTTTTTTTTTTTTTTGAG+GGG | - | chr8_2:2118559-2118578 | Msa1227030:intron | 10.0% |
!!! | TTTTTATAATTCTCAAATTT+AGG | - | chr8_2:2121190-2121209 | Msa1227030:five_prime_UTR | 10.0% |
!!! | TTTTATAATTCTCAAATTTA+GGG | - | chr8_2:2121191-2121210 | Msa1227030:five_prime_UTR | 10.0% |
!! | AGTTAATTAAGATTAAAACA+TGG | + | chr8_2:2114861-2114880 | None:intergenic | 15.0% |
!!! | GAAAGAAAATTTTATTAGAT+CGG | - | chr8_2:2115566-2115585 | Msa1227030:CDS | 15.0% |
!!! | ACTTATTCATGTAAATATTT+TGG | - | chr8_2:2116677-2116696 | Msa1227030:CDS | 15.0% |
!!! | CTTATTCATGTAAATATTTT+GGG | - | chr8_2:2116678-2116697 | Msa1227030:CDS | 15.0% |
!!! | TTATTCATGTAAATATTTTG+GGG | - | chr8_2:2116679-2116698 | Msa1227030:CDS | 15.0% |
!! | GAAAGATAATATTATAAGTT+AGG | - | chr8_2:2117037-2117056 | Msa1227030:intron | 15.0% |
!! | AGTTAATTGAAATTGATATA+AGG | + | chr8_2:2117560-2117579 | None:intergenic | 15.0% |
!!! | TTCTTTAAAAATTATAATGG+GGG | - | chr8_2:2117780-2117799 | Msa1227030:intron | 15.0% |
!!! | TTTATTTTTTAATGATTGCA+AGG | - | chr8_2:2117959-2117978 | Msa1227030:intron | 15.0% |
!! | TACAATTAGAGAATTTAAAA+AGG | + | chr8_2:2119057-2119076 | None:intergenic | 15.0% |
!! | TTTATAATTCTCAAATTTAG+GGG | - | chr8_2:2121192-2121211 | Msa1227030:five_prime_UTR | 15.0% |
!! | ATTAAGATTAAAACATGGTT+TGG | + | chr8_2:2114856-2114875 | None:intergenic | 20.0% |
!!! | TTGAGTTTATTTTCTTGATA+AGG | - | chr8_2:2115652-2115671 | Msa1227030:CDS | 20.0% |
!!! | TGAGTTTATTTTCTTGATAA+GGG | - | chr8_2:2115653-2115672 | Msa1227030:CDS | 20.0% |
!! | ATTGAGTAATGATAATATCA+TGG | - | chr8_2:2115799-2115818 | Msa1227030:CDS | 20.0% |
!! | TGAATCATTATTTGTTTGTT+TGG | - | chr8_2:2115991-2116010 | Msa1227030:CDS | 20.0% |
!!! | ATTCAGTATGTGATTTATTT+TGG | - | chr8_2:2116115-2116134 | Msa1227030:CDS | 20.0% |
!!! | TTCAGTATGTGATTTATTTT+GGG | - | chr8_2:2116116-2116135 | Msa1227030:CDS | 20.0% |
!!! | TTCAGTTTTCTAATACATAA+CGG | + | chr8_2:2116546-2116565 | None:intergenic | 20.0% |
!!! | ACTTTTGTAAACAAAAAGTT+TGG | - | chr8_2:2116634-2116653 | Msa1227030:CDS | 20.0% |
!! | TTTACATGAATAAGTATCAA+AGG | + | chr8_2:2116672-2116691 | None:intergenic | 20.0% |
!! | GAAACTATCAATAACAAATA+AGG | + | chr8_2:2116770-2116789 | None:intergenic | 20.0% |
!!! | GTATTCTTTTATTCAAATGA+AGG | + | chr8_2:2116821-2116840 | None:intergenic | 20.0% |
!! | ACTTGTAAATATTATCTTTC+AGG | + | chr8_2:2116964-2116983 | None:intergenic | 20.0% |
!! | ATTTACAAGTTAAGAAATAC+TGG | - | chr8_2:2116974-2116993 | Msa1227030:CDS | 20.0% |
!! | TATTATAAGTTAGGAAATAC+TGG | - | chr8_2:2117046-2117065 | Msa1227030:intron | 20.0% |
!! | TGAATATAAAACGTATTTGA+AGG | + | chr8_2:2117230-2117249 | None:intergenic | 20.0% |
!!! | TACTTATCCTTTTTTTCTTT+GGG | - | chr8_2:2117324-2117343 | Msa1227030:intron | 20.0% |
!! | TACGATAATATTATATTAGC+TGG | - | chr8_2:2117936-2117955 | Msa1227030:intron | 20.0% |
!!! | TTTCTTACTTCTTTTATTAG+CGG | - | chr8_2:2118040-2118059 | Msa1227030:intron | 20.0% |
!! | GAATAAAACAGTAAAGTAAA+TGG | + | chr8_2:2118706-2118725 | None:intergenic | 20.0% |
!! | TTTAATCACATTAATAGAGA+TGG | + | chr8_2:2118854-2118873 | None:intergenic | 20.0% |
!!! | TCTTAATTTTGTTAGTCAAT+GGG | - | chr8_2:2119010-2119029 | Msa1227030:intron | 20.0% |
!! | CTCCTTATAATTTATAATTG+TGG | - | chr8_2:2119812-2119831 | Msa1227030:intron | 20.0% |
!! | TACTTATCATATTATTTGTC+TGG | - | chr8_2:2120637-2120656 | Msa1227030:intron | 20.0% |
!! | TATATATGTTACAAATGCTA+TGG | + | chr8_2:2121132-2121151 | None:intergenic | 20.0% |
!! | AACATATATAAGTTCAATTC+AGG | - | chr8_2:2121142-2121161 | Msa1227030:five_prime_UTR | 20.0% |
!! | ACATATATAAGTTCAATTCA+GGG | - | chr8_2:2121143-2121162 | Msa1227030:five_prime_UTR | 20.0% |
!!! | TTGTGTTTTTTATTTTCTAG+AGG | - | chr8_2:2121285-2121304 | Msa1227030:five_prime_UTR | 20.0% |
!! | ATATTGAGAAAACTAAAAAG+TGG | - | chr8_2:2121345-2121364 | Msa1227030:five_prime_UTR | 20.0% |
! | TGAATTAGATTGAATACCTT+TGG | + | chr8_2:2115207-2115226 | None:intergenic | 25.0% |
!!! | ATTTTGTTATTTTCTTCGTG+AGG | - | chr8_2:2115300-2115319 | Msa1227030:CDS | 25.0% |
!! | TAGAAAGTATGTGAATTAGT+TGG | - | chr8_2:2115454-2115473 | Msa1227030:CDS | 25.0% |
! | ATCTTTCTGTATTATTACGA+CGG | - | chr8_2:2115932-2115951 | Msa1227030:CDS | 25.0% |
!!! | TCAGTATGTGATTTATTTTG+GGG | - | chr8_2:2116117-2116136 | Msa1227030:CDS | 25.0% |
! | AGACTTAGAAAAAAGAATTG+TGG | + | chr8_2:2116305-2116324 | None:intergenic | 25.0% |
! | TTGAAGTTCCTATATATTTC+AGG | - | chr8_2:2116324-2116343 | Msa1227030:CDS | 25.0% |
!! | ATGAAGTACCTGAAATATAT+AGG | + | chr8_2:2116335-2116354 | None:intergenic | 25.0% |
! | ACTTCATAATATAGCAATTG+CGG | - | chr8_2:2116348-2116367 | Msa1227030:CDS | 25.0% |
!! | ATTACTTCAAGCAACTTTTT+GGG | + | chr8_2:2116400-2116419 | None:intergenic | 25.0% |
!! | AATTACTTCAAGCAACTTTT+TGG | + | chr8_2:2116401-2116420 | None:intergenic | 25.0% |
! | TGAAGTAATTTATAGCATCA+AGG | - | chr8_2:2116411-2116430 | Msa1227030:CDS | 25.0% |
!!! | TAGCTTTAGTTTTTCATGTT+TGG | - | chr8_2:2116490-2116509 | Msa1227030:CDS | 25.0% |
!! | TTTTTCATGTTTGGTATTTG+AGG | - | chr8_2:2116499-2116518 | Msa1227030:CDS | 25.0% |
! | AACTCACGCATTAAAATAAT+GGG | + | chr8_2:2116792-2116811 | None:intergenic | 25.0% |
! | AAACTCACGCATTAAAATAA+TGG | + | chr8_2:2116793-2116812 | None:intergenic | 25.0% |
!!! | ATTATTTTAATGCGTGAGTT+TGG | - | chr8_2:2116792-2116811 | Msa1227030:CDS | 25.0% |
!!! | CTACTTATCCTTTTTTTCTT+TGG | - | chr8_2:2117323-2117342 | Msa1227030:intron | 25.0% |
! | ATAAACTCCCAAAGAAAAAA+AGG | + | chr8_2:2117334-2117353 | None:intergenic | 25.0% |
! | GAGTTTATTCAGAGAAAATA+TGG | - | chr8_2:2117346-2117365 | Msa1227030:intron | 25.0% |
!! | ATATACCATACCTCTTTTAT+GGG | + | chr8_2:2117736-2117755 | None:intergenic | 25.0% |
!! | TATATACCATACCTCTTTTA+TGG | + | chr8_2:2117737-2117756 | None:intergenic | 25.0% |
!! | TTCTTACTTCTTTTATTAGC+GGG | - | chr8_2:2118041-2118060 | Msa1227030:intron | 25.0% |
! | ATAAGGGAGAAGTTTAAAAA+GGG | - | chr8_2:2118509-2118528 | Msa1227030:intron | 25.0% |
!! | TTGAAATTAGCAATTGGTTT+GGG | - | chr8_2:2118600-2118619 | Msa1227030:intron | 25.0% |
! | ATAATAAACAAGGATATACC+AGG | - | chr8_2:2118802-2118821 | Msa1227030:intron | 25.0% |
! | AATATACAGAATATAGATCC+TGG | + | chr8_2:2118823-2118842 | None:intergenic | 25.0% |
!!! | TGAAAGTTTGTTGTAGAATT+GGG | - | chr8_2:2118875-2118894 | Msa1227030:intron | 25.0% |
!! | GTCTTAATTTTGTTAGTCAA+TGG | - | chr8_2:2119009-2119028 | Msa1227030:intron | 25.0% |
! | TAGAAAGATAATTTGAAGGA+GGG | + | chr8_2:2119388-2119407 | None:intergenic | 25.0% |
! | TCCTTCAAATTATCTTTCTA+GGG | - | chr8_2:2119388-2119407 | Msa1227030:intron | 25.0% |
!! | AGCATTTTTAACAACAATCT+TGG | - | chr8_2:2119662-2119681 | Msa1227030:intron | 25.0% |
!! | GCATTTTTAACAACAATCTT+GGG | - | chr8_2:2119663-2119682 | Msa1227030:intron | 25.0% |
! | CGCCACAATTATAAATTATA+AGG | + | chr8_2:2119817-2119836 | None:intergenic | 25.0% |
! | TTACGACTTAAATTCTTTGA+AGG | + | chr8_2:2120268-2120287 | None:intergenic | 25.0% |
! | TTATCATATTATTTGTCTGG+AGG | - | chr8_2:2120640-2120659 | Msa1227030:intron | 25.0% |
! | TTATTTAAACTTACTCCACT+GGG | + | chr8_2:2121027-2121046 | None:intergenic | 25.0% |
! | TTTATTTAAACTTACTCCAC+TGG | + | chr8_2:2121028-2121047 | None:intergenic | 25.0% |
!! | TAAAAAGTGGATAGTTGTTT+TGG | - | chr8_2:2121358-2121377 | Msa1227030:five_prime_UTR | 25.0% |
CTTAGCAAAAACAACACAAA+GGG | - | chr8_2:2114806-2114825 | Msa1227030:three_prime_UTR | 30.0% | |
!! | GATTAAAACATGGTTTGGTT+TGG | + | chr8_2:2114851-2114870 | None:intergenic | 30.0% |
! | ACTTTCCCTCATTCAATTTT+AGG | - | chr8_2:2114913-2114932 | Msa1227030:three_prime_UTR | 30.0% |
GAAGACCTAAAATTGAATGA+GGG | + | chr8_2:2114921-2114940 | None:intergenic | 30.0% | |
AGAAGACCTAAAATTGAATG+AGG | + | chr8_2:2114922-2114941 | None:intergenic | 30.0% | |
AATTGGAATACAGAAATCGA+AGG | + | chr8_2:2114976-2114995 | None:intergenic | 30.0% | |
GAAAACGAAATCAAAGCAAT+CGG | + | chr8_2:2115237-2115256 | None:intergenic | 30.0% | |
CATCTTAATTGCTTCGTATT+AGG | - | chr8_2:2115256-2115275 | Msa1227030:CDS | 30.0% | |
TTCCAATAGTTGTGCTAAAA+GGG | - | chr8_2:2115624-2115643 | Msa1227030:CDS | 30.0% | |
! | TAAGGGCAATTTTTATGAGT+TGG | - | chr8_2:2115670-2115689 | Msa1227030:CDS | 30.0% |
!! | CATTGATGCTACTTGATTTT+CGG | - | chr8_2:2115712-2115731 | Msa1227030:CDS | 30.0% |
TTTGTATACATGACAGTTAC+TGG | - | chr8_2:2115739-2115758 | Msa1227030:CDS | 30.0% | |
!!! | GTGTTACTTTTCTTCATGAA+TGG | - | chr8_2:2115827-2115846 | Msa1227030:CDS | 30.0% |
!!! | TATGTGATTTATTTTGGGGA+TGG | - | chr8_2:2116121-2116140 | Msa1227030:CDS | 30.0% |
!!! | GTATGTTACTTTTACACGTA+TGG | - | chr8_2:2116433-2116452 | Msa1227030:CDS | 30.0% |
ATTAAAATGAAGGTAGACCT+AGG | - | chr8_2:2116600-2116619 | Msa1227030:CDS | 30.0% | |
AAAAGTCGAAATAATGACCT+AGG | + | chr8_2:2116620-2116639 | None:intergenic | 30.0% | |
ATGAATAAGTATCAAAGGCT+CGG | + | chr8_2:2116667-2116686 | None:intergenic | 30.0% | |
TTGCCAATTGGGAAATTAAT+TGG | + | chr8_2:2116705-2116724 | None:intergenic | 30.0% | |
TTAATTTCCCAATTGGCAAA+TGG | - | chr8_2:2116706-2116725 | Msa1227030:CDS | 30.0% | |
! | TGAGTGTTTTCAATTGTTGA+AGG | - | chr8_2:2116744-2116763 | Msa1227030:CDS | 30.0% |
TTTGTTCAAATTCCTTCTTC+TGG | - | chr8_2:2116893-2116912 | Msa1227030:CDS | 30.0% | |
TTGTTCAAATTCCTTCTTCT+GGG | - | chr8_2:2116894-2116913 | Msa1227030:CDS | 30.0% | |
TCTATTGGTATTCTTAAAGC+AGG | - | chr8_2:2116919-2116938 | Msa1227030:CDS | 30.0% | |
TACAAGTTAAGAAATACTGG+TGG | - | chr8_2:2116977-2116996 | Msa1227030:CDS | 30.0% | |
ACAAGTTAAGAAATACTGGT+GGG | - | chr8_2:2116978-2116997 | Msa1227030:CDS | 30.0% | |
AATGTTTACCAAGTAAAAGC+TGG | - | chr8_2:2117100-2117119 | Msa1227030:intron | 30.0% | |
TTATGTTCTCTCTTCTGTTA+TGG | - | chr8_2:2117170-2117189 | Msa1227030:intron | 30.0% | |
TATTCAACTTAATGCTGTTC+AGG | - | chr8_2:2117244-2117263 | Msa1227030:intron | 30.0% | |
! | GTTGGAAATAAAGTTGCTTT+GGG | - | chr8_2:2117415-2117434 | Msa1227030:intron | 30.0% |
! | TTGGAAATAAAGTTGCTTTG+GGG | - | chr8_2:2117416-2117435 | Msa1227030:intron | 30.0% |
TACAATATTTAGTGTTGCGA+CGG | + | chr8_2:2117524-2117543 | None:intergenic | 30.0% | |
!! | TTTGTTATTTCAACCTCTCT+AGG | - | chr8_2:2117636-2117655 | Msa1227030:intron | 30.0% |
!!! | GGATCAATCTTTTGAAATAG+GGG | + | chr8_2:2117715-2117734 | None:intergenic | 30.0% |
!!! | GGGATCAATCTTTTGAAATA+GGG | + | chr8_2:2117716-2117735 | None:intergenic | 30.0% |
!!! | TGGGATCAATCTTTTGAAAT+AGG | + | chr8_2:2117717-2117736 | None:intergenic | 30.0% |
AAAGATTGATCCCATAAAAG+AGG | - | chr8_2:2117723-2117742 | Msa1227030:intron | 30.0% | |
!! | AATTATAATGGGGGTGTTAA+TGG | - | chr8_2:2117789-2117808 | Msa1227030:intron | 30.0% |
! | TCTTACTTCTTTTATTAGCG+GGG | - | chr8_2:2118042-2118061 | Msa1227030:intron | 30.0% |
! | GCATAAATTGATTTCTCTCT+CGG | + | chr8_2:2118325-2118344 | None:intergenic | 30.0% |
TTGCTGTATGTGTATATCTA+AGG | - | chr8_2:2118435-2118454 | Msa1227030:CDS | 30.0% | |
TGCTGTATGTGTATATCTAA+GGG | - | chr8_2:2118436-2118455 | Msa1227030:CDS | 30.0% | |
AAAATGTGCTGCAATTGATA+AGG | - | chr8_2:2118492-2118511 | Msa1227030:intron | 30.0% | |
AAATGTGCTGCAATTGATAA+GGG | - | chr8_2:2118493-2118512 | Msa1227030:intron | 30.0% | |
GATAAGGGAGAAGTTTAAAA+AGG | - | chr8_2:2118508-2118527 | Msa1227030:intron | 30.0% | |
GCTAACTTGAAATTAGCAAT+TGG | - | chr8_2:2118594-2118613 | Msa1227030:intron | 30.0% | |
CTTGAAATTAGCAATTGGTT+TGG | - | chr8_2:2118599-2118618 | Msa1227030:intron | 30.0% | |
! | TTGTTACTGATCATTTTGCA+AGG | - | chr8_2:2118660-2118679 | Msa1227030:CDS | 30.0% |
!! | GTTTTATTCATCTTGTAGAG+AGG | - | chr8_2:2118717-2118736 | Msa1227030:CDS | 30.0% |
! | GTTTTCTTCTATTCCGATTT+TGG | - | chr8_2:2118768-2118787 | Msa1227030:CDS | 30.0% |
ACCTAACAGCATAATAAACA+AGG | - | chr8_2:2118792-2118811 | Msa1227030:intron | 30.0% | |
! | TCCTTGTTTATTATGCTGTT+AGG | + | chr8_2:2118796-2118815 | None:intergenic | 30.0% |
!! | CTGAAAGTTTGTTGTAGAAT+TGG | - | chr8_2:2118874-2118893 | Msa1227030:intron | 30.0% |
! | TGTAAAACTTTCTTGATAGC+TGG | - | chr8_2:2118935-2118954 | Msa1227030:intron | 30.0% |
TGGGTTCACAAAATTTAACT+AGG | - | chr8_2:2119354-2119373 | Msa1227030:intron | 30.0% | |
CTAGAAAGATAATTTGAAGG+AGG | + | chr8_2:2119389-2119408 | None:intergenic | 30.0% | |
CTCCTTCAAATTATCTTTCT+AGG | - | chr8_2:2119387-2119406 | Msa1227030:intron | 30.0% | |
!! | AAATTATCTTTCTAGGGCTT+TGG | - | chr8_2:2119394-2119413 | Msa1227030:intron | 30.0% |
ATCAAGTAATAGAACAGACA+CGG | - | chr8_2:2119631-2119650 | Msa1227030:intron | 30.0% | |
GGTGCATTTATTATCAACTT+GGG | - | chr8_2:2119684-2119703 | Msa1227030:intron | 30.0% | |
TTAGGTCAGGTAAATTCAAA+TGG | - | chr8_2:2120334-2120353 | Msa1227030:intron | 30.0% | |
TAGGTCAGGTAAATTCAAAT+GGG | - | chr8_2:2120335-2120354 | Msa1227030:intron | 30.0% | |
CTGTAGAAGAGATAATCAAT+TGG | - | chr8_2:2120429-2120448 | Msa1227030:intron | 30.0% | |
TCTAGCTAATTTAGCATATG+TGG | - | chr8_2:2120465-2120484 | Msa1227030:intron | 30.0% | |
!! | ATGTAAATTCTGGAACATTC+TGG | + | chr8_2:2120550-2120569 | None:intergenic | 30.0% |
TCCAGAATTTACATCTTTCT+AGG | - | chr8_2:2120556-2120575 | Msa1227030:intron | 30.0% | |
GTTGAATTTGAAGACGTAAA+TGG | - | chr8_2:2120724-2120743 | Msa1227030:intron | 30.0% | |
TTGAGGAAAACAATACTTTG+AGG | + | chr8_2:2120787-2120806 | None:intergenic | 30.0% | |
ACTTGAGAAAGCCAATATAT+TGG | - | chr8_2:2120870-2120889 | Msa1227030:intron | 30.0% | |
TAAAAAGTTGTAGCCGTATT+AGG | - | chr8_2:2120995-2121014 | Msa1227030:CDS | 30.0% | |
TATGTTACAAATGCTATGGA+AGG | + | chr8_2:2121128-2121147 | None:intergenic | 30.0% | |
ATCTACACCTCAAATTTCAA+AGG | + | chr8_2:2121255-2121274 | None:intergenic | 30.0% | |
GAGAGAAGAAAAGAAGAGAT+GGG | + | chr8_2:2114782-2114801 | None:intergenic | 35.0% | |
AGAGAGAAGAAAAGAAGAGA+TGG | + | chr8_2:2114783-2114802 | None:intergenic | 35.0% | |
!!! | CCTTTGTGTTGTTTTTGCTA+AGG | + | chr8_2:2114808-2114827 | None:intergenic | 35.0% |
CCTTAGCAAAAACAACACAA+AGG | - | chr8_2:2114805-2114824 | Msa1227030:three_prime_UTR | 35.0% | |
ACAGAAATCGAAGGTTGAAA+GGG | + | chr8_2:2114967-2114986 | None:intergenic | 35.0% | |
TACAGAAATCGAAGGTTGAA+AGG | + | chr8_2:2114968-2114987 | None:intergenic | 35.0% | |
!! | ATAATGCAAAGAAGCGTCTT+TGG | + | chr8_2:2115118-2115137 | None:intergenic | 35.0% |
GCTTCTTTGCATTATCAATC+TGG | - | chr8_2:2115123-2115142 | Msa1227030:CDS | 35.0% | |
AAACAAACCTAACGATCCAA+AGG | - | chr8_2:2115188-2115207 | Msa1227030:CDS | 35.0% | |
TTGAATACCTTTGGATCGTT+AGG | + | chr8_2:2115198-2115217 | None:intergenic | 35.0% | |
GTTACTTACATCACATCACA+TGG | + | chr8_2:2115538-2115557 | None:intergenic | 35.0% | |
GTGATGTAAGTAACGAGTAT+CGG | - | chr8_2:2115544-2115563 | Msa1227030:CDS | 35.0% | |
GTTCCAATAGTTGTGCTAAA+AGG | - | chr8_2:2115623-2115642 | Msa1227030:CDS | 35.0% | |
TCCAATAGTTGTGCTAAAAG+GGG | - | chr8_2:2115625-2115644 | Msa1227030:CDS | 35.0% | |
GCTCTTAACAAGCTTGAAAA+TGG | + | chr8_2:2116195-2116214 | None:intergenic | 35.0% | |
!! | TTCAAGCTTGTTAAGAGCAA+AGG | - | chr8_2:2116197-2116216 | Msa1227030:CDS | 35.0% |
! | AGAGCAAAGGACAATGATTT+TGG | - | chr8_2:2116210-2116229 | Msa1227030:CDS | 35.0% |
!! | CAAAGGACAATGATTTTGGT+GGG | - | chr8_2:2116214-2116233 | Msa1227030:CDS | 35.0% |
AAGATAACTCAAGGCTTGAT+GGG | + | chr8_2:2116257-2116276 | None:intergenic | 35.0% | |
AAAGATAACTCAAGGCTTGA+TGG | + | chr8_2:2116258-2116277 | None:intergenic | 35.0% | |
CACAACGAAAAGATAACTCA+AGG | + | chr8_2:2116266-2116285 | None:intergenic | 35.0% | |
AGCTATTGCAAAATTGAGAC+TGG | + | chr8_2:2116475-2116494 | None:intergenic | 35.0% | |
CGACAGCAAGATTAAAATGA+AGG | - | chr8_2:2116590-2116609 | Msa1227030:CDS | 35.0% | |
CAAGTTAAGAAATACTGGTG+GGG | - | chr8_2:2116979-2116998 | Msa1227030:CDS | 35.0% | |
CATAAAAGTCTACATGCTGT+AGG | + | chr8_2:2117155-2117174 | None:intergenic | 35.0% | |
CGTTGGAAATAAAGTTGCTT+TGG | - | chr8_2:2117414-2117433 | Msa1227030:intron | 35.0% | |
CTATTTACACCTGAAAACTG+CGG | + | chr8_2:2117466-2117485 | None:intergenic | 35.0% | |
TCTTTGCATAGTCATGAAGA+TGG | + | chr8_2:2117675-2117694 | None:intergenic | 35.0% | |
TCTTCATGACTATGCAAAGA+CGG | - | chr8_2:2117675-2117694 | Msa1227030:intron | 35.0% | |
TTGATCCCATAAAAGAGGTA+TGG | - | chr8_2:2117728-2117747 | Msa1227030:intron | 35.0% | |
!! | AGAAGAATTTGAGTTGCAAC+AGG | + | chr8_2:2118158-2118177 | None:intergenic | 35.0% |
!! | GATTGGCTGAATGTTTTCAT+TGG | - | chr8_2:2118199-2118218 | Msa1227030:intron | 35.0% |
TTGAGATTTGTGCATTCTCA+TGG | - | chr8_2:2118366-2118385 | Msa1227030:intron | 35.0% | |
TGAGATTTGTGCATTCTCAT+GGG | - | chr8_2:2118367-2118386 | Msa1227030:intron | 35.0% | |
GGGTGAGATACATAAATGTT+GGG | - | chr8_2:2118390-2118409 | Msa1227030:intron | 35.0% | |
TGTGTATATCTAAGGGAGAT+AGG | - | chr8_2:2118443-2118462 | Msa1227030:CDS | 35.0% | |
TATATCTAAGGGAGATAGGA+TGG | - | chr8_2:2118447-2118466 | Msa1227030:CDS | 35.0% | |
ATATCTAAGGGAGATAGGAT+GGG | - | chr8_2:2118448-2118467 | Msa1227030:CDS | 35.0% | |
!! | AATTGCAGCACATTTTGAGT+GGG | + | chr8_2:2118488-2118507 | None:intergenic | 35.0% |
!!! | TTTTTTGAGGGGATAACTGA+AGG | - | chr8_2:2118570-2118589 | Msa1227030:intron | 35.0% |
!! | TTTTTGAGGGGATAACTGAA+GGG | - | chr8_2:2118571-2118590 | Msa1227030:intron | 35.0% |
!! | AAATTAGCAATTGGTTTGGG+TGG | - | chr8_2:2118603-2118622 | Msa1227030:intron | 35.0% |
ATGCTGTTAGGTACCAAAAT+CGG | + | chr8_2:2118784-2118803 | None:intergenic | 35.0% | |
ATTAGCACTTGACCCTAAAT+CGG | + | chr8_2:2119264-2119283 | None:intergenic | 35.0% | |
! | TGATTATGCAGCCATGTTTT+TGG | - | chr8_2:2119328-2119347 | Msa1227030:intron | 35.0% |
TGAACCCATATCCAAAAACA+TGG | + | chr8_2:2119342-2119361 | None:intergenic | 35.0% | |
ACAAAATTTAACTAGGCCAG+CGG | - | chr8_2:2119361-2119380 | Msa1227030:intron | 35.0% | |
GCCCTAGAAAGATAATTTGA+AGG | + | chr8_2:2119392-2119411 | None:intergenic | 35.0% | |
TGCAGTTTCTGATTCTTACT+AGG | - | chr8_2:2119468-2119487 | Msa1227030:intron | 35.0% | |
AGATTTCAAAATCAGAGCCA+TGG | + | chr8_2:2119558-2119577 | None:intergenic | 35.0% | |
!! | TCAATAGCTTTATTGCCTTG+CGG | + | chr8_2:2119607-2119626 | None:intergenic | 35.0% |
CAAGGCAATAAAGCTATTGA+TGG | - | chr8_2:2119607-2119626 | Msa1227030:intron | 35.0% | |
GGGTGCATTTATTATCAACT+TGG | - | chr8_2:2119683-2119702 | Msa1227030:intron | 35.0% | |
AGATTTATCCTGTGAGAAAG+TGG | + | chr8_2:2119792-2119811 | None:intergenic | 35.0% | |
! | ATGTTTTCAGAAGGCAAGTT+TGG | - | chr8_2:2119877-2119896 | Msa1227030:intron | 35.0% |
!! | TGTCTGATGGCTTTAGAAAA+GGG | - | chr8_2:2119944-2119963 | Msa1227030:intron | 35.0% |
GAACTCGACATGATTTGATT+AGG | + | chr8_2:2119970-2119989 | None:intergenic | 35.0% | |
GAAGATCAAATTCCAGGTAA+TGG | - | chr8_2:2120055-2120074 | Msa1227030:intron | 35.0% | |
CTTCAAACGATTTGTACTGT+AGG | + | chr8_2:2120194-2120213 | None:intergenic | 35.0% | |
! | AGTACAAATCGTTTGAAGTC+TGG | - | chr8_2:2120196-2120215 | Msa1227030:intron | 35.0% |
TTAAGTCGTAAAAACTCGCA+TGG | - | chr8_2:2120277-2120296 | Msa1227030:intron | 35.0% | |
! | TTTTCAGTAGCAGTAGGTTT+AGG | - | chr8_2:2120316-2120335 | Msa1227030:intron | 35.0% |
AGGTCAGGTAAATTCAAATG+GGG | - | chr8_2:2120336-2120355 | Msa1227030:intron | 35.0% | |
GACATCTTCATAATACGAGA+GGG | + | chr8_2:2120410-2120429 | None:intergenic | 35.0% | |
AGACATCTTCATAATACGAG+AGG | + | chr8_2:2120411-2120430 | None:intergenic | 35.0% | |
TAATTTAGCATATGTGGAGC+TGG | - | chr8_2:2120471-2120490 | Msa1227030:intron | 35.0% | |
GCCTAGAAAGATGTAAATTC+TGG | + | chr8_2:2120560-2120579 | None:intergenic | 35.0% | |
GAATTTGAAGACGTAAATGG+AGG | - | chr8_2:2120727-2120746 | Msa1227030:intron | 35.0% | |
! | AGCCAATATATTGGTTACAC+AGG | - | chr8_2:2120879-2120898 | Msa1227030:intron | 35.0% |
TGCCTGTGTAACCAATATAT+TGG | + | chr8_2:2120884-2120903 | None:intergenic | 35.0% | |
CAAGAGATCAACATAAACTG+CGG | + | chr8_2:2120944-2120963 | None:intergenic | 35.0% | |
GTTTATGTTGATCTCTTGCT+TGG | - | chr8_2:2120946-2120965 | Msa1227030:CDS | 35.0% | |
!!! | ACGGCTACAACTTTTTAGTT+TGG | + | chr8_2:2120992-2121011 | None:intergenic | 35.0% |
ACACCTCAAATTTCAAAGGT+GGG | + | chr8_2:2121251-2121270 | None:intergenic | 35.0% | |
TACACCTCAAATTTCAAAGG+TGG | + | chr8_2:2121252-2121271 | None:intergenic | 35.0% | |
! | TTTGAGGTGTAGATCTGATT+CGG | - | chr8_2:2121261-2121280 | Msa1227030:five_prime_UTR | 35.0% |
! | TCGAAGGTTGAAAGGGTTTT+GGG | + | chr8_2:2114960-2114979 | None:intergenic | 40.0% |
! | ATCGAAGGTTGAAAGGGTTT+TGG | + | chr8_2:2114961-2114980 | None:intergenic | 40.0% |
TTATTAGATCGGCGATGAAG+CGG | - | chr8_2:2115577-2115596 | Msa1227030:CDS | 40.0% | |
CCAATAGTTGTGCTAAAAGG+GGG | - | chr8_2:2115626-2115645 | Msa1227030:CDS | 40.0% | |
TCTACGCATTGAGAGCTAAA+AGG | + | chr8_2:2115902-2115921 | None:intergenic | 40.0% | |
! | GCAAAGGACAATGATTTTGG+TGG | - | chr8_2:2116213-2116232 | Msa1227030:CDS | 40.0% |
GGGCCAATTAATTTCCCAAT+TGG | - | chr8_2:2116699-2116718 | Msa1227030:CDS | 40.0% | |
ATACTGGGTACAAAAGGTAG+TGG | + | chr8_2:2116854-2116873 | None:intergenic | 40.0% | |
CACAGTATACTGGGTACAAA+AGG | + | chr8_2:2116860-2116879 | None:intergenic | 40.0% | |
! | CTTTTGTACCCAGTATACTG+TGG | - | chr8_2:2116858-2116877 | Msa1227030:CDS | 40.0% |
GAAATACTGGTGTAGATGAG+TGG | - | chr8_2:2117059-2117078 | Msa1227030:intron | 40.0% | |
TAAAAGCTGGTGCAGAAGAT+AGG | - | chr8_2:2117113-2117132 | Msa1227030:intron | 40.0% | |
TATGGTTTACCCCCAATGAA+AGG | - | chr8_2:2117188-2117207 | Msa1227030:intron | 40.0% | |
ACCAGTTGATCCTTTCATTG+GGG | + | chr8_2:2117201-2117220 | None:intergenic | 40.0% | |
CACCAGTTGATCCTTTCATT+GGG | + | chr8_2:2117202-2117221 | None:intergenic | 40.0% | |
ACACCAGTTGATCCTTTCAT+TGG | + | chr8_2:2117203-2117222 | None:intergenic | 40.0% | |
ACGGAAGAGTCAAATTCATC+TGG | + | chr8_2:2117505-2117524 | None:intergenic | 40.0% | |
AACCTCTCTAGGCTATTATC+TGG | - | chr8_2:2117647-2117666 | Msa1227030:intron | 40.0% | |
AACCAGATAATAGCCTAGAG+AGG | + | chr8_2:2117652-2117671 | None:intergenic | 40.0% | |
TGACTATGCAAAGACGGTAT+CGG | - | chr8_2:2117681-2117700 | Msa1227030:intron | 40.0% | |
GAAAGAGAACACAGAGTTAG+GGG | + | chr8_2:2117825-2117844 | None:intergenic | 40.0% | |
GGAAAGAGAACACAGAGTTA+GGG | + | chr8_2:2117826-2117845 | None:intergenic | 40.0% | |
AGGAAAGAGAACACAGAGTT+AGG | + | chr8_2:2117827-2117846 | None:intergenic | 40.0% | |
CTCTTTCCTAAAGCAGTCAA+CGG | - | chr8_2:2117838-2117857 | Msa1227030:intron | 40.0% | |
!! | CAGCTGATTTTGATGCATCA+TGG | + | chr8_2:2117907-2117926 | None:intergenic | 40.0% |
TCTTCTTCCCAAGCTAATGT+TGG | - | chr8_2:2118172-2118191 | Msa1227030:intron | 40.0% | |
CTTCTTCCCAAGCTAATGTT+GGG | - | chr8_2:2118173-2118192 | Msa1227030:intron | 40.0% | |
! | ATCATGCCCAACATTAGCTT+GGG | + | chr8_2:2118182-2118201 | None:intergenic | 40.0% |
AATCATGCCCAACATTAGCT+TGG | + | chr8_2:2118183-2118202 | None:intergenic | 40.0% | |
AAGCTAATGTTGGGCATGAT+TGG | - | chr8_2:2118182-2118201 | Msa1227030:intron | 40.0% | |
! | ATCCTTTATTTGCAGCTGTC+TGG | - | chr8_2:2118247-2118266 | Msa1227030:CDS | 40.0% |
GAGATTTGTGCATTCTCATG+GGG | - | chr8_2:2118368-2118387 | Msa1227030:intron | 40.0% | |
AGATTTGTGCATTCTCATGG+GGG | - | chr8_2:2118369-2118388 | Msa1227030:intron | 40.0% | |
GGGGTGAGATACATAAATGT+TGG | - | chr8_2:2118389-2118408 | Msa1227030:intron | 40.0% | |
GGTCTATGCACAGAAAATGT+GGG | - | chr8_2:2118411-2118430 | Msa1227030:CDS | 40.0% | |
! | CAATTGCAGCACATTTTGAG+TGG | + | chr8_2:2118489-2118508 | None:intergenic | 40.0% |
AGGGAGAAGTTTAAAAAGGG+AGG | - | chr8_2:2118512-2118531 | Msa1227030:intron | 40.0% | |
GGGAGAAGTTTAAAAAGGGA+GGG | - | chr8_2:2118513-2118532 | Msa1227030:intron | 40.0% | |
AAAAAGGGAGGGATTACTGA+AGG | - | chr8_2:2118524-2118543 | Msa1227030:intron | 40.0% | |
AAAAGGGAGGGATTACTGAA+GGG | - | chr8_2:2118525-2118544 | Msa1227030:intron | 40.0% | |
!! | TTTTGAGGGGATAACTGAAG+GGG | - | chr8_2:2118572-2118591 | Msa1227030:intron | 40.0% |
ATAGTTGCAGACTCTCTGTT+AGG | - | chr8_2:2118975-2118994 | Msa1227030:intron | 40.0% | |
! | TGAGCTGGATCATTTTGCTT+AGG | - | chr8_2:2119091-2119110 | Msa1227030:intron | 40.0% |
!! | TTAGGATGTGTTGACTTACC+TGG | - | chr8_2:2119109-2119128 | Msa1227030:intron | 40.0% |
!! | ACTTACCTGGAAAGAGCATT+TGG | - | chr8_2:2119122-2119141 | Msa1227030:intron | 40.0% |
!! | AGTGCGAATCAAGTTGACAA+TGG | - | chr8_2:2119152-2119171 | Msa1227030:intron | 40.0% |
!! | GTGCGAATCAAGTTGACAAT+GGG | - | chr8_2:2119153-2119172 | Msa1227030:intron | 40.0% |
ATCAGCAGCAGATTCACTAA+TGG | + | chr8_2:2119231-2119250 | None:intergenic | 40.0% | |
ATCCATCCAGTTCCGATTTA+GGG | - | chr8_2:2119249-2119268 | Msa1227030:intron | 40.0% | |
! | TCCAGAACTTTCTCTGAAGA+TGG | - | chr8_2:2119302-2119321 | Msa1227030:intron | 40.0% |
! | CCAGAACTTTCTCTGAAGAT+GGG | - | chr8_2:2119303-2119322 | Msa1227030:intron | 40.0% |
!!! | TGCAGCCATGTTTTTGGATA+TGG | - | chr8_2:2119334-2119353 | Msa1227030:intron | 40.0% |
!!! | GCAGCCATGTTTTTGGATAT+GGG | - | chr8_2:2119335-2119354 | Msa1227030:intron | 40.0% |
CAAAATTTAACTAGGCCAGC+GGG | - | chr8_2:2119362-2119381 | Msa1227030:intron | 40.0% | |
!!! | CTTCTCGTTTTGCTGTTTTC+AGG | + | chr8_2:2119496-2119515 | None:intergenic | 40.0% |
TAACTAATTGTTCGTCGCTG+CGG | - | chr8_2:2119744-2119763 | Msa1227030:CDS | 40.0% | |
AAACATCGAGCTGCAAGTAT+TGG | + | chr8_2:2119863-2119882 | None:intergenic | 40.0% | |
!! | CTGTCTGATGGCTTTAGAAA+AGG | - | chr8_2:2119943-2119962 | Msa1227030:intron | 40.0% |
!! | TTGTTGGGTTGGAAAAATGG+AGG | - | chr8_2:2120020-2120039 | Msa1227030:intron | 40.0% |
!! | AAAATGGAGGCAACTTGTTG+TGG | - | chr8_2:2120033-2120052 | Msa1227030:intron | 40.0% |
GTTGTGGAAGATCAAATTCC+AGG | - | chr8_2:2120049-2120068 | Msa1227030:intron | 40.0% | |
!! | AATTCCAGGTAATGGACACA+TGG | - | chr8_2:2120063-2120082 | Msa1227030:intron | 40.0% |
TCCTCCACAGAAGAATTAGA+GGG | + | chr8_2:2120226-2120245 | None:intergenic | 40.0% | |
ATCCTCCACAGAAGAATTAG+AGG | + | chr8_2:2120227-2120246 | None:intergenic | 40.0% | |
!! | AAGGCATTTTCAGTAGCAGT+AGG | - | chr8_2:2120310-2120329 | Msa1227030:intron | 40.0% |
CTTTCTAGGCCATGTTTATG+CGG | - | chr8_2:2120570-2120589 | Msa1227030:intron | 40.0% | |
! | TTGCTTGCTGAATAGACCAA+AGG | - | chr8_2:2120603-2120622 | Msa1227030:intron | 40.0% |
AAGTAATCAGCAGCTTCCTT+TGG | + | chr8_2:2120622-2120641 | None:intergenic | 40.0% | |
GTGAGAAATTGCAAGTAGAG+AGG | - | chr8_2:2120698-2120717 | Msa1227030:intron | 40.0% | |
TGCGAAGAATTCTTCTCTTC+AGG | - | chr8_2:2120759-2120778 | Msa1227030:intron | 40.0% | |
! | TATTGTTTTCCTCAAGCCAG+AGG | - | chr8_2:2120792-2120811 | Msa1227030:intron | 40.0% |
AACATAAACTGCGGTAAGTG+TGG | + | chr8_2:2120935-2120954 | None:intergenic | 40.0% | |
! | CTTCATGAGTGTTGTATGCA+TGG | - | chr8_2:2121049-2121068 | Msa1227030:CDS | 40.0% |
CATGGTTATATCATTGTGCC+TGG | - | chr8_2:2121067-2121086 | Msa1227030:CDS | 40.0% | |
GCTAACTAAAACTGAGAGGT+GGG | + | chr8_2:2121093-2121112 | None:intergenic | 40.0% | |
TGCTAACTAAAACTGAGAGG+TGG | + | chr8_2:2121094-2121113 | None:intergenic | 40.0% | |
!!! | ACCTCTCAGTTTTAGTTAGC+AGG | - | chr8_2:2121093-2121112 | Msa1227030:CDS | 40.0% |
ACCTGCTAACTAAAACTGAG+AGG | + | chr8_2:2121097-2121116 | None:intergenic | 40.0% | |
CAAATTTAGGGGTCAGTTAC+AGG | - | chr8_2:2121203-2121222 | Msa1227030:five_prime_UTR | 40.0% | |
! | CGAAGGTTGAAAGGGTTTTG+GGG | + | chr8_2:2114959-2114978 | None:intergenic | 45.0% |
! | CCCCCTTTTAGCACAACTAT+TGG | + | chr8_2:2115629-2115648 | None:intergenic | 45.0% |
! | ACAGTTACTGGTCTCACCTA+AGG | - | chr8_2:2115751-2115770 | Msa1227030:CDS | 45.0% |
TTGACTTAGAGCTGCACCTT+AGG | + | chr8_2:2115770-2115789 | None:intergenic | 45.0% | |
ATTGCGGAATTCTTCCGAGA+TGG | - | chr8_2:2116364-2116383 | Msa1227030:CDS | 45.0% | |
TGGGATCAGAACAACCATCT+CGG | + | chr8_2:2116381-2116400 | None:intergenic | 45.0% | |
TCCCAATTGGCAAATGGCTT+CGG | - | chr8_2:2116712-2116731 | Msa1227030:CDS | 45.0% | |
ACCGAAGCCATTTGCCAATT+GGG | + | chr8_2:2116716-2116735 | None:intergenic | 45.0% | |
TACCGAAGCCATTTGCCAAT+TGG | + | chr8_2:2116717-2116736 | None:intergenic | 45.0% | |
TGTACCCAGTATACTGTGGT+TGG | - | chr8_2:2116862-2116881 | Msa1227030:CDS | 45.0% | |
GTCACCAACCACAGTATACT+GGG | + | chr8_2:2116869-2116888 | None:intergenic | 45.0% | |
TGTCACCAACCACAGTATAC+TGG | + | chr8_2:2116870-2116889 | None:intergenic | 45.0% | |
TCCTTCTTCTGGGTCTCTAT+TGG | - | chr8_2:2116904-2116923 | Msa1227030:CDS | 45.0% | |
ACCAATAGAGACCCAGAAGA+AGG | + | chr8_2:2116908-2116927 | None:intergenic | 45.0% | |
CTGGTGTAGATGAGTGGAAT+AGG | - | chr8_2:2117065-2117084 | Msa1227030:intron | 45.0% | |
! | CTTCTGCACCAGCTTTTACT+TGG | + | chr8_2:2117111-2117130 | None:intergenic | 45.0% |
CCAGTTGATCCTTTCATTGG+GGG | + | chr8_2:2117200-2117219 | None:intergenic | 45.0% | |
TCCTTGATCCACATACGTCA+GGG | + | chr8_2:2117380-2117399 | None:intergenic | 45.0% | |
GGAGAGCTAGTTAACAACGT+TGG | - | chr8_2:2117397-2117416 | Msa1227030:intron | 45.0% | |
!! | AAAGTTGCTTTGGGGTCCAA+AGG | - | chr8_2:2117424-2117443 | Msa1227030:intron | 45.0% |
!! | TGCTAAGGCATTGCTTCCTT+TGG | + | chr8_2:2117443-2117462 | None:intergenic | 45.0% |
!!! | TGCAAAGACGGTATCGGTTT+TGG | - | chr8_2:2117687-2117706 | Msa1227030:intron | 45.0% |
TTGATGCATCATGGCATGCA+AGG | + | chr8_2:2117898-2117917 | None:intergenic | 45.0% | |
! | ACTTCTTTTATTAGCGGGGC+TGG | - | chr8_2:2118046-2118065 | Msa1227030:intron | 45.0% |
CTCCAGACAGCTGCAAATAA+AGG | + | chr8_2:2118252-2118271 | None:intergenic | 45.0% | |
! | CTTTATTTGCAGCTGTCTGG+AGG | - | chr8_2:2118250-2118269 | Msa1227030:CDS | 45.0% |
GATTTGTGCATTCTCATGGG+GGG | - | chr8_2:2118370-2118389 | Msa1227030:intron | 45.0% | |
GGGTCTATGCACAGAAAATG+TGG | - | chr8_2:2118410-2118429 | Msa1227030:CDS | 45.0% | |
AAAGGGAGGGATTACTGAAG+GGG | - | chr8_2:2118526-2118545 | Msa1227030:intron | 45.0% | |
!! | AGCAATTGGTTTGGGTGGTT+TGG | - | chr8_2:2118608-2118627 | Msa1227030:CDS | 45.0% |
!! | GCAATTGGTTTGGGTGGTTT+GGG | - | chr8_2:2118609-2118628 | Msa1227030:CDS | 45.0% |
ACATGTGCACTATTCTGAGC+TGG | - | chr8_2:2119076-2119095 | Msa1227030:intron | 45.0% | |
CAACACCAAATGCTCTTTCC+AGG | + | chr8_2:2119130-2119149 | None:intergenic | 45.0% | |
!! | CTGGAAAGAGCATTTGGTGT+TGG | - | chr8_2:2119128-2119147 | Msa1227030:intron | 45.0% |
GCAGATTCACTAATGGTGAC+AGG | + | chr8_2:2119224-2119243 | None:intergenic | 45.0% | |
GATCCATCCAGTTCCGATTT+AGG | - | chr8_2:2119248-2119267 | Msa1227030:intron | 45.0% | |
ACTTGACCCTAAATCGGAAC+TGG | + | chr8_2:2119258-2119277 | None:intergenic | 45.0% | |
CCCATCTTCAGAGAAAGTTC+TGG | + | chr8_2:2119306-2119325 | None:intergenic | 45.0% | |
! | GCTCAAGTTGCAACTTTGCA+AGG | - | chr8_2:2119445-2119464 | Msa1227030:intron | 45.0% |
AGCAAAACGAGAAGTCAAGC+TGG | - | chr8_2:2119502-2119521 | Msa1227030:intron | 45.0% | |
ACGTGGAAGAGATTCATCCA+TGG | - | chr8_2:2119538-2119557 | Msa1227030:intron | 45.0% | |
TCTCAGCTTGAATATGCTCG+TGG | - | chr8_2:2119575-2119594 | Msa1227030:intron | 45.0% | |
!! | ATAGCTTTATTGCCTTGCGG+TGG | + | chr8_2:2119604-2119623 | None:intergenic | 45.0% |
GTCCTCATTCTTCTTCTCGA+AGG | - | chr8_2:2119718-2119737 | Msa1227030:CDS | 45.0% | |
TGCCTTCGAGAAGAAGAATG+AGG | + | chr8_2:2119723-2119742 | None:intergenic | 45.0% | |
GAAGGAGCAGCAAAAAAAGC+TGG | - | chr8_2:2119766-2119785 | Msa1227030:CDS | 45.0% | |
! | TGCAGCTCGATGTTTTCAGA+AGG | - | chr8_2:2119868-2119887 | Msa1227030:intron | 45.0% |
! | TCAGACAGCATTCTGAGAGT+CGG | + | chr8_2:2119931-2119950 | None:intergenic | 45.0% |
ACTCTCAGAATGCTGTCTGA+TGG | - | chr8_2:2119931-2119950 | Msa1227030:intron | 45.0% | |
TCGAGTTCCTTCAGAGAAGA+TGG | - | chr8_2:2119982-2120001 | Msa1227030:intron | 45.0% | |
AGTTCCTTCAGAGAAGATGG+AGG | - | chr8_2:2119985-2120004 | Msa1227030:intron | 45.0% | |
AGGTTGGAGTTTGCGTTGTT+GGG | - | chr8_2:2120005-2120024 | Msa1227030:intron | 45.0% | |
!! | GCGTTGTTGGGTTGGAAAAA+TGG | - | chr8_2:2120017-2120036 | Msa1227030:intron | 45.0% |
GATTCCATGTGTCCATTACC+TGG | + | chr8_2:2120070-2120089 | None:intergenic | 45.0% | |
GACACATGGAATCCTCCAAA+GGG | - | chr8_2:2120077-2120096 | Msa1227030:intron | 45.0% | |
ACACATGGAATCCTCCAAAG+GGG | - | chr8_2:2120078-2120097 | Msa1227030:intron | 45.0% | |
AGTTATCGATGTCCCTTGCT+CGG | - | chr8_2:2120134-2120153 | Msa1227030:intron | 45.0% | |
!! | GCAAGTGAAGAGCATTCAAG+AGG | + | chr8_2:2120165-2120184 | None:intergenic | 45.0% |
CTTGCCCTCTAATTCTTCTG+TGG | - | chr8_2:2120219-2120238 | Msa1227030:intron | 45.0% | |
AGTAGCAGTAGGTTTAGGTC+AGG | - | chr8_2:2120321-2120340 | Msa1227030:intron | 45.0% | |
TGGGGACACAAAAGAACAGA+AGG | - | chr8_2:2120354-2120373 | Msa1227030:intron | 45.0% | |
GGGGACACAAAAGAACAGAA+GGG | - | chr8_2:2120355-2120374 | Msa1227030:intron | 45.0% | |
GACACAAAAGAACAGAAGGG+AGG | - | chr8_2:2120358-2120377 | Msa1227030:intron | 45.0% | |
CATAATACGAGAGGGAGTTC+TGG | + | chr8_2:2120402-2120421 | None:intergenic | 45.0% | |
AGCATATGTGGAGCTGGAAT+TGG | - | chr8_2:2120477-2120496 | Msa1227030:intron | 45.0% | |
GGAATTGGACAATCCTGTGA+AGG | - | chr8_2:2120492-2120511 | Msa1227030:intron | 45.0% | |
TCACAGTCGTCTTGGCTAAA+TGG | + | chr8_2:2120682-2120701 | None:intergenic | 45.0% | |
GCAATTTCTCACAGTCGTCT+TGG | + | chr8_2:2120690-2120709 | None:intergenic | 45.0% | |
AGAAGAATTCTTCGCAGCAG+TGG | + | chr8_2:2120755-2120774 | None:intergenic | 45.0% | |
TGCTGTAATGTCTGCAATGC+AGG | - | chr8_2:2120843-2120862 | Msa1227030:intron | 45.0% | |
GCTGTAATGTCTGCAATGCA+GGG | - | chr8_2:2120844-2120863 | Msa1227030:intron | 45.0% | |
AGTTTGGCTAGAGCTTCTTG+TGG | + | chr8_2:2120976-2120995 | None:intergenic | 45.0% | |
TTAAACTTACTCCACTGGGC+AGG | + | chr8_2:2121023-2121042 | None:intergenic | 45.0% | |
ATTTAGGGGTCAGTTACAGG+TGG | - | chr8_2:2121206-2121225 | Msa1227030:five_prime_UTR | 45.0% | |
!! | GTGCCCACCTTTGAAATTTG+AGG | - | chr8_2:2121245-2121264 | Msa1227030:five_prime_UTR | 45.0% |
!!! | ATTTTCTTTAAAAATTATAA+TGG | - | chr8_2:2117777-2117796 | Msa1227030:intron | 5.0% |
!!! | TTTTCTTTAAAAATTATAAT+GGG | - | chr8_2:2117778-2117797 | Msa1227030:intron | 5.0% |
!!! | TTTTTTTTTTTTTTTTTTTG+AGG | - | chr8_2:2118557-2118576 | Msa1227030:intron | 5.0% |
!!! | TTTTTTTTTTTTTTTTTTGA+GGG | - | chr8_2:2118558-2118577 | Msa1227030:intron | 5.0% |
CCATAGCGAGATCGAGGAAT+TGG | + | chr8_2:2114993-2115012 | None:intergenic | 50.0% | |
CCAATTCCTCGATCTCGCTA+TGG | - | chr8_2:2114990-2115009 | Msa1227030:three_prime_UTR | 50.0% | |
GAGATTCCATAGCGAGATCG+AGG | + | chr8_2:2114999-2115018 | None:intergenic | 50.0% | |
GTGCGTGCATGCATGTATGT+AGG | - | chr8_2:2116018-2116037 | Msa1227030:CDS | 50.0% | |
TGGCAAATGGCTTCGGTAGA+TGG | - | chr8_2:2116719-2116738 | Msa1227030:CDS | 50.0% | |
GAAATACTGGTGGGGATGAG+TGG | - | chr8_2:2116987-2117006 | Msa1227030:CDS | 50.0% | |
CCCCCAATGAAAGGATCAAC+TGG | - | chr8_2:2117197-2117216 | Msa1227030:intron | 50.0% | |
TCCCTGACGTATGTGGATCA+AGG | - | chr8_2:2117376-2117395 | Msa1227030:intron | 50.0% | |
CTCCTTGATCCACATACGTC+AGG | + | chr8_2:2117381-2117400 | None:intergenic | 50.0% | |
! | ACCTGAAAACTGCGGTGCTA+AGG | + | chr8_2:2117458-2117477 | None:intergenic | 50.0% |
! | GTAGAGCCGTTGACTGCTTT+AGG | + | chr8_2:2117847-2117866 | None:intergenic | 50.0% |
GAGTCTGCAACTATGAGTGC+AGG | + | chr8_2:2118969-2118988 | None:intergenic | 50.0% | |
GACCCTAAATCGGAACTGGA+TGG | + | chr8_2:2119254-2119273 | None:intergenic | 50.0% | |
TAATTGTTCGTCGCTGCGGA+AGG | - | chr8_2:2119748-2119767 | Msa1227030:CDS | 50.0% | |
! | AAAGCTGGCCACTTTCTCAC+AGG | - | chr8_2:2119781-2119800 | Msa1227030:CDS | 50.0% |
TAATTGTGGCGTGCAGCACT+TGG | - | chr8_2:2119826-2119845 | Msa1227030:intron | 50.0% | |
CCAACCTCCATCTTCTCTGA+AGG | + | chr8_2:2119992-2120011 | None:intergenic | 50.0% | |
CCTTCAGAGAAGATGGAGGT+TGG | - | chr8_2:2119989-2120008 | Msa1227030:intron | 50.0% | |
GAGGTTGGAGTTTGCGTTGT+TGG | - | chr8_2:2120004-2120023 | Msa1227030:intron | 50.0% | |
TGGAGTTTGCGTTGTTGGGT+TGG | - | chr8_2:2120009-2120028 | Msa1227030:intron | 50.0% | |
GGACACATGGAATCCTCCAA+AGG | - | chr8_2:2120076-2120095 | Msa1227030:intron | 50.0% | |
TCCTCCAAAGGGGATGATTG+CGG | - | chr8_2:2120088-2120107 | Msa1227030:intron | 50.0% | |
ATTGCGGTCCAGGTGAAGAT+GGG | - | chr8_2:2120104-2120123 | Msa1227030:intron | 50.0% | |
GCCCTCTAATTCTTCTGTGG+AGG | - | chr8_2:2120222-2120241 | Msa1227030:intron | 50.0% | |
! | TGTTTTCCTCAAGCCAGAGG+AGG | - | chr8_2:2120795-2120814 | Msa1227030:intron | 50.0% |
CTCTGGACTGTTGGGCAATA+TGG | + | chr8_2:2120911-2120930 | None:intergenic | 50.0% | |
CATATTGCCCAACAGTCCAG+AGG | - | chr8_2:2120909-2120928 | Msa1227030:intron | 50.0% | |
CACTGGGCAGGAACCTAATA+CGG | + | chr8_2:2121011-2121030 | None:intergenic | 50.0% | |
!! | TCGCGGTTGGTGGTTGAAGA+AGG | + | chr8_2:2115042-2115061 | None:intergenic | 55.0% |
!! | GAAAACGCCGTCGTCGACTT+CGG | + | chr8_2:2115076-2115095 | None:intergenic | 55.0% |
AGCGTCTTTGGCAAGAGCGA+CGG | + | chr8_2:2115106-2115125 | None:intergenic | 55.0% | |
CTGGTGGGGATGAGTGGAAT+AGG | - | chr8_2:2116993-2117012 | Msa1227030:CDS | 55.0% | |
CGAGCTTTCCCTGACGTATG+TGG | - | chr8_2:2117369-2117388 | Msa1227030:intron | 55.0% | |
! | GCCTTAGCACCGCAGTTTTC+AGG | - | chr8_2:2117454-2117473 | Msa1227030:intron | 55.0% |
! | TGGTTTGGGTGGTTTGGGTC+TGG | - | chr8_2:2118614-2118633 | Msa1227030:CDS | 55.0% |
! | GGTTTGGGTGGTTTGGGTCT+GGG | - | chr8_2:2118615-2118634 | Msa1227030:CDS | 55.0% |
! | GGTGGTTTGGGTCTGGGAAT+TGG | - | chr8_2:2118621-2118640 | Msa1227030:CDS | 55.0% |
TAATTTGAAGGAGGGCCCGC+TGG | + | chr8_2:2119380-2119399 | None:intergenic | 55.0% | |
CTGGCGATGAACATTGCACG+TGG | - | chr8_2:2119521-2119540 | Msa1227030:intron | 55.0% | |
TCTACAAGCAGCCCCTCTTG+TGG | - | chr8_2:2119903-2119922 | Msa1227030:intron | 55.0% | |
TGAGAGTCGGAGCCACAAGA+GGG | + | chr8_2:2119918-2119937 | None:intergenic | 55.0% | |
ACCGCAATCATCCCCTTTGG+AGG | + | chr8_2:2120092-2120111 | None:intergenic | 55.0% | |
TGGACCGCAATCATCCCCTT+TGG | + | chr8_2:2120095-2120114 | None:intergenic | 55.0% | |
AAAGGGGATGATTGCGGTCC+AGG | - | chr8_2:2120094-2120113 | Msa1227030:intron | 55.0% | |
GATTGCGGTCCAGGTGAAGA+TGG | - | chr8_2:2120103-2120122 | Msa1227030:intron | 55.0% | |
!! | CTCGCATGGCGCTGATTCAA+AGG | - | chr8_2:2120291-2120310 | Msa1227030:intron | 55.0% |
ACAGAAGGGAGGAGCTAGTC+AGG | - | chr8_2:2120369-2120388 | Msa1227030:intron | 55.0% | |
AGGCCATGTTTATGCGGCAG+AGG | - | chr8_2:2120576-2120595 | Msa1227030:intron | 55.0% | |
GAGCCTCTGCCGCATAAACA+TGG | + | chr8_2:2120582-2120601 | None:intergenic | 55.0% | |
ATTGATGCCCTTGCCTCCTC+TGG | + | chr8_2:2120811-2120830 | None:intergenic | 55.0% | |
AGTGTGGCCTCTGGACTGTT+GGG | + | chr8_2:2120919-2120938 | None:intergenic | 55.0% | |
AAGTGTGGCCTCTGGACTGT+TGG | + | chr8_2:2120920-2120939 | None:intergenic | 55.0% | |
CGTATTAGGTTCCTGCCCAG+TGG | - | chr8_2:2121009-2121028 | Msa1227030:CDS | 55.0% | |
CTAAAACTGAGAGGTGGGCC+AGG | + | chr8_2:2121088-2121107 | None:intergenic | 55.0% | |
GGTCAGTTACAGGTGGAGAC+TGG | - | chr8_2:2121213-2121232 | Msa1227030:five_prime_UTR | 55.0% | |
TGCTCGTGGTAACCACCGCA+AGG | - | chr8_2:2119589-2119608 | Msa1227030:intron | 60.0% | |
GAGAGTCGGAGCCACAAGAG+GGG | + | chr8_2:2119917-2119936 | None:intergenic | 60.0% | |
CTGAGAGTCGGAGCCACAAG+AGG | + | chr8_2:2119919-2119938 | None:intergenic | 60.0% | |
TTCAGCCGCCCATCTTCACC+TGG | + | chr8_2:2120115-2120134 | None:intergenic | 60.0% | |
!! | CAAGAGGCACTGCCGAGCAA+GGG | + | chr8_2:2120149-2120168 | None:intergenic | 60.0% |
!! | TCAAGAGGCACTGCCGAGCA+AGG | + | chr8_2:2120150-2120169 | None:intergenic | 60.0% |
GCAGCTGCAAGTGCCTTCAC+AGG | + | chr8_2:2120508-2120527 | None:intergenic | 60.0% | |
TCCTCAAGCCAGAGGAGGCA+AGG | - | chr8_2:2120800-2120819 | Msa1227030:intron | 60.0% | |
CCTCAAGCCAGAGGAGGCAA+GGG | - | chr8_2:2120801-2120820 | Msa1227030:intron | 60.0% | |
ACTGCGGTAAGTGTGGCCTC+TGG | + | chr8_2:2120928-2120947 | None:intergenic | 60.0% | |
GGAAGGAGAGTCGCGGTTGG+TGG | + | chr8_2:2115052-2115071 | None:intergenic | 65.0% | |
CTTCGGCGGAAGGAGAGTCG+CGG | + | chr8_2:2115059-2115078 | None:intergenic | 65.0% | |
CCTTCCGCCGAAGTCGACGA+CGG | - | chr8_2:2115066-2115085 | Msa1227030:three_prime_UTR | 65.0% | |
!! | AACGCCGTCGTCGACTTCGG+CGG | + | chr8_2:2115073-2115092 | None:intergenic | 65.0% |
! | GGCGTGCAGCACTTGGCTTG+TGG | - | chr8_2:2119833-2119852 | Msa1227030:intron | 65.0% |
GCGGTCCAGGTGAAGATGGG+CGG | - | chr8_2:2120107-2120126 | Msa1227030:intron | 65.0% | |
! | CCCTTGCCTCCTCTGGCTTG+AGG | + | chr8_2:2120804-2120823 | None:intergenic | 65.0% |
GGCGGAAGGAGAGTCGCGGT+TGG | + | chr8_2:2115055-2115074 | None:intergenic | 70.0% | |
!! | CCGTCGTCGACTTCGGCGGA+AGG | + | chr8_2:2115069-2115088 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 2114747 | 2121400 | 2114747 | ID=Msa1227030;Name=Msa1227030 |
chr8_2 | mRNA | 2114747 | 2121400 | 2114747 | ID=Msa1227030-mRNA-1;Parent=Msa1227030;Name=Msa1227030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=262|1|1|1|1|1|6|344|857 |
chr8_2 | exon | 2114747 | 2117034 | 2114747 | ID=Msa1227030-mRNA-1:exon:506;Parent=Msa1227030-mRNA-1 |
chr8_2 | exon | 2118222 | 2118293 | 2118222 | ID=Msa1227030-mRNA-1:exon:505;Parent=Msa1227030-mRNA-1 |
chr8_2 | exon | 2118403 | 2118489 | 2118403 | ID=Msa1227030-mRNA-1:exon:504;Parent=Msa1227030-mRNA-1 |
chr8_2 | exon | 2118607 | 2118789 | 2118607 | ID=Msa1227030-mRNA-1:exon:503;Parent=Msa1227030-mRNA-1 |
chr8_2 | exon | 2119715 | 2119801 | 2119715 | ID=Msa1227030-mRNA-1:exon:502;Parent=Msa1227030-mRNA-1 |
chr8_2 | exon | 2120938 | 2121400 | 2120938 | ID=Msa1227030-mRNA-1:exon:501;Parent=Msa1227030-mRNA-1 |
chr8_2 | five_prime_UTR | 2121139 | 2121400 | 2121139 | ID=Msa1227030-mRNA-1:five_prime_utr;Parent=Msa1227030-mRNA-1 |
chr8_2 | CDS | 2120938 | 2121138 | 2120938 | ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1 |
chr8_2 | CDS | 2119715 | 2119801 | 2119715 | ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1 |
chr8_2 | CDS | 2118607 | 2118789 | 2118607 | ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1 |
chr8_2 | CDS | 2118403 | 2118489 | 2118403 | ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1 |
chr8_2 | CDS | 2118222 | 2118293 | 2118222 | ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1 |
chr8_2 | CDS | 2115091 | 2117034 | 2115091 | ID=Msa1227030-mRNA-1:cds;Parent=Msa1227030-mRNA-1 |
chr8_2 | three_prime_UTR | 2114747 | 2115090 | 2114747 | ID=Msa1227030-mRNA-1:three_prime_utr;Parent=Msa1227030-mRNA-1 |
Gene Sequence |
Protein sequence |