AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0485430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485430 MtrunA17_Chr4g0064341 96.409 724 26 0 1 724 1 724 0.0 1437
Msa0485430 MtrunA17_Chr4g0064351 100.000 65 0 0 793 857 1 65 3.65e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485430 AT5G35430.1 46.970 858 381 13 1 856 1 786 0.0 698

Find 225 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTCAAATTATCTTTCT+AGG 0.226319 3_4:-3123620 Msa0485430:CDS
GATCCATCCAGTTCCGATTT+AGG 0.229483 3_4:-3123759 Msa0485430:CDS
TCACAGTCGTCTTGGCTAAA+TGG 0.235042 3_4:+3122328 None:intergenic
AACATATATAAGTTCAATTC+AGG 0.235092 3_4:-3121865 Msa0485430:three_prime_UTR
CAAATTTAGGGGTCAGTTAC+AGG 0.246780 3_4:-3121804 Msa0485430:three_prime_UTR
TCCAGAATTTACATCTTTCT+AGG 0.251642 3_4:-3122451 Msa0485430:CDS
ATCGAAGGTTGAAAGGGTTT+TGG 0.256233 3_4:+3128049 None:intergenic
GTTGAATTTGAAGACGTAAA+TGG 0.270621 3_4:-3122283 Msa0485430:CDS
ATCCATCCAGTTCCGATTTA+GGG 0.273841 3_4:-3123758 Msa0485430:CDS
TGCAAAGACGGTATCGGTTT+TGG 0.280040 3_4:-3125320 Msa0485430:CDS
CTCTGGACTGTTGGGCAATA+TGG 0.288023 3_4:+3122099 None:intergenic
AAATTATCTTTCTAGGGCTT+TGG 0.297084 3_4:-3123613 Msa0485430:CDS
CGCCACAATTATAAATTATA+AGG 0.301160 3_4:+3123193 None:intergenic
TGCGAAGAATTCTTCTCTTC+AGG 0.309254 3_4:-3122248 Msa0485430:CDS
TGCTAAGGCATTGCTTCCTT+TGG 0.311529 3_4:+3125567 None:intergenic
GTCGGAAATAAAGTTGCTTT+GGG 0.323188 3_4:-3125592 Msa0485430:CDS
GAGTTTATTCAGAGAAAATA+TGG 0.324465 3_4:-3125661 Msa0485430:intron
CGTCGGAAATAAAGTTGCTT+TGG 0.335977 3_4:-3125593 Msa0485430:CDS
TACTTATCATATTATTTGTC+TGG 0.338404 3_4:-3122370 Msa0485430:CDS
ATAATGCAAAGAAGCGTCTT+TGG 0.339590 3_4:+3127892 None:intergenic
ATGTAAATTCTGGAACATTC+TGG 0.345616 3_4:+3122460 None:intergenic
GAGGTTGGAGTTTGCGTTGT+TGG 0.355655 3_4:-3123003 Msa0485430:CDS
GCCTAGAAAGATGTAAATTC+TGG 0.359052 3_4:+3122450 None:intergenic
TGCTGTAATGTCTGCAATGC+AGG 0.360550 3_4:-3122164 Msa0485430:CDS
AGCATATGTGGAGCTGGAAT+TGG 0.364524 3_4:-3122530 Msa0485430:CDS
ATTGATGCCCTTGCCTCCTC+TGG 0.366433 3_4:+3122199 None:intergenic
AACCTCTCTAGGCTATTATC+TGG 0.370844 3_4:-3125360 Msa0485430:intron
GCTTCTTTGCATTATCAATC+TGG 0.377573 3_4:-3127884 Msa0485430:CDS
GTTGTGGAAGATCAAATTCC+AGG 0.383285 3_4:-3122958 Msa0485430:CDS
TTACGACTTAAATTCTTTGA+AGG 0.383757 3_4:+3122742 None:intergenic
CAACACCAAATGCTCTTTCC+AGG 0.384211 3_4:+3123880 None:intergenic
TGCCTGTGTAACCAATATAT+TGG 0.385512 3_4:+3122126 None:intergenic
CCATAGCGAGATCGAGGAAT+TGG 0.392164 3_4:+3128017 None:intergenic
CATAATACGAGAGGGAGTTC+TGG 0.398213 3_4:+3122608 None:intergenic
AAAGGGGATGATTGCGGTCC+AGG 0.399591 3_4:-3122913 Msa0485430:CDS
ACAGAAGGGAGGAGCTAGTC+AGG 0.399864 3_4:-3122638 Msa0485430:CDS
TTGAATACCTTTGGATCGTT+AGG 0.400570 3_4:+3127812 None:intergenic
TCCTTCAAATTATCTTTCTA+GGG 0.402240 3_4:-3123619 Msa0485430:CDS
GAACTCGACATGATTTGATT+AGG 0.405082 3_4:+3123040 None:intergenic
ACTTACCTGGAAAGAGCATT+TGG 0.407981 3_4:-3123885 Msa0485430:CDS
TTAGGTCAGGTAAATTCAAA+TGG 0.408410 3_4:-3122673 Msa0485430:CDS
CTGTCTGATGGCTTTAGAAA+AGG 0.409270 3_4:-3123064 Msa0485430:CDS
AGTACAAATCGTTTGAAGTC+TGG 0.409320 3_4:-3122811 Msa0485430:CDS
GTGCCCACCTTTGAAATTTG+AGG 0.411848 3_4:-3121762 Msa0485430:three_prime_UTR
ACTTGAGAAAGCCAATATAT+TGG 0.412594 3_4:-3122137 Msa0485430:CDS
TTTGAGGTGTAGATCTGATT+CGG 0.416437 3_4:-3121746 Msa0485430:three_prime_UTR
CCCATCTTCAGAGAAAGTTC+TGG 0.420092 3_4:+3123704 None:intergenic
ATCCTCCACAGAAGAATTAG+AGG 0.422192 3_4:+3122783 None:intergenic
CTCCTTGATCCACATACGTC+AGG 0.423689 3_4:+3125629 None:intergenic
TCTAGCTAATTTAGCATATG+TGG 0.425924 3_4:-3122542 Msa0485430:CDS
TCCAGAACTTTCTCTGAAGA+TGG 0.426206 3_4:-3123705 Msa0485430:CDS
GTTTATGTTGATCTCTTGCT+TGG 0.437855 3_4:-3122061 Msa0485430:CDS
GGGTGCATTTATTATCAACT+TGG 0.438451 3_4:-3123324 Msa0485430:CDS
AGGTTGGAGTTTGCGTTGTT+GGG 0.438726 3_4:-3123002 Msa0485430:CDS
TAGGTCAGGTAAATTCAAAT+GGG 0.442834 3_4:-3122672 Msa0485430:CDS
AGTAGCAGTAGGTTTAGGTC+AGG 0.443104 3_4:-3122686 Msa0485430:CDS
TTTATTTAAACTTACTCCAC+TGG 0.446826 3_4:+3121982 None:intergenic
AAGTAATCAGCAGCTTCCTT+TGG 0.448866 3_4:+3122388 None:intergenic
CAAGGCAATAAAGCTATTGA+TGG 0.449483 3_4:-3123400 Msa0485430:CDS
TGCAGTTTCTGATTCTTACT+AGG 0.451462 3_4:-3123539 Msa0485430:CDS
GATTGCGGTCCAGGTGAAGA+TGG 0.452924 3_4:-3122904 Msa0485430:CDS
ACGGAAGAGTCAAATTCATC+TGG 0.454205 3_4:+3125505 None:intergenic
AGTGTGGCCTCTGGACTGTT+GGG 0.456959 3_4:+3122091 None:intergenic
AGAGAGAAGAAAAGAAGAGA+TGG 0.459261 3_4:+3128225 None:intergenic
GATGAAAACATGGCTTGGTT+TGG 0.465948 3_4:+3128157 None:intergenic
ATTAGCACTTGACCCTAAAT+CGG 0.466599 3_4:+3123746 None:intergenic
CTCGCATGGCGCTGATTCAA+AGG 0.471008 3_4:-3122716 Msa0485430:CDS
CTCCTTATAATTTATAATTG+TGG 0.472860 3_4:-3123195 Msa0485430:CDS
TAATTGTGGCGTGCAGCACT+TGG 0.477869 3_4:-3123181 Msa0485430:CDS
ATTAAGATGAAAACATGGCT+TGG 0.478218 3_4:+3128152 None:intergenic
CACTGGGCAGGAACCTAATA+CGG 0.480274 3_4:+3121999 None:intergenic
GAAGATCAAATTCCAGGTAA+TGG 0.480624 3_4:-3122952 Msa0485430:CDS
TGGACCGCAATCATCCCCTT+TGG 0.482289 3_4:+3122915 None:intergenic
TTGAGGAAAACAATACTTTG+AGG 0.488148 3_4:+3122223 None:intergenic
TGGAGTTTGCGTTGTTGGGT+TGG 0.488841 3_4:-3122998 Msa0485430:CDS
CCCTTGCCTCCTCTGGCTTG+AGG 0.491163 3_4:+3122206 None:intergenic
TACAGAAATCGAAGGTTGAA+AGG 0.491648 3_4:+3128042 None:intergenic
GCAATTTCTCACAGTCGTCT+TGG 0.492027 3_4:+3122320 None:intergenic
GATTCCATGTGTCCATTACC+TGG 0.493805 3_4:+3122940 None:intergenic
ACCTGAAAACTGCGGTGCTA+AGG 0.495151 3_4:+3125552 None:intergenic
CTAAAACTGAGAGGTGGGCC+AGG 0.495933 3_4:+3121922 None:intergenic
ACTTGACCCTAAATCGGAAC+TGG 0.498812 3_4:+3123752 None:intergenic
TCCTCAAGCCAGAGGAGGCA+AGG 0.500133 3_4:-3122207 Msa0485430:CDS
GGTGCATTTATTATCAACTT+GGG 0.500962 3_4:-3123323 Msa0485430:CDS
ACCGCAATCATCCCCTTTGG+AGG 0.501986 3_4:+3122918 None:intergenic
TCGAGTTCCTTCAGAGAAGA+TGG 0.504101 3_4:-3123025 Msa0485430:CDS
GAGAGAAGAAAAGAAGAGAT+GGG 0.504253 3_4:+3128226 None:intergenic
GCAGCTGCAAGTGCCTTCAC+AGG 0.506606 3_4:+3122502 None:intergenic
AAGTGTGGCCTCTGGACTGT+TGG 0.507510 3_4:+3122090 None:intergenic
GCCCTAGAAAGATAATTTGA+AGG 0.508022 3_4:+3123618 None:intergenic
TGTCTGATGGCTTTAGAAAA+GGG 0.508915 3_4:-3123063 Msa0485430:CDS
TAATTGTTCGTCGCTGCGGA+AGG 0.510870 3_4:-3123259 Msa0485430:CDS
TATATATGTTACAAATGCTA+TGG 0.512096 3_4:+3121878 None:intergenic
AGAAGACCTAAAATTGAATG+AGG 0.513084 3_4:+3128086 None:intergenic
GACACATGGAATCCTCCAAA+GGG 0.513457 3_4:-3122930 Msa0485430:CDS
AAAGATTGATCCCATAAAAG+AGG 0.514143 3_4:-3125284 Msa0485430:intron
AAACATCGAGCTGCAAGTAT+TGG 0.514563 3_4:+3123147 None:intergenic
CGAGCTTTCCCTGACGTATG+TGG 0.514974 3_4:-3125638 Msa0485430:CDS
TGAAGTAATTTATAGCATCA+AGG 0.516031 3_4:-3126596 Msa0485430:intron
TCAAGAGGCACTGCCGAGCA+AGG 0.516316 3_4:+3122860 None:intergenic
GTGCGAATCAAGTTGACAAT+GGG 0.516578 3_4:-3123854 Msa0485430:CDS
GCCCTCTAATTCTTCTGTGG+AGG 0.516726 3_4:-3122785 Msa0485430:CDS
ACTGCGGTAAGTGTGGCCTC+TGG 0.518484 3_4:+3122082 None:intergenic
CCAGAACTTTCTCTGAAGAT+GGG 0.519413 3_4:-3123704 Msa0485430:CDS
TCGCGGTTGGTGGTTGAAGA+AGG 0.519971 3_4:+3127968 None:intergenic
GGAAGGAGAGTCGCGGTTGG+TGG 0.521129 3_4:+3127958 None:intergenic
CTGTAGAAGAGATAATCAAT+TGG 0.521353 3_4:-3122578 Msa0485430:CDS
TTAAACTTACTCCACTGGGC+AGG 0.522122 3_4:+3121987 None:intergenic
ACAGAAATCGAAGGTTGAAA+GGG 0.523361 3_4:+3128043 None:intergenic
AGATTTATCCTGTGAGAAAG+TGG 0.526008 3_4:+3123218 None:intergenic
GAAAACGCCGTCGTCGACTT+CGG 0.526520 3_4:+3127934 None:intergenic
TACAATATTTAGTGTTGCGA+CGG 0.531544 3_4:+3125486 None:intergenic
TGGGTTCACAAAATTTAACT+AGG 0.531972 3_4:-3123653 Msa0485430:CDS
CCTTCAGAGAAGATGGAGGT+TGG 0.536210 3_4:-3123018 Msa0485430:CDS
TAATTTGAAGGAGGGCCCGC+TGG 0.537167 3_4:+3123630 None:intergenic
AGGCCATGTTTATGCGGCAG+AGG 0.537177 3_4:-3122431 Msa0485430:CDS
TGACTATGCAAAGACGGTAT+CGG 0.537690 3_4:-3125326 Msa0485430:CDS
GGTCAGTTACAGGTGGAGAC+TGG 0.541629 3_4:-3121794 Msa0485430:three_prime_UTR
GCTCAAGTTGCAACTTTGCA+AGG 0.542130 3_4:-3123562 Msa0485430:CDS
TTAGGATGTGTTGACTTACC+TGG 0.542332 3_4:-3123898 Msa0485430:intron
ACAAAATTTAACTAGGCCAG+CGG 0.543822 3_4:-3123646 Msa0485430:CDS
CTGGAAAGAGCATTTGGTGT+TGG 0.545410 3_4:-3123879 Msa0485430:CDS
CATGGTTATATCATTGTGCC+TGG 0.547330 3_4:-3121940 Msa0485430:three_prime_UTR
AAAGTTGCTTTGGGGTCCAA+AGG 0.549173 3_4:-3125583 Msa0485430:CDS
CTTGCCCTCTAATTCTTCTG+TGG 0.550070 3_4:-3122788 Msa0485430:CDS
TGGGGACACAAAAGAACAGA+AGG 0.552001 3_4:-3122653 Msa0485430:CDS
TAATTTAGCATATGTGGAGC+TGG 0.553226 3_4:-3122536 Msa0485430:CDS
TAACTAATTGTTCGTCGCTG+CGG 0.554213 3_4:-3123263 Msa0485430:CDS
TTATCATATTATTTGTCTGG+AGG 0.555300 3_4:-3122367 Msa0485430:CDS
CCTCAAGCCAGAGGAGGCAA+GGG 0.555731 3_4:-3122206 Msa0485430:CDS
TCTACAAGCAGCCCCTCTTG+TGG 0.557200 3_4:-3123104 Msa0485430:CDS
ACATATATAAGTTCAATTCA+GGG 0.557754 3_4:-3121864 Msa0485430:three_prime_UTR
ATCAGCAGCAGATTCACTAA+TGG 0.559636 3_4:+3123779 None:intergenic
GTCCTCATTCTTCTTCTCGA+AGG 0.559829 3_4:-3123289 Msa0485430:CDS
TCCCTGACGTATGTGGATCA+AGG 0.561251 3_4:-3125631 Msa0485430:CDS
ATTGCGGTCCAGGTGAAGAT+GGG 0.563635 3_4:-3122903 Msa0485430:CDS
TTCAGCCGCCCATCTTCACC+TGG 0.564293 3_4:+3122895 None:intergenic
TTGATGCATCATGGCATGCA+AGG 0.565171 3_4:+3125112 None:intergenic
AGCCAATATATTGGTTACAC+AGG 0.567649 3_4:-3122128 Msa0485430:CDS
CTTCAAACGATTTGTACTGT+AGG 0.570669 3_4:+3122816 None:intergenic
ATTGCGGAATTCTTCCGAGA+TGG 0.572442 3_4:-3126643 Msa0485430:CDS
ACTCTCAGAATGCTGTCTGA+TGG 0.572565 3_4:-3123076 Msa0485430:CDS
CCAATTCCTCGATCTCGCTA+TGG 0.573008 3_4:-3128017 Msa0485430:exon
CAAAATTTAACTAGGCCAGC+GGG 0.573602 3_4:-3123645 Msa0485430:CDS
AGTTATCGATGTCCCTTGCT+CGG 0.573739 3_4:-3122873 Msa0485430:CDS
TCTTTGCATAGTCATGAAGA+TGG 0.574380 3_4:+3125335 None:intergenic
AACATAAACTGCGGTAAGTG+TGG 0.574544 3_4:+3122075 None:intergenic
GAGCCTCTGCCGCATAAACA+TGG 0.574948 3_4:+3122428 None:intergenic
CCGTCGTCGACTTCGGCGGA+AGG 0.575192 3_4:+3127941 None:intergenic
TATGTTACAAATGCTATGGA+AGG 0.577330 3_4:+3121882 None:intergenic
AAAGCTGGCCACTTTCTCAC+AGG 0.580528 3_4:-3123226 Msa0485430:CDS
TACACCTCAAATTTCAAAGG+TGG 0.581359 3_4:+3121758 None:intergenic
AGCAAAACGAGAAGTCAAGC+TGG 0.582165 3_4:-3123505 Msa0485430:CDS
CTTCATGAGTGTTGTATGCA+TGG 0.582593 3_4:-3121958 Msa0485430:exon
GCAGATTCACTAATGGTGAC+AGG 0.584111 3_4:+3123786 None:intergenic
CCAACCTCCATCTTCTCTGA+AGG 0.584845 3_4:+3123018 None:intergenic
AGCGTCTTTGGCAAGAGCGA+CGG 0.587657 3_4:+3127904 None:intergenic
AGATTTCAAAATCAGAGCCA+TGG 0.588061 3_4:+3123452 None:intergenic
GACCCTAAATCGGAACTGGA+TGG 0.589437 3_4:+3123756 None:intergenic
TTGCTTGCTGAATAGACCAA+AGG 0.592584 3_4:-3122404 Msa0485430:CDS
ATCTACACCTCAAATTTCAA+AGG 0.594253 3_4:+3121755 None:intergenic
AGAAGAATTCTTCGCAGCAG+TGG 0.594658 3_4:+3122255 None:intergenic
AAAATGGAGGCAACTTGTTG+TGG 0.594821 3_4:-3122974 Msa0485430:CDS
GCTAACTAAAACTGAGAGGT+GGG 0.595541 3_4:+3121917 None:intergenic
GAAGACCTAAAATTGAATGA+GGG 0.595870 3_4:+3128087 None:intergenic
GGCGGAAGGAGAGTCGCGGT+TGG 0.596914 3_4:+3127955 None:intergenic
TCAATAGCTTTATTGCCTTG+CGG 0.597488 3_4:+3123403 None:intergenic
ACTTCATAATATAGCAATTG+CGG 0.598887 3_4:-3126659 Msa0485430:CDS
TGGGATCAGAACAACCATCT+CGG 0.604284 3_4:+3126629 None:intergenic
GCAAGTGAAGAGCATTCAAG+AGG 0.607592 3_4:+3122845 None:intergenic
GCGGTCCAGGTGAAGATGGG+CGG 0.607734 3_4:-3122900 Msa0485430:CDS
AGTTTGGCTAGAGCTTCTTG+TGG 0.608455 3_4:+3122034 None:intergenic
CAAGAGGCACTGCCGAGCAA+GGG 0.610077 3_4:+3122861 None:intergenic
TTATTTAAACTTACTCCACT+GGG 0.610575 3_4:+3121983 None:intergenic
TTTATAATTCTCAAATTTAG+GGG 0.612048 3_4:-3121815 Msa0485430:three_prime_UTR
TAGAAAGATAATTTGAAGGA+GGG 0.612465 3_4:+3123622 None:intergenic
CTGAGAGTCGGAGCCACAAG+AGG 0.612920 3_4:+3123091 None:intergenic
AGTGCGAATCAAGTTGACAA+TGG 0.613308 3_4:-3123855 Msa0485430:CDS
AGTTAATTAAGATGAAAACA+TGG 0.613400 3_4:+3128147 None:intergenic
TGAGAGTCGGAGCCACAAGA+GGG 0.614527 3_4:+3123092 None:intergenic
TGCTAACTAAAACTGAGAGG+TGG 0.615670 3_4:+3121916 None:intergenic
GTGAGAAATTGCAAGTAGAG+AGG 0.617140 3_4:-3122309 Msa0485430:CDS
CTTTCTAGGCCATGTTTATG+CGG 0.617146 3_4:-3122437 Msa0485430:CDS
TCCTTGATCCACATACGTCA+GGG 0.618812 3_4:+3125630 None:intergenic
TCTTCATGACTATGCAAAGA+CGG 0.619165 3_4:-3125332 Msa0485430:CDS
CTAGAAAGATAATTTGAAGG+AGG 0.619288 3_4:+3123621 None:intergenic
AACGCCGTCGTCGACTTCGG+CGG 0.619375 3_4:+3127937 None:intergenic
GGACACATGGAATCCTCCAA+AGG 0.619856 3_4:-3122931 Msa0485430:CDS
GGCGTGCAGCACTTGGCTTG+TGG 0.620925 3_4:-3123174 Msa0485430:CDS
GACATCTTCATAATACGAGA+GGG 0.621685 3_4:+3122600 None:intergenic
TCAGACAGCATTCTGAGAGT+CGG 0.626085 3_4:+3123079 None:intergenic
GCTGTAATGTCTGCAATGCA+GGG 0.627280 3_4:-3122163 Msa0485430:CDS
AAACAAACCTAACGATCCAA+AGG 0.627463 3_4:-3127819 Msa0485430:intron
ACACCTCAAATTTCAAAGGT+GGG 0.628313 3_4:+3121759 None:intergenic
ATTTAGGGGTCAGTTACAGG+TGG 0.628386 3_4:-3121801 Msa0485430:three_prime_UTR
GGAATTGGACAATCCTGTGA+AGG 0.628752 3_4:-3122515 Msa0485430:CDS
TCCTCCAAAGGGGATGATTG+CGG 0.629680 3_4:-3122919 Msa0485430:CDS
GAGATTCCATAGCGAGATCG+AGG 0.630763 3_4:+3128011 None:intergenic
TGCCTTCGAGAAGAAGAATG+AGG 0.637009 3_4:+3123287 None:intergenic
TGCTCGTGGTAACCACCGCA+AGG 0.638172 3_4:-3123418 Msa0485430:CDS
AATTCCAGGTAATGGACACA+TGG 0.638460 3_4:-3122944 Msa0485430:CDS
AGGTCAGGTAAATTCAAATG+GGG 0.643683 3_4:-3122671 Msa0485430:CDS
ATAGCTTTATTGCCTTGCGG+TGG 0.644670 3_4:+3123406 None:intergenic
AATTGGAATACAGAAATCGA+AGG 0.647423 3_4:+3128034 None:intergenic
TCTCAGCTTGAATATGCTCG+TGG 0.650885 3_4:-3123432 Msa0485430:CDS
GAATTTGAAGACGTAAATGG+AGG 0.652933 3_4:-3122280 Msa0485430:CDS
CTGGCGATGAACATTGCACG+TGG 0.654787 3_4:-3123486 Msa0485430:CDS
TCCTCCACAGAAGAATTAGA+GGG 0.662228 3_4:+3122784 None:intergenic
CCTTCCGCCGAAGTCGACGA+CGG 0.663917 3_4:-3127941 Msa0485430:CDS
AGACATCTTCATAATACGAG+AGG 0.664656 3_4:+3122599 None:intergenic
ACGTGGAAGAGATTCATCCA+TGG 0.672916 3_4:-3123469 Msa0485430:CDS
CATATTGCCCAACAGTCCAG+AGG 0.674235 3_4:-3122098 Msa0485430:CDS
CTTCGGCGGAAGGAGAGTCG+CGG 0.674763 3_4:+3127951 None:intergenic
ATCAAGTAATAGAACAGACA+CGG 0.680364 3_4:-3123376 Msa0485430:CDS
CGTATTAGGTTCCTGCCCAG+TGG 0.693267 3_4:-3121998 Msa0485430:CDS
GACACAAAAGAACAGAAGGG+AGG 0.694944 3_4:-3122649 Msa0485430:CDS
TCGGAAATAAAGTTGCTTTG+GGG 0.697016 3_4:-3125591 Msa0485430:CDS
ACCTGCTAACTAAAACTGAG+AGG 0.697545 3_4:+3121913 None:intergenic
GAGAGTCGGAGCCACAAGAG+GGG 0.698061 3_4:+3123093 None:intergenic
GGAGAGCTAGTTAACAACGT+CGG 0.703408 3_4:-3125610 Msa0485430:CDS
AGTTCCTTCAGAGAAGATGG+AGG 0.705068 3_4:-3123022 Msa0485430:CDS
GGGGACACAAAAGAACAGAA+GGG 0.706066 3_4:-3122652 Msa0485430:CDS
CAAGAGATCAACATAAACTG+CGG 0.708853 3_4:+3122066 None:intergenic
ACACATGGAATCCTCCAAAG+GGG 0.737500 3_4:-3122929 Msa0485430:CDS
CTATTTACACCTGAAAACTG+CGG 0.737778 3_4:+3125544 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAGAATTTTAAATGTTT+TGG - chr3_4:3122760-3122779 Msa0485430:CDS 10.0%
!!! TTTAGAATTTTAAATGTTTT+GGG - chr3_4:3122761-3122780 Msa0485430:CDS 10.0%
!!! TTTCTTTAAAAATTATAATG+GGG - chr3_4:3124664-3124683 Msa0485430:intron 10.0%
!!! TTTTTTTTTTTTTTTTTGAG+GGG - chr3_4:3125444-3125463 Msa0485430:intron 10.0%
!!! TTTTTATAATTCTCAAATTT+AGG - chr3_4:3128075-3128094 Msa0485430:five_prime_UTR 10.0%
!!! TTTTATAATTCTCAAATTTA+GGG - chr3_4:3128076-3128095 Msa0485430:five_prime_UTR 10.0%
!!! GAAAGAAAATTTTATTAGAT+CGG - chr3_4:3122451-3122470 Msa0485430:CDS 15.0%
!!! ACTTATTCATGTAAATATTT+TGG - chr3_4:3123562-3123581 Msa0485430:CDS 15.0%
!!! CTTATTCATGTAAATATTTT+GGG - chr3_4:3123563-3123582 Msa0485430:CDS 15.0%
!!! TTATTCATGTAAATATTTTG+GGG - chr3_4:3123564-3123583 Msa0485430:CDS 15.0%
!! GAAAGATAATATTATAAGTT+AGG - chr3_4:3123922-3123941 Msa0485430:intron 15.0%
!! AGTTAATTGAAATTGATATA+AGG + chr3_4:3124445-3124464 None:intergenic 15.0%
!!! TTCTTTAAAAATTATAATGG+GGG - chr3_4:3124665-3124684 Msa0485430:intron 15.0%
!!! TTTATTTTTTAATGATTGCA+AGG - chr3_4:3124844-3124863 Msa0485430:intron 15.0%
!! TACAATTAGAGAATTTAAAA+AGG + chr3_4:3125942-3125961 None:intergenic 15.0%
!! TTTATAATTCTCAAATTTAG+GGG - chr3_4:3128077-3128096 Msa0485430:five_prime_UTR 15.0%
!! AGTTAATTAAGATGAAAACA+TGG + chr3_4:3121748-3121767 None:intergenic 20.0%
!!! TTGAGTTTATTTTCTTGATA+AGG - chr3_4:3122537-3122556 Msa0485430:CDS 20.0%
!!! TGAGTTTATTTTCTTGATAA+GGG - chr3_4:3122538-3122557 Msa0485430:CDS 20.0%
!! ATTGAGTAATGATAATATCA+TGG - chr3_4:3122684-3122703 Msa0485430:CDS 20.0%
!! TGAATCATTATTTGTTTGTT+TGG - chr3_4:3122876-3122895 Msa0485430:CDS 20.0%
!!! ATTCAGTATGTGATTTATTT+TGG - chr3_4:3123000-3123019 Msa0485430:CDS 20.0%
!!! TTCAGTATGTGATTTATTTT+GGG - chr3_4:3123001-3123020 Msa0485430:CDS 20.0%
!!! TTCAGTTTTCTAATACATAA+CGG + chr3_4:3123431-3123450 None:intergenic 20.0%
!!! ACTTTTGTAAACAAAAAGTT+TGG - chr3_4:3123519-3123538 Msa0485430:CDS 20.0%
!! TTTACATGAATAAGTATCAA+AGG + chr3_4:3123557-3123576 None:intergenic 20.0%
!! GAAACTATCAATAACAAATA+AGG + chr3_4:3123655-3123674 None:intergenic 20.0%
!!! GTATTCTTTTATTCAAATGA+AGG + chr3_4:3123706-3123725 None:intergenic 20.0%
!! ACTTGTAAATATTATCTTTC+AGG + chr3_4:3123849-3123868 None:intergenic 20.0%
!! ATTTACAAGTTAAGAAATAC+TGG - chr3_4:3123859-3123878 Msa0485430:CDS 20.0%
!! TATTATAAGTTAGGAAATAC+TGG - chr3_4:3123931-3123950 Msa0485430:intron 20.0%
!! TGAATATAAAACGTATTTGA+AGG + chr3_4:3124115-3124134 None:intergenic 20.0%
!!! TACTTATCCTTTTTTTCTTT+GGG - chr3_4:3124209-3124228 Msa0485430:intron 20.0%
!! TACGATAATATTATATTAGC+TGG - chr3_4:3124821-3124840 Msa0485430:intron 20.0%
!!! TTTCTTACTTCTTTTATTAG+CGG - chr3_4:3124925-3124944 Msa0485430:intron 20.0%
!! GAATAAAACAGTAAAGTAAA+TGG + chr3_4:3125591-3125610 None:intergenic 20.0%
!! TTTAATCACATTAATAGAGA+TGG + chr3_4:3125739-3125758 None:intergenic 20.0%
!!! TCTTAATTTTGTTAGTCAAT+GGG - chr3_4:3125895-3125914 Msa0485430:intron 20.0%
!! CTCCTTATAATTTATAATTG+TGG - chr3_4:3126697-3126716 Msa0485430:intron 20.0%
!! TACTTATCATATTATTTGTC+TGG - chr3_4:3127522-3127541 Msa0485430:intron 20.0%
!! TATATATGTTACAAATGCTA+TGG + chr3_4:3128017-3128036 None:intergenic 20.0%
!! AACATATATAAGTTCAATTC+AGG - chr3_4:3128027-3128046 Msa0485430:five_prime_UTR 20.0%
!! ACATATATAAGTTCAATTCA+GGG - chr3_4:3128028-3128047 Msa0485430:five_prime_UTR 20.0%
!!! TTGTGTTTTTTATTTTCTAG+AGG - chr3_4:3128170-3128189 Msa0485430:five_prime_UTR 20.0%
!! ATATTGAGAAAACTAAAAAG+TGG - chr3_4:3128230-3128249 Msa0485430:five_prime_UTR 20.0%
! TGAATTAGATTGAATACCTT+TGG + chr3_4:3122092-3122111 None:intergenic 25.0%
!!! ATTTTGTTATTTTCTTCGTG+AGG - chr3_4:3122185-3122204 Msa0485430:CDS 25.0%
!! TAGAAAGTATGTGAATTAGT+TGG - chr3_4:3122339-3122358 Msa0485430:CDS 25.0%
! ATCTTTCTGTATTATTACGA+CGG - chr3_4:3122817-3122836 Msa0485430:CDS 25.0%
!!! TCAGTATGTGATTTATTTTG+GGG - chr3_4:3123002-3123021 Msa0485430:CDS 25.0%
! AGACTTAGAAAAAAGAATTG+TGG + chr3_4:3123190-3123209 None:intergenic 25.0%
! TTGAAGTTCCTATATATTTC+AGG - chr3_4:3123209-3123228 Msa0485430:CDS 25.0%
!! ATGAAGTACCTGAAATATAT+AGG + chr3_4:3123220-3123239 None:intergenic 25.0%
! ACTTCATAATATAGCAATTG+CGG - chr3_4:3123233-3123252 Msa0485430:CDS 25.0%
!! ATTACTTCAAGCAACTTTTT+GGG + chr3_4:3123285-3123304 None:intergenic 25.0%
!! AATTACTTCAAGCAACTTTT+TGG + chr3_4:3123286-3123305 None:intergenic 25.0%
! TGAAGTAATTTATAGCATCA+AGG - chr3_4:3123296-3123315 Msa0485430:CDS 25.0%
!!! TAGCTTTAGTTTTTCATGTT+TGG - chr3_4:3123375-3123394 Msa0485430:CDS 25.0%
!! TTTTTCATGTTTGGTATTTG+AGG - chr3_4:3123384-3123403 Msa0485430:CDS 25.0%
! AACTCACGCATTAAAATAAT+GGG + chr3_4:3123677-3123696 None:intergenic 25.0%
! AAACTCACGCATTAAAATAA+TGG + chr3_4:3123678-3123697 None:intergenic 25.0%
!!! ATTATTTTAATGCGTGAGTT+TGG - chr3_4:3123677-3123696 Msa0485430:CDS 25.0%
!!! CTACTTATCCTTTTTTTCTT+TGG - chr3_4:3124208-3124227 Msa0485430:intron 25.0%
! ATAAACTCCCAAAGAAAAAA+AGG + chr3_4:3124219-3124238 None:intergenic 25.0%
! GAGTTTATTCAGAGAAAATA+TGG - chr3_4:3124231-3124250 Msa0485430:intron 25.0%
!! ATATACCATACCTCTTTTAT+GGG + chr3_4:3124621-3124640 None:intergenic 25.0%
!! TATATACCATACCTCTTTTA+TGG + chr3_4:3124622-3124641 None:intergenic 25.0%
!! TTCTTACTTCTTTTATTAGC+GGG - chr3_4:3124926-3124945 Msa0485430:intron 25.0%
! ATAAGGGAGAAGTTTAAAAA+GGG - chr3_4:3125395-3125414 Msa0485430:intron 25.0%
!! TTGAAATTAGCAATTGGTTT+GGG - chr3_4:3125485-3125504 Msa0485430:intron 25.0%
! ATAATAAACAAGGATATACC+AGG - chr3_4:3125687-3125706 Msa0485430:intron 25.0%
! AATATACAGAATATAGATCC+TGG + chr3_4:3125708-3125727 None:intergenic 25.0%
!!! TGAAAGTTTGTTGTAGAATT+GGG - chr3_4:3125760-3125779 Msa0485430:intron 25.0%
!! GTCTTAATTTTGTTAGTCAA+TGG - chr3_4:3125894-3125913 Msa0485430:intron 25.0%
! TAGAAAGATAATTTGAAGGA+GGG + chr3_4:3126273-3126292 None:intergenic 25.0%
! TCCTTCAAATTATCTTTCTA+GGG - chr3_4:3126273-3126292 Msa0485430:intron 25.0%
!! AGCATTTTTAACAACAATCT+TGG - chr3_4:3126547-3126566 Msa0485430:intron 25.0%
!! GCATTTTTAACAACAATCTT+GGG - chr3_4:3126548-3126567 Msa0485430:intron 25.0%
! CGCCACAATTATAAATTATA+AGG + chr3_4:3126702-3126721 None:intergenic 25.0%
! TTACGACTTAAATTCTTTGA+AGG + chr3_4:3127153-3127172 None:intergenic 25.0%
! TTATCATATTATTTGTCTGG+AGG - chr3_4:3127525-3127544 Msa0485430:intron 25.0%
! TTATTTAAACTTACTCCACT+GGG + chr3_4:3127912-3127931 None:intergenic 25.0%
! TTTATTTAAACTTACTCCAC+TGG + chr3_4:3127913-3127932 None:intergenic 25.0%
!! TAAAAAGTGGATAGTTGTTT+TGG - chr3_4:3128243-3128262 Msa0485430:five_prime_UTR 25.0%
ATTAAGATGAAAACATGGCT+TGG + chr3_4:3121743-3121762 None:intergenic 30.0%
! ACTTTCCCTCATTCAATTTT+AGG - chr3_4:3121800-3121819 Msa0485430:three_prime_UTR 30.0%
GAAGACCTAAAATTGAATGA+GGG + chr3_4:3121808-3121827 None:intergenic 30.0%
AGAAGACCTAAAATTGAATG+AGG + chr3_4:3121809-3121828 None:intergenic 30.0%
AATTGGAATACAGAAATCGA+AGG + chr3_4:3121861-3121880 None:intergenic 30.0%
GAAAACGAAATCAAAGCAAT+CGG + chr3_4:3122122-3122141 None:intergenic 30.0%
CATCTTAATTGCTTCGTATT+AGG - chr3_4:3122141-3122160 Msa0485430:CDS 30.0%
TTCCAATAGTTGTGCTAAAA+GGG - chr3_4:3122509-3122528 Msa0485430:CDS 30.0%
! TAAGGGCAATTTTTATGAGT+TGG - chr3_4:3122555-3122574 Msa0485430:CDS 30.0%
!! CATTGATGCTACTTGATTTT+CGG - chr3_4:3122597-3122616 Msa0485430:CDS 30.0%
TTTGTATACATGACAGTTAC+TGG - chr3_4:3122624-3122643 Msa0485430:CDS 30.0%
!!! GTGTTACTTTTCTTCATGAA+TGG - chr3_4:3122712-3122731 Msa0485430:CDS 30.0%
!!! TATGTGATTTATTTTGGGGA+TGG - chr3_4:3123006-3123025 Msa0485430:CDS 30.0%
!!! GTATGTTACTTTTACACGTA+TGG - chr3_4:3123318-3123337 Msa0485430:CDS 30.0%
ATTAAAATGAAGGTAGACCT+AGG - chr3_4:3123485-3123504 Msa0485430:CDS 30.0%
AAAAGTCGAAATAATGACCT+AGG + chr3_4:3123505-3123524 None:intergenic 30.0%
ATGAATAAGTATCAAAGGCT+CGG + chr3_4:3123552-3123571 None:intergenic 30.0%
TTGCCAATTGGGAAATTAAT+TGG + chr3_4:3123590-3123609 None:intergenic 30.0%
TTAATTTCCCAATTGGCAAA+TGG - chr3_4:3123591-3123610 Msa0485430:CDS 30.0%
! TGAGTGTTTTCAATTGTTGA+AGG - chr3_4:3123629-3123648 Msa0485430:CDS 30.0%
TTTGTTCAAATTCCTTCTTC+TGG - chr3_4:3123778-3123797 Msa0485430:CDS 30.0%
TTGTTCAAATTCCTTCTTCT+GGG - chr3_4:3123779-3123798 Msa0485430:CDS 30.0%
TCTATTGGTATTCTTAAAGC+AGG - chr3_4:3123804-3123823 Msa0485430:CDS 30.0%
TACAAGTTAAGAAATACTGG+TGG - chr3_4:3123862-3123881 Msa0485430:CDS 30.0%
ACAAGTTAAGAAATACTGGT+GGG - chr3_4:3123863-3123882 Msa0485430:CDS 30.0%
AATGTTTACCAAGTAAAAGC+TGG - chr3_4:3123985-3124004 Msa0485430:intron 30.0%
TTATGTTCTCTCTTCTGTTA+TGG - chr3_4:3124055-3124074 Msa0485430:intron 30.0%
TATTCAACTTAATGCTGTTC+AGG - chr3_4:3124129-3124148 Msa0485430:intron 30.0%
TACAATATTTAGTGTTGCGA+CGG + chr3_4:3124409-3124428 None:intergenic 30.0%
!! TTTGTTATTTCAACCTCTCT+AGG - chr3_4:3124521-3124540 Msa0485430:intron 30.0%
!!! GGATCAATCTTTTGAAATAG+GGG + chr3_4:3124600-3124619 None:intergenic 30.0%
!!! GGGATCAATCTTTTGAAATA+GGG + chr3_4:3124601-3124620 None:intergenic 30.0%
!!! TGGGATCAATCTTTTGAAAT+AGG + chr3_4:3124602-3124621 None:intergenic 30.0%
AAAGATTGATCCCATAAAAG+AGG - chr3_4:3124608-3124627 Msa0485430:intron 30.0%
!! AATTATAATGGGGGTGTTAA+TGG - chr3_4:3124674-3124693 Msa0485430:intron 30.0%
! TCTTACTTCTTTTATTAGCG+GGG - chr3_4:3124927-3124946 Msa0485430:intron 30.0%
! GCATAAATTGATTTCTCTCT+CGG + chr3_4:3125210-3125229 None:intergenic 30.0%
TGCTGTATGTGTTATATCTA+AGG - chr3_4:3125321-3125340 Msa0485430:CDS 30.0%
GCTGTATGTGTTATATCTAA+GGG - chr3_4:3125322-3125341 Msa0485430:CDS 30.0%
AAAATGTGCTGCAATTGATA+AGG - chr3_4:3125378-3125397 Msa0485430:intron 30.0%
AAATGTGCTGCAATTGATAA+GGG - chr3_4:3125379-3125398 Msa0485430:intron 30.0%
GATAAGGGAGAAGTTTAAAA+AGG - chr3_4:3125394-3125413 Msa0485430:intron 30.0%
GCTAACTTGAAATTAGCAAT+TGG - chr3_4:3125479-3125498 Msa0485430:intron 30.0%
CTTGAAATTAGCAATTGGTT+TGG - chr3_4:3125484-3125503 Msa0485430:intron 30.0%
! TTGTTACTGATCATTTTGCA+AGG - chr3_4:3125545-3125564 Msa0485430:CDS 30.0%
!! GTTTTATTCATCTTGTAGAG+AGG - chr3_4:3125602-3125621 Msa0485430:CDS 30.0%
TCCTCTATTATCATTACTTC+TGG - chr3_4:3125630-3125649 Msa0485430:CDS 30.0%
CCTCTATTATCATTACTTCT+GGG - chr3_4:3125631-3125650 Msa0485430:CDS 30.0%
! GTTTTCTTCTATTCCGATTT+TGG - chr3_4:3125653-3125672 Msa0485430:intron 30.0%
ACCTAACAGCATAATAAACA+AGG - chr3_4:3125677-3125696 Msa0485430:intron 30.0%
! TCCTTGTTTATTATGCTGTT+AGG + chr3_4:3125681-3125700 None:intergenic 30.0%
!! CTGAAAGTTTGTTGTAGAAT+TGG - chr3_4:3125759-3125778 Msa0485430:intron 30.0%
! TGTAAAACTTTCTTGATAGC+CGG - chr3_4:3125820-3125839 Msa0485430:intron 30.0%
TGGGTTCACAAAATTTAACT+AGG - chr3_4:3126239-3126258 Msa0485430:intron 30.0%
CTAGAAAGATAATTTGAAGG+AGG + chr3_4:3126274-3126293 None:intergenic 30.0%
CTCCTTCAAATTATCTTTCT+AGG - chr3_4:3126272-3126291 Msa0485430:intron 30.0%
!! AAATTATCTTTCTAGGGCTT+TGG - chr3_4:3126279-3126298 Msa0485430:intron 30.0%
ATCAAGTAATAGAACAGACA+CGG - chr3_4:3126516-3126535 Msa0485430:intron 30.0%
GGTGCATTTATTATCAACTT+GGG - chr3_4:3126569-3126588 Msa0485430:intron 30.0%
TTAGGTCAGGTAAATTCAAA+TGG - chr3_4:3127219-3127238 Msa0485430:intron 30.0%
TAGGTCAGGTAAATTCAAAT+GGG - chr3_4:3127220-3127239 Msa0485430:intron 30.0%
CTGTAGAAGAGATAATCAAT+TGG - chr3_4:3127314-3127333 Msa0485430:intron 30.0%
TCTAGCTAATTTAGCATATG+TGG - chr3_4:3127350-3127369 Msa0485430:intron 30.0%
!! ATGTAAATTCTGGAACATTC+TGG + chr3_4:3127435-3127454 None:intergenic 30.0%
TCCAGAATTTACATCTTTCT+AGG - chr3_4:3127441-3127460 Msa0485430:intron 30.0%
GTTGAATTTGAAGACGTAAA+TGG - chr3_4:3127609-3127628 Msa0485430:intron 30.0%
TTGAGGAAAACAATACTTTG+AGG + chr3_4:3127672-3127691 None:intergenic 30.0%
ACTTGAGAAAGCCAATATAT+TGG - chr3_4:3127755-3127774 Msa0485430:intron 30.0%
TAAAAAGTTGTAGCCGTATT+AGG - chr3_4:3127880-3127899 Msa0485430:CDS 30.0%
TATGTTACAAATGCTATGGA+AGG + chr3_4:3128013-3128032 None:intergenic 30.0%
ATCTACACCTCAAATTTCAA+AGG + chr3_4:3128140-3128159 None:intergenic 30.0%
GAGAGAAGAAAAGAAGAGAT+GGG + chr3_4:3121669-3121688 None:intergenic 35.0%
AGAGAGAAGAAAAGAAGAGA+TGG + chr3_4:3121670-3121689 None:intergenic 35.0%
! TCTTTTCTTCTCTCTATCCT+TGG - chr3_4:3121675-3121694 Msa0485430:three_prime_UTR 35.0%
CTTGGCAAAAACAACACAAA+GGG - chr3_4:3121693-3121712 Msa0485430:three_prime_UTR 35.0%
ACAGAAATCGAAGGTTGAAA+GGG + chr3_4:3121852-3121871 None:intergenic 35.0%
TACAGAAATCGAAGGTTGAA+AGG + chr3_4:3121853-3121872 None:intergenic 35.0%
!! ATAATGCAAAGAAGCGTCTT+TGG + chr3_4:3122003-3122022 None:intergenic 35.0%
GCTTCTTTGCATTATCAATC+TGG - chr3_4:3122008-3122027 Msa0485430:CDS 35.0%
AAACAAACCTAACGATCCAA+AGG - chr3_4:3122073-3122092 Msa0485430:CDS 35.0%
TTGAATACCTTTGGATCGTT+AGG + chr3_4:3122083-3122102 None:intergenic 35.0%
GTTACTTACATCACATCACA+TGG + chr3_4:3122423-3122442 None:intergenic 35.0%
GTGATGTAAGTAACGAGTAT+CGG - chr3_4:3122429-3122448 Msa0485430:CDS 35.0%
GTTCCAATAGTTGTGCTAAA+AGG - chr3_4:3122508-3122527 Msa0485430:CDS 35.0%
TCCAATAGTTGTGCTAAAAG+GGG - chr3_4:3122510-3122529 Msa0485430:CDS 35.0%
GCTCTTAACAAGCTTGAAAA+TGG + chr3_4:3123080-3123099 None:intergenic 35.0%
!! TTCAAGCTTGTTAAGAGCAA+AGG - chr3_4:3123082-3123101 Msa0485430:CDS 35.0%
! AGAGCAAAGGACAATGATTT+TGG - chr3_4:3123095-3123114 Msa0485430:CDS 35.0%
!! CAAAGGACAATGATTTTGGT+GGG - chr3_4:3123099-3123118 Msa0485430:CDS 35.0%
AAGATAACTCAAGGCTTGAT+GGG + chr3_4:3123142-3123161 None:intergenic 35.0%
AAAGATAACTCAAGGCTTGA+TGG + chr3_4:3123143-3123162 None:intergenic 35.0%
CACAACGAAAAGATAACTCA+AGG + chr3_4:3123151-3123170 None:intergenic 35.0%
CGACAGCAAGATTAAAATGA+AGG - chr3_4:3123475-3123494 Msa0485430:CDS 35.0%
CAAGTTAAGAAATACTGGTG+GGG - chr3_4:3123864-3123883 Msa0485430:CDS 35.0%
CATAAAAGTCTACATGCTGT+AGG + chr3_4:3124040-3124059 None:intergenic 35.0%
! GTCGGAAATAAAGTTGCTTT+GGG - chr3_4:3124300-3124319 Msa0485430:intron 35.0%
! TCGGAAATAAAGTTGCTTTG+GGG - chr3_4:3124301-3124320 Msa0485430:intron 35.0%
CTATTTACACCTGAAAACTG+CGG + chr3_4:3124351-3124370 None:intergenic 35.0%
TCTTTGCATAGTCATGAAGA+TGG + chr3_4:3124560-3124579 None:intergenic 35.0%
TCTTCATGACTATGCAAAGA+CGG - chr3_4:3124560-3124579 Msa0485430:intron 35.0%
TTGATCCCATAAAAGAGGTA+TGG - chr3_4:3124613-3124632 Msa0485430:intron 35.0%
!! AGAAGAATTTGAGTTGCAAC+AGG + chr3_4:3125043-3125062 None:intergenic 35.0%
!! GATTGGCTGAATGTTTTCAT+TGG - chr3_4:3125084-3125103 Msa0485430:intron 35.0%
TTGAGATTTGTGCATTCTCA+TGG - chr3_4:3125251-3125270 Msa0485430:intron 35.0%
TGAGATTTGTGCATTCTCAT+GGG - chr3_4:3125252-3125271 Msa0485430:intron 35.0%
GGGTGAGATACATAAATGTT+GGG - chr3_4:3125275-3125294 Msa0485430:intron 35.0%
GTGTTATATCTAAGGGAGAT+AGG - chr3_4:3125329-3125348 Msa0485430:CDS 35.0%
TATATCTAAGGGAGATAGGA+TGG - chr3_4:3125333-3125352 Msa0485430:CDS 35.0%
ATATCTAAGGGAGATAGGAT+GGG - chr3_4:3125334-3125353 Msa0485430:CDS 35.0%
!! AATTGCAGCACATTTTGAGT+GGG + chr3_4:3125374-3125393 None:intergenic 35.0%
!!! TTTTTTGAGGGGATAACTGA+AGG - chr3_4:3125455-3125474 Msa0485430:intron 35.0%
!! TTTTTGAGGGGATAACTGAA+GGG - chr3_4:3125456-3125475 Msa0485430:intron 35.0%
!! AAATTAGCAATTGGTTTGGG+TGG - chr3_4:3125488-3125507 Msa0485430:intron 35.0%
CCCAGAAGTAATGATAATAG+AGG + chr3_4:3125634-3125653 None:intergenic 35.0%
ATGCTGTTAGGTACCAAAAT+CGG + chr3_4:3125669-3125688 None:intergenic 35.0%
ATGAGTGCAAGAATTTATGC+CGG + chr3_4:3125842-3125861 None:intergenic 35.0%
ATTAGCACTTGACCCTAAAT+CGG + chr3_4:3126149-3126168 None:intergenic 35.0%
! TGATTATGCAGCCATGTTTT+TGG - chr3_4:3126213-3126232 Msa0485430:intron 35.0%
TGAACCCATATCCAAAAACA+TGG + chr3_4:3126227-3126246 None:intergenic 35.0%
ACAAAATTTAACTAGGCCAG+CGG - chr3_4:3126246-3126265 Msa0485430:intron 35.0%
GCCCTAGAAAGATAATTTGA+AGG + chr3_4:3126277-3126296 None:intergenic 35.0%
TGCAGTTTCTGATTCTTACT+AGG - chr3_4:3126353-3126372 Msa0485430:intron 35.0%
AGATTTCAAAATCAGAGCCA+TGG + chr3_4:3126443-3126462 None:intergenic 35.0%
!! TCAATAGCTTTATTGCCTTG+CGG + chr3_4:3126492-3126511 None:intergenic 35.0%
CAAGGCAATAAAGCTATTGA+TGG - chr3_4:3126492-3126511 Msa0485430:intron 35.0%
GGGTGCATTTATTATCAACT+TGG - chr3_4:3126568-3126587 Msa0485430:intron 35.0%
AGATTTATCCTGTGAGAAAG+TGG + chr3_4:3126677-3126696 None:intergenic 35.0%
! ATGTTTTCAGAAGGCAAGTT+TGG - chr3_4:3126762-3126781 Msa0485430:intron 35.0%
!! TGTCTGATGGCTTTAGAAAA+GGG - chr3_4:3126829-3126848 Msa0485430:intron 35.0%
GAACTCGACATGATTTGATT+AGG + chr3_4:3126855-3126874 None:intergenic 35.0%
GAAGATCAAATTCCAGGTAA+TGG - chr3_4:3126940-3126959 Msa0485430:intron 35.0%
CTTCAAACGATTTGTACTGT+AGG + chr3_4:3127079-3127098 None:intergenic 35.0%
! AGTACAAATCGTTTGAAGTC+TGG - chr3_4:3127081-3127100 Msa0485430:intron 35.0%
TTAAGTCGTAAAAACTCGCA+TGG - chr3_4:3127162-3127181 Msa0485430:intron 35.0%
! TTTTCAGTAGCAGTAGGTTT+AGG - chr3_4:3127201-3127220 Msa0485430:intron 35.0%
AGGTCAGGTAAATTCAAATG+GGG - chr3_4:3127221-3127240 Msa0485430:intron 35.0%
GACATCTTCATAATACGAGA+GGG + chr3_4:3127295-3127314 None:intergenic 35.0%
AGACATCTTCATAATACGAG+AGG + chr3_4:3127296-3127315 None:intergenic 35.0%
TAATTTAGCATATGTGGAGC+TGG - chr3_4:3127356-3127375 Msa0485430:intron 35.0%
GCCTAGAAAGATGTAAATTC+TGG + chr3_4:3127445-3127464 None:intergenic 35.0%
GAATTTGAAGACGTAAATGG+AGG - chr3_4:3127612-3127631 Msa0485430:intron 35.0%
! AGCCAATATATTGGTTACAC+AGG - chr3_4:3127764-3127783 Msa0485430:intron 35.0%
TGCCTGTGTAACCAATATAT+TGG + chr3_4:3127769-3127788 None:intergenic 35.0%
CAAGAGATCAACATAAACTG+CGG + chr3_4:3127829-3127848 None:intergenic 35.0%
GTTTATGTTGATCTCTTGCT+TGG - chr3_4:3127831-3127850 Msa0485430:CDS 35.0%
!!! ACGGCTACAACTTTTTAGTT+TGG + chr3_4:3127877-3127896 None:intergenic 35.0%
ACACCTCAAATTTCAAAGGT+GGG + chr3_4:3128136-3128155 None:intergenic 35.0%
TACACCTCAAATTTCAAAGG+TGG + chr3_4:3128137-3128156 None:intergenic 35.0%
! TTTGAGGTGTAGATCTGATT+CGG - chr3_4:3128146-3128165 Msa0485430:five_prime_UTR 35.0%
!!! CCTTTGTGTTGTTTTTGCCA+AGG + chr3_4:3121695-3121714 None:intergenic 40.0%
CCTTGGCAAAAACAACACAA+AGG - chr3_4:3121692-3121711 Msa0485430:three_prime_UTR 40.0%
!! GATGAAAACATGGCTTGGTT+TGG + chr3_4:3121738-3121757 None:intergenic 40.0%
! TCGAAGGTTGAAAGGGTTTT+GGG + chr3_4:3121845-3121864 None:intergenic 40.0%
! ATCGAAGGTTGAAAGGGTTT+TGG + chr3_4:3121846-3121865 None:intergenic 40.0%
TTATTAGATCGGCGATGAAG+CGG - chr3_4:3122462-3122481 Msa0485430:CDS 40.0%
CCAATAGTTGTGCTAAAAGG+GGG - chr3_4:3122511-3122530 Msa0485430:CDS 40.0%
TCTACGCATTGAGAGCTAAA+AGG + chr3_4:3122787-3122806 None:intergenic 40.0%
! GCAAAGGACAATGATTTTGG+TGG - chr3_4:3123098-3123117 Msa0485430:CDS 40.0%
GGGCCAATTAATTTCCCAAT+TGG - chr3_4:3123584-3123603 Msa0485430:CDS 40.0%
ATACTGGGTACAAAAGGTAG+TGG + chr3_4:3123739-3123758 None:intergenic 40.0%
CACAGTATACTGGGTACAAA+AGG + chr3_4:3123745-3123764 None:intergenic 40.0%
! CTTTTGTACCCAGTATACTG+TGG - chr3_4:3123743-3123762 Msa0485430:CDS 40.0%
GAAATACTGGTGTAGATGAG+TGG - chr3_4:3123944-3123963 Msa0485430:intron 40.0%
TAAAAGCTGGTGCAGAAGAT+AGG - chr3_4:3123998-3124017 Msa0485430:intron 40.0%
TATGGTTTACCCCCAATGAA+AGG - chr3_4:3124073-3124092 Msa0485430:intron 40.0%
ACCAGTTGATCCTTTCATTG+GGG + chr3_4:3124086-3124105 None:intergenic 40.0%
CACCAGTTGATCCTTTCATT+GGG + chr3_4:3124087-3124106 None:intergenic 40.0%
ACACCAGTTGATCCTTTCAT+TGG + chr3_4:3124088-3124107 None:intergenic 40.0%
CGTCGGAAATAAAGTTGCTT+TGG - chr3_4:3124299-3124318 Msa0485430:intron 40.0%
ACGGAAGAGTCAAATTCATC+TGG + chr3_4:3124390-3124409 None:intergenic 40.0%
AACCTCTCTAGGCTATTATC+TGG - chr3_4:3124532-3124551 Msa0485430:intron 40.0%
AACCAGATAATAGCCTAGAG+AGG + chr3_4:3124537-3124556 None:intergenic 40.0%
TGACTATGCAAAGACGGTAT+CGG - chr3_4:3124566-3124585 Msa0485430:intron 40.0%
GAAAGAGAACACAGAGTTAG+GGG + chr3_4:3124710-3124729 None:intergenic 40.0%
GGAAAGAGAACACAGAGTTA+GGG + chr3_4:3124711-3124730 None:intergenic 40.0%
AGGAAAGAGAACACAGAGTT+AGG + chr3_4:3124712-3124731 None:intergenic 40.0%
CTCTTTCCTAAAGCAGTCAA+CGG - chr3_4:3124723-3124742 Msa0485430:intron 40.0%
!! CAGCTGATTTTGATGCATCA+TGG + chr3_4:3124792-3124811 None:intergenic 40.0%
TCTTCTTCCCAAGCTAATGT+TGG - chr3_4:3125057-3125076 Msa0485430:intron 40.0%
CTTCTTCCCAAGCTAATGTT+GGG - chr3_4:3125058-3125077 Msa0485430:intron 40.0%
! ATCATGCCCAACATTAGCTT+GGG + chr3_4:3125067-3125086 None:intergenic 40.0%
AATCATGCCCAACATTAGCT+TGG + chr3_4:3125068-3125087 None:intergenic 40.0%
AAGCTAATGTTGGGCATGAT+TGG - chr3_4:3125067-3125086 Msa0485430:intron 40.0%
! ATCCTTTATTTGCAGCTGTC+TGG - chr3_4:3125132-3125151 Msa0485430:CDS 40.0%
GAGATTTGTGCATTCTCATG+GGG - chr3_4:3125253-3125272 Msa0485430:intron 40.0%
AGATTTGTGCATTCTCATGG+GGG - chr3_4:3125254-3125273 Msa0485430:intron 40.0%
GGGGTGAGATACATAAATGT+TGG - chr3_4:3125274-3125293 Msa0485430:intron 40.0%
GGTCTATGCACAGAAAATGT+GGG - chr3_4:3125296-3125315 Msa0485430:CDS 40.0%
! CAATTGCAGCACATTTTGAG+TGG + chr3_4:3125375-3125394 None:intergenic 40.0%
AGGGAGAAGTTTAAAAAGGG+AGG - chr3_4:3125398-3125417 Msa0485430:intron 40.0%
GGGAGAAGTTTAAAAAGGGA+GGG - chr3_4:3125399-3125418 Msa0485430:intron 40.0%
AAAAAGGGAGGGATTACTGA+AGG - chr3_4:3125410-3125429 Msa0485430:intron 40.0%
AAAAGGGAGGGATTACTGAA+GGG - chr3_4:3125411-3125430 Msa0485430:intron 40.0%
!! TTTTGAGGGGATAACTGAAG+GGG - chr3_4:3125457-3125476 Msa0485430:intron 40.0%
ATAGTTGCAGACTCTCTGTT+AGG - chr3_4:3125860-3125879 Msa0485430:intron 40.0%
! TGAGCTGGATCATTTTGCTT+AGG - chr3_4:3125976-3125995 Msa0485430:intron 40.0%
!! TTAGGATGTGTTGACTTACC+TGG - chr3_4:3125994-3126013 Msa0485430:intron 40.0%
!! ACTTACCTGGAAAGAGCATT+TGG - chr3_4:3126007-3126026 Msa0485430:intron 40.0%
!! AGTGCGAATCAAGTTGACAA+TGG - chr3_4:3126037-3126056 Msa0485430:intron 40.0%
!! GTGCGAATCAAGTTGACAAT+GGG - chr3_4:3126038-3126057 Msa0485430:intron 40.0%
ATCAGCAGCAGATTCACTAA+TGG + chr3_4:3126116-3126135 None:intergenic 40.0%
ATCCATCCAGTTCCGATTTA+GGG - chr3_4:3126134-3126153 Msa0485430:intron 40.0%
! TCCAGAACTTTCTCTGAAGA+TGG - chr3_4:3126187-3126206 Msa0485430:intron 40.0%
! CCAGAACTTTCTCTGAAGAT+GGG - chr3_4:3126188-3126207 Msa0485430:intron 40.0%
!!! TGCAGCCATGTTTTTGGATA+TGG - chr3_4:3126219-3126238 Msa0485430:intron 40.0%
!!! GCAGCCATGTTTTTGGATAT+GGG - chr3_4:3126220-3126239 Msa0485430:intron 40.0%
CAAAATTTAACTAGGCCAGC+GGG - chr3_4:3126247-3126266 Msa0485430:intron 40.0%
TAACTAATTGTTCGTCGCTG+CGG - chr3_4:3126629-3126648 Msa0485430:CDS 40.0%
AAACATCGAGCTGCAAGTAT+TGG + chr3_4:3126748-3126767 None:intergenic 40.0%
!! CTGTCTGATGGCTTTAGAAA+AGG - chr3_4:3126828-3126847 Msa0485430:intron 40.0%
!! TTGTTGGGTTGGAAAAATGG+AGG - chr3_4:3126905-3126924 Msa0485430:intron 40.0%
!! AAAATGGAGGCAACTTGTTG+TGG - chr3_4:3126918-3126937 Msa0485430:intron 40.0%
GTTGTGGAAGATCAAATTCC+AGG - chr3_4:3126934-3126953 Msa0485430:intron 40.0%
!! AATTCCAGGTAATGGACACA+TGG - chr3_4:3126948-3126967 Msa0485430:intron 40.0%
TCCTCCACAGAAGAATTAGA+GGG + chr3_4:3127111-3127130 None:intergenic 40.0%
ATCCTCCACAGAAGAATTAG+AGG + chr3_4:3127112-3127131 None:intergenic 40.0%
!! AAGGCATTTTCAGTAGCAGT+AGG - chr3_4:3127195-3127214 Msa0485430:intron 40.0%
CTTTCTAGGCCATGTTTATG+CGG - chr3_4:3127455-3127474 Msa0485430:intron 40.0%
! TTGCTTGCTGAATAGACCAA+AGG - chr3_4:3127488-3127507 Msa0485430:intron 40.0%
AAGTAATCAGCAGCTTCCTT+TGG + chr3_4:3127507-3127526 None:intergenic 40.0%
GTGAGAAATTGCAAGTAGAG+AGG - chr3_4:3127583-3127602 Msa0485430:intron 40.0%
TGCGAAGAATTCTTCTCTTC+AGG - chr3_4:3127644-3127663 Msa0485430:intron 40.0%
! TATTGTTTTCCTCAAGCCAG+AGG - chr3_4:3127677-3127696 Msa0485430:intron 40.0%
AACATAAACTGCGGTAAGTG+TGG + chr3_4:3127820-3127839 None:intergenic 40.0%
! CTTCATGAGTGTTGTATGCA+TGG - chr3_4:3127934-3127953 Msa0485430:CDS 40.0%
CATGGTTATATCATTGTGCC+TGG - chr3_4:3127952-3127971 Msa0485430:CDS 40.0%
GCTAACTAAAACTGAGAGGT+GGG + chr3_4:3127978-3127997 None:intergenic 40.0%
TGCTAACTAAAACTGAGAGG+TGG + chr3_4:3127979-3127998 None:intergenic 40.0%
!!! ACCTCTCAGTTTTAGTTAGC+AGG - chr3_4:3127978-3127997 Msa0485430:CDS 40.0%
ACCTGCTAACTAAAACTGAG+AGG + chr3_4:3127982-3128001 None:intergenic 40.0%
CAAATTTAGGGGTCAGTTAC+AGG - chr3_4:3128088-3128107 Msa0485430:five_prime_UTR 40.0%
! CGAAGGTTGAAAGGGTTTTG+GGG + chr3_4:3121844-3121863 None:intergenic 45.0%
! CCCCCTTTTAGCACAACTAT+TGG + chr3_4:3122514-3122533 None:intergenic 45.0%
! ACAGTTACTGGTCTCACCTA+AGG - chr3_4:3122636-3122655 Msa0485430:CDS 45.0%
TTGACTTAGAGCTGCACCTT+AGG + chr3_4:3122655-3122674 None:intergenic 45.0%
ATTGCGGAATTCTTCCGAGA+TGG - chr3_4:3123249-3123268 Msa0485430:CDS 45.0%
TGGGATCAGAACAACCATCT+CGG + chr3_4:3123266-3123285 None:intergenic 45.0%
TCCCAATTGGCAAATGGCTT+CGG - chr3_4:3123597-3123616 Msa0485430:CDS 45.0%
ACCGAAGCCATTTGCCAATT+GGG + chr3_4:3123601-3123620 None:intergenic 45.0%
TACCGAAGCCATTTGCCAAT+TGG + chr3_4:3123602-3123621 None:intergenic 45.0%
TGTACCCAGTATACTGTGGT+TGG - chr3_4:3123747-3123766 Msa0485430:CDS 45.0%
GTCACCAACCACAGTATACT+GGG + chr3_4:3123754-3123773 None:intergenic 45.0%
TGTCACCAACCACAGTATAC+TGG + chr3_4:3123755-3123774 None:intergenic 45.0%
TCCTTCTTCTGGGTCTCTAT+TGG - chr3_4:3123789-3123808 Msa0485430:CDS 45.0%
ACCAATAGAGACCCAGAAGA+AGG + chr3_4:3123793-3123812 None:intergenic 45.0%
CTGGTGTAGATGAGTGGAAT+AGG - chr3_4:3123950-3123969 Msa0485430:intron 45.0%
! CTTCTGCACCAGCTTTTACT+TGG + chr3_4:3123996-3124015 None:intergenic 45.0%
CCAGTTGATCCTTTCATTGG+GGG + chr3_4:3124085-3124104 None:intergenic 45.0%
TCCTTGATCCACATACGTCA+GGG + chr3_4:3124265-3124284 None:intergenic 45.0%
GGAGAGCTAGTTAACAACGT+CGG - chr3_4:3124282-3124301 Msa0485430:intron 45.0%
!! AAAGTTGCTTTGGGGTCCAA+AGG - chr3_4:3124309-3124328 Msa0485430:intron 45.0%
!! TGCTAAGGCATTGCTTCCTT+TGG + chr3_4:3124328-3124347 None:intergenic 45.0%
!!! TGCAAAGACGGTATCGGTTT+TGG - chr3_4:3124572-3124591 Msa0485430:intron 45.0%
TTGATGCATCATGGCATGCA+AGG + chr3_4:3124783-3124802 None:intergenic 45.0%
! ACTTCTTTTATTAGCGGGGC+TGG - chr3_4:3124931-3124950 Msa0485430:intron 45.0%
CTCCAGACAGCTGCAAATAA+AGG + chr3_4:3125137-3125156 None:intergenic 45.0%
! CTTTATTTGCAGCTGTCTGG+AGG - chr3_4:3125135-3125154 Msa0485430:CDS 45.0%
GATTTGTGCATTCTCATGGG+GGG - chr3_4:3125255-3125274 Msa0485430:intron 45.0%
GGGTCTATGCACAGAAAATG+TGG - chr3_4:3125295-3125314 Msa0485430:CDS 45.0%
AAAGGGAGGGATTACTGAAG+GGG - chr3_4:3125412-3125431 Msa0485430:intron 45.0%
!! AGCAATTGGTTTGGGTGGTT+TGG - chr3_4:3125493-3125512 Msa0485430:CDS 45.0%
!! GCAATTGGTTTGGGTGGTTT+GGG - chr3_4:3125494-3125513 Msa0485430:CDS 45.0%
ACATGTGCACTATTCTGAGC+TGG - chr3_4:3125961-3125980 Msa0485430:intron 45.0%
CAACACCAAATGCTCTTTCC+AGG + chr3_4:3126015-3126034 None:intergenic 45.0%
!! CTGGAAAGAGCATTTGGTGT+TGG - chr3_4:3126013-3126032 Msa0485430:intron 45.0%
GCAGATTCACTAATGGTGAC+AGG + chr3_4:3126109-3126128 None:intergenic 45.0%
GATCCATCCAGTTCCGATTT+AGG - chr3_4:3126133-3126152 Msa0485430:intron 45.0%
ACTTGACCCTAAATCGGAAC+TGG + chr3_4:3126143-3126162 None:intergenic 45.0%
CCCATCTTCAGAGAAAGTTC+TGG + chr3_4:3126191-3126210 None:intergenic 45.0%
! GCTCAAGTTGCAACTTTGCA+AGG - chr3_4:3126330-3126349 Msa0485430:intron 45.0%
!! CTTCTCGTTTTGCTGTCTTC+AGG + chr3_4:3126381-3126400 None:intergenic 45.0%
AGCAAAACGAGAAGTCAAGC+TGG - chr3_4:3126387-3126406 Msa0485430:intron 45.0%
ACGTGGAAGAGATTCATCCA+TGG - chr3_4:3126423-3126442 Msa0485430:intron 45.0%
TCTCAGCTTGAATATGCTCG+TGG - chr3_4:3126460-3126479 Msa0485430:intron 45.0%
!! ATAGCTTTATTGCCTTGCGG+TGG + chr3_4:3126489-3126508 None:intergenic 45.0%
GTCCTCATTCTTCTTCTCGA+AGG - chr3_4:3126603-3126622 Msa0485430:CDS 45.0%
TGCCTTCGAGAAGAAGAATG+AGG + chr3_4:3126608-3126627 None:intergenic 45.0%
GAAGGAGCAGCAAAAAAAGC+TGG - chr3_4:3126651-3126670 Msa0485430:CDS 45.0%
! TGCAGCTCGATGTTTTCAGA+AGG - chr3_4:3126753-3126772 Msa0485430:intron 45.0%
! TCAGACAGCATTCTGAGAGT+CGG + chr3_4:3126816-3126835 None:intergenic 45.0%
ACTCTCAGAATGCTGTCTGA+TGG - chr3_4:3126816-3126835 Msa0485430:intron 45.0%
TCGAGTTCCTTCAGAGAAGA+TGG - chr3_4:3126867-3126886 Msa0485430:intron 45.0%
AGTTCCTTCAGAGAAGATGG+AGG - chr3_4:3126870-3126889 Msa0485430:intron 45.0%
AGGTTGGAGTTTGCGTTGTT+GGG - chr3_4:3126890-3126909 Msa0485430:intron 45.0%
!! GCGTTGTTGGGTTGGAAAAA+TGG - chr3_4:3126902-3126921 Msa0485430:intron 45.0%
GATTCCATGTGTCCATTACC+TGG + chr3_4:3126955-3126974 None:intergenic 45.0%
GACACATGGAATCCTCCAAA+GGG - chr3_4:3126962-3126981 Msa0485430:intron 45.0%
ACACATGGAATCCTCCAAAG+GGG - chr3_4:3126963-3126982 Msa0485430:intron 45.0%
AGTTATCGATGTCCCTTGCT+CGG - chr3_4:3127019-3127038 Msa0485430:intron 45.0%
!! GCAAGTGAAGAGCATTCAAG+AGG + chr3_4:3127050-3127069 None:intergenic 45.0%
CTTGCCCTCTAATTCTTCTG+TGG - chr3_4:3127104-3127123 Msa0485430:intron 45.0%
AGTAGCAGTAGGTTTAGGTC+AGG - chr3_4:3127206-3127225 Msa0485430:intron 45.0%
TGGGGACACAAAAGAACAGA+AGG - chr3_4:3127239-3127258 Msa0485430:intron 45.0%
GGGGACACAAAAGAACAGAA+GGG - chr3_4:3127240-3127259 Msa0485430:intron 45.0%
GACACAAAAGAACAGAAGGG+AGG - chr3_4:3127243-3127262 Msa0485430:intron 45.0%
CATAATACGAGAGGGAGTTC+TGG + chr3_4:3127287-3127306 None:intergenic 45.0%
AGCATATGTGGAGCTGGAAT+TGG - chr3_4:3127362-3127381 Msa0485430:intron 45.0%
GGAATTGGACAATCCTGTGA+AGG - chr3_4:3127377-3127396 Msa0485430:intron 45.0%
TCACAGTCGTCTTGGCTAAA+TGG + chr3_4:3127567-3127586 None:intergenic 45.0%
GCAATTTCTCACAGTCGTCT+TGG + chr3_4:3127575-3127594 None:intergenic 45.0%
AGAAGAATTCTTCGCAGCAG+TGG + chr3_4:3127640-3127659 None:intergenic 45.0%
TGCTGTAATGTCTGCAATGC+AGG - chr3_4:3127728-3127747 Msa0485430:intron 45.0%
GCTGTAATGTCTGCAATGCA+GGG - chr3_4:3127729-3127748 Msa0485430:intron 45.0%
AGTTTGGCTAGAGCTTCTTG+TGG + chr3_4:3127861-3127880 None:intergenic 45.0%
TTAAACTTACTCCACTGGGC+AGG + chr3_4:3127908-3127927 None:intergenic 45.0%
ATTTAGGGGTCAGTTACAGG+TGG - chr3_4:3128091-3128110 Msa0485430:five_prime_UTR 45.0%
!! GTGCCCACCTTTGAAATTTG+AGG - chr3_4:3128130-3128149 Msa0485430:five_prime_UTR 45.0%
!!! ATTTTCTTTAAAAATTATAA+TGG - chr3_4:3124662-3124681 Msa0485430:intron 5.0%
!!! TTTTCTTTAAAAATTATAAT+GGG - chr3_4:3124663-3124682 Msa0485430:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr3_4:3125442-3125461 Msa0485430:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG - chr3_4:3125443-3125462 Msa0485430:intron 5.0%
CCATAGCGAGATCGAGGAAT+TGG + chr3_4:3121878-3121897 None:intergenic 50.0%
CCAATTCCTCGATCTCGCTA+TGG - chr3_4:3121875-3121894 Msa0485430:three_prime_UTR 50.0%
GAGATTCCATAGCGAGATCG+AGG + chr3_4:3121884-3121903 None:intergenic 50.0%
GTGCGTGCATGCATGTATGT+AGG - chr3_4:3122903-3122922 Msa0485430:CDS 50.0%
TGGCAAATGGCTTCGGTAGA+TGG - chr3_4:3123604-3123623 Msa0485430:CDS 50.0%
GAAATACTGGTGGGGATGAG+TGG - chr3_4:3123872-3123891 Msa0485430:CDS 50.0%
CCCCCAATGAAAGGATCAAC+TGG - chr3_4:3124082-3124101 Msa0485430:intron 50.0%
TCCCTGACGTATGTGGATCA+AGG - chr3_4:3124261-3124280 Msa0485430:intron 50.0%
CTCCTTGATCCACATACGTC+AGG + chr3_4:3124266-3124285 None:intergenic 50.0%
! ACCTGAAAACTGCGGTGCTA+AGG + chr3_4:3124343-3124362 None:intergenic 50.0%
! GTAGAGCCGTTGACTGCTTT+AGG + chr3_4:3124732-3124751 None:intergenic 50.0%
GACCCTAAATCGGAACTGGA+TGG + chr3_4:3126139-3126158 None:intergenic 50.0%
TAATTGTTCGTCGCTGCGGA+AGG - chr3_4:3126633-3126652 Msa0485430:CDS 50.0%
! AAAGCTGGCCACTTTCTCAC+AGG - chr3_4:3126666-3126685 Msa0485430:intron 50.0%
TAATTGTGGCGTGCAGCACT+TGG - chr3_4:3126711-3126730 Msa0485430:intron 50.0%
CCAACCTCCATCTTCTCTGA+AGG + chr3_4:3126877-3126896 None:intergenic 50.0%
CCTTCAGAGAAGATGGAGGT+TGG - chr3_4:3126874-3126893 Msa0485430:intron 50.0%
GAGGTTGGAGTTTGCGTTGT+TGG - chr3_4:3126889-3126908 Msa0485430:intron 50.0%
TGGAGTTTGCGTTGTTGGGT+TGG - chr3_4:3126894-3126913 Msa0485430:intron 50.0%
GGACACATGGAATCCTCCAA+AGG - chr3_4:3126961-3126980 Msa0485430:intron 50.0%
TCCTCCAAAGGGGATGATTG+CGG - chr3_4:3126973-3126992 Msa0485430:intron 50.0%
ATTGCGGTCCAGGTGAAGAT+GGG - chr3_4:3126989-3127008 Msa0485430:intron 50.0%
GCCCTCTAATTCTTCTGTGG+AGG - chr3_4:3127107-3127126 Msa0485430:intron 50.0%
! TGTTTTCCTCAAGCCAGAGG+AGG - chr3_4:3127680-3127699 Msa0485430:intron 50.0%
CTCTGGACTGTTGGGCAATA+TGG + chr3_4:3127796-3127815 None:intergenic 50.0%
CATATTGCCCAACAGTCCAG+AGG - chr3_4:3127794-3127813 Msa0485430:intron 50.0%
CACTGGGCAGGAACCTAATA+CGG + chr3_4:3127896-3127915 None:intergenic 50.0%
!! TCGCGGTTGGTGGTTGAAGA+AGG + chr3_4:3121927-3121946 None:intergenic 55.0%
!! GAAAACGCCGTCGTCGACTT+CGG + chr3_4:3121961-3121980 None:intergenic 55.0%
AGCGTCTTTGGCAAGAGCGA+CGG + chr3_4:3121991-3122010 None:intergenic 55.0%
CTGGTGGGGATGAGTGGAAT+AGG - chr3_4:3123878-3123897 Msa0485430:CDS 55.0%
CGAGCTTTCCCTGACGTATG+TGG - chr3_4:3124254-3124273 Msa0485430:intron 55.0%
! GCCTTAGCACCGCAGTTTTC+AGG - chr3_4:3124339-3124358 Msa0485430:intron 55.0%
! TGGTTTGGGTGGTTTGGGTC+TGG - chr3_4:3125499-3125518 Msa0485430:CDS 55.0%
! GGTTTGGGTGGTTTGGGTCT+GGG - chr3_4:3125500-3125519 Msa0485430:CDS 55.0%
! GGTGGTTTGGGTCTGGGAAT+TGG - chr3_4:3125506-3125525 Msa0485430:CDS 55.0%
TAATTTGAAGGAGGGCCCGC+TGG + chr3_4:3126265-3126284 None:intergenic 55.0%
CTGGCGATGAACATTGCACG+TGG - chr3_4:3126406-3126425 Msa0485430:intron 55.0%
TCTACAAGCAGCCCCTCTTG+TGG - chr3_4:3126788-3126807 Msa0485430:intron 55.0%
TGAGAGTCGGAGCCACAAGA+GGG + chr3_4:3126803-3126822 None:intergenic 55.0%
ACCGCAATCATCCCCTTTGG+AGG + chr3_4:3126977-3126996 None:intergenic 55.0%
TGGACCGCAATCATCCCCTT+TGG + chr3_4:3126980-3126999 None:intergenic 55.0%
AAAGGGGATGATTGCGGTCC+AGG - chr3_4:3126979-3126998 Msa0485430:intron 55.0%
GATTGCGGTCCAGGTGAAGA+TGG - chr3_4:3126988-3127007 Msa0485430:intron 55.0%
!! CTCGCATGGCGCTGATTCAA+AGG - chr3_4:3127176-3127195 Msa0485430:intron 55.0%
ACAGAAGGGAGGAGCTAGTC+AGG - chr3_4:3127254-3127273 Msa0485430:intron 55.0%
AGGCCATGTTTATGCGGCAG+AGG - chr3_4:3127461-3127480 Msa0485430:intron 55.0%
GAGCCTCTGCCGCATAAACA+TGG + chr3_4:3127467-3127486 None:intergenic 55.0%
ATTGATGCCCTTGCCTCCTC+TGG + chr3_4:3127696-3127715 None:intergenic 55.0%
AGTGTGGCCTCTGGACTGTT+GGG + chr3_4:3127804-3127823 None:intergenic 55.0%
AAGTGTGGCCTCTGGACTGT+TGG + chr3_4:3127805-3127824 None:intergenic 55.0%
CGTATTAGGTTCCTGCCCAG+TGG - chr3_4:3127894-3127913 Msa0485430:CDS 55.0%
CTAAAACTGAGAGGTGGGCC+AGG + chr3_4:3127973-3127992 None:intergenic 55.0%
GGTCAGTTACAGGTGGAGAC+TGG - chr3_4:3128098-3128117 Msa0485430:five_prime_UTR 55.0%
TGCTCGTGGTAACCACCGCA+AGG - chr3_4:3126474-3126493 Msa0485430:intron 60.0%
GAGAGTCGGAGCCACAAGAG+GGG + chr3_4:3126802-3126821 None:intergenic 60.0%
CTGAGAGTCGGAGCCACAAG+AGG + chr3_4:3126804-3126823 None:intergenic 60.0%
TTCAGCCGCCCATCTTCACC+TGG + chr3_4:3127000-3127019 None:intergenic 60.0%
!! CAAGAGGCACTGCCGAGCAA+GGG + chr3_4:3127034-3127053 None:intergenic 60.0%
!! TCAAGAGGCACTGCCGAGCA+AGG + chr3_4:3127035-3127054 None:intergenic 60.0%
GCAGCTGCAAGTGCCTTCAC+AGG + chr3_4:3127393-3127412 None:intergenic 60.0%
TCCTCAAGCCAGAGGAGGCA+AGG - chr3_4:3127685-3127704 Msa0485430:intron 60.0%
CCTCAAGCCAGAGGAGGCAA+GGG - chr3_4:3127686-3127705 Msa0485430:intron 60.0%
ACTGCGGTAAGTGTGGCCTC+TGG + chr3_4:3127813-3127832 None:intergenic 60.0%
GGAAGGAGAGTCGCGGTTGG+TGG + chr3_4:3121937-3121956 None:intergenic 65.0%
CTTCGGCGGAAGGAGAGTCG+CGG + chr3_4:3121944-3121963 None:intergenic 65.0%
CCTTCCGCCGAAGTCGACGA+CGG - chr3_4:3121951-3121970 Msa0485430:three_prime_UTR 65.0%
!! AACGCCGTCGTCGACTTCGG+CGG + chr3_4:3121958-3121977 None:intergenic 65.0%
! GGCGTGCAGCACTTGGCTTG+TGG - chr3_4:3126718-3126737 Msa0485430:intron 65.0%
GCGGTCCAGGTGAAGATGGG+CGG - chr3_4:3126992-3127011 Msa0485430:intron 65.0%
! CCCTTGCCTCCTCTGGCTTG+AGG + chr3_4:3127689-3127708 None:intergenic 65.0%
GGCGGAAGGAGAGTCGCGGT+TGG + chr3_4:3121940-3121959 None:intergenic 70.0%
!! CCGTCGTCGACTTCGGCGGA+AGG + chr3_4:3121954-3121973 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 3121629 3128285 3121629 ID=Msa0485430;Name=Msa0485430
chr3_4 mRNA 3121629 3128285 3121629 ID=Msa0485430-mRNA-1;Parent=Msa0485430;Name=Msa0485430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=265|1|1|1|1|1|6|344|857
chr3_4 exon 3121629 3123916 3121629 ID=Msa0485430-mRNA-1:exon:1080;Parent=Msa0485430-mRNA-1
chr3_4 exon 3125104 3125175 3125104 ID=Msa0485430-mRNA-1:exon:1079;Parent=Msa0485430-mRNA-1
chr3_4 exon 3125285 3125371 3125285 ID=Msa0485430-mRNA-1:exon:1078;Parent=Msa0485430-mRNA-1
chr3_4 exon 3125489 3125671 3125489 ID=Msa0485430-mRNA-1:exon:1077;Parent=Msa0485430-mRNA-1
chr3_4 exon 3126597 3126683 3126597 ID=Msa0485430-mRNA-1:exon:1076;Parent=Msa0485430-mRNA-1
chr3_4 exon 3127820 3128285 3127820 ID=Msa0485430-mRNA-1:exon:1075;Parent=Msa0485430-mRNA-1
chr3_4 five_prime_UTR 3128021 3128285 3128021 ID=Msa0485430-mRNA-1:five_prime_utr;Parent=Msa0485430-mRNA-1
chr3_4 CDS 3127820 3128020 3127820 ID=Msa0485430-mRNA-1:cds;Parent=Msa0485430-mRNA-1
chr3_4 CDS 3126597 3126683 3126597 ID=Msa0485430-mRNA-1:cds;Parent=Msa0485430-mRNA-1
chr3_4 CDS 3125489 3125671 3125489 ID=Msa0485430-mRNA-1:cds;Parent=Msa0485430-mRNA-1
chr3_4 CDS 3125285 3125371 3125285 ID=Msa0485430-mRNA-1:cds;Parent=Msa0485430-mRNA-1
chr3_4 CDS 3125104 3125175 3125104 ID=Msa0485430-mRNA-1:cds;Parent=Msa0485430-mRNA-1
chr3_4 CDS 3121973 3123916 3121973 ID=Msa0485430-mRNA-1:cds;Parent=Msa0485430-mRNA-1
chr3_4 three_prime_UTR 3121629 3121972 3121629 ID=Msa0485430-mRNA-1:three_prime_utr;Parent=Msa0485430-mRNA-1
Gene Sequence

>Msa0485430

ATGGAATCTCGAGATTTGACATCTTCTTCTCCTTCTTCAACCACCAACCGCGACTCTCCTTCCGCCGAAGTCGACGACGGCGTTTTCGCTCTCACCGTCGCTCTTGCCAAAGACGCTTCTTTGCATTATCAATCTGGCAAGTTCGCTGAATGTGTTGATGTCATGCAACATCTCTTGCTAAACAAACCTAACGATCCAAAGGTACTTCATAATATAGCAATTGCGGAATTCTTCCGAGATGGTTGTTCTGATCCCAAAAAGTTGCTTGAAGTAATTTATAGCATCAAGAGAAAATATGGCGAGCTTTCCCTGACGTATGTGGATCAAGGAGAGCTAGTTAACAACGTCGGAAATAAAGTTGCTTTGGGGTCCAAAGGAAGCAATGCCTTAGCACCGCAGTTTTCAGGTGTAAATAGCACTGACACAATGCATCCAGATGAATTTGACTCTTCCGTCGCAACACTAAATATTGCTATTATCTGGTTCCATCTTCATGACTATGCAAAGACGGTATCGGTTTTGGAACCCCTATTTCAAAAGATTGATCCCATAAAAGAGTCAACGGCTCTACATATTTGTCTTCTGCTGCTTGATGCTAGCCTTGCATGCCATGATGCATCAAAATCAGCTGATGTGTTGACTTACCTGGAAAGAGCATTTGGTGTTGGTAGTGCGAATCAAGTTGACAATGGGAATACAACACAGCAACAATCTGCAAATCTAACGACAAAGTCTGTACCTGTCACCATTAGTGAATCTGCTGCTGATCCATCCAGTTCCGATTTAGGGTCAAGTGCTAATGCATCTGAAAATAATCTATCCAGAACTTTCTCTGAAGATGGGCTTGATTATGCAGCCATGTTTTTGGATATGGGTTCACAAAATTTAACTAGGCCAGCGGGCCCTCCTTCAAATTATCTTTCTAGGGCTTTGGTTGACAGTGTTTCTACTCTTGATTTAAAGCTCAAGTTGCAACTTTGCAAGGTGCAGTTTCTGATTCTTACTAGGAACCTGAAGACAGCAAAACGAGAAGTCAAGCTGGCGATGAACATTGCACGTGGAAGAGATTCATCCATGGCTCTGATTTTGAAATCTCAGCTTGAATATGCTCGTGGTAACCACCGCAAGGCAATAAAGCTATTGATGGCATCAAGTAATAGAACAGACACGGAGTTTTCGAGCATTTTTAACAACAATCTTGGGTGCATTTATTATCAACTTGGGAAATATCAGACGTCCTCATTCTTCTTCTCGAAGGCATTAACTAATTGTTCGTCGCTGCGGAAGGAGCAGCAAAAAAAGCTGGCCACTTTCTCACAGGATAAATCTCTCCTTATAATTTATAATTGTGGCGTGCAGCACTTGGCTTGTGGAAAGCCAATACTTGCAGCTCGATGTTTTCAGAAGGCAAGTTTGGTCTTCTACAAGCAGCCCCTCTTGTGGCTCCGACTCTCAGAATGCTGTCTGATGGCTTTAGAAAAGGGCCTAATCAAATCATGTCGAGTTCCTTCAGAGAAGATGGAGGTTGGAGTTTGCGTTGTTGGGTTGGAAAAATGGAGGCAACTTGTTGTGGAAGATCAAATTCCAGGTAATGGACACATGGAATCCTCCAAAGGGGATGATTGCGGTCCAGGTGAAGATGGGCGGCTGAAGTTATCGATGTCCCTTGCTCGGCAGTGCCTCTTGAATGCTCTTCACTTGCTAGACTCCTACAGTACAAATCGTTTGAAGTCTGGCTTGCCCTCTAATTCTTCTGTGGAGGATGATACAAGTGAAATGTTGCCTTCAAAGAATTTAAGTCGTAAAAACTCGCATGGCGCTGATTCAAAGGCATTTTCAGTAGCAGTAGGTTTAGGTCAGGTAAATTCAAATGGGGACACAAAAGAACAGAAGGGAGGAGCTAGTCAGGAACTCTTCCAGAACTCCCTCTCGTATTATGAAGATGTCTGTAGAAGAGATAATCAATTGGTCAAGCAAGCTGTTCTAGCTAATTTAGCATATGTGGAGCTGGAATTGGACAATCCTGTGAAGGCACTTGCAGCTGCAAAATCTCTTTTTGAACTTCCAGAATGTTCCAGAATTTACATCTTTCTAGGCCATGTTTATGCGGCAGAGGCTCTTTGCTTGCTGAATAGACCAAAGGAAGCTGCTGATTACTTATCATATTATTTGTCTGGAGGAAACAGTGTTGAATTGCCATTTAGCCAAGACGACTGTGAGAAATTGCAAGTAGAGAGGACTGTTGAATTTGAAGACGTAAATGGAGGATCCACTGCTGCGAAGAATTCTTCTCTTCAGGATCCTCAAAGTATTGTTTTCCTCAAGCCAGAGGAGGCAAGGGCATCAATTTATGCTAACTTTGCTGTAATGTCTGCAATGCAGGGTGAACTTGAGAAAGCCAATATATTGGTTACACAGGCATTGTCCATATTGCCCAACAGTCCAGAGGCCACACTTACCGCAGTTTATGTTGATCTCTTGCTTGGTAAGCCACAAGAAGCTCTAGCCAAACTAAAAAGTTGTAGCCGTATTAGGTTCCTGCCCAGTGGAGTAAGTTTAAATAAATCTTCATGA
Protein sequence

>Msa0485430

MESRDLTSSSPSSTTNRDSPSAEVDDGVFALTVALAKDASLHYQSGKFAECVDVMQHLLLNKPNDPKVLHNIAIAEFFRDGCSDPKKLLEVIYSIKRKYGELSLTYVDQGELVNNVGNKVALGSKGSNALAPQFSGVNSTDTMHPDEFDSSVATLNIAIIWFHLHDYAKTVSVLEPLFQKIDPIKESTALHICLLLLDASLACHDASKSADVLTYLERAFGVGSANQVDNGNTTQQQSANLTTKSVPVTISESAADPSSSDLGSSANASENNLSRTFSEDGLDYAAMFLDMGSQNLTRPAGPPSNYLSRALVDSVSTLDLKLKLQLCKVQFLILTRNLKTAKREVKLAMNIARGRDSSMALILKSQLEYARGNHRKAIKLLMASSNRTDTEFSSIFNNNLGCIYYQLGKYQTSSFFFSKALTNCSSLRKEQQKKLATFSQDKSLLIIYNCGVQHLACGKPILAARCFQKASLVFYKQPLLWLRLSECCLMALEKGLIKSCRVPSEKMEVGVCVVGLEKWRQLVVEDQIPGNGHMESSKGDDCGPGEDGRLKLSMSLARQCLLNALHLLDSYSTNRLKSGLPSNSSVEDDTSEMLPSKNLSRKNSHGADSKAFSVAVGLGQVNSNGDTKEQKGGASQELFQNSLSYYEDVCRRDNQLVKQAVLANLAYVELELDNPVKALAAAKSLFELPECSRIYIFLGHVYAAEALCLLNRPKEAADYLSYYLSGGNSVELPFSQDDCEKLQVERTVEFEDVNGGSTAAKNSSLQDPQSIVFLKPEEARASIYANFAVMSAMQGELEKANILVTQALSILPNSPEATLTAVYVDLLLGKPQEALAKLKSCSRIRFLPSGVSLNKSS*