Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228680 | XP_013443833.1 | 98.667 | 375 | 3 | 2 | 1 | 375 | 1 | 373 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228680 | sp|O23593|RGGB_ARATH | 48.214 | 392 | 150 | 13 | 1 | 372 | 1 | 359 | 2.53e-83 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228680 | A0A072TM16 | 98.667 | 375 | 3 | 2 | 1 | 375 | 1 | 373 | 0.0 | 714 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0337670 | Msa1228680 | 0.809229 | 2.098126e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228680 | MtrunA17_Chr8g0335461 | 98.667 | 375 | 3 | 2 | 1 | 375 | 1 | 373 | 0.0 | 714 |
| Msa1228680 | MtrunA17_Chr7g0250541 | 62.087 | 393 | 113 | 10 | 1 | 373 | 1 | 377 | 3.24e-118 | 347 |
| Msa1228680 | MtrunA17_Chr8g0336041 | 52.439 | 164 | 16 | 4 | 203 | 366 | 5 | 106 | 2.14e-25 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228680 | AT4G17520.1 | 48.214 | 392 | 150 | 13 | 1 | 372 | 1 | 359 | 2.57e-84 | 261 |
| Msa1228680 | AT5G47210.1 | 48.294 | 381 | 164 | 9 | 1 | 372 | 1 | 357 | 7.22e-62 | 202 |
| Msa1228680 | AT4G16830.1 | 48.985 | 394 | 140 | 15 | 1 | 373 | 1 | 354 | 1.26e-61 | 202 |
| Msa1228680 | AT4G16830.2 | 56.322 | 261 | 89 | 8 | 114 | 373 | 28 | 264 | 6.70e-54 | 179 |
| Msa1228680 | AT4G16830.3 | 62.609 | 230 | 72 | 8 | 146 | 373 | 127 | 344 | 5.40e-53 | 179 |
| Msa1228680 | AT5G47210.3 | 47.649 | 319 | 139 | 7 | 1 | 310 | 1 | 300 | 5.56e-50 | 170 |
| Msa1228680 | AT5G47210.2 | 45.247 | 263 | 119 | 5 | 1 | 255 | 1 | 246 | 9.93e-31 | 119 |
Find 173 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTATTTACCTTCAATTT+TGG | 0.033499 | 8_2:+4169769 | Msa1228680:three_prime_UTR |
| TGATCTGAATCTTTGTATTA+TGG | 0.195448 | 8_2:+4166216 | Msa1228680:five_prime_UTR |
| CTCCATCAGTCTTAACATTC+AGG | 0.219102 | 8_2:-4168483 | None:intergenic |
| GCCTTGGTCCAACCCCTTCT+TGG | 0.228084 | 8_2:-4166436 | None:intergenic |
| CCCACGAGAAGGCTCATTTC+TGG | 0.266488 | 8_2:-4167371 | None:intergenic |
| CCAAAATTGAAGGTAAATAA+AGG | 0.298125 | 8_2:-4169769 | None:intergenic |
| CCTTGGTCCAACCCCTTCTT+GGG | 0.313627 | 8_2:-4166435 | None:intergenic |
| AGCGGCGGCTGCAGCGGCGG+CGG | 0.314867 | 8_2:+4166410 | Msa1228680:CDS |
| AGGGGAGGAGGAGGAGGTTA+TGG | 0.315054 | 8_2:+4169638 | Msa1228680:CDS |
| AAAAGGTTACAAAGGTAAAA+AGG | 0.319189 | 8_2:-4169912 | None:intergenic |
| GCCGCATCTTCCTCGCCAGC+AGG | 0.321351 | 8_2:-4167964 | None:intergenic |
| TGACGAGATCTTTGCTAAAC+TGG | 0.327027 | 8_2:+4168567 | Msa1228680:CDS |
| CAGCACCAGTTTGTTTGCCT+TGG | 0.328840 | 8_2:-4166452 | None:intergenic |
| TTTGTGAAATCGTTTGAAAA+TGG | 0.329142 | 8_2:+4166311 | Msa1228680:exon |
| CTTCTTAAAGACTAAAACTT+TGG | 0.343165 | 8_2:+4169809 | Msa1228680:three_prime_UTR |
| CCAGGTGGACGTGGCGGCCG+TGG | 0.350671 | 8_2:+4169590 | Msa1228680:CDS |
| GTGGCGGCCGTGGTGGTTCA+AGG | 0.353598 | 8_2:+4169618 | Msa1228680:CDS |
| CGTGGAGGCGGACGTGGATT+TGG | 0.357551 | 8_2:+4167397 | Msa1228680:CDS |
| TGCCCAGGGTCCTCAATAGA+TGG | 0.358092 | 8_2:-4169689 | None:intergenic |
| CTTGCATGACAGAGGCTTCA+AGG | 0.358313 | 8_2:-4168536 | None:intergenic |
| GGTTCAAGGGGAGGAGGAGG+AGG | 0.364638 | 8_2:+4169632 | Msa1228680:CDS |
| AAGGCGCTGGACGAGGCAAT+TGG | 0.366749 | 8_2:+4167774 | Msa1228680:CDS |
| AGCGGCGGCGGCGCCCAAGA+AGG | 0.371522 | 8_2:+4166422 | Msa1228680:CDS |
| GGCCGTGGTGGTTCAAGGGG+AGG | 0.374722 | 8_2:+4169623 | Msa1228680:CDS |
| CGTGGTGGACGTGGCGGCCG+TGG | 0.375459 | 8_2:+4169608 | Msa1228680:CDS |
| CAAACCACTTCCTCCTTCTC+AGG | 0.378794 | 8_2:+4166500 | Msa1228680:CDS |
| GCGGCGGCGGCGCCCAAGAA+GGG | 0.382118 | 8_2:+4166423 | Msa1228680:CDS |
| CCACGGCCGCCACGTCCACC+TGG | 0.385384 | 8_2:-4169590 | None:intergenic |
| GGAGGAGGAGGAGGTTATGG+TGG | 0.385974 | 8_2:+4169641 | Msa1228680:CDS |
| ATACAAAGATTCAGATCAAA+AGG | 0.396759 | 8_2:-4166211 | None:intergenic |
| CAAAATTGAAGGTAAATAAA+GGG | 0.397664 | 8_2:-4169768 | None:intergenic |
| GCCAACACGATAAGGAGTTC+GGG | 0.404159 | 8_2:-4167554 | None:intergenic |
| CGCCAACACGATAAGGAGTT+CGG | 0.407303 | 8_2:-4167555 | None:intergenic |
| TTTGATCGCCACAGTGGAAC+TGG | 0.408775 | 8_2:+4167643 | Msa1228680:CDS |
| AGGCGCTGGACGAGGCAATT+GGG | 0.410058 | 8_2:+4167775 | Msa1228680:CDS |
| TTTGGACGTGGGCGCGGTGA+TGG | 0.410502 | 8_2:+4167415 | Msa1228680:CDS |
| CTTCATCCTCCTTGCGGCTA+GGG | 0.416049 | 8_2:+4166145 | Msa1228680:five_prime_UTR |
| AGAAAGTGCTGGAGGAGAAA+AGG | 0.418340 | 8_2:+4168455 | Msa1228680:CDS |
| TCTTCATCCTCCTTGCGGCT+AGG | 0.423327 | 8_2:+4166144 | Msa1228680:five_prime_UTR |
| CTAAAACCTCCACGACGATC+AGG | 0.425872 | 8_2:-4167583 | None:intergenic |
| TAGTACTTCTCTCCTTCAGC+AGG | 0.426022 | 8_2:-4169563 | None:intergenic |
| TCCATCAGTCTTAACATTCA+GGG | 0.427109 | 8_2:-4168482 | None:intergenic |
| GGTGGTTCAAGGGGAGGAGG+AGG | 0.428641 | 8_2:+4169629 | Msa1228680:CDS |
| TCCTTCAAAAGATCCTTGAT+TGG | 0.430828 | 8_2:-4167491 | None:intergenic |
| CGGCGGCGGCGCCCAAGAAG+GGG | 0.431009 | 8_2:+4166424 | Msa1228680:CDS |
| CGTGGCGGCCGTGGTGGACG+TGG | 0.431010 | 8_2:+4169599 | Msa1228680:CDS |
| CCTTGATTGGCAGGAGGAGC+AGG | 0.443495 | 8_2:-4167478 | None:intergenic |
| ATTTGCCACCACCCAATGTT+GGG | 0.443512 | 8_2:-4169715 | None:intergenic |
| GAAAGCGGCGGCTGCAGCGG+CGG | 0.446607 | 8_2:+4166407 | Msa1228680:CDS |
| TCATCACCCAACAAATCAAA+AGG | 0.448552 | 8_2:-4166345 | None:intergenic |
| CGTGGTGGTTCAAGGGGAGG+AGG | 0.448615 | 8_2:+4169626 | Msa1228680:CDS |
| GCCCTGAATGTTAAGACTGA+TGG | 0.454183 | 8_2:+4168481 | Msa1228680:CDS |
| CCCAATGTTGGGAATTGCCC+AGG | 0.455228 | 8_2:-4169704 | None:intergenic |
| AGGTAACTGAGCAGGCTTCT+TGG | 0.457831 | 8_2:-4166475 | None:intergenic |
| TCAAAAGATCCTTGATTGGC+AGG | 0.460589 | 8_2:-4167487 | None:intergenic |
| CAGAGAGAACCCAAAATTGA+AGG | 0.468902 | 8_2:-4169779 | None:intergenic |
| TGCTACCGAAGCTGAAGAAA+AGG | 0.475047 | 8_2:+4168017 | Msa1228680:CDS |
| ACAGAAAGCGGCGGCTGCAG+CGG | 0.477455 | 8_2:+4166404 | Msa1228680:CDS |
| AGAAAAGGAGCCTGAGGATA+AGG | 0.478610 | 8_2:+4168032 | Msa1228680:CDS |
| GGGCCGCCGCCAACACGATA+AGG | 0.479088 | 8_2:-4167562 | None:intergenic |
| CTGAGAAGGAGGAAGTGGTT+TGG | 0.479914 | 8_2:-4166499 | None:intergenic |
| CTTCAAGGATTCAAACTCCT+TGG | 0.480682 | 8_2:-4168521 | None:intergenic |
| CGCCACAGTGGAACTGGACG+AGG | 0.482256 | 8_2:+4167649 | Msa1228680:CDS |
| CCTGCTCCTCCTGCCAATCA+AGG | 0.483173 | 8_2:+4167478 | Msa1228680:CDS |
| TGGCGGCCGTGGTGGTTCAA+GGG | 0.485411 | 8_2:+4169619 | Msa1228680:CDS |
| TGGCGATCAAATGTCCTTCG+TGG | 0.486275 | 8_2:-4167631 | None:intergenic |
| CCTGGGCAATTCCCAACATT+GGG | 0.492692 | 8_2:+4169704 | Msa1228680:CDS |
| GGCGCTGGACGAGGCAATTG+GGG | 0.493773 | 8_2:+4167776 | Msa1228680:CDS |
| CGTGGATTTGGACGTGGGCG+CGG | 0.494072 | 8_2:+4167409 | Msa1228680:CDS |
| GCAAAACATAATAAATGAAA+AGG | 0.495634 | 8_2:-4169929 | None:intergenic |
| CATTTGCCACCACCCAATGT+TGG | 0.498127 | 8_2:-4169716 | None:intergenic |
| GAGAGGATTGAAAGAGAGAG+AGG | 0.498334 | 8_2:-4166174 | None:intergenic |
| TTGGACCAAGGCAAACAAAC+TGG | 0.500848 | 8_2:+4166447 | Msa1228680:CDS |
| GCCTGCTGGCGAGGAAGATG+CGG | 0.501941 | 8_2:+4167963 | Msa1228680:CDS |
| CGAGGACAAGCCTGCTGGCG+AGG | 0.505327 | 8_2:+4167954 | Msa1228680:CDS |
| CTCAGGGATCTGACAAGGAC+AGG | 0.506031 | 8_2:+4168690 | Msa1228680:intron |
| GGATTCAAACGTGAAGGCGC+TGG | 0.506174 | 8_2:+4167761 | Msa1228680:CDS |
| GGTTATGGTGGAAATGCATA+TGG | 0.506176 | 8_2:+4169653 | Msa1228680:CDS |
| CAAATCCACGTCCGCCTCCA+CGG | 0.506577 | 8_2:-4167396 | None:intergenic |
| CCCACTGAGAGACGTGGGTA+TGG | 0.509687 | 8_2:+4167526 | Msa1228680:CDS |
| CCCTGGGCAATTCCCAACAT+TGG | 0.510052 | 8_2:+4169703 | Msa1228680:CDS |
| TACTACAACCCAGGTGGACG+TGG | 0.510937 | 8_2:+4169581 | Msa1228680:CDS |
| ATTATTATCAGTTAGAAGAT+CGG | 0.514612 | 8_2:+4169844 | Msa1228680:three_prime_UTR |
| GCCCAGGGTCCTCAATAGAT+GGG | 0.517110 | 8_2:-4169688 | None:intergenic |
| GAAGATGCGGCAGCAGCTGA+TGG | 0.518311 | 8_2:+4167976 | Msa1228680:CDS |
| GGTTTGGAAGGTAACTGAGC+AGG | 0.524762 | 8_2:-4166483 | None:intergenic |
| TTCTCTTTCTTGCATGACAG+AGG | 0.524877 | 8_2:-4168544 | None:intergenic |
| CCGTCATTCACCTTATCCTC+AGG | 0.525275 | 8_2:-4168042 | None:intergenic |
| CCCCGAACTCCTTATCGTGT+TGG | 0.525948 | 8_2:+4167553 | Msa1228680:CDS |
| AGGTAATGAGTTGTCATCAT+TGG | 0.526346 | 8_2:-4167458 | None:intergenic |
| TAAGACTGATGGAGGAAGAA+AGG | 0.527216 | 8_2:+4168492 | Msa1228680:CDS |
| CCAGCCTGAGAAGGAGGAAG+TGG | 0.529041 | 8_2:-4166504 | None:intergenic |
| AAACGTGAAGGCGCTGGACG+AGG | 0.529371 | 8_2:+4167767 | Msa1228680:CDS |
| GACTGATGGAGGAAGAAAGG+TGG | 0.529428 | 8_2:+4168495 | Msa1228680:CDS |
| GGCGGACGTGGATTTGGACG+TGG | 0.530109 | 8_2:+4167403 | Msa1228680:CDS |
| CTCGCCAGCAGGCTTGTCCT+CGG | 0.535730 | 8_2:-4167953 | None:intergenic |
| TGTCTCAGCCCCATCTATTG+AGG | 0.535737 | 8_2:+4169679 | Msa1228680:CDS |
| TGAGAAGGAGAAGGCAAGGA+AGG | 0.535852 | 8_2:+4168727 | Msa1228680:CDS |
| GCCCCATCTATTGAGGACCC+TGG | 0.536097 | 8_2:+4169686 | Msa1228680:CDS |
| GTTGCCGAGGACAAGCCTGC+TGG | 0.537827 | 8_2:+4167949 | Msa1228680:CDS |
| GGTGGACGTGGCGGCCGTGG+TGG | 0.538812 | 8_2:+4169593 | Msa1228680:CDS |
| ACTCCTTATCGTGTTGGCGG+CGG | 0.540379 | 8_2:+4167559 | Msa1228680:CDS |
| GAAGGAGGAAGTGGTTTGGA+AGG | 0.543347 | 8_2:-4166495 | None:intergenic |
| CCCCATCTATTGAGGACCCT+GGG | 0.543966 | 8_2:+4169687 | Msa1228680:CDS |
| GGCGGCCGTGGTGGTTCAAG+GGG | 0.544047 | 8_2:+4169620 | Msa1228680:CDS |
| GGACGTGGGCGCGGTGATGG+TGG | 0.544778 | 8_2:+4167418 | Msa1228680:CDS |
| CCACTTCCTCCTTCTCAGGC+TGG | 0.546116 | 8_2:+4166504 | Msa1228680:CDS |
| GGGCAATTCCCAACATTGGG+TGG | 0.547127 | 8_2:+4169707 | Msa1228680:CDS |
| GGTGGACGTGGCGGCCGTGG+TGG | 0.555306 | 8_2:+4169611 | Msa1228680:CDS |
| AGAGGATTGAAAGAGAGAGA+GGG | 0.555545 | 8_2:-4166173 | None:intergenic |
| CCCAAGAAGGGGTTGGACCA+AGG | 0.556309 | 8_2:+4166435 | Msa1228680:CDS |
| AACTGACCAGCCTGAGAAGG+AGG | 0.556972 | 8_2:-4166510 | None:intergenic |
| TACAAAGATTCAGATCAAAA+GGG | 0.567728 | 8_2:-4166210 | None:intergenic |
| CAGCAGCAATCAACTGTGAA+GGG | 0.568248 | 8_2:-4166377 | None:intergenic |
| CGAGTCTAACATATTCCGCA+TGG | 0.568575 | 8_2:-4170081 | None:intergenic |
| AGCAATGGTGAAGCTGGTGA+AGG | 0.568688 | 8_2:+4167604 | Msa1228680:CDS |
| CGAACTCCTTATCGTGTTGG+CGG | 0.569659 | 8_2:+4167556 | Msa1228680:CDS |
| CACGGCCGCCACGTCCACCT+GGG | 0.570136 | 8_2:-4169589 | None:intergenic |
| CTATTGAGAAGGAGAAGGCA+AGG | 0.571752 | 8_2:+4168723 | Msa1228680:CDS |
| GGCGATCAAATGTCCTTCGT+GGG | 0.574921 | 8_2:-4167630 | None:intergenic |
| TCCAGAAATGAGCCTTCTCG+TGG | 0.577714 | 8_2:+4167370 | Msa1228680:CDS |
| GGAAGAATATGAGAAAGTGC+TGG | 0.577776 | 8_2:+4168444 | Msa1228680:CDS |
| CAATTCCCAACATTGGGTGG+TGG | 0.578147 | 8_2:+4169710 | Msa1228680:CDS |
| GCGGACGTGGATTTGGACGT+GGG | 0.578764 | 8_2:+4167404 | Msa1228680:CDS |
| TGCTGCTGAGCAACAGAAAG+CGG | 0.579104 | 8_2:+4166392 | Msa1228680:CDS |
| GGCGGCGCCCAAGAAGGGGT+TGG | 0.580764 | 8_2:+4166428 | Msa1228680:CDS |
| GAAAACTGACCAGCCTGAGA+AGG | 0.581999 | 8_2:-4166513 | None:intergenic |
| TCAGCAGCAATCAACTGTGA+AGG | 0.584157 | 8_2:-4166378 | None:intergenic |
| AAAATTGAAGGTAAATAAAG+GGG | 0.590004 | 8_2:-4169767 | None:intergenic |
| AATAAATGAAAAGGTTACAA+AGG | 0.592651 | 8_2:-4169920 | None:intergenic |
| TTCTCCTCAGGGATCTGACA+AGG | 0.595814 | 8_2:+4168685 | Msa1228680:intron |
| CAGAAATGAGCCTTCTCGTG+GGG | 0.596718 | 8_2:+4167372 | Msa1228680:CDS |
| CATCACCCAACAAATCAAAA+GGG | 0.597215 | 8_2:-4166344 | None:intergenic |
| TCTCTTCTTCATCCTCCTTG+CGG | 0.597607 | 8_2:+4166139 | Msa1228680:five_prime_UTR |
| GGCAGCAGCTGATGGAAACA+AGG | 0.598627 | 8_2:+4167984 | Msa1228680:CDS |
| CTGAATGTTAAGACTGATGG+AGG | 0.603264 | 8_2:+4168484 | Msa1228680:CDS |
| GAGTTTCTGAAGCCTGCTGA+AGG | 0.605411 | 8_2:+4169551 | Msa1228680:CDS |
| TAAAACCTCCACGACGATCA+GGG | 0.608619 | 8_2:-4167582 | None:intergenic |
| CACGGCCGCCACGTCCACCA+CGG | 0.609163 | 8_2:-4169607 | None:intergenic |
| GCGCAAAGATGCTATTGAGA+AGG | 0.612476 | 8_2:+4168712 | Msa1228680:CDS |
| AGCTGAAGAAAAGGAGCCTG+AGG | 0.613693 | 8_2:+4168026 | Msa1228680:CDS |
| GGCGGCCGTGGTGGACGTGG+CGG | 0.614950 | 8_2:+4169602 | Msa1228680:CDS |
| GCGAATCCCACTGAGAGACG+TGG | 0.615709 | 8_2:+4167520 | Msa1228680:CDS |
| TGCTGAGCAACAGAAAGCGG+CGG | 0.620891 | 8_2:+4166395 | Msa1228680:CDS |
| AGATGCTATTGAGAAGGAGA+AGG | 0.623347 | 8_2:+4168718 | Msa1228680:CDS |
| AGAATATGAGAAAGTGCTGG+AGG | 0.623694 | 8_2:+4168447 | Msa1228680:CDS |
| CCAGAAATGAGCCTTCTCGT+GGG | 0.625749 | 8_2:+4167371 | Msa1228680:CDS |
| CCCAGGGTCCTCAATAGATG+GGG | 0.629528 | 8_2:-4169687 | None:intergenic |
| AGAAATGAGCCTTCTCGTGG+GGG | 0.630486 | 8_2:+4167373 | Msa1228680:CDS |
| CCATACCCACGTCTCTCAGT+GGG | 0.632896 | 8_2:-4167526 | None:intergenic |
| AGGGTATAAAGAGAATTGAG+AGG | 0.633527 | 8_2:-4166191 | None:intergenic |
| GGAGAGAAGTACTACAACCC+AGG | 0.637798 | 8_2:+4169572 | Msa1228680:CDS |
| CTCCTCCCCTTGAACCACCA+CGG | 0.641254 | 8_2:-4169625 | None:intergenic |
| CCAATGTTGGGAATTGCCCA+GGG | 0.645317 | 8_2:-4169703 | None:intergenic |
| AGTGGTGGATTCAAACGTGA+AGG | 0.648451 | 8_2:+4167755 | Msa1228680:intron |
| TACAACCCAGGTGGACGTGG+CGG | 0.649155 | 8_2:+4169584 | Msa1228680:CDS |
| AAAGATCCTTGATTGGCAGG+AGG | 0.651213 | 8_2:-4167484 | None:intergenic |
| AAATTGAAGGTAAATAAAGG+GGG | 0.651786 | 8_2:-4169766 | None:intergenic |
| CGAATCCCACTGAGAGACGT+GGG | 0.652274 | 8_2:+4167521 | Msa1228680:CDS |
| AACTGAAAAGAATGTTGCCG+AGG | 0.652519 | 8_2:+4167936 | Msa1228680:CDS |
| AGGAAGAAAGGTGGATACCA+AGG | 0.658721 | 8_2:+4168504 | Msa1228680:CDS |
| CTGGTGAAGGACGCCCACGA+AGG | 0.659266 | 8_2:+4167617 | Msa1228680:CDS |
| GGCGGCGGCCCTGATCGTCG+TGG | 0.663680 | 8_2:+4167574 | Msa1228680:CDS |
| ACCATACCCACGTCTCTCAG+TGG | 0.665677 | 8_2:-4167527 | None:intergenic |
| CCAACACGATAAGGAGTTCG+GGG | 0.670925 | 8_2:-4167553 | None:intergenic |
| GGCGGCCCTGATCGTCGTGG+AGG | 0.673268 | 8_2:+4167577 | Msa1228680:CDS |
| AATTGAAGGTAAATAAAGGG+GGG | 0.678737 | 8_2:-4169765 | None:intergenic |
| TGTGATACAGGAGATGACAC+TGG | 0.683930 | 8_2:+4168423 | Msa1228680:intron |
| GTGTAGGGTGACTGACGAAG+TGG | 0.691129 | 8_2:+4167906 | Msa1228680:intron |
| GCCACAGTGGAACTGGACGA+GGG | 0.706351 | 8_2:+4167650 | Msa1228680:CDS |
| AGGACATTTGATCGCCACAG+TGG | 0.715887 | 8_2:+4167637 | Msa1228680:CDS |
| GAGAAGTACTACAACCCAGG+TGG | 0.715968 | 8_2:+4169575 | Msa1228680:CDS |
| ACCCTCGTCCAGTTCCACTG+TGG | 0.734575 | 8_2:-4167651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTGTAATTTAATTTAAT+GGG | + | chr8_2:4166602-4166621 | Msa1228680:intron | 10.0% |
| !! | TTATTTGTTTCAAATTAAAA+TGG | + | chr8_2:4169154-4169173 | Msa1228680:intron | 10.0% |
| !! | CAAAAAAAAAGAATAACAAA+GGG | + | chr8_2:4166276-4166295 | Msa1228680:five_prime_UTR | 15.0% |
| !!! | GCTTTTGTAATTTAATTTAA+TGG | + | chr8_2:4166601-4166620 | Msa1228680:intron | 15.0% |
| !!! | TAATTTATTTTTACAGAATG+TGG | + | chr8_2:4166692-4166711 | Msa1228680:intron | 15.0% |
| !!! | AATTTATTTTTACAGAATGT+GGG | + | chr8_2:4166693-4166712 | Msa1228680:intron | 15.0% |
| !!! | TTTATTGTTAATTTTGTGTA+GGG | + | chr8_2:4167891-4167910 | Msa1228680:intron | 15.0% |
| !! | AAACAAATAAATTCAAAAGT+TGG | - | chr8_2:4169144-4169163 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTGTTGTAAATTT+AGG | + | chr8_2:4169873-4169892 | Msa1228680:three_prime_UTR | 15.0% |
| !!! | CCTTTGTTATTCTTTTTTTT+TGG | - | chr8_2:4166278-4166297 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAGAATAACAA+AGG | + | chr8_2:4166275-4166294 | Msa1228680:five_prime_UTR | 20.0% |
| !!! | TTTATTAGTTTCACGTTTTT+GGG | + | chr8_2:4166562-4166581 | Msa1228680:intron | 20.0% |
| !!! | GTAATTTAATTTAATGGGTT+TGG | + | chr8_2:4166607-4166626 | Msa1228680:intron | 20.0% |
| !!! | TTTTATCAATTTGTATGCTT+AGG | + | chr8_2:4166756-4166775 | Msa1228680:intron | 20.0% |
| !!! | AAGATTGATGTTGTTTTAAT+GGG | + | chr8_2:4166784-4166803 | Msa1228680:intron | 20.0% |
| !! | TTATATACTTCCAGAAAATA+TGG | + | chr8_2:4166821-4166840 | Msa1228680:intron | 20.0% |
| !! | TATATACTTCCAGAAAATAT+GGG | + | chr8_2:4166822-4166841 | Msa1228680:intron | 20.0% |
| !! | CAATAAATGCAAAAGAAAAT+TGG | + | chr8_2:4167130-4167149 | Msa1228680:intron | 20.0% |
| !! | AAAAAGTTAACTAACACAAA+AGG | - | chr8_2:4167227-4167246 | None:intergenic | 20.0% |
| !!! | CTTTATTGTTAATTTTGTGT+AGG | + | chr8_2:4167890-4167909 | Msa1228680:intron | 20.0% |
| !!! | TTGATGATTTTATCCTTTAT+TGG | + | chr8_2:4168244-4168263 | Msa1228680:intron | 20.0% |
| !! | TTTAAAAAGTGATCCAATAA+AGG | - | chr8_2:4168260-4168279 | None:intergenic | 20.0% |
| !! | ACATTATCACTAAAAAAACT+TGG | - | chr8_2:4168631-4168650 | None:intergenic | 20.0% |
| !! | GGAAAATGTAAATACATTTA+TGG | - | chr8_2:4168654-4168673 | None:intergenic | 20.0% |
| !! | TAAATTCAAAAGTTGGAAAA+TGG | - | chr8_2:4169137-4169156 | None:intergenic | 20.0% |
| !!! | ATGCCTCATTTTATTTTTAT+CGG | + | chr8_2:4169222-4169241 | Msa1228680:intron | 20.0% |
| !!! | CTTTTCTCTAATTTGTTTTA+AGG | + | chr8_2:4169359-4169378 | Msa1228680:intron | 20.0% |
| !! | AAAATTGAAGGTAAATAAAG+GGG | - | chr8_2:4169770-4169789 | None:intergenic | 20.0% |
| !! | CAAAATTGAAGGTAAATAAA+GGG | - | chr8_2:4169771-4169790 | None:intergenic | 20.0% |
| !!! | CTTTATTTACCTTCAATTTT+GGG | + | chr8_2:4169770-4169789 | Msa1228680:three_prime_UTR | 20.0% |
| !! | ATTATTATCAGTTAGAAGAT+CGG | + | chr8_2:4169844-4169863 | Msa1228680:three_prime_UTR | 20.0% |
| !! | AATAAATGAAAAGGTTACAA+AGG | - | chr8_2:4169923-4169942 | None:intergenic | 20.0% |
| !! | GCAAAACATAATAAATGAAA+AGG | - | chr8_2:4169932-4169951 | None:intergenic | 20.0% |
| !!! | TTTTTTCAAATATATCCATG+CGG | + | chr8_2:4170066-4170085 | Msa1228680:three_prime_UTR | 20.0% |
| ! | TACAAAGATTCAGATCAAAA+GGG | - | chr8_2:4166213-4166232 | None:intergenic | 25.0% |
| ! | ATACAAAGATTCAGATCAAA+AGG | - | chr8_2:4166214-4166233 | None:intergenic | 25.0% |
| ! | TGATCTGAATCTTTGTATTA+TGG | + | chr8_2:4166216-4166235 | Msa1228680:five_prime_UTR | 25.0% |
| ! | TTTGTGAAATCGTTTGAAAA+TGG | + | chr8_2:4166311-4166330 | Msa1228680:exon | 25.0% |
| !!! | AATTAACCCTTTTGATTTGT+TGG | + | chr8_2:4166338-4166357 | Msa1228680:CDS | 25.0% |
| !!! | ATTAACCCTTTTGATTTGTT+GGG | + | chr8_2:4166339-4166358 | Msa1228680:CDS | 25.0% |
| !!! | CTTTATTAGTTTCACGTTTT+TGG | + | chr8_2:4166561-4166580 | Msa1228680:intron | 25.0% |
| !!! | GTTTTTGGGTTATGTAAAAA+TGG | + | chr8_2:4166576-4166595 | Msa1228680:intron | 25.0% |
| !!! | TTATTTGCTTTTACAGAATG+TGG | + | chr8_2:4166642-4166661 | Msa1228680:intron | 25.0% |
| !!! | TATTTGCTTTTACAGAATGT+GGG | + | chr8_2:4166643-4166662 | Msa1228680:intron | 25.0% |
| !!! | TGTTGATTTTGTTTGATGTT+TGG | + | chr8_2:4166730-4166749 | Msa1228680:intron | 25.0% |
| !!! | GAAGATTGATGTTGTTTTAA+TGG | + | chr8_2:4166783-4166802 | Msa1228680:intron | 25.0% |
| !!! | TGTTTTAGGGTTTAAAGTAT+TGG | + | chr8_2:4166914-4166933 | Msa1228680:intron | 25.0% |
| ! | GATTTATTAGTGTCAATGAT+TGG | + | chr8_2:4166936-4166955 | Msa1228680:intron | 25.0% |
| ! | TATCTGATGTGTATTTGAAA+TGG | + | chr8_2:4167051-4167070 | Msa1228680:intron | 25.0% |
| !!! | CCTTACTTTTAAAATAGTCA+TGG | - | chr8_2:4167094-4167113 | None:intergenic | 25.0% |
| !!! | CCATGACTATTTTAAAAGTA+AGG | + | chr8_2:4167091-4167110 | Msa1228680:intron | 25.0% |
| !! | AATTTTGTGATAACCAGAAT+TGG | + | chr8_2:4167156-4167175 | Msa1228680:intron | 25.0% |
| ! | AATACATCAACAAAGCAATA+CGG | - | chr8_2:4167196-4167215 | None:intergenic | 25.0% |
| !! | TGTGTTAGTTAACTTTTTGT+TGG | + | chr8_2:4167229-4167248 | Msa1228680:intron | 25.0% |
| ! | TGGAAGAAAAATCACTAATA+AGG | - | chr8_2:4167694-4167713 | None:intergenic | 25.0% |
| ! | AACAAAGATAGGAAAATAAG+TGG | - | chr8_2:4167714-4167733 | None:intergenic | 25.0% |
| ! | TTCAAAATCAAATTCAGCTT+CGG | + | chr8_2:4168145-4168164 | Msa1228680:intron | 25.0% |
| !! | AATTTTCAATTTTCTCCTCA+GGG | + | chr8_2:4168674-4168693 | Msa1228680:intron | 25.0% |
| ! | GCGGTAATATAACATATTAT+AGG | - | chr8_2:4168842-4168861 | None:intergenic | 25.0% |
| ! | CTTAAAATCTCAAATGAAAG+CGG | - | chr8_2:4168861-4168880 | None:intergenic | 25.0% |
| ! | ATGTTACTAACCTATAATAG+TGG | + | chr8_2:4168891-4168910 | Msa1228680:intron | 25.0% |
| ! | TCTCATATATCCACTATTAT+AGG | - | chr8_2:4168904-4168923 | None:intergenic | 25.0% |
| !! | TAACTTTTATATCCTGTACA+AGG | + | chr8_2:4168989-4169008 | Msa1228680:intron | 25.0% |
| ! | CTACCGATAAAAATAAAATG+AGG | - | chr8_2:4169228-4169247 | None:intergenic | 25.0% |
| ! | AAATCAAGTAAATGGTAAAC+TGG | - | chr8_2:4169295-4169314 | None:intergenic | 25.0% |
| ! | AGAGTGAAAAATCAAGTAAA+TGG | - | chr8_2:4169303-4169322 | None:intergenic | 25.0% |
| !! | ATTTACTTGATTTTTCACTC+TGG | + | chr8_2:4169302-4169321 | Msa1228680:intron | 25.0% |
| !!! | GTTTTGCTTGTTATTGATTA+TGG | + | chr8_2:4169434-4169453 | Msa1228680:intron | 25.0% |
| ! | ACTAATGTGCTTTCATTTAT+TGG | + | chr8_2:4169498-4169517 | Msa1228680:intron | 25.0% |
| ! | AAATTGAAGGTAAATAAAGG+GGG | - | chr8_2:4169769-4169788 | None:intergenic | 25.0% |
| ! | CCAAAATTGAAGGTAAATAA+AGG | - | chr8_2:4169772-4169791 | None:intergenic | 25.0% |
| !!! | CCTTTATTTACCTTCAATTT+TGG | + | chr8_2:4169769-4169788 | Msa1228680:three_prime_UTR | 25.0% |
| ! | CTTCTTAAAGACTAAAACTT+TGG | + | chr8_2:4169809-4169828 | Msa1228680:three_prime_UTR | 25.0% |
| ! | AAAAGGTTACAAAGGTAAAA+AGG | - | chr8_2:4169915-4169934 | None:intergenic | 25.0% |
| ! | CATTCAAAACCCATATTTTC+TGG | - | chr8_2:4166834-4166853 | None:intergenic | 30.0% |
| ! | TGTTGATTGTGTTTGATGTA+TGG | + | chr8_2:4166877-4166896 | Msa1228680:intron | 30.0% |
| ! | ACTGTTTACCAATGTGTTTT+AGG | + | chr8_2:4166900-4166919 | Msa1228680:intron | 30.0% |
| ! | CTGTTTACCAATGTGTTTTA+GGG | + | chr8_2:4166901-4166920 | Msa1228680:intron | 30.0% |
| CTTTAAACCCTAAAACACAT+TGG | - | chr8_2:4166911-4166930 | None:intergenic | 30.0% | |
| !! | TTAGTGTCAATGATTGGTTT+AGG | + | chr8_2:4166942-4166961 | Msa1228680:intron | 30.0% |
| ACAATTTCATCTTCCAATTC+TGG | - | chr8_2:4167172-4167191 | None:intergenic | 30.0% | |
| AGAAAAATATCAGCATACGA+GGG | - | chr8_2:4167324-4167343 | None:intergenic | 30.0% | |
| AAGAAAAATATCAGCATACG+AGG | - | chr8_2:4167325-4167344 | None:intergenic | 30.0% | |
| ! | CAGTTGATATCAACAAAGAT+AGG | - | chr8_2:4167725-4167744 | None:intergenic | 30.0% |
| CTGCAAATTGAGAGTAAAAA+GGG | - | chr8_2:4168606-4168625 | None:intergenic | 30.0% | |
| ACTGCAAATTGAGAGTAAAA+AGG | - | chr8_2:4168607-4168626 | None:intergenic | 30.0% | |
| CTGAGGAGAAAATTGAAAAT+TGG | - | chr8_2:4168675-4168694 | None:intergenic | 30.0% | |
| ! | CAATTTTCAATTTTCTCCTC+AGG | + | chr8_2:4168673-4168692 | Msa1228680:intron | 30.0% |
| ATATGAGATGATAAAATGCG+AGG | + | chr8_2:4168916-4168935 | Msa1228680:intron | 30.0% | |
| ! | TTTTAGTGTTCTTCAACCAA+CGG | - | chr8_2:4168955-4168974 | None:intergenic | 30.0% |
| AACAACAATTGCAAGAAAGT+AGG | - | chr8_2:4169088-4169107 | None:intergenic | 30.0% | |
| !!! | TCTTGCAATTGTTGTTGTTT+TGG | + | chr8_2:4169092-4169111 | Msa1228680:intron | 30.0% |
| GGTAAACTGGTATTTCATAA+AGG | - | chr8_2:4169282-4169301 | None:intergenic | 30.0% | |
| TTTGCTTTCGTTAGTGATTA+TGG | + | chr8_2:4169391-4169410 | Msa1228680:intron | 30.0% | |
| TATGGCATTGTTGTCTTTAT+TGG | + | chr8_2:4169409-4169428 | Msa1228680:intron | 30.0% | |
| TTATTGGACTTGACATTGTT+AGG | + | chr8_2:4169514-4169533 | Msa1228680:intron | 30.0% | |
| AATTGAAGGTAAATAAAGGG+GGG | - | chr8_2:4169768-4169787 | None:intergenic | 30.0% | |
| !!! | TTACCATGTTTTGACATTCT+TGG | + | chr8_2:4169956-4169975 | Msa1228680:three_prime_UTR | 30.0% |
| !!! | TACCATGTTTTGACATTCTT+GGG | + | chr8_2:4169957-4169976 | Msa1228680:three_prime_UTR | 30.0% |
| ! | AGACTCGATGAAACTTTTTA+TGG | + | chr8_2:4170097-4170116 | Msa1228680:three_prime_UTR | 30.0% |
| AGGGTATAAAGAGAATTGAG+AGG | - | chr8_2:4166194-4166213 | None:intergenic | 35.0% | |
| CATCACCCAACAAATCAAAA+GGG | - | chr8_2:4166347-4166366 | None:intergenic | 35.0% | |
| TCATCACCCAACAAATCAAA+AGG | - | chr8_2:4166348-4166367 | None:intergenic | 35.0% | |
| !! | AATGATTGGTTTAGGTGATG+TGG | + | chr8_2:4166950-4166969 | Msa1228680:intron | 35.0% |
| !! | ATGATTGGTTTAGGTGATGT+GGG | + | chr8_2:4166951-4166970 | Msa1228680:intron | 35.0% |
| AGTAAGGTTTCTTTGTTGAG+AGG | + | chr8_2:4167107-4167126 | Msa1228680:intron | 35.0% | |
| AGGTAATGAGTTGTCATCAT+TGG | - | chr8_2:4167461-4167480 | None:intergenic | 35.0% | |
| TCCTTCAAAAGATCCTTGAT+TGG | - | chr8_2:4167494-4167513 | None:intergenic | 35.0% | |
| ATCAACTGTTCAATTTGCAG+TGG | + | chr8_2:4167737-4167756 | Msa1228680:intron | 35.0% | |
| TGTTCATAAGTTTGTGACTG+AGG | + | chr8_2:4168283-4168302 | Msa1228680:intron | 35.0% | |
| GAACTTGAATTGTGTGATAC+AGG | + | chr8_2:4168411-4168430 | Msa1228680:intron | 35.0% | |
| TCCATCAGTCTTAACATTCA+GGG | - | chr8_2:4168485-4168504 | None:intergenic | 35.0% | |
| CATGGAAGTAAAAGAAGCAA+TGG | - | chr8_2:4168778-4168797 | None:intergenic | 35.0% | |
| !!! | TTGATTTTTCACTCTGGAGT+TGG | + | chr8_2:4169308-4169327 | Msa1228680:intron | 35.0% |
| AGGTAAAAAGGACAGTAAGA+AGG | - | chr8_2:4169903-4169922 | None:intergenic | 35.0% | |
| !!! | ACCATGTTTTGACATTCTTG+GGG | + | chr8_2:4169958-4169977 | Msa1228680:three_prime_UTR | 35.0% |
| AGAGGATTGAAAGAGAGAGA+GGG | - | chr8_2:4166176-4166195 | None:intergenic | 40.0% | |
| !! | TTCCTGTGCTATTGATAGTG+AGG | + | chr8_2:4167344-4167363 | Msa1228680:intron | 40.0% |
| !! | TCCTGTGCTATTGATAGTGA+GGG | + | chr8_2:4167345-4167364 | Msa1228680:intron | 40.0% |
| TCAAAAGATCCTTGATTGGC+AGG | - | chr8_2:4167490-4167509 | None:intergenic | 40.0% | |
| ! | GCCAATCAAGGATCTTTTGA+AGG | + | chr8_2:4167490-4167509 | Msa1228680:CDS | 40.0% |
| AACTGTTCAATTTGCAGTGG+TGG | + | chr8_2:4167740-4167759 | Msa1228680:intron | 40.0% | |
| AACTGAAAAGAATGTTGCCG+AGG | + | chr8_2:4167936-4167955 | Msa1228680:CDS | 40.0% | |
| AGTTGCAGATTCAAGACAGT+TGG | - | chr8_2:4168086-4168105 | None:intergenic | 40.0% | |
| ! | GGAAGAATATGAGAAAGTGC+TGG | + | chr8_2:4168444-4168463 | Msa1228680:CDS | 40.0% |
| !! | AGAATATGAGAAAGTGCTGG+AGG | + | chr8_2:4168447-4168466 | Msa1228680:CDS | 40.0% |
| CTCCATCAGTCTTAACATTC+AGG | - | chr8_2:4168486-4168505 | None:intergenic | 40.0% | |
| CTGAATGTTAAGACTGATGG+AGG | + | chr8_2:4168484-4168503 | Msa1228680:CDS | 40.0% | |
| TAAGACTGATGGAGGAAGAA+AGG | + | chr8_2:4168492-4168511 | Msa1228680:CDS | 40.0% | |
| CTTCAAGGATTCAAACTCCT+TGG | - | chr8_2:4168524-4168543 | None:intergenic | 40.0% | |
| TTCTCTTTCTTGCATGACAG+AGG | - | chr8_2:4168547-4168566 | None:intergenic | 40.0% | |
| TGACGAGATCTTTGCTAAAC+TGG | + | chr8_2:4168567-4168586 | Msa1228680:CDS | 40.0% | |
| AGATGCTATTGAGAAGGAGA+AGG | + | chr8_2:4168718-4168737 | Msa1228680:CDS | 40.0% | |
| GCAGAAGAAATTGAAGCTCA+TGG | - | chr8_2:4168796-4168815 | None:intergenic | 40.0% | |
| AGGAAAAACATCCATTCCGT+TGG | + | chr8_2:4168936-4168955 | Msa1228680:intron | 40.0% | |
| GATAACTACGATCCTTGTAC+AGG | - | chr8_2:4169004-4169023 | None:intergenic | 40.0% | |
| ! | GGTTATGGTGGAAATGCATA+TGG | + | chr8_2:4169653-4169672 | Msa1228680:CDS | 40.0% |
| AGGTAAATAAAGGGGGGATA+GGG | - | chr8_2:4169762-4169781 | None:intergenic | 40.0% | |
| AAGGTAAATAAAGGGGGGAT+AGG | - | chr8_2:4169763-4169782 | None:intergenic | 40.0% | |
| CAGAGAGAACCCAAAATTGA+AGG | - | chr8_2:4169782-4169801 | None:intergenic | 40.0% | |
| !!! | CCATGTTTTGACATTCTTGG+GGG | + | chr8_2:4169959-4169978 | Msa1228680:three_prime_UTR | 40.0% |
| TGACATTCTTGGGGGTTATA+TGG | + | chr8_2:4169967-4169986 | Msa1228680:three_prime_UTR | 40.0% | |
| TCTCTTCTTCATCCTCCTTG+CGG | + | chr8_2:4166139-4166158 | Msa1228680:five_prime_UTR | 45.0% | |
| GAGAGGATTGAAAGAGAGAG+AGG | - | chr8_2:4166177-4166196 | None:intergenic | 45.0% | |
| CAGCAGCAATCAACTGTGAA+GGG | - | chr8_2:4166380-4166399 | None:intergenic | 45.0% | |
| TCAGCAGCAATCAACTGTGA+AGG | - | chr8_2:4166381-4166400 | None:intergenic | 45.0% | |
| TTGGACCAAGGCAAACAAAC+TGG | + | chr8_2:4166447-4166466 | Msa1228680:CDS | 45.0% | |
| TGTGTTCACGTGTTTGTGTG+TGG | + | chr8_2:4167013-4167032 | Msa1228680:intron | 45.0% | |
| TCCCTCACTATCAATAGCAC+AGG | - | chr8_2:4167349-4167368 | None:intergenic | 45.0% | |
| AAAGATCCTTGATTGGCAGG+AGG | - | chr8_2:4167487-4167506 | None:intergenic | 45.0% | |
| TAAAACCTCCACGACGATCA+GGG | - | chr8_2:4167585-4167604 | None:intergenic | 45.0% | |
| !! | GGTTTTAGCAATGGTGAAGC+TGG | + | chr8_2:4167598-4167617 | Msa1228680:CDS | 45.0% |
| !! | AGTGGTGGATTCAAACGTGA+AGG | + | chr8_2:4167755-4167774 | Msa1228680:intron | 45.0% |
| ! | TTTTCTTCAGCTTCGGTAGC+AGG | - | chr8_2:4168018-4168037 | None:intergenic | 45.0% |
| TGCTACCGAAGCTGAAGAAA+AGG | + | chr8_2:4168017-4168036 | Msa1228680:CDS | 45.0% | |
| ! | AGGCTCCTTTTCTTCAGCTT+CGG | - | chr8_2:4168025-4168044 | None:intergenic | 45.0% |
| AGAAAAGGAGCCTGAGGATA+AGG | + | chr8_2:4168032-4168051 | Msa1228680:CDS | 45.0% | |
| CCTGAGGATAAGGTGAATGA+CGG | + | chr8_2:4168042-4168061 | Msa1228680:intron | 45.0% | |
| TGTGATACAGGAGATGACAC+TGG | + | chr8_2:4168423-4168442 | Msa1228680:intron | 45.0% | |
| !! | AGAAAGTGCTGGAGGAGAAA+AGG | + | chr8_2:4168455-4168474 | Msa1228680:CDS | 45.0% |
| GCCCTGAATGTTAAGACTGA+TGG | + | chr8_2:4168481-4168500 | Msa1228680:CDS | 45.0% | |
| AGGAAGAAAGGTGGATACCA+AGG | + | chr8_2:4168504-4168523 | Msa1228680:CDS | 45.0% | |
| GCGCAAAGATGCTATTGAGA+AGG | + | chr8_2:4168712-4168731 | Msa1228680:CDS | 45.0% | |
| CTATTGAGAAGGAGAAGGCA+AGG | + | chr8_2:4168723-4168742 | Msa1228680:CDS | 45.0% | |
| GTGTTCTTCAACCAACGGAA+TGG | - | chr8_2:4168950-4168969 | None:intergenic | 45.0% | |
| TAGTACTTCTCTCCTTCAGC+AGG | - | chr8_2:4169566-4169585 | None:intergenic | 45.0% | |
| ATTTGCCACCACCCAATGTT+GGG | - | chr8_2:4169718-4169737 | None:intergenic | 45.0% | |
| GGTAAATAAAGGGGGGATAG+GGG | - | chr8_2:4169761-4169780 | None:intergenic | 45.0% | |
| CCCCCAAGAATGTCAAAACA+TGG | - | chr8_2:4169962-4169981 | None:intergenic | 45.0% | |
| CATTCTTGGGGGTTATATGG+TGG | + | chr8_2:4169970-4169989 | Msa1228680:three_prime_UTR | 45.0% | |
| CGAGTCTAACATATTCCGCA+TGG | - | chr8_2:4170084-4170103 | None:intergenic | 45.0% | |
| TGCTGCTGAGCAACAGAAAG+CGG | + | chr8_2:4166392-4166411 | Msa1228680:CDS | 50.0% | |
| ! | CAGCACCAGTTTGTTTGCCT+TGG | - | chr8_2:4166455-4166474 | None:intergenic | 50.0% |
| AGGTAACTGAGCAGGCTTCT+TGG | - | chr8_2:4166478-4166497 | None:intergenic | 50.0% | |
| GGTTTGGAAGGTAACTGAGC+AGG | - | chr8_2:4166486-4166505 | None:intergenic | 50.0% | |
| ! | GAAGGAGGAAGTGGTTTGGA+AGG | - | chr8_2:4166498-4166517 | None:intergenic | 50.0% |
| CTGAGAAGGAGGAAGTGGTT+TGG | - | chr8_2:4166502-4166521 | None:intergenic | 50.0% | |
| CAAACCACTTCCTCCTTCTC+AGG | + | chr8_2:4166500-4166519 | Msa1228680:CDS | 50.0% | |
| GAAAACTGACCAGCCTGAGA+AGG | - | chr8_2:4166516-4166535 | None:intergenic | 50.0% | |
| TCCAGAAATGAGCCTTCTCG+TGG | + | chr8_2:4167370-4167389 | Msa1228680:CDS | 50.0% | |
| CCAGAAATGAGCCTTCTCGT+GGG | + | chr8_2:4167371-4167390 | Msa1228680:CDS | 50.0% | |
| CAGAAATGAGCCTTCTCGTG+GGG | + | chr8_2:4167372-4167391 | Msa1228680:CDS | 50.0% | |
| AGAAATGAGCCTTCTCGTGG+GGG | + | chr8_2:4167373-4167392 | Msa1228680:CDS | 50.0% | |
| CCAACACGATAAGGAGTTCG+GGG | - | chr8_2:4167556-4167575 | None:intergenic | 50.0% | |
| GCCAACACGATAAGGAGTTC+GGG | - | chr8_2:4167557-4167576 | None:intergenic | 50.0% | |
| CGCCAACACGATAAGGAGTT+CGG | - | chr8_2:4167558-4167577 | None:intergenic | 50.0% | |
| CGAACTCCTTATCGTGTTGG+CGG | + | chr8_2:4167556-4167575 | Msa1228680:CDS | 50.0% | |
| CTAAAACCTCCACGACGATC+AGG | - | chr8_2:4167586-4167605 | None:intergenic | 50.0% | |
| !! | CGTCGTGGAGGTTTTAGCAA+TGG | + | chr8_2:4167589-4167608 | Msa1228680:CDS | 50.0% |
| AGCAATGGTGAAGCTGGTGA+AGG | + | chr8_2:4167604-4167623 | Msa1228680:CDS | 50.0% | |
| GGCGATCAAATGTCCTTCGT+GGG | - | chr8_2:4167633-4167652 | None:intergenic | 50.0% | |
| TGGCGATCAAATGTCCTTCG+TGG | - | chr8_2:4167634-4167653 | None:intergenic | 50.0% | |
| AGGACATTTGATCGCCACAG+TGG | + | chr8_2:4167637-4167656 | Msa1228680:CDS | 50.0% | |
| TTTGATCGCCACAGTGGAAC+TGG | + | chr8_2:4167643-4167662 | Msa1228680:CDS | 50.0% | |
| AGCTGAAGAAAAGGAGCCTG+AGG | + | chr8_2:4168026-4168045 | Msa1228680:CDS | 50.0% | |
| CCGTCATTCACCTTATCCTC+AGG | - | chr8_2:4168045-4168064 | None:intergenic | 50.0% | |
| GACTGATGGAGGAAGAAAGG+TGG | + | chr8_2:4168495-4168514 | Msa1228680:CDS | 50.0% | |
| CTTGCATGACAGAGGCTTCA+AGG | - | chr8_2:4168539-4168558 | None:intergenic | 50.0% | |
| TTCTCCTCAGGGATCTGACA+AGG | + | chr8_2:4168685-4168704 | Msa1228680:intron | 50.0% | |
| TGAGAAGGAGAAGGCAAGGA+AGG | + | chr8_2:4168727-4168746 | Msa1228680:CDS | 50.0% | |
| !! | GAGTTTCTGAAGCCTGCTGA+AGG | + | chr8_2:4169551-4169570 | Msa1228680:CDS | 50.0% |
| !! | GGAGAGAAGTACTACAACCC+AGG | + | chr8_2:4169572-4169591 | Msa1228680:CDS | 50.0% |
| !! | GAGAAGTACTACAACCCAGG+TGG | + | chr8_2:4169575-4169594 | Msa1228680:CDS | 50.0% |
| TGTCTCAGCCCCATCTATTG+AGG | + | chr8_2:4169679-4169698 | Msa1228680:CDS | 50.0% | |
| CCAATGTTGGGAATTGCCCA+GGG | - | chr8_2:4169706-4169725 | None:intergenic | 50.0% | |
| CCTGGGCAATTCCCAACATT+GGG | + | chr8_2:4169704-4169723 | Msa1228680:CDS | 50.0% | |
| CAATTCCCAACATTGGGTGG+TGG | + | chr8_2:4169710-4169729 | Msa1228680:CDS | 50.0% | |
| CATTTGCCACCACCCAATGT+TGG | - | chr8_2:4169719-4169738 | None:intergenic | 50.0% | |
| TAAAGGGGGGATAGGGGAAA+TGG | - | chr8_2:4169755-4169774 | None:intergenic | 50.0% | |
| TCTTGGGGGTTATATGGTGG+CGG | + | chr8_2:4169973-4169992 | Msa1228680:three_prime_UTR | 50.0% | |
| TCTTCATCCTCCTTGCGGCT+AGG | + | chr8_2:4166144-4166163 | Msa1228680:five_prime_UTR | 55.0% | |
| CTTCATCCTCCTTGCGGCTA+GGG | + | chr8_2:4166145-4166164 | Msa1228680:five_prime_UTR | 55.0% | |
| GAAAAACCCTAGCCGCAAGG+AGG | - | chr8_2:4166154-4166173 | None:intergenic | 55.0% | |
| AGGGAAAAACCCTAGCCGCA+AGG | - | chr8_2:4166157-4166176 | None:intergenic | 55.0% | |
| TGCTGAGCAACAGAAAGCGG+CGG | + | chr8_2:4166395-4166414 | Msa1228680:CDS | 55.0% | |
| CCTTGGTCCAACCCCTTCTT+GGG | - | chr8_2:4166438-4166457 | None:intergenic | 55.0% | |
| AACTGACCAGCCTGAGAAGG+AGG | - | chr8_2:4166513-4166532 | None:intergenic | 55.0% | |
| CCCACGAGAAGGCTCATTTC+TGG | - | chr8_2:4167374-4167393 | None:intergenic | 55.0% | |
| CGAATCCCACTGAGAGACGT+GGG | + | chr8_2:4167521-4167540 | Msa1228680:CDS | 55.0% | |
| CCATACCCACGTCTCTCAGT+GGG | - | chr8_2:4167529-4167548 | None:intergenic | 55.0% | |
| ACCATACCCACGTCTCTCAG+TGG | - | chr8_2:4167530-4167549 | None:intergenic | 55.0% | |
| CCCCGAACTCCTTATCGTGT+TGG | + | chr8_2:4167553-4167572 | Msa1228680:CDS | 55.0% | |
| ! | ACTCCTTATCGTGTTGGCGG+CGG | + | chr8_2:4167559-4167578 | Msa1228680:CDS | 55.0% |
| ! | GGATTCAAACGTGAAGGCGC+TGG | + | chr8_2:4167761-4167780 | Msa1228680:CDS | 55.0% |
| GTGTAGGGTGACTGACGAAG+TGG | + | chr8_2:4167906-4167925 | Msa1228680:intron | 55.0% | |
| GGCAGCAGCTGATGGAAACA+AGG | + | chr8_2:4167984-4168003 | Msa1228680:CDS | 55.0% | |
| CTGTCCTTGTCAGATCCCTG+AGG | - | chr8_2:4168692-4168711 | None:intergenic | 55.0% | |
| CTCAGGGATCTGACAAGGAC+AGG | + | chr8_2:4168690-4168709 | Msa1228680:intron | 55.0% | |
| ! | TAGGAGCACAGACGTCAACG+AGG | - | chr8_2:4169069-4169088 | None:intergenic | 55.0% |
| TACTACAACCCAGGTGGACG+TGG | + | chr8_2:4169581-4169600 | Msa1228680:CDS | 55.0% | |
| CCCAGGGTCCTCAATAGATG+GGG | - | chr8_2:4169690-4169709 | None:intergenic | 55.0% | |
| CCCCATCTATTGAGGACCCT+GGG | + | chr8_2:4169687-4169706 | Msa1228680:CDS | 55.0% | |
| GCCCAGGGTCCTCAATAGAT+GGG | - | chr8_2:4169691-4169710 | None:intergenic | 55.0% | |
| TGCCCAGGGTCCTCAATAGA+TGG | - | chr8_2:4169692-4169711 | None:intergenic | 55.0% | |
| CCCTGGGCAATTCCCAACAT+TGG | + | chr8_2:4169703-4169722 | Msa1228680:CDS | 55.0% | |
| CCCAATGTTGGGAATTGCCC+AGG | - | chr8_2:4169707-4169726 | None:intergenic | 55.0% | |
| GGGCAATTCCCAACATTGGG+TGG | + | chr8_2:4169707-4169726 | Msa1228680:CDS | 55.0% | |
| CCCAAGAAGGGGTTGGACCA+AGG | + | chr8_2:4166435-4166454 | Msa1228680:CDS | 60.0% | |
| GCCTTGGTCCAACCCCTTCT+TGG | - | chr8_2:4166439-4166458 | None:intergenic | 60.0% | |
| CCAGCCTGAGAAGGAGGAAG+TGG | - | chr8_2:4166507-4166526 | None:intergenic | 60.0% | |
| CCACTTCCTCCTTCTCAGGC+TGG | + | chr8_2:4166504-4166523 | Msa1228680:CDS | 60.0% | |
| CAAATCCACGTCCGCCTCCA+CGG | - | chr8_2:4167399-4167418 | None:intergenic | 60.0% | |
| GCGGACGTGGATTTGGACGT+GGG | + | chr8_2:4167404-4167423 | Msa1228680:CDS | 60.0% | |
| CCTTGATTGGCAGGAGGAGC+AGG | - | chr8_2:4167481-4167500 | None:intergenic | 60.0% | |
| CCTGCTCCTCCTGCCAATCA+AGG | + | chr8_2:4167478-4167497 | Msa1228680:CDS | 60.0% | |
| GCGAATCCCACTGAGAGACG+TGG | + | chr8_2:4167520-4167539 | Msa1228680:CDS | 60.0% | |
| CCCACTGAGAGACGTGGGTA+TGG | + | chr8_2:4167526-4167545 | Msa1228680:CDS | 60.0% | |
| GCCACAGTGGAACTGGACGA+GGG | + | chr8_2:4167650-4167669 | Msa1228680:CDS | 60.0% | |
| ACCCTCGTCCAGTTCCACTG+TGG | - | chr8_2:4167654-4167673 | None:intergenic | 60.0% | |
| !! | AAACGTGAAGGCGCTGGACG+AGG | + | chr8_2:4167767-4167786 | Msa1228680:CDS | 60.0% |
| !! | AAGGCGCTGGACGAGGCAAT+TGG | + | chr8_2:4167774-4167793 | Msa1228680:CDS | 60.0% |
| !! | AGGCGCTGGACGAGGCAATT+GGG | + | chr8_2:4167775-4167794 | Msa1228680:CDS | 60.0% |
| GAAGATGCGGCAGCAGCTGA+TGG | + | chr8_2:4167976-4167995 | Msa1228680:CDS | 60.0% | |
| GAGCACAGACGTCAACGAGG+AGG | - | chr8_2:4169066-4169085 | None:intergenic | 60.0% | |
| TACAACCCAGGTGGACGTGG+CGG | + | chr8_2:4169584-4169603 | Msa1228680:CDS | 60.0% | |
| CTCCTCCCCTTGAACCACCA+CGG | - | chr8_2:4169628-4169647 | None:intergenic | 60.0% | |
| AGGGGAGGAGGAGGAGGTTA+TGG | + | chr8_2:4169638-4169657 | Msa1228680:CDS | 60.0% | |
| GGAGGAGGAGGAGGTTATGG+TGG | + | chr8_2:4169641-4169660 | Msa1228680:CDS | 60.0% | |
| GCCCCATCTATTGAGGACCC+TGG | + | chr8_2:4169686-4169705 | Msa1228680:CDS | 60.0% | |
| ACAGAAAGCGGCGGCTGCAG+CGG | + | chr8_2:4166404-4166423 | Msa1228680:CDS | 65.0% | |
| CGTGGAGGCGGACGTGGATT+TGG | + | chr8_2:4167397-4167416 | Msa1228680:CDS | 65.0% | |
| GGCGGACGTGGATTTGGACG+TGG | + | chr8_2:4167403-4167422 | Msa1228680:CDS | 65.0% | |
| CGTGGATTTGGACGTGGGCG+CGG | + | chr8_2:4167409-4167428 | Msa1228680:CDS | 65.0% | |
| TTTGGACGTGGGCGCGGTGA+TGG | + | chr8_2:4167415-4167434 | Msa1228680:CDS | 65.0% | |
| CTGGTGAAGGACGCCCACGA+AGG | + | chr8_2:4167617-4167636 | Msa1228680:CDS | 65.0% | |
| CGCCACAGTGGAACTGGACG+AGG | + | chr8_2:4167649-4167668 | Msa1228680:CDS | 65.0% | |
| ! | GGCGCTGGACGAGGCAATTG+GGG | + | chr8_2:4167776-4167795 | Msa1228680:CDS | 65.0% |
| GTTGCCGAGGACAAGCCTGC+TGG | + | chr8_2:4167949-4167968 | Msa1228680:CDS | 65.0% | |
| CTCGCCAGCAGGCTTGTCCT+CGG | - | chr8_2:4167956-4167975 | None:intergenic | 65.0% | |
| GCCTGCTGGCGAGGAAGATG+CGG | + | chr8_2:4167963-4167982 | Msa1228680:CDS | 65.0% | |
| TGGCGGCCGTGGTGGTTCAA+GGG | + | chr8_2:4169619-4169638 | Msa1228680:CDS | 65.0% | |
| CGTGGTGGTTCAAGGGGAGG+AGG | + | chr8_2:4169626-4169645 | Msa1228680:CDS | 65.0% | |
| GGTGGTTCAAGGGGAGGAGG+AGG | + | chr8_2:4169629-4169648 | Msa1228680:CDS | 65.0% | |
| GGTTCAAGGGGAGGAGGAGG+AGG | + | chr8_2:4169632-4169651 | Msa1228680:CDS | 65.0% | |
| GGGCCGCCGCCAACACGATA+AGG | - | chr8_2:4167565-4167584 | None:intergenic | 70.0% | |
| CGAGGACAAGCCTGCTGGCG+AGG | + | chr8_2:4167954-4167973 | Msa1228680:CDS | 70.0% | |
| GCCGCATCTTCCTCGCCAGC+AGG | - | chr8_2:4167967-4167986 | None:intergenic | 70.0% | |
| GTGGCGGCCGTGGTGGTTCA+AGG | + | chr8_2:4169618-4169637 | Msa1228680:CDS | 70.0% | |
| GGCGGCCGTGGTGGTTCAAG+GGG | + | chr8_2:4169620-4169639 | Msa1228680:CDS | 70.0% | |
| GGCCGTGGTGGTTCAAGGGG+AGG | + | chr8_2:4169623-4169642 | Msa1228680:CDS | 70.0% | |
| GAAAGCGGCGGCTGCAGCGG+CGG | + | chr8_2:4166407-4166426 | Msa1228680:CDS | 75.0% | |
| GGCGGCGCCCAAGAAGGGGT+TGG | + | chr8_2:4166428-4166447 | Msa1228680:CDS | 75.0% | |
| GAGCCTTCTCGTGGGGGCCG+TGG | + | chr8_2:4167379-4167398 | Msa1228680:CDS | 75.0% | |
| CCTCCACGGCCCCCACGAGA+AGG | - | chr8_2:4167385-4167404 | None:intergenic | 75.0% | |
| CCTTCTCGTGGGGGCCGTGG+AGG | + | chr8_2:4167382-4167401 | Msa1228680:CDS | 75.0% | |
| TCTCGTGGGGGCCGTGGAGG+CGG | + | chr8_2:4167385-4167404 | Msa1228680:CDS | 75.0% | |
| ! | GGACGTGGGCGCGGTGATGG+TGG | + | chr8_2:4167418-4167437 | Msa1228680:CDS | 75.0% |
| GGCGGCCCTGATCGTCGTGG+AGG | + | chr8_2:4167577-4167596 | Msa1228680:CDS | 75.0% | |
| CACGGCCGCCACGTCCACCT+GGG | - | chr8_2:4169592-4169611 | None:intergenic | 75.0% | |
| CACGGCCGCCACGTCCACCA+CGG | - | chr8_2:4169610-4169629 | None:intergenic | 75.0% | |
| ! | AGCGGCGGCGGCGCCCAAGA+AGG | + | chr8_2:4166422-4166441 | Msa1228680:CDS | 80.0% |
| ! | GCGGCGGCGGCGCCCAAGAA+GGG | + | chr8_2:4166423-4166442 | Msa1228680:CDS | 80.0% |
| ! | CGGCGGCGGCGCCCAAGAAG+GGG | + | chr8_2:4166424-4166443 | Msa1228680:CDS | 80.0% |
| ! | GGCGGCGGCCCTGATCGTCG+TGG | + | chr8_2:4167574-4167593 | Msa1228680:CDS | 80.0% |
| ! | CCACGGCCGCCACGTCCACC+TGG | - | chr8_2:4169593-4169612 | None:intergenic | 80.0% |
| ! | CCAGGTGGACGTGGCGGCCG+TGG | + | chr8_2:4169590-4169609 | Msa1228680:CDS | 80.0% |
| ! | GGTGGACGTGGCGGCCGTGG+TGG | + | chr8_2:4169593-4169612 | Msa1228680:CDS | 80.0% |
| !!! | CGTGGCGGCCGTGGTGGACG+TGG | + | chr8_2:4169599-4169618 | Msa1228680:CDS | 80.0% |
| !!! | GGCGGCCGTGGTGGACGTGG+CGG | + | chr8_2:4169602-4169621 | Msa1228680:CDS | 80.0% |
| !!! | CGTGGTGGACGTGGCGGCCG+TGG | + | chr8_2:4169608-4169627 | Msa1228680:CDS | 80.0% |
| ! | GGTGGACGTGGCGGCCGTGG+TGG | + | chr8_2:4169593-4169612 | Msa1228680:CDS | 80.0% |
| ! | AGCGGCGGCTGCAGCGGCGG+CGG | + | chr8_2:4166410-4166429 | Msa1228680:CDS | 85.0% |
| ! | GGGGGCCGTGGAGGCGGACG+TGG | + | chr8_2:4167391-4167410 | Msa1228680:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 4166115 | 4170128 | 4166115 | ID=Msa1228680;Name=Msa1228680 |
| chr8_2 | mRNA | 4166115 | 4170128 | 4166115 | ID=Msa1228680-mRNA-1;Parent=Msa1228680;Name=Msa1228680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=215|1|1|1|1|1|7|389|375 |
| chr8_2 | exon | 4166115 | 4166525 | 4166115 | ID=Msa1228680-mRNA-1:exon:1349;Parent=Msa1228680-mRNA-1 |
| chr8_2 | exon | 4167362 | 4167671 | 4167362 | ID=Msa1228680-mRNA-1:exon:1350;Parent=Msa1228680-mRNA-1 |
| chr8_2 | exon | 4167757 | 4167822 | 4167757 | ID=Msa1228680-mRNA-1:exon:1351;Parent=Msa1228680-mRNA-1 |
| chr8_2 | exon | 4167912 | 4168053 | 4167912 | ID=Msa1228680-mRNA-1:exon:1352;Parent=Msa1228680-mRNA-1 |
| chr8_2 | exon | 4168433 | 4168588 | 4168433 | ID=Msa1228680-mRNA-1:exon:1353;Parent=Msa1228680-mRNA-1 |
| chr8_2 | exon | 4168695 | 4168748 | 4168695 | ID=Msa1228680-mRNA-1:exon:1354;Parent=Msa1228680-mRNA-1 |
| chr8_2 | exon | 4169536 | 4170128 | 4169536 | ID=Msa1228680-mRNA-1:exon:1355;Parent=Msa1228680-mRNA-1 |
| chr8_2 | five_prime_UTR | 4166115 | 4166329 | 4166115 | ID=Msa1228680-mRNA-1:five_prime_utr;Parent=Msa1228680-mRNA-1 |
| chr8_2 | CDS | 4166330 | 4166525 | 4166330 | ID=Msa1228680-mRNA-1:cds;Parent=Msa1228680-mRNA-1 |
| chr8_2 | CDS | 4167362 | 4167671 | 4167362 | ID=Msa1228680-mRNA-1:cds;Parent=Msa1228680-mRNA-1 |
| chr8_2 | CDS | 4167757 | 4167822 | 4167757 | ID=Msa1228680-mRNA-1:cds;Parent=Msa1228680-mRNA-1 |
| chr8_2 | CDS | 4167912 | 4168053 | 4167912 | ID=Msa1228680-mRNA-1:cds;Parent=Msa1228680-mRNA-1 |
| chr8_2 | CDS | 4168433 | 4168588 | 4168433 | ID=Msa1228680-mRNA-1:cds;Parent=Msa1228680-mRNA-1 |
| chr8_2 | CDS | 4168695 | 4168748 | 4168695 | ID=Msa1228680-mRNA-1:cds;Parent=Msa1228680-mRNA-1 |
| chr8_2 | CDS | 4169536 | 4169739 | 4169536 | ID=Msa1228680-mRNA-1:cds;Parent=Msa1228680-mRNA-1 |
| chr8_2 | three_prime_UTR | 4169740 | 4170128 | 4169740 | ID=Msa1228680-mRNA-1:three_prime_utr;Parent=Msa1228680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
