AlfalfaGEDB | Msa0337670

M. sativa cultivar zhongmu-4 / Msa0337670

KEGG: K02866
GO: -
PFAM: PF00252.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337670	XP_013465191.1	100.000	223	0	0	1	223	1	223	4.83e-164	461

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337670	sp\|Q9M5M7\|RL10_EUPES	95.413	218	10	0	1	218	1	218	9.22e-156	433

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0337670	0.846850	1.676095e-59	-8.615850e-47
Msa0002790	Msa0337670	0.839128	1.906573e-57	-8.615850e-47
Msa0045730	Msa0337670	0.865062	7.754256e-65	-8.615850e-47
Msa0052790	Msa0337670	0.814587	1.428353e-51	-8.615850e-47
Msa0086750	Msa0337670	0.809051	2.290225e-50	-8.615850e-47
Msa0116130	Msa0337670	0.852825	3.580177e-61	-8.615850e-47
Msa0116670	Msa0337670	0.800430	1.446468e-48	-8.615850e-47
Msa0123010	Msa0337670	0.800657	1.300467e-48	-8.615850e-47
Msa0133540	Msa0337670	0.815638	8.343023e-52	-8.615850e-47
Msa0146340	Msa0337670	0.824395	8.260945e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337670	MtrunA17_Chr2g0325151	100.000	223	0	1	223	1	223	4.44e-168	461
Msa0337670	MtrunA17_Chr3g0128921	98.649	222	3	1	222	1	222	1.02e-165	456
Msa0337670	MtrunA17_Chr3g0108371	93.119	218	15	1	218	1	218	2.85e-152	421

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337670	AT1G26910.1	88.991	218	24	0	1	218	1	218	1.35e-146	407
Msa0337670	AT1G14320.1	88.532	218	25	0	1	218	1	218	2.16e-145	404
Msa0337670	AT1G66580.1	88.128	219	26	0	1	219	1	219	7.56e-145	403
Msa0337670	AT1G26910.2	87.845	181	22	0	38	218	1	181	9.68e-118	333
Msa0337670	AT1G14320.2	76.596	94	20	1	127	218	31	124	1.19e-45	148
Msa0337670	AT1G14320.2	97.436	39	1	0	38	76	1	39	1.96e-20	83.6

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Find 88 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAATTATGCCCGAT+GGG	0.552482	2_4:+57762793	Msa0337670:CDS
AAAATCTATATATATATTTA+GGG	0.301012	2_4:-57760272	None:intergenic
AAACAGAATTATGCCCGATG+GGG	0.689778	2_4:+57762794	Msa0337670:CDS
AAACCACTTTCAAGAAATTA+TGG	0.236047	2_4:+57760199	Msa0337670:five_prime_UTR
AAATTATGGATATAGATTTA+TGG	0.263435	2_4:+57760213	Msa0337670:five_prime_UTR
AACAAGATGCTTTCATGTGC+TGG	0.512686	2_4:+57762406	Msa0337670:CDS
AAGATCAGGATTTACGATGT+TGG	0.557539	2_4:+57762196	Msa0337670:CDS
AAGGAACGCAGCGCAGCCAT+GGG	0.507562	2_4:+57760344	Msa0337670:exon
AAGTACATGTCAAAGTTTGC+AGG	0.473692	2_4:+57762328	Msa0337670:CDS
ACATCGTAAATCCTGATCTT+AGG	0.319740	2_4:-57762193	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATCAAATCAATCTTGCA+AGG	+	chr2_4:57760305-57760324	Msa0337670:five_prime_UTR	30.0%
ATGAAAATTAGAAGGGGATT+AGG	-	chr2_4:57760381-57760400	None:intergenic	30.0%
TAGTAAGATCAAATTGAGCA+TGG	-	chr2_4:57761100-57761119	None:intergenic	30.0%
TCCCAACACATAATACATAA+TGG	+	chr2_4:57761124-57761143	Msa0337670:intron	30.0%
CTCCATTATGTATTATGTGT+TGG	-	chr2_4:57761129-57761148	None:intergenic	30.0%
AACAGGGAATTAGTAACAAT+AGG	-	chr2_4:57761499-57761518	None:intergenic	30.0%
TTAGTACTTGGGTATATCTA+TGG	-	chr2_4:57761761-57761780	None:intergenic	30.0%
ACGGTATAATCAGAATAGTA+AGG	-	chr2_4:57761869-57761888	None:intergenic	30.0%
TCAGAAATATCACCATCTTT+CGG	+	chr2_4:57761895-57761914	Msa0337670:intron	30.0%
ACAAATCTACAATCGAAGTA+AGG	-	chr2_4:57762650-57762669	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	57760176	57763552	57760176	ID=Msa0337670;Name=Msa0337670
chr2_4	mRNA	57760176	57763552	57760176	ID=Msa0337670-mRNA-1;Parent=Msa0337670;Name=Msa0337670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=186\|1\|1\|1\|1\|1\|4\|415\|223
chr2_4	exon	57760176	57760371	57760176	ID=Msa0337670-mRNA-1:exon:17603;Parent=Msa0337670-mRNA-1
chr2_4	exon	57762119	57762620	57762119	ID=Msa0337670-mRNA-1:exon:17604;Parent=Msa0337670-mRNA-1
chr2_4	exon	57762746	57762827	57762746	ID=Msa0337670-mRNA-1:exon:17605;Parent=Msa0337670-mRNA-1
chr2_4	exon	57763060	57763552	57763060	ID=Msa0337670-mRNA-1:exon:17606;Parent=Msa0337670-mRNA-1
chr2_4	five_prime_UTR	57760176	57760361	57760176	ID=Msa0337670-mRNA-1:five_prime_utr;Parent=Msa0337670-mRNA-1
chr2_4	CDS	57760362	57760371	57760362	ID=Msa0337670-mRNA-1:cds;Parent=Msa0337670-mRNA-1
chr2_4	CDS	57762119	57762620	57762119	ID=Msa0337670-mRNA-1:cds;Parent=Msa0337670-mRNA-1
chr2_4	CDS	57762746	57762827	57762746	ID=Msa0337670-mRNA-1:cds;Parent=Msa0337670-mRNA-1
chr2_4	CDS	57763060	57763137	57763060	ID=Msa0337670-mRNA-1:cds;Parent=Msa0337670-mRNA-1
chr2_4	three_prime_UTR	57763138	57763552	57763138	ID=Msa0337670-mRNA-1:three_prime_utr;Parent=Msa0337670-mRNA-1

Gene Sequence

>Msa0337670

ATGGGAAGAAGGCCTGCTAGGTGTTACCGTCAAATTAAGAACAAGCCATATCCAAAATCACGATTCTGTCGTGGAGTTCCTGATCCTAAGATCAGGATTTACGATGTTGGCATGAAGAAGAAGGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTGGTCAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTTGAAGCTGCTAGGATTGCCTGCAACAAGTACATGTCAAAGTTTGCAGGAAAGGATGCATTCCACTTGAGAGTCAGGGTTCATCCATTCCATGTACTCAGGATCAACAAGATGCTTTCATGTGCTGGTGCTGATAGGCTTCAAACTGGTATGAGAGGTGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTAGAGTGGCTATTGGGCAGGTGCTCCTTTCTGTCCGTTGCAAGGACAACAACAGCCACCATGCTCAGGAGGCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATCGTTAGCAGGAAGTGGGGATTCACAAAGATCAACCGAGCTGAGTATCTGAAGTTGAAATCGGAAAACAGAATTATGCCCGATGGGGTGAATGCTAAGCTTCTTGGATGCCATGGACCATTGGCTAACCGTCAACCTGGAAGAGCTTTTTTGAATGCCAGCTGTAATGAGGCTTAG

Protein sequence

>Msa0337670

MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKINRAEYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLNASCNEA*