Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229070 | XP_013443896.1 | 99.000 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 1.50e-145 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229070 | sp|O80513|CCU41_ARATH | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 3.94e-95 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1229070 | Msa1271810 | 0.819628 | 1.050845e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229070 | MtrunA17_Chr8g0335971 | 99.000 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 1.38e-149 | 413 |
| Msa1229070 | MtrunA17_Chr7g0250121 | 80.788 | 203 | 36 | 2 | 1 | 200 | 1 | 203 | 3.61e-116 | 328 |
| Msa1229070 | MtrunA17_Chr7g0259831 | 50.633 | 158 | 73 | 3 | 9 | 162 | 30 | 186 | 5.08e-50 | 161 |
| Msa1229070 | MtrunA17_Chr7g0231431 | 43.646 | 181 | 93 | 3 | 10 | 182 | 29 | 208 | 2.46e-47 | 154 |
| Msa1229070 | MtrunA17_Chr2g0322921 | 42.211 | 199 | 98 | 2 | 9 | 191 | 25 | 222 | 1.14e-43 | 145 |
| Msa1229070 | MtrunA17_Chr4g0012811 | 45.122 | 164 | 82 | 1 | 5 | 160 | 24 | 187 | 5.53e-37 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229070 | AT2G44740.1 | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 4.00e-96 | 278 |
| Msa1229070 | AT5G61650.1 | 56.796 | 206 | 81 | 3 | 3 | 200 | 13 | 218 | 1.36e-80 | 239 |
| Msa1229070 | AT5G07450.1 | 57.143 | 203 | 73 | 4 | 1 | 196 | 16 | 211 | 5.25e-77 | 230 |
| Msa1229070 | AT2G45080.1 | 40.000 | 195 | 112 | 2 | 5 | 195 | 23 | 216 | 1.58e-46 | 153 |
| Msa1229070 | AT3G60550.1 | 40.909 | 198 | 108 | 2 | 10 | 199 | 30 | 226 | 2.96e-46 | 152 |
| Msa1229070 | AT3G05327.1 | 45.963 | 161 | 78 | 3 | 10 | 161 | 31 | 191 | 2.21e-45 | 149 |
| Msa1229070 | AT3G21870.1 | 45.513 | 156 | 80 | 2 | 10 | 160 | 25 | 180 | 1.81e-43 | 144 |
| Msa1229070 | AT3G63120.2 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.36e-41 | 140 |
| Msa1229070 | AT3G63120.1 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.36e-41 | 140 |
Find 27 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGTTGGATTTCTTGTT+TGG | 0.226808 | 8_2:+4682294 | Msa1229070:CDS |
| AAGAAAATTCATCTCCGTTT+TGG | 0.264352 | 8_2:-4682274 | None:intergenic |
| GTTATCAACTTTGGCATCAT+TGG | 0.279346 | 8_2:-4680903 | None:intergenic |
| TTGGATTTCTTGTTTGGTTT+AGG | 0.294726 | 8_2:+4682300 | Msa1229070:CDS |
| TAGCTTTGAATTGAGATGTT+TGG | 0.365755 | 8_2:-4681017 | None:intergenic |
| TTCTCTCTTCACTTCTTGAA+AGG | 0.369852 | 8_2:+4680928 | Msa1229070:CDS |
| GCATTTGTAGCATTTCTCTT+TGG | 0.372837 | 8_2:-4682374 | None:intergenic |
| GAGAGAAAAGTTATCAACTT+TGG | 0.396655 | 8_2:-4680912 | None:intergenic |
| TCTCTCTTCACTTCTTGAAA+GGG | 0.397849 | 8_2:+4680929 | Msa1229070:CDS |
| ATCAAACAGCTAGTTGTTGT+TGG | 0.399140 | 8_2:-4682488 | None:intergenic |
| TATGGTTGCTGCTAAATTCA+TGG | 0.400894 | 8_2:+4681181 | Msa1229070:CDS |
| AATGCTTATTATGCAAAAGT+TGG | 0.413031 | 8_2:+4682243 | Msa1229070:CDS |
| TCTCAATGCATGTAGTAGAT+TGG | 0.414987 | 8_2:+4682521 | Msa1229070:three_prime_UTR |
| CTTGTTGATCACTAGTGTTA+TGG | 0.440335 | 8_2:+4681163 | Msa1229070:CDS |
| AAGGAGTTGATAGGCAAAGA+AGG | 0.486036 | 8_2:-4681128 | None:intergenic |
| GTAGTGAATCTGTTACTCAT+TGG | 0.495522 | 8_2:+4682563 | Msa1229070:three_prime_UTR |
| TGAACATTGAAGGAGTTGAT+AGG | 0.499691 | 8_2:-4681137 | None:intergenic |
| GAGTTTGAGTGAAACGATCA+AGG | 0.511395 | 8_2:-4681103 | None:intergenic |
| CAACAAGCGATGAACATTGA+AGG | 0.515637 | 8_2:-4681147 | None:intergenic |
| CAAAACTTTGTCACTATCCA+TGG | 0.518427 | 8_2:+4680866 | Msa1229070:exon |
| GCTTATTATGCAAAAGTTGG+AGG | 0.519013 | 8_2:+4682246 | Msa1229070:CDS |
| GAGTAAGAAAGGAATCCATA+AGG | 0.542511 | 8_2:-4682604 | None:intergenic |
| AAGTTTAGCAAAATCACTAA+AGG | 0.550070 | 8_2:+4682425 | Msa1229070:CDS |
| TGGACTCTCTAACTCGGCCA+TGG | 0.557349 | 8_2:-4680883 | None:intergenic |
| CATCATTGGACTCTCTAACT+CGG | 0.585771 | 8_2:-4680889 | None:intergenic |
| AGTTGGAGGAATCACCAAAA+CGG | 0.594734 | 8_2:+4682260 | Msa1229070:CDS |
| CAATAAGCTTGAAATGTGAC+TGG | 0.606542 | 8_2:-4682342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAAAAAAAAAACAG+AGG | - | chr8_2:4681411-4681430 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | + | chr8_2:4681662-4681681 | Msa1229070:intron | 10.0% |
| !! | TATAAAAAAAAAAAAAACAG+AGG | - | chr8_2:4681411-4681430 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | + | chr8_2:4681662-4681681 | Msa1229070:intron | 10.0% |
| !! | ATCAAATAAAAACAGAATTA+TGG | + | chr8_2:4681368-4681387 | Msa1229070:intron | 15.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | - | chr8_2:4681448-4681467 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | - | chr8_2:4681634-4681653 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | - | chr8_2:4681747-4681766 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | - | chr8_2:4682094-4682113 | None:intergenic | 15.0% |
| !! | ATCAAATAAAAACAGAATTA+TGG | + | chr8_2:4681368-4681387 | Msa1229070:intron | 15.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | - | chr8_2:4681448-4681467 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | - | chr8_2:4681634-4681653 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | - | chr8_2:4681747-4681766 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | - | chr8_2:4682094-4682113 | None:intergenic | 15.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | + | chr8_2:4681320-4681339 | Msa1229070:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | - | chr8_2:4681515-4681534 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | - | chr8_2:4681817-4681836 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | + | chr8_2:4682589-4682608 | Msa1229070:three_prime_UTR | 20.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | + | chr8_2:4681320-4681339 | Msa1229070:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | - | chr8_2:4681515-4681534 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | - | chr8_2:4681817-4681836 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | + | chr8_2:4682589-4682608 | Msa1229070:three_prime_UTR | 20.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | - | chr8_2:4680983-4681002 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | + | chr8_2:4680984-4681003 | Msa1229070:CDS | 25.0% |
| !!! | CCAAATTTTAGCATATTTGA+GGG | - | chr8_2:4681601-4681620 | None:intergenic | 25.0% |
| !!! | TCCAAATTTTAGCATATTTG+AGG | - | chr8_2:4681602-4681621 | None:intergenic | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | + | chr8_2:4681673-4681692 | Msa1229070:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | - | chr8_2:4681775-4681794 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | + | chr8_2:4681786-4681805 | Msa1229070:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | + | chr8_2:4681897-4681916 | Msa1229070:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | - | chr8_2:4681912-4681931 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | - | chr8_2:4681993-4682012 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | - | chr8_2:4682209-4682228 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | + | chr8_2:4682243-4682262 | Msa1229070:CDS | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | - | chr8_2:4682402-4682421 | None:intergenic | 25.0% |
| ! | AAGTTTAGCAAAATCACTAA+AGG | + | chr8_2:4682425-4682444 | Msa1229070:CDS | 25.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | - | chr8_2:4680983-4681002 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | + | chr8_2:4680984-4681003 | Msa1229070:CDS | 25.0% |
| !!! | CCAAATTTTAGCATATTTGA+GGG | - | chr8_2:4681601-4681620 | None:intergenic | 25.0% |
| !!! | TCCAAATTTTAGCATATTTG+AGG | - | chr8_2:4681602-4681621 | None:intergenic | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | + | chr8_2:4681673-4681692 | Msa1229070:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | - | chr8_2:4681775-4681794 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | + | chr8_2:4681786-4681805 | Msa1229070:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | + | chr8_2:4681897-4681916 | Msa1229070:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | - | chr8_2:4681912-4681931 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | - | chr8_2:4681993-4682012 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | - | chr8_2:4682209-4682228 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | + | chr8_2:4682243-4682262 | Msa1229070:CDS | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | - | chr8_2:4682402-4682421 | None:intergenic | 25.0% |
| ! | AAGTTTAGCAAAATCACTAA+AGG | + | chr8_2:4682425-4682444 | Msa1229070:CDS | 25.0% |
| GAGAGAAAAGTTATCAACTT+TGG | - | chr8_2:4680915-4680934 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | - | chr8_2:4681020-4681039 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | + | chr8_2:4681235-4681254 | Msa1229070:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | + | chr8_2:4681256-4681275 | Msa1229070:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | + | chr8_2:4681337-4681356 | Msa1229070:intron | 30.0% | |
| CCCTCAAATATGCTAAAATT+TGG | + | chr8_2:4681598-4681617 | Msa1229070:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | - | chr8_2:4681772-4681791 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | + | chr8_2:4681791-4681810 | Msa1229070:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | - | chr8_2:4681874-4681893 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | + | chr8_2:4681996-4682015 | Msa1229070:intron | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | - | chr8_2:4682194-4682213 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | + | chr8_2:4682211-4682230 | Msa1229070:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | - | chr8_2:4682277-4682296 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | + | chr8_2:4682300-4682319 | Msa1229070:CDS | 30.0% |
| ! | AAGTTTTGCTTCAACAAGTT+TGG | - | chr8_2:4680854-4680873 | None:intergenic | 30.0% |
| GAGAGAAAAGTTATCAACTT+TGG | - | chr8_2:4680915-4680934 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | - | chr8_2:4681020-4681039 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | + | chr8_2:4681235-4681254 | Msa1229070:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | + | chr8_2:4681256-4681275 | Msa1229070:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | + | chr8_2:4681337-4681356 | Msa1229070:intron | 30.0% | |
| CCCTCAAATATGCTAAAATT+TGG | + | chr8_2:4681598-4681617 | Msa1229070:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | - | chr8_2:4681772-4681791 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | + | chr8_2:4681791-4681810 | Msa1229070:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | - | chr8_2:4681874-4681893 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | + | chr8_2:4681996-4682015 | Msa1229070:intron | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | - | chr8_2:4682194-4682213 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | + | chr8_2:4682211-4682230 | Msa1229070:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | - | chr8_2:4682277-4682296 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | + | chr8_2:4682300-4682319 | Msa1229070:CDS | 30.0% |
| CAAAACTTTGTCACTATCCA+TGG | + | chr8_2:4680866-4680885 | Msa1229070:exon | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | - | chr8_2:4680906-4680925 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | + | chr8_2:4680928-4680947 | Msa1229070:CDS | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | + | chr8_2:4680929-4680948 | Msa1229070:CDS | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | chr8_2:4681140-4681159 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | + | chr8_2:4681163-4681182 | Msa1229070:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | + | chr8_2:4681181-4681200 | Msa1229070:CDS | 35.0% | |
| CGGATTGATTGTATGTTTGT+TGG | - | chr8_2:4682030-4682049 | None:intergenic | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | + | chr8_2:4682246-4682265 | Msa1229070:CDS | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | + | chr8_2:4682281-4682300 | Msa1229070:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | + | chr8_2:4682294-4682313 | Msa1229070:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | - | chr8_2:4682345-4682364 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | - | chr8_2:4682377-4682396 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | - | chr8_2:4682491-4682510 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | + | chr8_2:4682521-4682540 | Msa1229070:three_prime_UTR | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | + | chr8_2:4682563-4682582 | Msa1229070:three_prime_UTR | 35.0% | |
| CAAAACTTTGTCACTATCCA+TGG | + | chr8_2:4680866-4680885 | Msa1229070:exon | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | - | chr8_2:4680906-4680925 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | + | chr8_2:4680928-4680947 | Msa1229070:CDS | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | + | chr8_2:4680929-4680948 | Msa1229070:CDS | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | chr8_2:4681140-4681159 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | + | chr8_2:4681163-4681182 | Msa1229070:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | + | chr8_2:4681181-4681200 | Msa1229070:CDS | 35.0% | |
| CGGATTGATTGTATGTTTGT+TGG | - | chr8_2:4682030-4682049 | None:intergenic | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | + | chr8_2:4682246-4682265 | Msa1229070:CDS | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | + | chr8_2:4682281-4682300 | Msa1229070:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | + | chr8_2:4682294-4682313 | Msa1229070:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | - | chr8_2:4682345-4682364 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | - | chr8_2:4682377-4682396 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | - | chr8_2:4682491-4682510 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | + | chr8_2:4682521-4682540 | Msa1229070:three_prime_UTR | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | + | chr8_2:4682563-4682582 | Msa1229070:three_prime_UTR | 35.0% | |
| CATCATTGGACTCTCTAACT+CGG | - | chr8_2:4680892-4680911 | None:intergenic | 40.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | - | chr8_2:4681106-4681125 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | - | chr8_2:4681131-4681150 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | - | chr8_2:4681150-4681169 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | + | chr8_2:4681690-4681709 | Msa1229070:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | - | chr8_2:4681699-4681718 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | chr8_2:4682000-4682019 | Msa1229070:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | - | chr8_2:4682053-4682072 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | - | chr8_2:4682054-4682073 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | - | chr8_2:4682230-4682249 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | + | chr8_2:4682260-4682279 | Msa1229070:CDS | 40.0% | |
| CATCATTGGACTCTCTAACT+CGG | - | chr8_2:4680892-4680911 | None:intergenic | 40.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | - | chr8_2:4681106-4681125 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | - | chr8_2:4681131-4681150 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | - | chr8_2:4681150-4681169 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | + | chr8_2:4681690-4681709 | Msa1229070:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | - | chr8_2:4681699-4681718 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | chr8_2:4682000-4682019 | Msa1229070:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | - | chr8_2:4682053-4682072 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | - | chr8_2:4682054-4682073 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | - | chr8_2:4682230-4682249 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | + | chr8_2:4682260-4682279 | Msa1229070:CDS | 40.0% | |
| GGCCGAACCTTGAATTATCA+AGG | - | chr8_2:4681796-4681815 | None:intergenic | 45.0% | |
| GGCCGAACCTTGAATTATCA+AGG | - | chr8_2:4681796-4681815 | None:intergenic | 45.0% | |
| !! | ATTATATTTATAATAACAAT+TGG | - | chr8_2:4682097-4682116 | None:intergenic | 5.0% |
| !! | ATTATATTTATAATAACAAT+TGG | - | chr8_2:4682097-4682116 | None:intergenic | 5.0% |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | - | chr8_2:4682017-4682036 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+CGG | - | chr8_2:4682050-4682069 | None:intergenic | 50.0% | |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | - | chr8_2:4682017-4682036 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+CGG | - | chr8_2:4682050-4682069 | None:intergenic | 50.0% | |
| TGGACTCTCTAACTCGGCCA+TGG | - | chr8_2:4680886-4680905 | None:intergenic | 55.0% | |
| TGGACTCTCTAACTCGGCCA+TGG | - | chr8_2:4680886-4680905 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 4680853 | 4682616 | 4680853 | ID=Msa1229070;Name=Msa1229070 |
| chr8_2 | mRNA | 4680853 | 4682616 | 4680853 | ID=Msa1229070-mRNA-1;Parent=Msa1229070;Name=Msa1229070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=32|1|1|1|1|1|2|107|200 |
| chr8_2 | exon | 4680853 | 4681210 | 4680853 | ID=Msa1229070-mRNA-1:exon:1506;Parent=Msa1229070-mRNA-1 |
| chr8_2 | exon | 4682233 | 4682616 | 4682233 | ID=Msa1229070-mRNA-1:exon:1507;Parent=Msa1229070-mRNA-1 |
| chr8_2 | five_prime_UTR | 4680853 | 4680884 | 4680853 | ID=Msa1229070-mRNA-1:five_prime_utr;Parent=Msa1229070-mRNA-1 |
| chr8_2 | CDS | 4680885 | 4681210 | 4680885 | ID=Msa1229070-mRNA-1:cds;Parent=Msa1229070-mRNA-1 |
| chr8_2 | CDS | 4682233 | 4682509 | 4682233 | ID=Msa1229070-mRNA-1:cds;Parent=Msa1229070-mRNA-1 |
| chr8_2 | three_prime_UTR | 4682510 | 4682616 | 4682510 | ID=Msa1229070-mRNA-1:three_prime_utr;Parent=Msa1229070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
