Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271810 | XP_013443896.1 | 99.000 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 1.50e-145 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271810 | sp|O80513|CCU41_ARATH | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 3.94e-95 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271810 | B7FHT5 | 99.000 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 7.19e-146 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184500 | Msa1271810 | 0.804964 | 1.677632e-49 | -8.615850e-47 |
| Msa1229070 | Msa1271810 | 0.819628 | 1.050845e-52 | -8.615850e-47 |
| Msa1229130 | Msa1271810 | 0.885658 | 6.724113e-72 | -8.615850e-47 |
| Msa1271810 | Msa1404400 | 0.885375 | 8.581771e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271810 | MtrunA17_Chr8g0335971 | 99.000 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 1.38e-149 | 413 |
| Msa1271810 | MtrunA17_Chr7g0250121 | 80.788 | 203 | 36 | 2 | 1 | 200 | 1 | 203 | 3.61e-116 | 328 |
| Msa1271810 | MtrunA17_Chr7g0259831 | 50.633 | 158 | 73 | 3 | 9 | 162 | 30 | 186 | 5.08e-50 | 161 |
| Msa1271810 | MtrunA17_Chr7g0231431 | 43.646 | 181 | 93 | 3 | 10 | 182 | 29 | 208 | 2.46e-47 | 154 |
| Msa1271810 | MtrunA17_Chr2g0322921 | 42.211 | 199 | 98 | 2 | 9 | 191 | 25 | 222 | 1.14e-43 | 145 |
| Msa1271810 | MtrunA17_Chr4g0012811 | 45.122 | 164 | 82 | 1 | 5 | 160 | 24 | 187 | 5.53e-37 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271810 | AT2G44740.1 | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 4.00e-96 | 278 |
| Msa1271810 | AT5G61650.1 | 56.796 | 206 | 81 | 3 | 3 | 200 | 13 | 218 | 1.36e-80 | 239 |
| Msa1271810 | AT5G07450.1 | 57.143 | 203 | 73 | 4 | 1 | 196 | 16 | 211 | 5.25e-77 | 230 |
| Msa1271810 | AT2G45080.1 | 40.000 | 195 | 112 | 2 | 5 | 195 | 23 | 216 | 1.58e-46 | 153 |
| Msa1271810 | AT3G60550.1 | 40.909 | 198 | 108 | 2 | 10 | 199 | 30 | 226 | 2.96e-46 | 152 |
| Msa1271810 | AT3G05327.1 | 45.963 | 161 | 78 | 3 | 10 | 161 | 31 | 191 | 2.21e-45 | 149 |
| Msa1271810 | AT3G21870.1 | 45.513 | 156 | 80 | 2 | 10 | 160 | 25 | 180 | 1.81e-43 | 144 |
| Msa1271810 | AT3G63120.2 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.36e-41 | 140 |
| Msa1271810 | AT3G63120.1 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.36e-41 | 140 |
Find 27 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGTTGGATTTCTTGTT+TGG | 0.226808 | 8_3:+5266616 | Msa1271810:CDS |
| AAGAAAATTCATCTCCGTTT+TGG | 0.264352 | 8_3:-5266596 | None:intergenic |
| GTTATCAACTTTGGCATCAT+TGG | 0.279346 | 8_3:-5265224 | None:intergenic |
| TTGGATTTCTTGTTTGGTTT+AGG | 0.294726 | 8_3:+5266622 | Msa1271810:CDS |
| TAGCTTTGAATTGAGATGTT+TGG | 0.365755 | 8_3:-5265338 | None:intergenic |
| TTCTCTCTTCACTTCTTGAA+AGG | 0.369852 | 8_3:+5265249 | Msa1271810:CDS |
| GCATTTGTAGCATTTCTCTT+TGG | 0.372837 | 8_3:-5266696 | None:intergenic |
| GAGAGAAAAGTTATCAACTT+TGG | 0.396655 | 8_3:-5265233 | None:intergenic |
| TCTCTCTTCACTTCTTGAAA+GGG | 0.397849 | 8_3:+5265250 | Msa1271810:CDS |
| ATCAAACAGCTAGTTGTTGT+TGG | 0.399140 | 8_3:-5266810 | None:intergenic |
| TATGGTTGCTGCTAAATTCA+TGG | 0.400894 | 8_3:+5265502 | Msa1271810:CDS |
| AATGCTTATTATGCAAAAGT+TGG | 0.413031 | 8_3:+5266565 | Msa1271810:CDS |
| TCTCAATGCATGTAGTAGAT+TGG | 0.414987 | 8_3:+5266843 | Msa1271810:three_prime_UTR |
| CTTGTTGATCACTAGTGTTA+TGG | 0.440335 | 8_3:+5265484 | Msa1271810:CDS |
| AAGGAGTTGATAGGCAAAGA+AGG | 0.486036 | 8_3:-5265449 | None:intergenic |
| GTAGTGAATCTGTTACTCAT+TGG | 0.495522 | 8_3:+5266885 | Msa1271810:three_prime_UTR |
| TGAACATTGAAGGAGTTGAT+AGG | 0.499691 | 8_3:-5265458 | None:intergenic |
| GAGTTTGAGTGAAACGATCA+AGG | 0.511395 | 8_3:-5265424 | None:intergenic |
| CAACAAGCGATGAACATTGA+AGG | 0.515637 | 8_3:-5265468 | None:intergenic |
| CAAAACTTTGTCACTATCCA+TGG | 0.518427 | 8_3:+5265187 | Msa1271810:exon |
| GCTTATTATGCAAAAGTTGG+AGG | 0.519013 | 8_3:+5266568 | Msa1271810:CDS |
| GAGTAAGAAAGGAATCCATA+AGG | 0.542511 | 8_3:-5266926 | None:intergenic |
| AAGTTTAGCAAAATCACTAA+AGG | 0.550070 | 8_3:+5266747 | Msa1271810:CDS |
| TGGACTCTCTAACTCGGCCA+TGG | 0.557349 | 8_3:-5265204 | None:intergenic |
| CATCATTGGACTCTCTAACT+CGG | 0.585771 | 8_3:-5265210 | None:intergenic |
| AGTTGGAGGAATCACCAAAA+CGG | 0.594734 | 8_3:+5266582 | Msa1271810:CDS |
| CAATAAGCTTGAAATGTGAC+TGG | 0.606542 | 8_3:-5266664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAAAAAAAACAG+AGG | - | chr8_3:5265732-5265751 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | + | chr8_3:5265984-5266003 | Msa1271810:intron | 10.0% |
| !! | ATAAAAAAAAAAAAAAACAG+AGG | - | chr8_3:5265732-5265751 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | + | chr8_3:5265984-5266003 | Msa1271810:intron | 10.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | - | chr8_3:5265770-5265789 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | - | chr8_3:5265956-5265975 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | - | chr8_3:5266069-5266088 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | - | chr8_3:5266416-5266435 | None:intergenic | 15.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | - | chr8_3:5265770-5265789 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | - | chr8_3:5265956-5265975 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | - | chr8_3:5266069-5266088 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | - | chr8_3:5266416-5266435 | None:intergenic | 15.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | + | chr8_3:5265641-5265660 | Msa1271810:intron | 20.0% |
| !! | ATCAAACAAAAACAGAATTA+TGG | + | chr8_3:5265689-5265708 | Msa1271810:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | - | chr8_3:5265837-5265856 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | - | chr8_3:5266139-5266158 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | + | chr8_3:5266911-5266930 | Msa1271810:three_prime_UTR | 20.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | + | chr8_3:5265641-5265660 | Msa1271810:intron | 20.0% |
| !! | ATCAAACAAAAACAGAATTA+TGG | + | chr8_3:5265689-5265708 | Msa1271810:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | - | chr8_3:5265837-5265856 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | - | chr8_3:5266139-5266158 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | + | chr8_3:5266911-5266930 | Msa1271810:three_prime_UTR | 20.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | - | chr8_3:5265304-5265323 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | + | chr8_3:5265305-5265324 | Msa1271810:CDS | 25.0% |
| ! | CACTCAAATATGCTAAAATT+TGG | + | chr8_3:5265920-5265939 | Msa1271810:intron | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | + | chr8_3:5265995-5266014 | Msa1271810:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | - | chr8_3:5266097-5266116 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | + | chr8_3:5266108-5266127 | Msa1271810:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | + | chr8_3:5266219-5266238 | Msa1271810:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | - | chr8_3:5266234-5266253 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | - | chr8_3:5266315-5266334 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | - | chr8_3:5266531-5266550 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | + | chr8_3:5266565-5266584 | Msa1271810:CDS | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | - | chr8_3:5266724-5266743 | None:intergenic | 25.0% |
| ! | AAGTTTAGCAAAATCACTAA+AGG | + | chr8_3:5266747-5266766 | Msa1271810:CDS | 25.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | - | chr8_3:5265304-5265323 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | + | chr8_3:5265305-5265324 | Msa1271810:CDS | 25.0% |
| ! | CACTCAAATATGCTAAAATT+TGG | + | chr8_3:5265920-5265939 | Msa1271810:intron | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | + | chr8_3:5265995-5266014 | Msa1271810:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | - | chr8_3:5266097-5266116 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | + | chr8_3:5266108-5266127 | Msa1271810:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | + | chr8_3:5266219-5266238 | Msa1271810:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | - | chr8_3:5266234-5266253 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | - | chr8_3:5266315-5266334 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | - | chr8_3:5266531-5266550 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | + | chr8_3:5266565-5266584 | Msa1271810:CDS | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | - | chr8_3:5266724-5266743 | None:intergenic | 25.0% |
| ! | AAGTTTAGCAAAATCACTAA+AGG | + | chr8_3:5266747-5266766 | Msa1271810:CDS | 25.0% |
| GAGAGAAAAGTTATCAACTT+TGG | - | chr8_3:5265236-5265255 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | - | chr8_3:5265341-5265360 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | + | chr8_3:5265556-5265575 | Msa1271810:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | + | chr8_3:5265577-5265596 | Msa1271810:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | + | chr8_3:5265658-5265677 | Msa1271810:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | - | chr8_3:5266094-5266113 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | + | chr8_3:5266113-5266132 | Msa1271810:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | - | chr8_3:5266196-5266215 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | + | chr8_3:5266318-5266337 | Msa1271810:intron | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | - | chr8_3:5266516-5266535 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | + | chr8_3:5266533-5266552 | Msa1271810:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | - | chr8_3:5266599-5266618 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | + | chr8_3:5266622-5266641 | Msa1271810:CDS | 30.0% |
| ! | AAGTTTTGCTTCAACAAGTT+TGG | - | chr8_3:5265175-5265194 | None:intergenic | 30.0% |
| GAGAGAAAAGTTATCAACTT+TGG | - | chr8_3:5265236-5265255 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | - | chr8_3:5265341-5265360 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | + | chr8_3:5265556-5265575 | Msa1271810:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | + | chr8_3:5265577-5265596 | Msa1271810:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | + | chr8_3:5265658-5265677 | Msa1271810:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | - | chr8_3:5266094-5266113 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | + | chr8_3:5266113-5266132 | Msa1271810:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | - | chr8_3:5266196-5266215 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | + | chr8_3:5266318-5266337 | Msa1271810:intron | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | - | chr8_3:5266516-5266535 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | + | chr8_3:5266533-5266552 | Msa1271810:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | - | chr8_3:5266599-5266618 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | + | chr8_3:5266622-5266641 | Msa1271810:CDS | 30.0% |
| CAAAACTTTGTCACTATCCA+TGG | + | chr8_3:5265187-5265206 | Msa1271810:exon | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | - | chr8_3:5265227-5265246 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | + | chr8_3:5265249-5265268 | Msa1271810:CDS | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | + | chr8_3:5265250-5265269 | Msa1271810:CDS | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | chr8_3:5265461-5265480 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | + | chr8_3:5265484-5265503 | Msa1271810:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | + | chr8_3:5265502-5265521 | Msa1271810:CDS | 35.0% | |
| CGGATTGATTGTATGTTTGT+TGG | - | chr8_3:5266352-5266371 | None:intergenic | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | + | chr8_3:5266568-5266587 | Msa1271810:CDS | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | + | chr8_3:5266603-5266622 | Msa1271810:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | + | chr8_3:5266616-5266635 | Msa1271810:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | - | chr8_3:5266667-5266686 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | - | chr8_3:5266699-5266718 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | - | chr8_3:5266813-5266832 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | + | chr8_3:5266843-5266862 | Msa1271810:three_prime_UTR | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | + | chr8_3:5266885-5266904 | Msa1271810:three_prime_UTR | 35.0% | |
| CAAAACTTTGTCACTATCCA+TGG | + | chr8_3:5265187-5265206 | Msa1271810:exon | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | - | chr8_3:5265227-5265246 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | + | chr8_3:5265249-5265268 | Msa1271810:CDS | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | + | chr8_3:5265250-5265269 | Msa1271810:CDS | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | chr8_3:5265461-5265480 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | + | chr8_3:5265484-5265503 | Msa1271810:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | + | chr8_3:5265502-5265521 | Msa1271810:CDS | 35.0% | |
| CGGATTGATTGTATGTTTGT+TGG | - | chr8_3:5266352-5266371 | None:intergenic | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | + | chr8_3:5266568-5266587 | Msa1271810:CDS | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | + | chr8_3:5266603-5266622 | Msa1271810:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | + | chr8_3:5266616-5266635 | Msa1271810:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | - | chr8_3:5266667-5266686 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | - | chr8_3:5266699-5266718 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | - | chr8_3:5266813-5266832 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | + | chr8_3:5266843-5266862 | Msa1271810:three_prime_UTR | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | + | chr8_3:5266885-5266904 | Msa1271810:three_prime_UTR | 35.0% | |
| CATCATTGGACTCTCTAACT+CGG | - | chr8_3:5265213-5265232 | None:intergenic | 40.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | - | chr8_3:5265427-5265446 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | - | chr8_3:5265452-5265471 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | - | chr8_3:5265471-5265490 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | + | chr8_3:5266012-5266031 | Msa1271810:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | - | chr8_3:5266021-5266040 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | chr8_3:5266322-5266341 | Msa1271810:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | - | chr8_3:5266375-5266394 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | - | chr8_3:5266376-5266395 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | - | chr8_3:5266552-5266571 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | + | chr8_3:5266582-5266601 | Msa1271810:CDS | 40.0% | |
| CATCATTGGACTCTCTAACT+CGG | - | chr8_3:5265213-5265232 | None:intergenic | 40.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | - | chr8_3:5265427-5265446 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | - | chr8_3:5265452-5265471 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | - | chr8_3:5265471-5265490 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | + | chr8_3:5266012-5266031 | Msa1271810:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | - | chr8_3:5266021-5266040 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | chr8_3:5266322-5266341 | Msa1271810:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | - | chr8_3:5266375-5266394 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | - | chr8_3:5266376-5266395 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | - | chr8_3:5266552-5266571 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | + | chr8_3:5266582-5266601 | Msa1271810:CDS | 40.0% | |
| GGCCGAACCTTGAATTATCA+AGG | - | chr8_3:5266118-5266137 | None:intergenic | 45.0% | |
| GGCCGAACCTTGAATTATCA+AGG | - | chr8_3:5266118-5266137 | None:intergenic | 45.0% | |
| !! | ATTATATTTATAATAACAAT+TGG | - | chr8_3:5266419-5266438 | None:intergenic | 5.0% |
| !! | ATTATATTTATAATAACAAT+TGG | - | chr8_3:5266419-5266438 | None:intergenic | 5.0% |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | - | chr8_3:5266339-5266358 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+CGG | - | chr8_3:5266372-5266391 | None:intergenic | 50.0% | |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | - | chr8_3:5266339-5266358 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+CGG | - | chr8_3:5266372-5266391 | None:intergenic | 50.0% | |
| TGGACTCTCTAACTCGGCCA+TGG | - | chr8_3:5265207-5265226 | None:intergenic | 55.0% | |
| TGGACTCTCTAACTCGGCCA+TGG | - | chr8_3:5265207-5265226 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 5265174 | 5266938 | 5265174 | ID=Msa1271810;Name=Msa1271810 |
| chr8_3 | mRNA | 5265174 | 5266938 | 5265174 | ID=Msa1271810-mRNA-1;Parent=Msa1271810;Name=Msa1271810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=32|1|1|1|1|1|2|107|200 |
| chr8_3 | exon | 5265174 | 5265531 | 5265174 | ID=Msa1271810-mRNA-1:exon:1836;Parent=Msa1271810-mRNA-1 |
| chr8_3 | exon | 5266555 | 5266938 | 5266555 | ID=Msa1271810-mRNA-1:exon:1837;Parent=Msa1271810-mRNA-1 |
| chr8_3 | five_prime_UTR | 5265174 | 5265205 | 5265174 | ID=Msa1271810-mRNA-1:five_prime_utr;Parent=Msa1271810-mRNA-1 |
| chr8_3 | CDS | 5265206 | 5265531 | 5265206 | ID=Msa1271810-mRNA-1:cds;Parent=Msa1271810-mRNA-1 |
| chr8_3 | CDS | 5266555 | 5266831 | 5266555 | ID=Msa1271810-mRNA-1:cds;Parent=Msa1271810-mRNA-1 |
| chr8_3 | three_prime_UTR | 5266832 | 5266938 | 5266832 | ID=Msa1271810-mRNA-1:three_prime_utr;Parent=Msa1271810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
