Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231890 | AFK47155.1 | 80.000 | 125 | 2 | 1 | 43 | 167 | 47 | 148 | 5.37e-62 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231890 | sp|P60040|RL72_ARATH | 71.200 | 125 | 13 | 1 | 43 | 167 | 141 | 242 | 3.66e-58 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231890 | I3T3R3 | 80.000 | 125 | 2 | 1 | 43 | 167 | 47 | 148 | 2.56e-62 | 198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0424920 | Msa1231890 | 0.804702 | 1.902521e-49 | -8.615850e-47 |
| Msa1082500 | Msa1231890 | 0.809733 | 1.635456e-50 | -8.615850e-47 |
| Msa0903960 | Msa1231890 | 0.811807 | 5.819503e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231890 | MtrunA17_Chr1g0155331 | 80.000 | 125 | 2 | 1 | 43 | 167 | 143 | 244 | 6.57e-66 | 201 |
| Msa1231890 | MtrunA17_Chr2g0298841 | 80.000 | 125 | 2 | 1 | 43 | 167 | 143 | 244 | 8.00e-66 | 201 |
| Msa1231890 | MtrunA17_Chr4g0002321 | 72.800 | 125 | 11 | 1 | 43 | 167 | 142 | 243 | 4.41e-60 | 186 |
| Msa1231890 | MtrunA17_Chr1g0155311 | 95.082 | 61 | 3 | 0 | 97 | 157 | 2 | 62 | 4.70e-39 | 127 |
| Msa1231890 | MtrunA17_Chr7g0237701 | 44.800 | 125 | 46 | 1 | 43 | 167 | 145 | 246 | 9.58e-36 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231890 | AT2G01250.1 | 71.200 | 125 | 13 | 1 | 43 | 167 | 141 | 242 | 3.72e-59 | 184 |
| Msa1231890 | AT2G44120.1 | 69.600 | 125 | 15 | 1 | 43 | 167 | 141 | 242 | 1.60e-58 | 182 |
| Msa1231890 | AT2G44120.2 | 69.600 | 125 | 15 | 1 | 43 | 167 | 146 | 247 | 1.76e-58 | 183 |
| Msa1231890 | AT3G13580.5 | 68.800 | 125 | 16 | 1 | 43 | 167 | 143 | 244 | 1.99e-57 | 180 |
| Msa1231890 | AT3G13580.4 | 68.800 | 125 | 16 | 1 | 43 | 167 | 143 | 244 | 1.99e-57 | 180 |
| Msa1231890 | AT3G13580.2 | 68.800 | 125 | 16 | 1 | 43 | 167 | 143 | 244 | 1.99e-57 | 180 |
| Msa1231890 | AT3G13580.3 | 68.800 | 125 | 16 | 1 | 43 | 167 | 143 | 244 | 1.99e-57 | 180 |
| Msa1231890 | AT3G13580.1 | 68.800 | 125 | 16 | 1 | 43 | 167 | 143 | 244 | 1.99e-57 | 180 |
| Msa1231890 | AT3G13580.7 | 68.800 | 125 | 16 | 1 | 43 | 167 | 143 | 244 | 1.99e-57 | 180 |
| Msa1231890 | AT3G13580.8 | 68.800 | 125 | 16 | 1 | 43 | 167 | 143 | 244 | 1.99e-57 | 180 |
| Msa1231890 | AT3G13580.6 | 68.800 | 125 | 16 | 1 | 43 | 167 | 143 | 244 | 1.99e-57 | 180 |
| Msa1231890 | AT3G13580.9 | 68.800 | 125 | 16 | 1 | 43 | 167 | 143 | 244 | 1.99e-57 | 180 |
| Msa1231890 | AT1G80750.1 | 41.600 | 125 | 49 | 2 | 44 | 167 | 146 | 247 | 1.41e-23 | 93.2 |
| Msa1231890 | AT2G01250.2 | 75.000 | 36 | 9 | 0 | 43 | 78 | 141 | 176 | 6.78e-11 | 58.5 |
Find 38 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCTGACTTTGGCAAAT+TGG | 0.175298 | 8_2:-8153519 | None:intergenic |
| ACTCATTAGAAGGATGAATT+AGG | 0.270598 | 8_2:+8153897 | Msa1231890:CDS |
| TTTCAAGCTCAAAGCTCCTT+TGG | 0.284641 | 8_2:+8153801 | Msa1231890:CDS |
| AGTGTTCAATTGCAAGTTCT+TGG | 0.299634 | 8_2:+8153688 | Msa1231890:intron |
| TTCAAGCTCAAAGCTCCTTT+GGG | 0.329811 | 8_2:+8153802 | Msa1231890:CDS |
| CATTCTGACTTTGGCAAATT+GGG | 0.334374 | 8_2:-8153518 | None:intergenic |
| TTGATCTACAAGCGCGGTTA+TGG | 0.337108 | 8_2:+8153339 | Msa1231890:CDS |
| TCAATTCTCTAACACTCTTC+AGG | 0.373375 | 8_2:-8153320 | None:intergenic |
| AACAACTCACATTCTGACTT+TGG | 0.407362 | 8_2:-8153527 | None:intergenic |
| GTGTTCAATTGCAAGTTCTT+GGG | 0.436135 | 8_2:+8153689 | Msa1231890:intron |
| TTCAGGATCAACAGAATTAA+CGG | 0.443808 | 8_2:-8153303 | None:intergenic |
| TTCTACATTCTAACATGCTA+AGG | 0.445971 | 8_2:+8152501 | Msa1231890:CDS |
| ACATCAATGAACTCATTAGA+AGG | 0.462677 | 8_2:+8153887 | Msa1231890:CDS |
| TGAAGTGAGGTCCAACAGTC+AGG | 0.464367 | 8_2:-8153753 | None:intergenic |
| AGATAACTCTATCATTGAAC+AGG | 0.482014 | 8_2:+8153392 | Msa1231890:CDS |
| AAGAGAAATCACTATGTTGA+AGG | 0.489111 | 8_2:+8153838 | Msa1231890:CDS |
| AAAGGAGCTTTGAGCTTGAA+AGG | 0.504831 | 8_2:-8153799 | None:intergenic |
| GAGAGGCAAACAACTTCCTA+TGG | 0.504947 | 8_2:+8153776 | Msa1231890:CDS |
| TAGCATACTCATAAAGAAAG+AGG | 0.515400 | 8_2:-8152469 | None:intergenic |
| TTGCAAGTTCTTGGGAAACA+TGG | 0.518527 | 8_2:+8153697 | Msa1231890:CDS |
| TATGTTGAAGGTGGTGATGC+TGG | 0.533299 | 8_2:+8153850 | Msa1231890:CDS |
| GCGGTTATGGAAAGGTTGAT+AGG | 0.549876 | 8_2:+8153352 | Msa1231890:CDS |
| TTCTTCTTCATGCCACCCAA+AGG | 0.554983 | 8_2:-8153817 | None:intergenic |
| ATCCACGAGATCCTGACTGT+TGG | 0.556683 | 8_2:+8153742 | Msa1231890:CDS |
| AGGTGGTGATGCTGGTAAGA+GGG | 0.564495 | 8_2:+8153858 | Msa1231890:CDS |
| CTTTGAGCTTGAAAGGCCAT+AGG | 0.568033 | 8_2:-8153792 | None:intergenic |
| AAGCTCAAAGCTCCTTTGGG+TGG | 0.570830 | 8_2:+8153805 | Msa1231890:CDS |
| TTGTTTGCCTCTCTGAAGTG+AGG | 0.573961 | 8_2:-8153766 | None:intergenic |
| GTCCAACAGTCAGGATCTCG+TGG | 0.575620 | 8_2:-8153744 | None:intergenic |
| AAGGTGGTGATGCTGGTAAG+AGG | 0.583947 | 8_2:+8153857 | Msa1231890:CDS |
| CTACAAGCGCGGTTATGGAA+AGG | 0.599869 | 8_2:+8153344 | Msa1231890:CDS |
| TGGTGATGCTGGTAAGAGGG+AGG | 0.608332 | 8_2:+8153861 | Msa1231890:CDS |
| TCAATGTTCATGATAAGATG+AGG | 0.610708 | 8_2:+8152426 | Msa1231890:CDS |
| CAATGTTCATGATAAGATGA+GGG | 0.634820 | 8_2:+8152427 | Msa1231890:CDS |
| AGAAATCACTATGTTGAAGG+TGG | 0.637998 | 8_2:+8153841 | Msa1231890:CDS |
| AATTGGGTAAAGTACAGAGT+CGG | 0.647532 | 8_2:-8153502 | None:intergenic |
| AGAGAATTGATCTACAAGCG+CGG | 0.721136 | 8_2:+8153333 | Msa1231890:CDS |
| TGTTGGACCTCACTTCAGAG+AGG | 0.737396 | 8_2:+8153759 | Msa1231890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATAGAAAAATTTAAC+CGG | - | chr8_2:8153659-8153678 | None:intergenic | 15.0% |
| !! | GAAAAATAGAAAAATTTAAC+CGG | - | chr8_2:8153659-8153678 | None:intergenic | 15.0% |
| !! | TCTCAGTTAAATTAAGTTAA+TGG | + | chr8_2:8152658-8152677 | Msa1231890:intron | 20.0% |
| !!! | AATTTTTTTGGCATATATTC+TGG | - | chr8_2:8153003-8153022 | None:intergenic | 20.0% |
| !!! | GAATACATGGTTAATTTTTT+TGG | - | chr8_2:8153015-8153034 | None:intergenic | 20.0% |
| !! | TCTCAGTTAAATTAAGTTAA+TGG | + | chr8_2:8152658-8152677 | Msa1231890:intron | 20.0% |
| !!! | AATTTTTTTGGCATATATTC+TGG | - | chr8_2:8153003-8153022 | None:intergenic | 20.0% |
| !!! | GAATACATGGTTAATTTTTT+TGG | - | chr8_2:8153015-8153034 | None:intergenic | 20.0% |
| !! | AAAGTTCTCACAATTTTTGT+AGG | + | chr8_2:8152697-8152716 | Msa1231890:intron | 25.0% |
| !! | ACAATTTTTGTAGGAGTTTA+TGG | + | chr8_2:8152706-8152725 | Msa1231890:intron | 25.0% |
| ! | AATATTATCCGATTGAACAA+TGG | - | chr8_2:8152798-8152817 | None:intergenic | 25.0% |
| ! | ATTTACTTCACAATACAACA+AGG | - | chr8_2:8152862-8152881 | None:intergenic | 25.0% |
| ! | TGCAATAAACCAGATATTAT+TGG | - | chr8_2:8152976-8152995 | None:intergenic | 25.0% |
| !!! | ATTTTGAGGAAAAACTACTT+TGG | - | chr8_2:8153064-8153083 | None:intergenic | 25.0% |
| !!! | GAATTTTAAAAACTACACAG+TGG | + | chr8_2:8153276-8153295 | Msa1231890:intron | 25.0% |
| !! | AAAGTTCTCACAATTTTTGT+AGG | + | chr8_2:8152697-8152716 | Msa1231890:intron | 25.0% |
| !! | ACAATTTTTGTAGGAGTTTA+TGG | + | chr8_2:8152706-8152725 | Msa1231890:intron | 25.0% |
| ! | AATATTATCCGATTGAACAA+TGG | - | chr8_2:8152798-8152817 | None:intergenic | 25.0% |
| ! | ATTTACTTCACAATACAACA+AGG | - | chr8_2:8152862-8152881 | None:intergenic | 25.0% |
| ! | TGCAATAAACCAGATATTAT+TGG | - | chr8_2:8152976-8152995 | None:intergenic | 25.0% |
| !!! | ATTTTGAGGAAAAACTACTT+TGG | - | chr8_2:8153064-8153083 | None:intergenic | 25.0% |
| !!! | GAATTTTAAAAACTACACAG+TGG | + | chr8_2:8153276-8153295 | Msa1231890:intron | 25.0% |
| TCAATGTTCATGATAAGATG+AGG | + | chr8_2:8152426-8152445 | Msa1231890:CDS | 30.0% | |
| CAATGTTCATGATAAGATGA+GGG | + | chr8_2:8152427-8152446 | Msa1231890:CDS | 30.0% | |
| TAGCATACTCATAAAGAAAG+AGG | - | chr8_2:8152472-8152491 | None:intergenic | 30.0% | |
| TTCTACATTCTAACATGCTA+AGG | + | chr8_2:8152501-8152520 | Msa1231890:CDS | 30.0% | |
| !! | TTTTGAAGAGAGATTTCAGA+AGG | + | chr8_2:8152541-8152560 | Msa1231890:intron | 30.0% |
| !!! | AGTTAATGGTTTTTTCACGT+AGG | + | chr8_2:8152672-8152691 | Msa1231890:intron | 30.0% |
| AATCATGCACAGAAAAATAC+AGG | - | chr8_2:8152919-8152938 | None:intergenic | 30.0% | |
| ATGCTATTGCCAATAATATC+TGG | + | chr8_2:8152964-8152983 | Msa1231890:intron | 30.0% | |
| !!! | TTTTTTGGCATATATTCTGG+AGG | - | chr8_2:8153000-8153019 | None:intergenic | 30.0% |
| AATTAACCATGTATTCTGCA+TGG | + | chr8_2:8153019-8153038 | Msa1231890:intron | 30.0% | |
| ATTAACCATGTATTCTGCAT+GGG | + | chr8_2:8153020-8153039 | Msa1231890:intron | 30.0% | |
| AAAAACTACTTTGGCAAGTA+TGG | - | chr8_2:8153055-8153074 | None:intergenic | 30.0% | |
| !!! | TTAGTTACATGCTGATTTTG+AGG | - | chr8_2:8153078-8153097 | None:intergenic | 30.0% |
| TCAAAATCAGCATGTAACTA+AGG | + | chr8_2:8153077-8153096 | Msa1231890:intron | 30.0% | |
| ! | TAGAATCTGAAGTCAAATGA+AGG | - | chr8_2:8153225-8153244 | None:intergenic | 30.0% |
| TTCAGGATCAACAGAATTAA+CGG | - | chr8_2:8153306-8153325 | None:intergenic | 30.0% | |
| AGATAACTCTATCATTGAAC+AGG | + | chr8_2:8153392-8153411 | Msa1231890:CDS | 30.0% | |
| !! | GGTGCTATTATTATTGTTGA+AGG | + | chr8_2:8153625-8153644 | Msa1231890:intron | 30.0% |
| AAGAGAAATCACTATGTTGA+AGG | + | chr8_2:8153838-8153857 | Msa1231890:CDS | 30.0% | |
| ACATCAATGAACTCATTAGA+AGG | + | chr8_2:8153887-8153906 | Msa1231890:CDS | 30.0% | |
| TCAATGTTCATGATAAGATG+AGG | + | chr8_2:8152426-8152445 | Msa1231890:CDS | 30.0% | |
| CAATGTTCATGATAAGATGA+GGG | + | chr8_2:8152427-8152446 | Msa1231890:CDS | 30.0% | |
| TAGCATACTCATAAAGAAAG+AGG | - | chr8_2:8152472-8152491 | None:intergenic | 30.0% | |
| TTCTACATTCTAACATGCTA+AGG | + | chr8_2:8152501-8152520 | Msa1231890:CDS | 30.0% | |
| !! | TTTTGAAGAGAGATTTCAGA+AGG | + | chr8_2:8152541-8152560 | Msa1231890:intron | 30.0% |
| !!! | AGTTAATGGTTTTTTCACGT+AGG | + | chr8_2:8152672-8152691 | Msa1231890:intron | 30.0% |
| AATCATGCACAGAAAAATAC+AGG | - | chr8_2:8152919-8152938 | None:intergenic | 30.0% | |
| ATGCTATTGCCAATAATATC+TGG | + | chr8_2:8152964-8152983 | Msa1231890:intron | 30.0% | |
| !!! | TTTTTTGGCATATATTCTGG+AGG | - | chr8_2:8153000-8153019 | None:intergenic | 30.0% |
| AATTAACCATGTATTCTGCA+TGG | + | chr8_2:8153019-8153038 | Msa1231890:intron | 30.0% | |
| ATTAACCATGTATTCTGCAT+GGG | + | chr8_2:8153020-8153039 | Msa1231890:intron | 30.0% | |
| AAAAACTACTTTGGCAAGTA+TGG | - | chr8_2:8153055-8153074 | None:intergenic | 30.0% | |
| !!! | TTAGTTACATGCTGATTTTG+AGG | - | chr8_2:8153078-8153097 | None:intergenic | 30.0% |
| TCAAAATCAGCATGTAACTA+AGG | + | chr8_2:8153077-8153096 | Msa1231890:intron | 30.0% | |
| ! | TAGAATCTGAAGTCAAATGA+AGG | - | chr8_2:8153225-8153244 | None:intergenic | 30.0% |
| TTCAGGATCAACAGAATTAA+CGG | - | chr8_2:8153306-8153325 | None:intergenic | 30.0% | |
| AGATAACTCTATCATTGAAC+AGG | + | chr8_2:8153392-8153411 | Msa1231890:CDS | 30.0% | |
| !! | GGTGCTATTATTATTGTTGA+AGG | + | chr8_2:8153625-8153644 | Msa1231890:intron | 30.0% |
| AAGAGAAATCACTATGTTGA+AGG | + | chr8_2:8153838-8153857 | Msa1231890:CDS | 30.0% | |
| ACATCAATGAACTCATTAGA+AGG | + | chr8_2:8153887-8153906 | Msa1231890:CDS | 30.0% | |
| CAAATTACCTTAACCAAGGT+AGG | - | chr8_2:8152596-8152615 | None:intergenic | 35.0% | |
| GGAACAAATTACCTTAACCA+AGG | - | chr8_2:8152600-8152619 | None:intergenic | 35.0% | |
| GATAGAAGCTAACTGAAACT+CGG | - | chr8_2:8152621-8152640 | None:intergenic | 35.0% | |
| AAATCATGTACATGTCTCCA+AGG | + | chr8_2:8152878-8152897 | Msa1231890:intron | 35.0% | |
| AAGGCATACTATGACGAAAA+CGG | + | chr8_2:8153096-8153115 | Msa1231890:intron | 35.0% | |
| CTTATGTTAGAACATGCGAT+AGG | + | chr8_2:8153195-8153214 | Msa1231890:intron | 35.0% | |
| TCAATTCTCTAACACTCTTC+AGG | - | chr8_2:8153323-8153342 | None:intergenic | 35.0% | |
| TCTGAACTGTATGACATAGA+TGG | + | chr8_2:8153465-8153484 | Msa1231890:intron | 35.0% | |
| CTGAACTGTATGACATAGAT+GGG | + | chr8_2:8153466-8153485 | Msa1231890:intron | 35.0% | |
| AATTGGGTAAAGTACAGAGT+CGG | - | chr8_2:8153505-8153524 | None:intergenic | 35.0% | |
| CATTCTGACTTTGGCAAATT+GGG | - | chr8_2:8153521-8153540 | None:intergenic | 35.0% | |
| ACATTCTGACTTTGGCAAAT+TGG | - | chr8_2:8153522-8153541 | None:intergenic | 35.0% | |
| AACAACTCACATTCTGACTT+TGG | - | chr8_2:8153530-8153549 | None:intergenic | 35.0% | |
| AATAATAGCACCACCATACA+GGG | - | chr8_2:8153617-8153636 | None:intergenic | 35.0% | |
| TAATAATAGCACCACCATAC+AGG | - | chr8_2:8153618-8153637 | None:intergenic | 35.0% | |
| ATTGTTGAAGGTTATGTTGC+CGG | + | chr8_2:8153637-8153656 | Msa1231890:intron | 35.0% | |
| AGTGTTCAATTGCAAGTTCT+TGG | + | chr8_2:8153688-8153707 | Msa1231890:intron | 35.0% | |
| GTGTTCAATTGCAAGTTCTT+GGG | + | chr8_2:8153689-8153708 | Msa1231890:intron | 35.0% | |
| AGAAATCACTATGTTGAAGG+TGG | + | chr8_2:8153841-8153860 | Msa1231890:CDS | 35.0% | |
| CAAATTACCTTAACCAAGGT+AGG | - | chr8_2:8152596-8152615 | None:intergenic | 35.0% | |
| GGAACAAATTACCTTAACCA+AGG | - | chr8_2:8152600-8152619 | None:intergenic | 35.0% | |
| GATAGAAGCTAACTGAAACT+CGG | - | chr8_2:8152621-8152640 | None:intergenic | 35.0% | |
| AAATCATGTACATGTCTCCA+AGG | + | chr8_2:8152878-8152897 | Msa1231890:intron | 35.0% | |
| AAGGCATACTATGACGAAAA+CGG | + | chr8_2:8153096-8153115 | Msa1231890:intron | 35.0% | |
| CTTATGTTAGAACATGCGAT+AGG | + | chr8_2:8153195-8153214 | Msa1231890:intron | 35.0% | |
| TCAATTCTCTAACACTCTTC+AGG | - | chr8_2:8153323-8153342 | None:intergenic | 35.0% | |
| TCTGAACTGTATGACATAGA+TGG | + | chr8_2:8153465-8153484 | Msa1231890:intron | 35.0% | |
| CTGAACTGTATGACATAGAT+GGG | + | chr8_2:8153466-8153485 | Msa1231890:intron | 35.0% | |
| AATTGGGTAAAGTACAGAGT+CGG | - | chr8_2:8153505-8153524 | None:intergenic | 35.0% | |
| CATTCTGACTTTGGCAAATT+GGG | - | chr8_2:8153521-8153540 | None:intergenic | 35.0% | |
| ACATTCTGACTTTGGCAAAT+TGG | - | chr8_2:8153522-8153541 | None:intergenic | 35.0% | |
| AACAACTCACATTCTGACTT+TGG | - | chr8_2:8153530-8153549 | None:intergenic | 35.0% | |
| AATAATAGCACCACCATACA+GGG | - | chr8_2:8153617-8153636 | None:intergenic | 35.0% | |
| TAATAATAGCACCACCATAC+AGG | - | chr8_2:8153618-8153637 | None:intergenic | 35.0% | |
| ATTGTTGAAGGTTATGTTGC+CGG | + | chr8_2:8153637-8153656 | Msa1231890:intron | 35.0% | |
| AGTGTTCAATTGCAAGTTCT+TGG | + | chr8_2:8153688-8153707 | Msa1231890:intron | 35.0% | |
| GTGTTCAATTGCAAGTTCTT+GGG | + | chr8_2:8153689-8153708 | Msa1231890:intron | 35.0% | |
| AGAAATCACTATGTTGAAGG+TGG | + | chr8_2:8153841-8153860 | Msa1231890:CDS | 35.0% | |
| GAACAATGGCTTCTTGCATA+TGG | - | chr8_2:8152784-8152803 | None:intergenic | 40.0% | |
| GCAAGAAGCCATTGTTCAAT+CGG | + | chr8_2:8152787-8152806 | Msa1231890:intron | 40.0% | |
| ! | ACATGTCTCCAAGGCATTAT+AGG | + | chr8_2:8152887-8152906 | Msa1231890:intron | 40.0% |
| AGGCATACTATGACGAAAAC+GGG | + | chr8_2:8153097-8153116 | Msa1231890:intron | 40.0% | |
| !! | CATTCCTTCAGAAGCATTTC+CGG | - | chr8_2:8153137-8153156 | None:intergenic | 40.0% |
| ! | ATCTGAAGTCAAATGAAGGC+CGG | - | chr8_2:8153221-8153240 | None:intergenic | 40.0% |
| AGAGAATTGATCTACAAGCG+CGG | + | chr8_2:8153333-8153352 | Msa1231890:CDS | 40.0% | |
| TGTGTGATCGAATGAAAGCA+GGG | - | chr8_2:8153437-8153456 | None:intergenic | 40.0% | |
| ATAATAGCACCACCATACAG+GGG | - | chr8_2:8153616-8153635 | None:intergenic | 40.0% | |
| TTGCAAGTTCTTGGGAAACA+TGG | + | chr8_2:8153697-8153716 | Msa1231890:CDS | 40.0% | |
| !! | AAAGGAGCTTTGAGCTTGAA+AGG | - | chr8_2:8153802-8153821 | None:intergenic | 40.0% |
| TTTCAAGCTCAAAGCTCCTT+TGG | + | chr8_2:8153801-8153820 | Msa1231890:CDS | 40.0% | |
| TTCAAGCTCAAAGCTCCTTT+GGG | + | chr8_2:8153802-8153821 | Msa1231890:CDS | 40.0% | |
| GAACAATGGCTTCTTGCATA+TGG | - | chr8_2:8152784-8152803 | None:intergenic | 40.0% | |
| GCAAGAAGCCATTGTTCAAT+CGG | + | chr8_2:8152787-8152806 | Msa1231890:intron | 40.0% | |
| ! | ACATGTCTCCAAGGCATTAT+AGG | + | chr8_2:8152887-8152906 | Msa1231890:intron | 40.0% |
| AGGCATACTATGACGAAAAC+GGG | + | chr8_2:8153097-8153116 | Msa1231890:intron | 40.0% | |
| !! | CATTCCTTCAGAAGCATTTC+CGG | - | chr8_2:8153137-8153156 | None:intergenic | 40.0% |
| ! | ATCTGAAGTCAAATGAAGGC+CGG | - | chr8_2:8153221-8153240 | None:intergenic | 40.0% |
| AGAGAATTGATCTACAAGCG+CGG | + | chr8_2:8153333-8153352 | Msa1231890:CDS | 40.0% | |
| TGTGTGATCGAATGAAAGCA+GGG | - | chr8_2:8153437-8153456 | None:intergenic | 40.0% | |
| ATAATAGCACCACCATACAG+GGG | - | chr8_2:8153616-8153635 | None:intergenic | 40.0% | |
| TTGCAAGTTCTTGGGAAACA+TGG | + | chr8_2:8153697-8153716 | Msa1231890:CDS | 40.0% | |
| !! | AAAGGAGCTTTGAGCTTGAA+AGG | - | chr8_2:8153802-8153821 | None:intergenic | 40.0% |
| TTTCAAGCTCAAAGCTCCTT+TGG | + | chr8_2:8153801-8153820 | Msa1231890:CDS | 40.0% | |
| TTCAAGCTCAAAGCTCCTTT+GGG | + | chr8_2:8153802-8153821 | Msa1231890:CDS | 40.0% | |
| ATCTGATGTTCGACCTACCT+TGG | + | chr8_2:8152580-8152599 | Msa1231890:intron | 45.0% | |
| TGTTCGACCTACCTTGGTTA+AGG | + | chr8_2:8152586-8152605 | Msa1231890:intron | 45.0% | |
| GGACTAAGCCTATAATGCCT+TGG | - | chr8_2:8152898-8152917 | None:intergenic | 45.0% | |
| AACCATGTATTCTGCATGGG+TGG | + | chr8_2:8153023-8153042 | Msa1231890:intron | 45.0% | |
| ACCATGTATTCTGCATGGGT+GGG | + | chr8_2:8153024-8153043 | Msa1231890:intron | 45.0% | |
| CATTTCCGGTGAACAATGGA+AGG | - | chr8_2:8153123-8153142 | None:intergenic | 45.0% | |
| ! | GAAGCATTTCCGGTGAACAA+TGG | - | chr8_2:8153127-8153146 | None:intergenic | 45.0% |
| TTCACCGGAAATGCTTCTGA+AGG | + | chr8_2:8153130-8153149 | Msa1231890:intron | 45.0% | |
| TGTTAGAACATGCGATAGGC+CGG | + | chr8_2:8153199-8153218 | Msa1231890:intron | 45.0% | |
| TTGATCTACAAGCGCGGTTA+TGG | + | chr8_2:8153339-8153358 | Msa1231890:CDS | 45.0% | |
| ! | GCGGTTATGGAAAGGTTGAT+AGG | + | chr8_2:8153352-8153371 | Msa1231890:CDS | 45.0% |
| CTGTGTGATCGAATGAAAGC+AGG | - | chr8_2:8153438-8153457 | None:intergenic | 45.0% | |
| !! | TTGTTTGCCTCTCTGAAGTG+AGG | - | chr8_2:8153769-8153788 | None:intergenic | 45.0% |
| GAGAGGCAAACAACTTCCTA+TGG | + | chr8_2:8153776-8153795 | Msa1231890:CDS | 45.0% | |
| CTTTGAGCTTGAAAGGCCAT+AGG | - | chr8_2:8153795-8153814 | None:intergenic | 45.0% | |
| TTCTTCTTCATGCCACCCAA+AGG | - | chr8_2:8153820-8153839 | None:intergenic | 45.0% | |
| ! | TATGTTGAAGGTGGTGATGC+TGG | + | chr8_2:8153850-8153869 | Msa1231890:CDS | 45.0% |
| ATCTGATGTTCGACCTACCT+TGG | + | chr8_2:8152580-8152599 | Msa1231890:intron | 45.0% | |
| TGTTCGACCTACCTTGGTTA+AGG | + | chr8_2:8152586-8152605 | Msa1231890:intron | 45.0% | |
| GGACTAAGCCTATAATGCCT+TGG | - | chr8_2:8152898-8152917 | None:intergenic | 45.0% | |
| AACCATGTATTCTGCATGGG+TGG | + | chr8_2:8153023-8153042 | Msa1231890:intron | 45.0% | |
| ACCATGTATTCTGCATGGGT+GGG | + | chr8_2:8153024-8153043 | Msa1231890:intron | 45.0% | |
| CATTTCCGGTGAACAATGGA+AGG | - | chr8_2:8153123-8153142 | None:intergenic | 45.0% | |
| ! | GAAGCATTTCCGGTGAACAA+TGG | - | chr8_2:8153127-8153146 | None:intergenic | 45.0% |
| TTCACCGGAAATGCTTCTGA+AGG | + | chr8_2:8153130-8153149 | Msa1231890:intron | 45.0% | |
| TGTTAGAACATGCGATAGGC+CGG | + | chr8_2:8153199-8153218 | Msa1231890:intron | 45.0% | |
| TTGATCTACAAGCGCGGTTA+TGG | + | chr8_2:8153339-8153358 | Msa1231890:CDS | 45.0% | |
| ! | GCGGTTATGGAAAGGTTGAT+AGG | + | chr8_2:8153352-8153371 | Msa1231890:CDS | 45.0% |
| CTGTGTGATCGAATGAAAGC+AGG | - | chr8_2:8153438-8153457 | None:intergenic | 45.0% | |
| !! | TTGTTTGCCTCTCTGAAGTG+AGG | - | chr8_2:8153769-8153788 | None:intergenic | 45.0% |
| GAGAGGCAAACAACTTCCTA+TGG | + | chr8_2:8153776-8153795 | Msa1231890:CDS | 45.0% | |
| CTTTGAGCTTGAAAGGCCAT+AGG | - | chr8_2:8153795-8153814 | None:intergenic | 45.0% | |
| TTCTTCTTCATGCCACCCAA+AGG | - | chr8_2:8153820-8153839 | None:intergenic | 45.0% | |
| ! | TATGTTGAAGGTGGTGATGC+TGG | + | chr8_2:8153850-8153869 | Msa1231890:CDS | 45.0% |
| CTAAGGTTGCTTCTTGCTGC+AGG | + | chr8_2:8152518-8152537 | Msa1231890:intron | 50.0% | |
| TCCCACCCATGCAGAATACA+TGG | - | chr8_2:8153028-8153047 | None:intergenic | 50.0% | |
| ATGTATTCTGCATGGGTGGG+AGG | + | chr8_2:8153027-8153046 | Msa1231890:intron | 50.0% | |
| CTACAAGCGCGGTTATGGAA+AGG | + | chr8_2:8153344-8153363 | Msa1231890:CDS | 50.0% | |
| CTTGACCAATGTCCCCTGTA+TGG | + | chr8_2:8153601-8153620 | Msa1231890:intron | 50.0% | |
| ATCCACGAGATCCTGACTGT+TGG | + | chr8_2:8153742-8153761 | Msa1231890:CDS | 50.0% | |
| TGAAGTGAGGTCCAACAGTC+AGG | - | chr8_2:8153756-8153775 | None:intergenic | 50.0% | |
| TGTTGGACCTCACTTCAGAG+AGG | + | chr8_2:8153759-8153778 | Msa1231890:CDS | 50.0% | |
| AAGCTCAAAGCTCCTTTGGG+TGG | + | chr8_2:8153805-8153824 | Msa1231890:CDS | 50.0% | |
| ! | AAGGTGGTGATGCTGGTAAG+AGG | + | chr8_2:8153857-8153876 | Msa1231890:CDS | 50.0% |
| ! | AGGTGGTGATGCTGGTAAGA+GGG | + | chr8_2:8153858-8153877 | Msa1231890:CDS | 50.0% |
| CTAAGGTTGCTTCTTGCTGC+AGG | + | chr8_2:8152518-8152537 | Msa1231890:intron | 50.0% | |
| TCCCACCCATGCAGAATACA+TGG | - | chr8_2:8153028-8153047 | None:intergenic | 50.0% | |
| ATGTATTCTGCATGGGTGGG+AGG | + | chr8_2:8153027-8153046 | Msa1231890:intron | 50.0% | |
| CTACAAGCGCGGTTATGGAA+AGG | + | chr8_2:8153344-8153363 | Msa1231890:CDS | 50.0% | |
| CTTGACCAATGTCCCCTGTA+TGG | + | chr8_2:8153601-8153620 | Msa1231890:intron | 50.0% | |
| ATCCACGAGATCCTGACTGT+TGG | + | chr8_2:8153742-8153761 | Msa1231890:CDS | 50.0% | |
| TGAAGTGAGGTCCAACAGTC+AGG | - | chr8_2:8153756-8153775 | None:intergenic | 50.0% | |
| TGTTGGACCTCACTTCAGAG+AGG | + | chr8_2:8153759-8153778 | Msa1231890:CDS | 50.0% | |
| AAGCTCAAAGCTCCTTTGGG+TGG | + | chr8_2:8153805-8153824 | Msa1231890:CDS | 50.0% | |
| ! | AAGGTGGTGATGCTGGTAAG+AGG | + | chr8_2:8153857-8153876 | Msa1231890:CDS | 50.0% |
| ! | AGGTGGTGATGCTGGTAAGA+GGG | + | chr8_2:8153858-8153877 | Msa1231890:CDS | 50.0% |
| ACGGGCCTTCCATTGTTCAC+CGG | + | chr8_2:8153115-8153134 | Msa1231890:intron | 55.0% | |
| GACCAATGTCCCCTGTATGG+TGG | + | chr8_2:8153604-8153623 | Msa1231890:intron | 55.0% | |
| CACCACCATACAGGGGACAT+TGG | - | chr8_2:8153609-8153628 | None:intergenic | 55.0% | |
| GTCCAACAGTCAGGATCTCG+TGG | - | chr8_2:8153747-8153766 | None:intergenic | 55.0% | |
| ! | TGGTGATGCTGGTAAGAGGG+AGG | + | chr8_2:8153861-8153880 | Msa1231890:CDS | 55.0% |
| ACGGGCCTTCCATTGTTCAC+CGG | + | chr8_2:8153115-8153134 | Msa1231890:intron | 55.0% | |
| GACCAATGTCCCCTGTATGG+TGG | + | chr8_2:8153604-8153623 | Msa1231890:intron | 55.0% | |
| CACCACCATACAGGGGACAT+TGG | - | chr8_2:8153609-8153628 | None:intergenic | 55.0% | |
| GTCCAACAGTCAGGATCTCG+TGG | - | chr8_2:8153747-8153766 | None:intergenic | 55.0% | |
| ! | TGGTGATGCTGGTAAGAGGG+AGG | + | chr8_2:8153861-8153880 | Msa1231890:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 8152422 | 8153918 | 8152422 | ID=Msa1231890;Name=Msa1231890 |
| chr8_2 | mRNA | 8152422 | 8153918 | 8152422 | ID=Msa1231890-mRNA-1;Parent=Msa1231890;Name=Msa1231890-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.25|1|1|4|0|167 |
| chr8_2 | exon | 8152422 | 8152522 | 8152422 | ID=Msa1231890-mRNA-1:exon:3105;Parent=Msa1231890-mRNA-1 |
| chr8_2 | exon | 8153296 | 8153413 | 8153296 | ID=Msa1231890-mRNA-1:exon:3106;Parent=Msa1231890-mRNA-1 |
| chr8_2 | exon | 8153484 | 8153539 | 8153484 | ID=Msa1231890-mRNA-1:exon:3107;Parent=Msa1231890-mRNA-1 |
| chr8_2 | exon | 8153690 | 8153918 | 8153690 | ID=Msa1231890-mRNA-1:exon:3108;Parent=Msa1231890-mRNA-1 |
| chr8_2 | CDS | 8152422 | 8152522 | 8152422 | ID=Msa1231890-mRNA-1:cds;Parent=Msa1231890-mRNA-1 |
| chr8_2 | CDS | 8153296 | 8153413 | 8153296 | ID=Msa1231890-mRNA-1:cds;Parent=Msa1231890-mRNA-1 |
| chr8_2 | CDS | 8153484 | 8153539 | 8153484 | ID=Msa1231890-mRNA-1:cds;Parent=Msa1231890-mRNA-1 |
| chr8_2 | CDS | 8153690 | 8153918 | 8153690 | ID=Msa1231890-mRNA-1:cds;Parent=Msa1231890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
