Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234170 | XP_003627282.1 | 96.271 | 295 | 11 | 0 | 1 | 295 | 1 | 295 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234170 | sp|A4ZDG8|BSMT3_PETHY | 54.698 | 298 | 134 | 1 | 1 | 298 | 1 | 297 | 2.10e-115 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1234170 | Msa1314730 | 0.821986 | 3.015541e-53 | -8.615850e-47 |
| Msa1234170 | Msa1319000 | 0.802976 | 4.343851e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234170 | MtrunA17_Chr8g0343971 | 96.271 | 295 | 11 | 0 | 1 | 295 | 1 | 295 | 0.0 | 599 |
| Msa1234170 | MtrunA17_Chr8g0343981 | 72.756 | 312 | 85 | 0 | 1 | 312 | 1 | 312 | 1.08e-171 | 480 |
| Msa1234170 | MtrunA17_Chr8g0372671 | 68.512 | 289 | 90 | 1 | 1 | 289 | 1 | 288 | 3.02e-146 | 416 |
| Msa1234170 | MtrunA17_Chr3g0107591 | 68.905 | 283 | 87 | 1 | 7 | 289 | 6 | 287 | 3.00e-145 | 414 |
| Msa1234170 | MtrunA17_Chr4g0008111 | 66.782 | 289 | 95 | 1 | 1 | 289 | 1 | 288 | 1.19e-141 | 404 |
| Msa1234170 | MtrunA17_Chr6g0475241 | 64.746 | 295 | 102 | 2 | 1 | 294 | 1 | 294 | 1.47e-137 | 394 |
| Msa1234170 | MtrunA17_Chr8g0372821 | 65.052 | 289 | 100 | 1 | 1 | 289 | 1 | 288 | 2.31e-137 | 394 |
| Msa1234170 | MtrunA17_Chr5g0404631 | 60.811 | 296 | 114 | 2 | 1 | 295 | 11 | 305 | 3.33e-135 | 389 |
| Msa1234170 | MtrunA17_Chr6g0475221 | 64.336 | 286 | 93 | 2 | 1 | 286 | 1 | 277 | 2.61e-131 | 377 |
| Msa1234170 | MtrunA17_Chr3g0144871 | 45.270 | 296 | 151 | 2 | 1 | 290 | 1 | 291 | 1.10e-91 | 277 |
| Msa1234170 | MtrunA17_Chr5g0419851 | 45.118 | 297 | 154 | 4 | 1 | 290 | 61 | 355 | 3.14e-85 | 262 |
| Msa1234170 | MtrunA17_Chr8g0372801 | 67.424 | 132 | 43 | 0 | 90 | 221 | 31 | 162 | 1.01e-64 | 202 |
| Msa1234170 | MtrunA17_Chr7g0252361 | 36.824 | 296 | 175 | 3 | 5 | 294 | 3 | 292 | 7.95e-62 | 201 |
| Msa1234170 | MtrunA17_Chr3g0107871 | 39.493 | 276 | 156 | 3 | 25 | 294 | 2 | 272 | 1.02e-61 | 199 |
| Msa1234170 | MtrunA17_Chr3g0100101 | 37.299 | 311 | 165 | 8 | 1 | 291 | 10 | 310 | 9.07e-60 | 196 |
| Msa1234170 | MtrunA17_Chr5g0444921 | 36.278 | 317 | 166 | 8 | 1 | 291 | 13 | 319 | 3.72e-54 | 181 |
| Msa1234170 | MtrunA17_Chr1g0208641 | 37.906 | 277 | 144 | 7 | 28 | 291 | 39 | 300 | 2.03e-47 | 163 |
| Msa1234170 | MtrunA17_Chr1g0155451 | 44.604 | 139 | 70 | 2 | 161 | 293 | 9 | 146 | 3.89e-36 | 129 |
| Msa1234170 | MtrunA17_Chr6g0455071 | 48.246 | 114 | 48 | 2 | 137 | 244 | 11 | 119 | 2.28e-33 | 119 |
| Msa1234170 | MtrunA17_Chr1g0155491 | 48.837 | 172 | 76 | 6 | 1 | 161 | 1 | 171 | 3.00e-31 | 116 |
| Msa1234170 | MtrunA17_Chr3g0099281 | 39.181 | 171 | 92 | 5 | 1 | 161 | 13 | 181 | 4.71e-31 | 115 |
| Msa1234170 | MtrunA17_Chr1g0155461 | 43.827 | 162 | 81 | 4 | 1 | 152 | 1 | 162 | 1.94e-30 | 114 |
| Msa1234170 | MtrunA17_Chr7g0252501 | 39.669 | 121 | 66 | 1 | 168 | 288 | 38 | 151 | 8.52e-24 | 97.4 |
| Msa1234170 | MtrunA17_Chr1g0155481 | 44.330 | 97 | 47 | 2 | 156 | 246 | 4 | 99 | 1.83e-20 | 86.3 |
| Msa1234170 | MtrunA17_Chr7g0252341 | 40.000 | 130 | 71 | 4 | 35 | 161 | 7 | 132 | 2.80e-19 | 83.2 |
| Msa1234170 | MtrunA17_Chr3g0099271 | 35.075 | 134 | 67 | 4 | 168 | 291 | 15 | 138 | 1.76e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234170 | AT4G36470.1 | 45.277 | 307 | 150 | 5 | 2 | 295 | 5 | 306 | 1.15e-80 | 249 |
| Msa1234170 | AT5G66430.1 | 43.750 | 288 | 156 | 3 | 9 | 295 | 1 | 283 | 3.07e-79 | 245 |
| Msa1234170 | AT5G04370.1 | 45.520 | 279 | 145 | 3 | 9 | 285 | 41 | 314 | 3.33e-79 | 246 |
| Msa1234170 | AT5G04370.2 | 45.520 | 279 | 145 | 3 | 9 | 285 | 60 | 333 | 9.75e-79 | 246 |
| Msa1234170 | AT5G04370.3 | 45.520 | 279 | 145 | 3 | 9 | 285 | 46 | 319 | 1.19e-78 | 245 |
| Msa1234170 | AT5G04380.3 | 43.662 | 284 | 148 | 3 | 9 | 288 | 38 | 313 | 2.57e-78 | 244 |
| Msa1234170 | AT3G21950.1 | 44.014 | 284 | 148 | 4 | 6 | 285 | 3 | 279 | 1.52e-77 | 241 |
| Msa1234170 | AT5G38020.1 | 45.390 | 282 | 147 | 5 | 6 | 285 | 3 | 279 | 3.90e-77 | 240 |
| Msa1234170 | AT3G11480.1 | 42.456 | 285 | 154 | 3 | 5 | 285 | 27 | 305 | 4.92e-77 | 240 |
| Msa1234170 | AT5G04380.1 | 43.310 | 284 | 142 | 4 | 9 | 288 | 34 | 302 | 2.87e-74 | 233 |
| Msa1234170 | AT5G04380.2 | 44.813 | 241 | 128 | 1 | 48 | 288 | 7 | 242 | 2.96e-72 | 226 |
| Msa1234170 | AT3G21950.2 | 39.873 | 316 | 147 | 5 | 6 | 285 | 3 | 311 | 1.05e-71 | 227 |
| Msa1234170 | AT1G19640.1 | 44.408 | 304 | 150 | 5 | 1 | 286 | 1 | 303 | 2.20e-70 | 224 |
| Msa1234170 | AT5G38020.2 | 46.473 | 241 | 123 | 4 | 46 | 285 | 5 | 240 | 1.47e-68 | 217 |
| Msa1234170 | AT2G14060.1 | 41.637 | 281 | 159 | 3 | 9 | 288 | 14 | 290 | 4.00e-67 | 215 |
| Msa1234170 | AT2G14060.2 | 42.920 | 226 | 124 | 3 | 9 | 233 | 14 | 235 | 6.15e-57 | 185 |
| Msa1234170 | AT1G68040.1 | 39.863 | 291 | 151 | 5 | 9 | 288 | 13 | 290 | 1.80e-56 | 187 |
| Msa1234170 | AT5G55250.1 | 35.484 | 310 | 173 | 8 | 1 | 291 | 13 | 314 | 4.33e-56 | 186 |
| Msa1234170 | AT1G15125.1 | 33.333 | 315 | 183 | 8 | 9 | 309 | 1 | 302 | 3.24e-49 | 167 |
| Msa1234170 | AT5G55250.2 | 35.379 | 277 | 152 | 8 | 34 | 291 | 8 | 276 | 4.19e-49 | 167 |
| Msa1234170 | AT5G56300.1 | 34.323 | 303 | 167 | 7 | 5 | 288 | 20 | 309 | 2.51e-47 | 164 |
| Msa1234170 | AT4G26420.1 | 35.135 | 296 | 167 | 7 | 6 | 285 | 10 | 296 | 4.34e-47 | 163 |
| Msa1234170 | AT5G37990.1 | 37.543 | 293 | 156 | 8 | 9 | 285 | 10 | 291 | 5.75e-44 | 154 |
| Msa1234170 | AT5G38780.1 | 34.783 | 299 | 157 | 11 | 9 | 286 | 10 | 291 | 3.17e-43 | 152 |
| Msa1234170 | AT5G37970.1 | 36.177 | 293 | 160 | 7 | 9 | 285 | 10 | 291 | 9.77e-43 | 151 |
| Msa1234170 | AT5G38100.1 | 35.135 | 296 | 156 | 9 | 9 | 285 | 10 | 288 | 3.44e-42 | 149 |
| Msa1234170 | AT3G44840.1 | 34.812 | 293 | 167 | 8 | 9 | 292 | 7 | 284 | 8.98e-41 | 145 |
| Msa1234170 | AT4G26420.3 | 37.668 | 223 | 121 | 5 | 6 | 218 | 10 | 224 | 9.67e-41 | 143 |
| Msa1234170 | AT4G26420.2 | 38.182 | 220 | 118 | 5 | 9 | 218 | 1 | 212 | 5.51e-40 | 141 |
| Msa1234170 | AT5G38100.3 | 36.653 | 251 | 126 | 8 | 51 | 285 | 32 | 265 | 6.54e-40 | 143 |
| Msa1234170 | AT3G44870.1 | 35.517 | 290 | 155 | 8 | 9 | 288 | 7 | 274 | 1.84e-39 | 143 |
| Msa1234170 | AT1G66700.1 | 32.986 | 288 | 168 | 6 | 9 | 285 | 9 | 282 | 1.97e-39 | 142 |
| Msa1234170 | AT3G44860.1 | 35.959 | 292 | 151 | 9 | 9 | 285 | 7 | 277 | 5.96e-39 | 140 |
| Msa1234170 | AT5G38780.2 | 35.573 | 253 | 129 | 9 | 51 | 286 | 7 | 242 | 7.02e-39 | 139 |
| Msa1234170 | AT1G66720.1 | 31.818 | 286 | 174 | 5 | 9 | 285 | 9 | 282 | 1.08e-36 | 135 |
| Msa1234170 | AT1G15125.2 | 33.603 | 247 | 140 | 7 | 9 | 244 | 1 | 234 | 1.52e-34 | 126 |
| Msa1234170 | AT5G38100.2 | 36.937 | 222 | 108 | 7 | 9 | 213 | 10 | 216 | 9.43e-33 | 122 |
| Msa1234170 | AT5G38100.4 | 36.937 | 222 | 108 | 7 | 9 | 213 | 10 | 216 | 9.58e-33 | 122 |
| Msa1234170 | AT1G66700.3 | 33.735 | 249 | 140 | 6 | 9 | 246 | 9 | 243 | 6.32e-32 | 120 |
| Msa1234170 | AT1G66690.1 | 31.707 | 287 | 173 | 5 | 9 | 285 | 9 | 282 | 2.79e-31 | 120 |
Find 84 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTATATGTTGTTTATTAA+TGG | 0.128488 | 8_2:+11405717 | Msa1234170:three_prime_UTR |
| TCCTATTTCTTTGGTGTTCC+CGG | 0.206826 | 8_2:+11404767 | Msa1234170:CDS |
| CTGATTTAGTGTTTAATAAT+AGG | 0.218110 | 8_2:-11400959 | None:intergenic |
| GTAAGCCTTGACGACATTTA+AGG | 0.228372 | 8_2:-11405057 | None:intergenic |
| GATGAAAATGATTCTGAAAA+TGG | 0.230412 | 8_2:+11405504 | Msa1234170:CDS |
| ATCAGCAATTGCAAGGCTTC+TGG | 0.239110 | 8_2:-11404534 | None:intergenic |
| ATGGGTCCTTCCTATTTCTT+TGG | 0.247328 | 8_2:+11404758 | Msa1234170:CDS |
| TCATGCAGTTCTTATTATAT+TGG | 0.263360 | 8_2:-11405826 | None:intergenic |
| GGCTACTGCTCTTAATGATA+TGG | 0.272144 | 8_2:+11405229 | Msa1234170:CDS |
| GTATGCTACAGGGGATTATA+AGG | 0.298506 | 8_2:+11405344 | Msa1234170:intron |
| AAGCCTTGCAATTGCTGATC+TGG | 0.312186 | 8_2:+11404538 | Msa1234170:CDS |
| CGATGAAATCAAAACTGAAA+TGG | 0.321132 | 8_2:+11404739 | Msa1234170:CDS |
| CGAAGGTATAGATAACAATA+AGG | 0.328330 | 8_2:+11405007 | Msa1234170:CDS |
| TGGAATATTGTTGCGACGAT+TGG | 0.341844 | 8_2:+11405198 | Msa1234170:CDS |
| AAACAACTCCATGTGATTGA+TGG | 0.354713 | 8_2:-11405455 | None:intergenic |
| CTTATTGTTATCTATACCTT+CGG | 0.355792 | 8_2:-11405006 | None:intergenic |
| TCTTAATGATATGGTGTTGC+AGG | 0.360149 | 8_2:+11405238 | Msa1234170:CDS |
| CAAGTGTCGCGCAAAGGAAT+TGG | 0.382581 | 8_2:+11405115 | Msa1234170:CDS |
| ACCGGGAACACCAAAGAAAT+AGG | 0.383984 | 8_2:-11404768 | None:intergenic |
| AACGGAATTCATTCTCTCCT+TGG | 0.389981 | 8_2:-11405646 | None:intergenic |
| GGAATATTGTTGCGACGATT+GGG | 0.395406 | 8_2:+11405199 | Msa1234170:CDS |
| AACTCTATCATAGAAAGAAC+CGG | 0.395889 | 8_2:-11404786 | None:intergenic |
| TAAGCCTTGACGACATTTAA+GGG | 0.399874 | 8_2:-11405056 | None:intergenic |
| TCAGCAATTGCAAGGCTTCT+GGG | 0.403264 | 8_2:-11404533 | None:intergenic |
| TTTATGTCATTATAGGGAAA+GGG | 0.407033 | 8_2:+11404449 | Msa1234170:intron |
| GAGATGCATATTTCAATTGT+TGG | 0.419986 | 8_2:-11404628 | None:intergenic |
| CAATGATATGGTAACATTAA+CGG | 0.422223 | 8_2:-11405664 | None:intergenic |
| ATTGAAAGTTGTTGTGGTAC+TGG | 0.422598 | 8_2:+11405748 | Msa1234170:three_prime_UTR |
| TCTATCTATGGGTTGATGTA+TGG | 0.426712 | 8_2:+11400936 | None:intergenic |
| GCTGATCTGGGTTGTTCTTG+TGG | 0.438568 | 8_2:+11404551 | Msa1234170:CDS |
| GATGAAATCAAAACTGAAAT+GGG | 0.441523 | 8_2:+11404740 | Msa1234170:CDS |
| GAAAATGGATATGATGTTGC+AGG | 0.441689 | 8_2:+11405519 | Msa1234170:CDS |
| ACTTCCAACTCCACTTCATT+CGG | 0.444785 | 8_2:-11405412 | None:intergenic |
| CGCAAAGGAATTGGTTGAAG+GGG | 0.459467 | 8_2:+11405124 | Msa1234170:CDS |
| TTATTGTTATCTATACCTTC+GGG | 0.460263 | 8_2:-11405005 | None:intergenic |
| AAAGCTAAAAGAAGCAAGAA+TGG | 0.467084 | 8_2:+11400991 | Msa1234170:exon |
| CCTTTGCTAGTTAGTCACTT+TGG | 0.468922 | 8_2:+11405564 | Msa1234170:exon |
| AACACAACAACGCAGACAAT+TGG | 0.469150 | 8_2:-11405869 | None:intergenic |
| GAAGGTATAGATAACAATAA+GGG | 0.479026 | 8_2:+11405008 | Msa1234170:CDS |
| CTCAGAAATCATCATGGTTG+TGG | 0.481895 | 8_2:+11404595 | Msa1234170:CDS |
| AAGGCTTCTGGGAAGTGTGC+TGG | 0.483261 | 8_2:-11404522 | None:intergenic |
| CGCGCAAAGGAATTGGTTGA+AGG | 0.488936 | 8_2:+11405122 | Msa1234170:CDS |
| AAATAAATTGAAAGTTGTTG+TGG | 0.493939 | 8_2:+11405742 | Msa1234170:three_prime_UTR |
| AGCCTTGCAATTGCTGATCT+GGG | 0.503229 | 8_2:+11404539 | Msa1234170:CDS |
| TTATGTCATTATAGGGAAAG+GGG | 0.514791 | 8_2:+11404450 | Msa1234170:intron |
| ACGAAATGCAGACTTCGATC+TGG | 0.517231 | 8_2:-11404812 | None:intergenic |
| CAGTCTTCACTGGCTATCAA+AGG | 0.522423 | 8_2:+11404847 | Msa1234170:CDS |
| GGGAAGATAGTGCACATGAA+TGG | 0.523726 | 8_2:+11401019 | Msa1234170:CDS |
| CAACAATATTCCACGTCACA+TGG | 0.526509 | 8_2:-11405188 | None:intergenic |
| GCTGGTGTAGAGGCTAGTTA+TGG | 0.531599 | 8_2:-11404504 | None:intergenic |
| CGCATGGTTCTAACGATGGT+GGG | 0.533146 | 8_2:+11405149 | Msa1234170:CDS |
| TATGCTACAGGGGATTATAA+GGG | 0.539471 | 8_2:+11405345 | Msa1234170:intron |
| TGGGAAGTGTGCTGGTGTAG+AGG | 0.545856 | 8_2:-11404514 | None:intergenic |
| ACTGCTCTTACAGTCTTCAC+TGG | 0.558182 | 8_2:+11404837 | Msa1234170:CDS |
| TGGTGAAGCTATCATTGAAG+AGG | 0.568437 | 8_2:+11405584 | Msa1234170:three_prime_UTR |
| ATTGATTGATCAAATATCCA+AGG | 0.570539 | 8_2:+11405629 | Msa1234170:three_prime_UTR |
| GCGCAAAGGAATTGGTTGAA+GGG | 0.574318 | 8_2:+11405123 | Msa1234170:CDS |
| AAAAGAAGCAAGAATGGACG+TGG | 0.582211 | 8_2:+11400997 | Msa1234170:exon |
| AACTCCACTTCATTCGGAGA+CGG | 0.584106 | 8_2:-11405406 | None:intergenic |
| GTGCACATGAATGGAGGCGA+TGG | 0.584332 | 8_2:+11401028 | Msa1234170:CDS |
| CAATCAATAATTCCTTGTAA+CGG | 0.589742 | 8_2:-11405614 | None:intergenic |
| CCAAAGTGACTAACTAGCAA+AGG | 0.593693 | 8_2:-11405564 | None:intergenic |
| ATCGTTTGCCATCAATCACA+TGG | 0.595409 | 8_2:+11405447 | Msa1234170:CDS |
| GAGTTGGAAGTTCTCAATGA+AGG | 0.596864 | 8_2:+11405424 | Msa1234170:CDS |
| TTTGACAAAACATATAAGAG+AGG | 0.599734 | 8_2:+11404478 | Msa1234170:CDS |
| TTATCCGTCTCCGAATGAAG+TGG | 0.599970 | 8_2:+11405402 | Msa1234170:CDS |
| AACCCAGATCAGCAATTGCA+AGG | 0.604201 | 8_2:-11404541 | None:intergenic |
| AGTGAAGACTGTAAGAGCAG+TGG | 0.607547 | 8_2:-11404835 | None:intergenic |
| TCGCATGGTTCTAACGATGG+TGG | 0.615198 | 8_2:+11405148 | Msa1234170:CDS |
| GGAACACCAAAGAAATAGGA+AGG | 0.615323 | 8_2:-11404764 | None:intergenic |
| TTGGTGAATTAGGTTCCCGA+AGG | 0.623427 | 8_2:+11404990 | Msa1234170:intron |
| TGCAGGGTGCATCAGAGCTG+TGG | 0.628212 | 8_2:+11405536 | Msa1234170:CDS |
| AAGTCCCTTAAATGTCGTCA+AGG | 0.631557 | 8_2:+11405052 | Msa1234170:CDS |
| AAGATAGTGCACATGAATGG+AGG | 0.632944 | 8_2:+11401022 | Msa1234170:CDS |
| TTCGGAGACGGATAATAGTG+AGG | 0.637717 | 8_2:-11405394 | None:intergenic |
| TCGGAGACGGATAATAGTGA+GGG | 0.639677 | 8_2:-11405393 | None:intergenic |
| AAATGAAGATCCATGTGACG+TGG | 0.640046 | 8_2:+11405178 | Msa1234170:CDS |
| ACTCTATCATAGAAAGAACC+GGG | 0.650635 | 8_2:-11404785 | None:intergenic |
| TGTTGTCTCAGAAATCATCA+TGG | 0.661673 | 8_2:+11404589 | Msa1234170:CDS |
| GGGTCGCATGGTTCTAACGA+TGG | 0.671204 | 8_2:+11405145 | Msa1234170:CDS |
| GCAAAGGAATTGGTTGAAGG+GGG | 0.680145 | 8_2:+11405125 | Msa1234170:CDS |
| AAAGAAGCAAGAATGGACGT+GGG | 0.688725 | 8_2:+11400998 | Msa1234170:exon |
| AAAATGGATATGATGTTGCA+GGG | 0.702180 | 8_2:+11405520 | Msa1234170:CDS |
| AAGAAGCAAGAATGGACGTG+GGG | 0.703619 | 8_2:+11400999 | Msa1234170:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAATAATAATTTTAA+AGG | - | chr8_2:11403626-11403645 | None:intergenic | 0.0% |
| !!! | TGTGATTTTTTTTTTTTTTA+TGG | - | chr8_2:11401396-11401415 | None:intergenic | 10.0% |
| !! | AGATAAAAATAAAGAAAATA+TGG | - | chr8_2:11401531-11401550 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTTGTTAATGT+GGG | - | chr8_2:11401595-11401614 | None:intergenic | 10.0% |
| !!! | TTTTTTTATTTTTGTTAATG+TGG | - | chr8_2:11401596-11401615 | None:intergenic | 10.0% |
| !! | CAAAAATAAAAAAAATTGTA+TGG | + | chr8_2:11401602-11401621 | Msa1234170:intron | 10.0% |
| !! | AAAATAAAAAAAATTGTATG+GGG | + | chr8_2:11401604-11401623 | Msa1234170:intron | 10.0% |
| !!! | TATTTTTGAATAAAAAACAA+AGG | - | chr8_2:11401806-11401825 | None:intergenic | 10.0% |
| !!! | TTTATATAAAATCAATTTTG+TGG | + | chr8_2:11403654-11403673 | Msa1234170:intron | 10.0% |
| !! | AATTTACTTAATTATCAAAA+AGG | - | chr8_2:11403718-11403737 | None:intergenic | 10.0% |
| !! | GCAAAAATTAAATTAAAAAT+AGG | - | chr8_2:11404059-11404078 | None:intergenic | 10.0% |
| !! | ATATTTCATATACAATATTA+AGG | - | chr8_2:11405323-11405342 | None:intergenic | 10.0% |
| !! | AAATAAAAAAAATTGTATGG+GGG | + | chr8_2:11401605-11401624 | Msa1234170:intron | 15.0% |
| !!! | TTCTTTTTTCTTTTTTTTTG+AGG | + | chr8_2:11402171-11402190 | Msa1234170:intron | 15.0% |
| !!! | TCTTTTTTCTTTTTTTTTGA+GGG | + | chr8_2:11402172-11402191 | Msa1234170:intron | 15.0% |
| !!! | TTGAATAACAATTTAGAATA+AGG | - | chr8_2:11403506-11403525 | None:intergenic | 15.0% |
| !!! | GTCTAAAATTAATTTTTTAG+AGG | + | chr8_2:11403784-11403803 | Msa1234170:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr8_2:11404027-11404046 | None:intergenic | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+GGG | + | chr8_2:11404341-11404360 | Msa1234170:intron | 15.0% |
| !!! | GAAAAGTTGATATATTTATA+GGG | + | chr8_2:11404401-11404420 | Msa1234170:intron | 15.0% |
| !! | CTATAATGACATAAAAATAA+GGG | - | chr8_2:11404444-11404463 | None:intergenic | 15.0% |
| !!! | CTTATTTTTATGTCATTATA+GGG | + | chr8_2:11404443-11404462 | Msa1234170:intron | 15.0% |
| !!! | CTAATTGATTTTTATTTGTT+TGG | + | chr8_2:11404971-11404990 | Msa1234170:intron | 15.0% |
| !!! | ATATAACTCATTTTTCATAT+AGG | - | chr8_2:11405279-11405298 | None:intergenic | 15.0% |
| !! | ATATGAAAAATGAGTTATAT+AGG | + | chr8_2:11405279-11405298 | Msa1234170:intron | 15.0% |
| !!! | CATTATATGTTGTTTATTAA+TGG | + | chr8_2:11405717-11405736 | Msa1234170:three_prime_UTR | 15.0% |
| !! | CTGATTTAGTGTTTAATAAT+AGG | - | chr8_2:11400962-11400981 | None:intergenic | 20.0% |
| !!! | AAATGTTATTTATGCTATGT+TGG | - | chr8_2:11401275-11401294 | None:intergenic | 20.0% |
| !! | ATAAAAAGAATCACACATTT+GGG | - | chr8_2:11401739-11401758 | None:intergenic | 20.0% |
| !! | ATAAGTTATCTAATATGGAA+TGG | - | chr8_2:11401848-11401867 | None:intergenic | 20.0% |
| !! | GTCAAATAAGTTATCTAATA+TGG | - | chr8_2:11401853-11401872 | None:intergenic | 20.0% |
| !!! | ATAAATTTTCACCAACTTTT+TGG | - | chr8_2:11402119-11402138 | None:intergenic | 20.0% |
| !! | TCAAAAAGTTATCAAACAAA+TGG | + | chr8_2:11402413-11402432 | Msa1234170:intron | 20.0% |
| !!! | TCTCAAATTGCTTAATTTTT+CGG | + | chr8_2:11402550-11402569 | Msa1234170:intron | 20.0% |
| !!! | CAAATGATTAAATTTTGCAA+TGG | + | chr8_2:11402996-11403015 | Msa1234170:intron | 20.0% |
| !!! | CCACATTAAATTTTTTCTTT+AGG | - | chr8_2:11403603-11403622 | None:intergenic | 20.0% |
| !! | CCTAAAGAAAAAATTTAATG+TGG | + | chr8_2:11403600-11403619 | Msa1234170:intron | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | + | chr8_2:11403940-11403959 | Msa1234170:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr8_2:11403967-11403986 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr8_2:11404028-11404047 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr8_2:11404031-11404050 | Msa1234170:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr8_2:11404309-11404328 | Msa1234170:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr8_2:11404310-11404329 | Msa1234170:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | chr8_2:11404337-11404356 | None:intergenic | 20.0% |
| !!! | GTGAAGATTGAAAATTTTAT+AGG | + | chr8_2:11404340-11404359 | Msa1234170:intron | 20.0% |
| !!! | CGAAAAGTTGATATATTTAT+AGG | + | chr8_2:11404400-11404419 | Msa1234170:intron | 20.0% |
| !!! | ATAAGGGTTAAATATGTTTT+TGG | - | chr8_2:11404428-11404447 | None:intergenic | 20.0% |
| !! | CCTATAATGACATAAAAATA+AGG | - | chr8_2:11404445-11404464 | None:intergenic | 20.0% |
| !!! | CCTTATTTTTATGTCATTAT+AGG | + | chr8_2:11404442-11404461 | Msa1234170:intron | 20.0% |
| !! | TTAAAAAAGATCTTGTATTC+GGG | - | chr8_2:11404653-11404672 | None:intergenic | 20.0% |
| !! | GTTAAAAAAGATCTTGTATT+CGG | - | chr8_2:11404654-11404673 | None:intergenic | 20.0% |
| !!! | TTTTATTTGTTTGGTGAATT+AGG | + | chr8_2:11404980-11404999 | Msa1234170:intron | 20.0% |
| !! | AAATAAATTGAAAGTTGTTG+TGG | + | chr8_2:11405742-11405761 | Msa1234170:three_prime_UTR | 20.0% |
| ! | ACAAAAGTTTGAAAGTTTAC+AGG | - | chr8_2:11401364-11401383 | None:intergenic | 25.0% |
| ! | AAAAACCATTAAAACATCTG+TGG | + | chr8_2:11401660-11401679 | Msa1234170:intron | 25.0% |
| ! | CATAAAAAGAATCACACATT+TGG | - | chr8_2:11401740-11401759 | None:intergenic | 25.0% |
| !! | CAAATGTGTGATTCTTTTTA+TGG | + | chr8_2:11401738-11401757 | Msa1234170:intron | 25.0% |
| ! | AAATATGATCAAAGTTTGTC+AGG | - | chr8_2:11401891-11401910 | None:intergenic | 25.0% |
| !!! | TCAATTGTGTCACTTAATAT+GGG | + | chr8_2:11402065-11402084 | Msa1234170:intron | 25.0% |
| ! | AAAAAAAGAATTGCTAAGTG+GGG | - | chr8_2:11402153-11402172 | None:intergenic | 25.0% |
| ! | GAAAAAAAGAATTGCTAAGT+GGG | - | chr8_2:11402154-11402173 | None:intergenic | 25.0% |
| ! | AGAAAAAAAGAATTGCTAAG+TGG | - | chr8_2:11402155-11402174 | None:intergenic | 25.0% |
| ! | GATGTCACAAAAATTATTGA+TGG | - | chr8_2:11402290-11402309 | None:intergenic | 25.0% |
| !! | CTCAAATTGCTTAATTTTTC+GGG | + | chr8_2:11402551-11402570 | Msa1234170:intron | 25.0% |
| !! | TTTAGAATCACAAATCTACT+TGG | + | chr8_2:11402720-11402739 | Msa1234170:intron | 25.0% |
| !! | ATGATTAAATTTTGCAATGG+CGG | + | chr8_2:11402999-11403018 | Msa1234170:intron | 25.0% |
| !! | AATAGGGATCATTTGAATTT+TGG | - | chr8_2:11403051-11403070 | None:intergenic | 25.0% |
| !!! | TATGTTTAGTTCTGCAAATA+GGG | - | chr8_2:11403067-11403086 | None:intergenic | 25.0% |
| !!! | ATATGTTTAGTTCTGCAAAT+AGG | - | chr8_2:11403068-11403087 | None:intergenic | 25.0% |
| ! | TGATGCAATCATTAATATGT+TGG | - | chr8_2:11403556-11403575 | None:intergenic | 25.0% |
| ! | AACATATTAATGATTGCATC+AGG | + | chr8_2:11403555-11403574 | Msa1234170:intron | 25.0% |
| ! | ACATATTAATGATTGCATCA+GGG | + | chr8_2:11403556-11403575 | Msa1234170:intron | 25.0% |
| !!! | GTTTTTAGCCTCAAAATTTT+GGG | - | chr8_2:11403822-11403841 | None:intergenic | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr8_2:11403968-11403987 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr8_2:11403998-11404017 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr8_2:11403999-11404018 | None:intergenic | 25.0% |
| !! | TTTTATGTCATTATAGGGAA+AGG | + | chr8_2:11404448-11404467 | Msa1234170:intron | 25.0% |
| ! | TTTATGTCATTATAGGGAAA+GGG | + | chr8_2:11404449-11404468 | Msa1234170:intron | 25.0% |
| ! | TTTGACAAAACATATAAGAG+AGG | + | chr8_2:11404478-11404497 | Msa1234170:CDS | 25.0% |
| !!! | GATCTTTTTTAACGATCTTT+CGG | + | chr8_2:11404661-11404680 | Msa1234170:CDS | 25.0% |
| !!! | ATCTTTTTTAACGATCTTTC+GGG | + | chr8_2:11404662-11404681 | Msa1234170:CDS | 25.0% |
| ! | GATGAAATCAAAACTGAAAT+GGG | + | chr8_2:11404740-11404759 | Msa1234170:CDS | 25.0% |
| ! | TTATTGTTATCTATACCTTC+GGG | - | chr8_2:11405008-11405027 | None:intergenic | 25.0% |
| ! | CTTATTGTTATCTATACCTT+CGG | - | chr8_2:11405009-11405028 | None:intergenic | 25.0% |
| !! | GAAGGTATAGATAACAATAA+GGG | + | chr8_2:11405008-11405027 | Msa1234170:CDS | 25.0% |
| ! | TATGAAATATTGTATGCTAC+AGG | + | chr8_2:11405333-11405352 | Msa1234170:intron | 25.0% |
| ! | ATGAAATATTGTATGCTACA+GGG | + | chr8_2:11405334-11405353 | Msa1234170:intron | 25.0% |
| !! | GATGAAAATGATTCTGAAAA+TGG | + | chr8_2:11405504-11405523 | Msa1234170:CDS | 25.0% |
| ! | CAATCAATAATTCCTTGTAA+CGG | - | chr8_2:11405617-11405636 | None:intergenic | 25.0% |
| ! | ATTGATTGATCAAATATCCA+AGG | + | chr8_2:11405629-11405648 | Msa1234170:three_prime_UTR | 25.0% |
| ! | CAATGATATGGTAACATTAA+CGG | - | chr8_2:11405667-11405686 | None:intergenic | 25.0% |
| !!! | TGATTTTCTAGTCAATGATA+TGG | - | chr8_2:11405679-11405698 | None:intergenic | 25.0% |
| ! | TCATGCAGTTCTTATTATAT+TGG | - | chr8_2:11405829-11405848 | None:intergenic | 25.0% |
| AAAGCTAAAAGAAGCAAGAA+TGG | + | chr8_2:11400991-11401010 | Msa1234170:exon | 30.0% | |
| CACATATACAGATTAGATCT+CGG | + | chr8_2:11401092-11401111 | Msa1234170:intron | 30.0% | |
| !! | AATCACCACAGATGTTTTAA+TGG | - | chr8_2:11401668-11401687 | None:intergenic | 30.0% |
| GTTATCTAATATGGAATGGT+GGG | - | chr8_2:11401844-11401863 | None:intergenic | 30.0% | |
| AGTTATCTAATATGGAATGG+TGG | - | chr8_2:11401845-11401864 | None:intergenic | 30.0% | |
| !! | GTCAATTGTGTCACTTAATA+TGG | + | chr8_2:11402064-11402083 | Msa1234170:intron | 30.0% |
| !! | ATTTTCACCAACTTTTTGGT+AGG | - | chr8_2:11402115-11402134 | None:intergenic | 30.0% |
| TGATGCATCATATTGTTAAC+CGG | + | chr8_2:11402224-11402243 | Msa1234170:intron | 30.0% | |
| AAATAACACACCAGAGAAAT+TGG | + | chr8_2:11402442-11402461 | Msa1234170:intron | 30.0% | |
| GTCGGTTATAAATTGTAAAC+TGG | + | chr8_2:11402472-11402491 | Msa1234170:intron | 30.0% | |
| GGATGTCTAAATGTATTTGA+TGG | + | chr8_2:11402579-11402598 | Msa1234170:intron | 30.0% | |
| AGAAGAGATTGAATTAGGTT+TGG | + | chr8_2:11402801-11402820 | Msa1234170:intron | 30.0% | |
| GAAGAGATTGAATTAGGTTT+GGG | + | chr8_2:11402802-11402821 | Msa1234170:intron | 30.0% | |
| !! | TAGGTTTGGGTTTTTAAAGA+AGG | + | chr8_2:11402815-11402834 | Msa1234170:intron | 30.0% |
| !! | AGGTTTGGGTTTTTAAAGAA+GGG | + | chr8_2:11402816-11402835 | Msa1234170:intron | 30.0% |
| !!! | GTTTTTAAAGAAGGGCATTT+TGG | + | chr8_2:11402824-11402843 | Msa1234170:intron | 30.0% |
| TGCACTAATTAGGAATAAGT+TGG | + | chr8_2:11403298-11403317 | Msa1234170:intron | 30.0% | |
| ! | CACAAGATTTACTTGTTAGT+CGG | + | chr8_2:11403361-11403380 | Msa1234170:intron | 30.0% |
| ! | ACAAGATTTACTTGTTAGTC+GGG | + | chr8_2:11403362-11403381 | Msa1234170:intron | 30.0% |
| GGATTTATGCTAACTAACTA+AGG | - | chr8_2:11403391-11403410 | None:intergenic | 30.0% | |
| ACACAATTCTATGTATAGAG+AGG | - | chr8_2:11403412-11403431 | None:intergenic | 30.0% | |
| TGTATTGAATAGAGAAGATG+TGG | - | chr8_2:11403454-11403473 | None:intergenic | 30.0% | |
| ! | TTTTTCCACCCAAAATTTTG+AGG | + | chr8_2:11403811-11403830 | Msa1234170:intron | 30.0% |
| !!! | GGTTTTTAGCCTCAAAATTT+TGG | - | chr8_2:11403823-11403842 | None:intergenic | 30.0% |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr8_2:11404356-11404375 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr8_2:11404356-11404375 | Msa1234170:intron | 30.0% | |
| TATAGGGACTAAAAGTTGAA+GGG | + | chr8_2:11404357-11404376 | Msa1234170:intron | 30.0% | |
| ! | AAGTTGAAGGGAAATTTTAG+AGG | + | chr8_2:11404369-11404388 | Msa1234170:intron | 30.0% |
| ! | AGTTGAAGGGAAATTTTAGA+GGG | + | chr8_2:11404370-11404389 | Msa1234170:intron | 30.0% |
| TTATGTCATTATAGGGAAAG+GGG | + | chr8_2:11404450-11404469 | Msa1234170:intron | 30.0% | |
| GAGATGCATATTTCAATTGT+TGG | - | chr8_2:11404631-11404650 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTAACGATCTTTCG+GGG | + | chr8_2:11404663-11404682 | Msa1234170:CDS | 30.0% |
| CGATGAAATCAAAACTGAAA+TGG | + | chr8_2:11404739-11404758 | Msa1234170:CDS | 30.0% | |
| AACTCTATCATAGAAAGAAC+CGG | - | chr8_2:11404789-11404808 | None:intergenic | 30.0% | |
| ! | CGAAGGTATAGATAACAATA+AGG | + | chr8_2:11405007-11405026 | Msa1234170:CDS | 30.0% |
| TGAAATATTGTATGCTACAG+GGG | + | chr8_2:11405335-11405354 | Msa1234170:intron | 30.0% | |
| AAAATGGATATGATGTTGCA+GGG | + | chr8_2:11405520-11405539 | Msa1234170:CDS | 30.0% | |
| !! | TGCAAACAACTCATTTTTCC+AGG | + | chr8_2:11401063-11401082 | Msa1234170:CDS | 35.0% |
| ! | TCGGTTGACTCTATATAGAT+CGG | + | chr8_2:11401111-11401130 | Msa1234170:intron | 35.0% |
| ATTGATGTTATCACCAAGCT+TGG | + | chr8_2:11401136-11401155 | Msa1234170:intron | 35.0% | |
| TTGATGTTATCACCAAGCTT+GGG | + | chr8_2:11401137-11401156 | Msa1234170:intron | 35.0% | |
| TTCTGGTGACTATATAGTCA+TGG | + | chr8_2:11401162-11401181 | Msa1234170:intron | 35.0% | |
| TCTCAATGTTTCATAGCCAT+AGG | - | chr8_2:11401206-11401225 | None:intergenic | 35.0% | |
| TTTGAAAGTTTACAGGAACG+AGG | - | chr8_2:11401357-11401376 | None:intergenic | 35.0% | |
| ! | TCATCCCAAGACCTAATTTT+TGG | + | chr8_2:11402256-11402275 | Msa1234170:intron | 35.0% |
| CACTCCAAAAATTAGGTCTT+GGG | - | chr8_2:11402263-11402282 | None:intergenic | 35.0% | |
| TCACTCCAAAAATTAGGTCT+TGG | - | chr8_2:11402264-11402283 | None:intergenic | 35.0% | |
| TGGATCTCACTCCAAAAATT+AGG | - | chr8_2:11402270-11402289 | None:intergenic | 35.0% | |
| AGAGAAATTGGAATCAGAGT+CGG | + | chr8_2:11402454-11402473 | Msa1234170:intron | 35.0% | |
| TACTATATTCACGTCTATCG+CGG | - | chr8_2:11402514-11402533 | None:intergenic | 35.0% | |
| !!! | TGCTTAATTTTTCGGGTTGT+TGG | + | chr8_2:11402558-11402577 | Msa1234170:intron | 35.0% |
| !! | TTTGGGTTGGTCTTTGTATT+TGG | + | chr8_2:11402752-11402771 | Msa1234170:intron | 35.0% |
| !! | TTGGGTTGGTCTTTGTATTT+GGG | + | chr8_2:11402753-11402772 | Msa1234170:intron | 35.0% |
| GGAGAAGAAGAGATTGAATT+AGG | + | chr8_2:11402796-11402815 | Msa1234170:intron | 35.0% | |
| ! | GCAGTAATTAACTTGGTTGA+AGG | + | chr8_2:11402964-11402983 | Msa1234170:intron | 35.0% |
| ACTAATCTTTAGTGATCCTC+TGG | - | chr8_2:11403255-11403274 | None:intergenic | 35.0% | |
| ! | CTAGCTAGTTTGCACTAATT+AGG | + | chr8_2:11403288-11403307 | Msa1234170:intron | 35.0% |
| ATTAATGATTGCATCAGGGA+CGG | + | chr8_2:11403560-11403579 | Msa1234170:intron | 35.0% | |
| TTTAGGCCTCTTAATCTGTT+GGG | - | chr8_2:11403586-11403605 | None:intergenic | 35.0% | |
| TTCGTGACTTAGAGTAATTG+AGG | + | chr8_2:11403692-11403711 | Msa1234170:intron | 35.0% | |
| ! | TTTAGCCTCAAAATTTTGGG+TGG | - | chr8_2:11403819-11403838 | None:intergenic | 35.0% |
| !!! | CTTTTTTCCAATGCAATCCA+GGG | - | chr8_2:11403876-11403895 | None:intergenic | 35.0% |
| !!! | TCTTTTTTCCAATGCAATCC+AGG | - | chr8_2:11403877-11403896 | None:intergenic | 35.0% |
| TGTTGTCTCAGAAATCATCA+TGG | + | chr8_2:11404589-11404608 | Msa1234170:CDS | 35.0% | |
| ACTCTATCATAGAAAGAACC+GGG | - | chr8_2:11404788-11404807 | None:intergenic | 35.0% | |
| TAAGCCTTGACGACATTTAA+GGG | - | chr8_2:11405059-11405078 | None:intergenic | 35.0% | |
| !! | TCTTAATGATATGGTGTTGC+AGG | + | chr8_2:11405238-11405257 | Msa1234170:CDS | 35.0% |
| TATGCTACAGGGGATTATAA+GGG | + | chr8_2:11405345-11405364 | Msa1234170:intron | 35.0% | |
| AAACAACTCCATGTGATTGA+TGG | - | chr8_2:11405458-11405477 | None:intergenic | 35.0% | |
| GAAAATGGATATGATGTTGC+AGG | + | chr8_2:11405519-11405538 | Msa1234170:CDS | 35.0% | |
| ATTGAAAGTTGTTGTGGTAC+TGG | + | chr8_2:11405748-11405767 | Msa1234170:three_prime_UTR | 35.0% | |
| AAAAGAAGCAAGAATGGACG+TGG | + | chr8_2:11400997-11401016 | Msa1234170:exon | 40.0% | |
| AAAGAAGCAAGAATGGACGT+GGG | + | chr8_2:11400998-11401017 | Msa1234170:exon | 40.0% | |
| AAGATAGTGCACATGAATGG+AGG | + | chr8_2:11401022-11401041 | Msa1234170:CDS | 40.0% | |
| ! | CGGTTGACTCTATATAGATC+GGG | + | chr8_2:11401112-11401131 | Msa1234170:intron | 40.0% |
| TGGTGACTATATAGTCATGG+TGG | + | chr8_2:11401165-11401184 | Msa1234170:intron | 40.0% | |
| GCGTCGCAAGATAAATTTGT+TGG | + | chr8_2:11401712-11401731 | Msa1234170:intron | 40.0% | |
| ! | TGTCACTTAATATGGGACGT+GGG | + | chr8_2:11402072-11402091 | Msa1234170:intron | 40.0% |
| GACGTGGGAGTAATTCTTAT+AGG | + | chr8_2:11402087-11402106 | Msa1234170:intron | 40.0% | |
| ATAGGAGCCTACCAAAAAGT+TGG | + | chr8_2:11402105-11402124 | Msa1234170:intron | 40.0% | |
| GACTCTGATTCCAATTTCTC+TGG | - | chr8_2:11402455-11402474 | None:intergenic | 40.0% | |
| ACTATATTCACGTCTATCGC+GGG | - | chr8_2:11402513-11402532 | None:intergenic | 40.0% | |
| TCTACTTGGTTATTGCGCTT+TGG | + | chr8_2:11402734-11402753 | Msa1234170:intron | 40.0% | |
| CTACTTGGTTATTGCGCTTT+GGG | + | chr8_2:11402735-11402754 | Msa1234170:intron | 40.0% | |
| ATTCAATCTCTTCTTCTCCC+AGG | - | chr8_2:11402795-11402814 | None:intergenic | 40.0% | |
| ! | GCTTTTGCCTTAAAGTCCTA+GGG | + | chr8_2:11402854-11402873 | Msa1234170:intron | 40.0% |
| ! | CTTTTGCCTTAAAGTCCTAG+GGG | + | chr8_2:11402855-11402874 | Msa1234170:intron | 40.0% |
| AAAATGCCCCTAGGACTTTA+AGG | - | chr8_2:11402864-11402883 | None:intergenic | 40.0% | |
| TGCTGAGTCACCAAAAGAAT+GGG | - | chr8_2:11402897-11402916 | None:intergenic | 40.0% | |
| TTGCTGAGTCACCAAAAGAA+TGG | - | chr8_2:11402898-11402917 | None:intergenic | 40.0% | |
| TGACGTGGCAGTAATTAACT+TGG | + | chr8_2:11402957-11402976 | Msa1234170:intron | 40.0% | |
| AAGTGCACAAAGCAACTAAG+AGG | - | chr8_2:11403220-11403239 | None:intergenic | 40.0% | |
| GTGGAGATATCAAAACGCAA+GGG | - | chr8_2:11403435-11403454 | None:intergenic | 40.0% | |
| TGTGGAGATATCAAAACGCA+AGG | - | chr8_2:11403436-11403455 | None:intergenic | 40.0% | |
| CTTTAGGCCTCTTAATCTGT+TGG | - | chr8_2:11403587-11403606 | None:intergenic | 40.0% | |
| TGAGGCTAAAAACCCTTGTT+TGG | + | chr8_2:11403829-11403848 | Msa1234170:intron | 40.0% | |
| ! | GAGGCTAAAAACCCTTGTTT+GGG | + | chr8_2:11403830-11403849 | Msa1234170:intron | 40.0% |
| !! | AAACCCTTGTTTGGGTTGTT+TGG | + | chr8_2:11403838-11403857 | Msa1234170:intron | 40.0% |
| CTCAGAAATCATCATGGTTG+TGG | + | chr8_2:11404595-11404614 | Msa1234170:CDS | 40.0% | |
| ! | ATGGGTCCTTCCTATTTCTT+TGG | + | chr8_2:11404758-11404777 | Msa1234170:CDS | 40.0% |
| GGAACACCAAAGAAATAGGA+AGG | - | chr8_2:11404767-11404786 | None:intergenic | 40.0% | |
| !! | TCCTATTTCTTTGGTGTTCC+CGG | + | chr8_2:11404767-11404786 | Msa1234170:CDS | 40.0% |
| AAGTCCCTTAAATGTCGTCA+AGG | + | chr8_2:11405052-11405071 | Msa1234170:CDS | 40.0% | |
| GTAAGCCTTGACGACATTTA+AGG | - | chr8_2:11405060-11405079 | None:intergenic | 40.0% | |
| AAATGAAGATCCATGTGACG+TGG | + | chr8_2:11405178-11405197 | Msa1234170:CDS | 40.0% | |
| CAACAATATTCCACGTCACA+TGG | - | chr8_2:11405191-11405210 | None:intergenic | 40.0% | |
| TGGAATATTGTTGCGACGAT+TGG | + | chr8_2:11405198-11405217 | Msa1234170:CDS | 40.0% | |
| GGAATATTGTTGCGACGATT+GGG | + | chr8_2:11405199-11405218 | Msa1234170:CDS | 40.0% | |
| !!! | TTGCGACGATTGGGATTTTT+TGG | + | chr8_2:11405208-11405227 | Msa1234170:CDS | 40.0% |
| GGCTACTGCTCTTAATGATA+TGG | + | chr8_2:11405229-11405248 | Msa1234170:CDS | 40.0% | |
| GTATGCTACAGGGGATTATA+AGG | + | chr8_2:11405344-11405363 | Msa1234170:intron | 40.0% | |
| ACTTCCAACTCCACTTCATT+CGG | - | chr8_2:11405415-11405434 | None:intergenic | 40.0% | |
| GAGTTGGAAGTTCTCAATGA+AGG | + | chr8_2:11405424-11405443 | Msa1234170:CDS | 40.0% | |
| ATCGTTTGCCATCAATCACA+TGG | + | chr8_2:11405447-11405466 | Msa1234170:CDS | 40.0% | |
| CCAAAGTGACTAACTAGCAA+AGG | - | chr8_2:11405567-11405586 | None:intergenic | 40.0% | |
| CCTTTGCTAGTTAGTCACTT+TGG | + | chr8_2:11405564-11405583 | Msa1234170:exon | 40.0% | |
| TGGTGAAGCTATCATTGAAG+AGG | + | chr8_2:11405584-11405603 | Msa1234170:three_prime_UTR | 40.0% | |
| !!! | AGAGGTTTTTAGCCGTTACA+AGG | + | chr8_2:11405602-11405621 | Msa1234170:three_prime_UTR | 40.0% |
| AACGGAATTCATTCTCTCCT+TGG | - | chr8_2:11405649-11405668 | None:intergenic | 40.0% | |
| AACACAACAACGCAGACAAT+TGG | - | chr8_2:11405872-11405891 | None:intergenic | 40.0% | |
| AAGAAGCAAGAATGGACGTG+GGG | + | chr8_2:11400999-11401018 | Msa1234170:exon | 45.0% | |
| GGGAAGATAGTGCACATGAA+TGG | + | chr8_2:11401019-11401038 | Msa1234170:CDS | 45.0% | |
| TCTGTATATGTGTGCGTACC+TGG | - | chr8_2:11401084-11401103 | None:intergenic | 45.0% | |
| ! | ATCACCAAGCTTGGGTTTTC+TGG | + | chr8_2:11401145-11401164 | Msa1234170:intron | 45.0% |
| GTGACTTTAGCATCTGCCTA+TGG | + | chr8_2:11401187-11401206 | Msa1234170:intron | 45.0% | |
| !! | GTGTCACTTAATATGGGACG+TGG | + | chr8_2:11402071-11402090 | Msa1234170:intron | 45.0% |
| !! | CTTGGGATGACTTCTAAGAC+CGG | - | chr8_2:11402246-11402265 | None:intergenic | 45.0% |
| ! | TTGGTTATTGCGCTTTGGGT+TGG | + | chr8_2:11402739-11402758 | Msa1234170:intron | 45.0% |
| GAGTGAGATCGATGATTCCT+GGG | + | chr8_2:11402775-11402794 | Msa1234170:intron | 45.0% | |
| ! | CGCTTTTGCCTTAAAGTCCT+AGG | + | chr8_2:11402853-11402872 | Msa1234170:intron | 45.0% |
| ! | CGTCAGTCTACCCATTCTTT+TGG | + | chr8_2:11402884-11402903 | Msa1234170:intron | 45.0% |
| ACTTCCAATGATCACTCCAG+AGG | + | chr8_2:11403236-11403255 | Msa1234170:intron | 45.0% | |
| !! | TGATCCTCTGGAGTGATCAT+TGG | - | chr8_2:11403243-11403262 | None:intergenic | 45.0% |
| TCAGCAATTGCAAGGCTTCT+GGG | - | chr8_2:11404536-11404555 | None:intergenic | 45.0% | |
| ATCAGCAATTGCAAGGCTTC+TGG | - | chr8_2:11404537-11404556 | None:intergenic | 45.0% | |
| AAGCCTTGCAATTGCTGATC+TGG | + | chr8_2:11404538-11404557 | Msa1234170:CDS | 45.0% | |
| AGCCTTGCAATTGCTGATCT+GGG | + | chr8_2:11404539-11404558 | Msa1234170:CDS | 45.0% | |
| AACCCAGATCAGCAATTGCA+AGG | - | chr8_2:11404544-11404563 | None:intergenic | 45.0% | |
| ACCGGGAACACCAAAGAAAT+AGG | - | chr8_2:11404771-11404790 | None:intergenic | 45.0% | |
| ACGAAATGCAGACTTCGATC+TGG | - | chr8_2:11404815-11404834 | None:intergenic | 45.0% | |
| AGTGAAGACTGTAAGAGCAG+TGG | - | chr8_2:11404838-11404857 | None:intergenic | 45.0% | |
| ACTGCTCTTACAGTCTTCAC+TGG | + | chr8_2:11404837-11404856 | Msa1234170:CDS | 45.0% | |
| ! | CAGTCTTCACTGGCTATCAA+AGG | + | chr8_2:11404847-11404866 | Msa1234170:CDS | 45.0% |
| TTGGTGAATTAGGTTCCCGA+AGG | + | chr8_2:11404990-11405009 | Msa1234170:intron | 45.0% | |
| !! | TTTTCTCAAGTGTCGCGCAA+AGG | + | chr8_2:11405109-11405128 | Msa1234170:CDS | 45.0% |
| GCGCAAAGGAATTGGTTGAA+GGG | + | chr8_2:11405123-11405142 | Msa1234170:CDS | 45.0% | |
| CGCAAAGGAATTGGTTGAAG+GGG | + | chr8_2:11405124-11405143 | Msa1234170:CDS | 45.0% | |
| GCAAAGGAATTGGTTGAAGG+GGG | + | chr8_2:11405125-11405144 | Msa1234170:CDS | 45.0% | |
| TCGGAGACGGATAATAGTGA+GGG | - | chr8_2:11405396-11405415 | None:intergenic | 45.0% | |
| TTCGGAGACGGATAATAGTG+AGG | - | chr8_2:11405397-11405416 | None:intergenic | 45.0% | |
| TTATCCGTCTCCGAATGAAG+TGG | + | chr8_2:11405402-11405421 | Msa1234170:CDS | 45.0% | |
| AACTCCACTTCATTCGGAGA+CGG | - | chr8_2:11405409-11405428 | None:intergenic | 45.0% | |
| !! | CAAAAAAAAAAAAAAAAAAA+AGG | - | chr8_2:11401321-11401340 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+AGG | + | chr8_2:11401321-11401340 | Msa1234170:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+GGG | + | chr8_2:11401322-11401341 | Msa1234170:intron | 5.0% |
| !! | AAAAATAAAAAAAATTGTAT+GGG | + | chr8_2:11401603-11401622 | Msa1234170:intron | 5.0% |
| !! | ATTTACAAAAAAAAAAAAAA+AGG | - | chr8_2:11402383-11402402 | None:intergenic | 5.0% |
| !! | AAAAATAAAATATTTATCAT+CGG | - | chr8_2:11403923-11403942 | None:intergenic | 5.0% |
| !!! | ATGATAAATATTTTATTTTT+AGG | + | chr8_2:11403923-11403942 | Msa1234170:intron | 5.0% |
| !!! | TGATAAATATTTTATTTTTA+GGG | + | chr8_2:11403924-11403943 | Msa1234170:intron | 5.0% |
| !! | CAAAAATTAAATTAAAAATA+GGG | - | chr8_2:11404058-11404077 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+AGG | - | chr8_2:11404132-11404151 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | - | chr8_2:11404186-11404205 | None:intergenic | 5.0% |
| GTCACCAGAAAACCCAAGCT+TGG | - | chr8_2:11401152-11401171 | None:intergenic | 50.0% | |
| GGAGTGAGATCGATGATTCC+TGG | + | chr8_2:11402774-11402793 | Msa1234170:intron | 50.0% | |
| AGACTGACGAAAATGCCCCT+AGG | - | chr8_2:11402873-11402892 | None:intergenic | 50.0% | |
| !! | GCTGAGGTGTCACTGATGAT+TGG | - | chr8_2:11402930-11402949 | None:intergenic | 50.0% |
| ACCTCAGCTGATTACTGACG+TGG | + | chr8_2:11402942-11402961 | Msa1234170:intron | 50.0% | |
| GGGCCAAACAACCCAAACAA+GGG | - | chr8_2:11403844-11403863 | None:intergenic | 50.0% | |
| AGGGCCAAACAACCCAAACA+AGG | - | chr8_2:11403845-11403864 | None:intergenic | 50.0% | |
| !! | GTTTGGGTTGTTTGGCCCTT+AGG | + | chr8_2:11403846-11403865 | Msa1234170:intron | 50.0% |
| TTTCCAATGCAATCCAGGGC+CGG | - | chr8_2:11403872-11403891 | None:intergenic | 50.0% | |
| ! | GCTGGTGTAGAGGCTAGTTA+TGG | - | chr8_2:11404507-11404526 | None:intergenic | 50.0% |
| GCTGATCTGGGTTGTTCTTG+TGG | + | chr8_2:11404551-11404570 | Msa1234170:CDS | 50.0% | |
| ! | CAAGTGTCGCGCAAAGGAAT+TGG | + | chr8_2:11405115-11405134 | Msa1234170:CDS | 50.0% |
| CGCGCAAAGGAATTGGTTGA+AGG | + | chr8_2:11405122-11405141 | Msa1234170:CDS | 50.0% | |
| !! | TCGCATGGTTCTAACGATGG+TGG | + | chr8_2:11405148-11405167 | Msa1234170:CDS | 50.0% |
| !! | CGCATGGTTCTAACGATGGT+GGG | + | chr8_2:11405149-11405168 | Msa1234170:CDS | 50.0% |
| GTCTCCGAATGAAGTGGAGT+TGG | + | chr8_2:11405408-11405427 | Msa1234170:CDS | 50.0% | |
| GTGCACATGAATGGAGGCGA+TGG | + | chr8_2:11401028-11401047 | Msa1234170:CDS | 55.0% | |
| GCCACGTCAGTAATCAGCTG+AGG | - | chr8_2:11402946-11402965 | None:intergenic | 55.0% | |
| GGACGGCCCAACAGATTAAG+AGG | + | chr8_2:11403577-11403596 | Msa1234170:intron | 55.0% | |
| ! | TGGGAAGTGTGCTGGTGTAG+AGG | - | chr8_2:11404517-11404536 | None:intergenic | 55.0% |
| ! | AAGGCTTCTGGGAAGTGTGC+TGG | - | chr8_2:11404525-11404544 | None:intergenic | 55.0% |
| ATTGGTTGAAGGGGGTCGCA+TGG | + | chr8_2:11405133-11405152 | Msa1234170:CDS | 55.0% | |
| !! | GGGTCGCATGGTTCTAACGA+TGG | + | chr8_2:11405145-11405164 | Msa1234170:CDS | 55.0% |
| GGGTTGTTTGGCCCTTAGGC+CGG | + | chr8_2:11403850-11403869 | Msa1234170:intron | 60.0% | |
| TGCAGGGTGCATCAGAGCTG+TGG | + | chr8_2:11405536-11405555 | Msa1234170:CDS | 60.0% | |
| GCAATCCAGGGCCGGCCTAA+GGG | - | chr8_2:11403864-11403883 | None:intergenic | 65.0% | |
| TGCAATCCAGGGCCGGCCTA+AGG | - | chr8_2:11403865-11403884 | None:intergenic | 65.0% | |
| AGGCCGGCCCTGGATTGCAT+TGG | + | chr8_2:11403866-11403885 | Msa1234170:intron | 65.0% | |
| TTTGGCCCTTAGGCCGGCCC+TGG | + | chr8_2:11403856-11403875 | Msa1234170:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 11400944 | 11405914 | 11400944 | ID=Msa1234170;Name=Msa1234170 |
| chr8_2 | mRNA | 11400944 | 11405914 | 11400944 | ID=Msa1234170-mRNA-1;Parent=Msa1234170;Name=Msa1234170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=66|1|1|1|1|1|4|341|318 |
| chr8_2 | exon | 11400944 | 11401084 | 11400944 | ID=Msa1234170-mRNA-1:exon:4428;Parent=Msa1234170-mRNA-1 |
| chr8_2 | exon | 11404464 | 11404868 | 11404464 | ID=Msa1234170-mRNA-1:exon:4429;Parent=Msa1234170-mRNA-1 |
| chr8_2 | exon | 11405002 | 11405259 | 11405002 | ID=Msa1234170-mRNA-1:exon:4430;Parent=Msa1234170-mRNA-1 |
| chr8_2 | exon | 11405355 | 11405914 | 11405355 | ID=Msa1234170-mRNA-1:exon:4431;Parent=Msa1234170-mRNA-1 |
| chr8_2 | five_prime_UTR | 11400944 | 11401009 | 11400944 | ID=Msa1234170-mRNA-1:five_prime_utr;Parent=Msa1234170-mRNA-1 |
| chr8_2 | CDS | 11401010 | 11401084 | 11401010 | ID=Msa1234170-mRNA-1:cds;Parent=Msa1234170-mRNA-1 |
| chr8_2 | CDS | 11404464 | 11404868 | 11404464 | ID=Msa1234170-mRNA-1:cds;Parent=Msa1234170-mRNA-1 |
| chr8_2 | CDS | 11405002 | 11405259 | 11405002 | ID=Msa1234170-mRNA-1:cds;Parent=Msa1234170-mRNA-1 |
| chr8_2 | CDS | 11405355 | 11405573 | 11405355 | ID=Msa1234170-mRNA-1:cds;Parent=Msa1234170-mRNA-1 |
| chr8_2 | three_prime_UTR | 11405574 | 11405914 | 11405574 | ID=Msa1234170-mRNA-1:three_prime_utr;Parent=Msa1234170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
