Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234890 | XP_003627354.2 | 89.524 | 105 | 11 | 0 | 1 | 105 | 1 | 105 | 2.21e-43 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234890 | sp|Q9LQI9|UBP1B_ARATH | 86.486 | 74 | 10 | 0 | 32 | 105 | 24 | 97 | 1.09e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234890 | A0A6P6XI40 | 77.143 | 105 | 16 | 2 | 1 | 105 | 1 | 97 | 3.60e-46 | 165 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1234890 | Msa1276830 | 0.834739 | 2.517918e-56 | -8.615850e-47 |
| Msa1174780 | Msa1234890 | 0.824555 | 7.575121e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234890 | MtrunA17_Chr8g0344491 | 89.524 | 105 | 11 | 0 | 1 | 105 | 1 | 105 | 2.03e-47 | 159 |
| Msa1234890 | MtrunA17_Chr8g0344431 | 98.462 | 65 | 1 | 0 | 95 | 159 | 198 | 262 | 2.48e-38 | 131 |
| Msa1234890 | MtrunA17_Chr4g0070231 | 67.949 | 78 | 23 | 2 | 22 | 98 | 6 | 82 | 8.49e-30 | 112 |
| Msa1234890 | MtrunA17_Chr3g0139111 | 66.176 | 68 | 20 | 1 | 34 | 98 | 29 | 96 | 2.29e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234890 | AT1G17370.1 | 86.486 | 74 | 10 | 0 | 32 | 105 | 24 | 97 | 1.11e-41 | 144 |
| Msa1234890 | AT1G17370.2 | 86.486 | 74 | 10 | 0 | 32 | 105 | 24 | 97 | 1.15e-41 | 144 |
| Msa1234890 | AT1G54080.2 | 68.868 | 106 | 32 | 1 | 1 | 105 | 1 | 106 | 3.78e-39 | 137 |
| Msa1234890 | AT1G54080.1 | 68.868 | 106 | 32 | 1 | 1 | 105 | 1 | 106 | 4.33e-39 | 137 |
| Msa1234890 | AT3G14100.1 | 77.027 | 74 | 17 | 0 | 32 | 105 | 29 | 102 | 1.28e-37 | 133 |
| Msa1234890 | AT1G72490.2 | 44.828 | 87 | 39 | 1 | 73 | 159 | 210 | 287 | 1.12e-14 | 70.1 |
| Msa1234890 | AT1G72490.1 | 44.828 | 87 | 39 | 1 | 73 | 159 | 210 | 287 | 1.12e-14 | 70.1 |
| Msa1234890 | AT1G72490.3 | 44.828 | 87 | 39 | 1 | 73 | 159 | 211 | 288 | 1.92e-14 | 69.3 |
Find 56 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTAAATCTACAGCTTCTA+AGG | 0.295510 | 8_2:-12634144 | Msa1234890:intron |
| AAAAGCTTACACCCTTCAAC+TGG | 0.359205 | 8_2:+12634518 | None:intergenic |
| GAATTGATGAAGGAAGTAAA+TGG | 0.372567 | 8_2:-12634006 | Msa1234890:CDS |
| CACACACTGCGGCAAGTACT+TGG | 0.374575 | 8_2:+12634944 | None:intergenic |
| ATGTGGAACAACTCATGTTA+TGG | 0.380878 | 8_2:-12633358 | Msa1234890:three_prime_UTR |
| GCGGGTACTGGCCCAGTTGA+AGG | 0.395293 | 8_2:-12634530 | Msa1234890:CDS |
| GAAATTTATTAGGGTTCAAA+GGG | 0.405739 | 8_2:+12637070 | None:intergenic |
| GGCAAATTTCCACTTGGGAT+TGG | 0.418426 | 8_2:+12634980 | None:intergenic |
| GAGGAGTCTCTTTCTGTAAG+AGG | 0.424281 | 8_2:-12637109 | Msa1234890:five_prime_UTR |
| TGTTATGGAAAATCACATAA+TGG | 0.427256 | 8_2:-12633343 | Msa1234890:three_prime_UTR |
| CCAAGTGGAAATTTGCCTCC+TGG | 0.436571 | 8_2:-12634974 | Msa1234890:CDS |
| GGAAATTTATTAGGGTTCAA+AGG | 0.453282 | 8_2:+12637069 | None:intergenic |
| AATTGATGAAGGAAGTAAAT+GGG | 0.457283 | 8_2:-12634005 | Msa1234890:CDS |
| ATTTCTGATTTGTACTAGCT+TGG | 0.459248 | 8_2:-12633320 | Msa1234890:three_prime_UTR |
| TCAAAATAATTCGCGTGCAC+CGG | 0.461705 | 8_2:-12634095 | Msa1234890:CDS |
| AGCTGAAAATGCAGAATCAT+AGG | 0.471928 | 8_2:-12637015 | Msa1234890:exon |
| ATAATATATGTACAAGATTG+TGG | 0.480049 | 8_2:-12633489 | Msa1234890:three_prime_UTR |
| TCCAAGCACTTCTTTAACAC+CGG | 0.492571 | 8_2:+12634076 | None:intergenic |
| GTGGCTCGGTTACTTGTGTA+TGG | 0.493557 | 8_2:+12634570 | None:intergenic |
| AACTTCTTGCAGAAGTGGCT+CGG | 0.499016 | 8_2:+12634556 | None:intergenic |
| TAATATATGTACAAGATTGT+GGG | 0.500372 | 8_2:-12633488 | Msa1234890:three_prime_UTR |
| ACAAGAAGAGTATAAAGAAG+AGG | 0.502421 | 8_2:-12634051 | Msa1234890:CDS |
| CCAGGAGGCAAATTTCCACT+TGG | 0.505891 | 8_2:+12634974 | None:intergenic |
| CGGGTACTGGCCCAGTTGAA+GGG | 0.510220 | 8_2:-12634529 | Msa1234890:CDS |
| CTACTCTCCTTGTAACATGT+TGG | 0.523367 | 8_2:-12633243 | Msa1234890:three_prime_UTR |
| TGTAAGAGGGTCACTGCGTA+GGG | 0.532228 | 8_2:-12637095 | Msa1234890:five_prime_UTR |
| GCAGAAGAGAGAATTGATGA+AGG | 0.534749 | 8_2:-12634016 | Msa1234890:CDS |
| CAGGAGGCAAATTTCCACTT+GGG | 0.537949 | 8_2:+12634975 | None:intergenic |
| TGGTCTCTTAGCTCCACCTC+AGG | 0.539491 | 8_2:-12636900 | Msa1234890:intron |
| ACCTTTGTTAGTTCATGTCA+AGG | 0.546206 | 8_2:-12633832 | Msa1234890:three_prime_UTR |
| CTGTAAGAGGGTCACTGCGT+AGG | 0.547670 | 8_2:-12637096 | Msa1234890:five_prime_UTR |
| GAGTATAAAGAAGAGGAATG+AGG | 0.556375 | 8_2:-12634044 | Msa1234890:CDS |
| TCAAGGTAAACTATTCAAGA+TGG | 0.556454 | 8_2:-12633815 | Msa1234890:three_prime_UTR |
| TGTGAGAAAATGCAGGTATG+TGG | 0.574705 | 8_2:-12634600 | Msa1234890:intron |
| AGCAATTCCAACATGTTACA+AGG | 0.580309 | 8_2:+12633236 | None:intergenic |
| GAATAGGGACCAACCTGAGG+TGG | 0.581351 | 8_2:+12636887 | None:intergenic |
| CAACATGTTACAAGGAGAGT+AGG | 0.584741 | 8_2:+12633244 | None:intergenic |
| TGAGGTGGAGCTAAGAGACC+AGG | 0.584784 | 8_2:+12636902 | None:intergenic |
| AGGAGTCTCTTTCTGTAAGA+GGG | 0.588380 | 8_2:-12637108 | Msa1234890:five_prime_UTR |
| CAAGTACTTGGATCAAAACC+AGG | 0.592915 | 8_2:+12634956 | None:intergenic |
| AATATATGTACAAGATTGTG+GGG | 0.596295 | 8_2:-12633487 | Msa1234890:three_prime_UTR |
| ACCGGTGTTAAAGAAGTGCT+TGG | 0.598343 | 8_2:-12634077 | Msa1234890:CDS |
| CAGATTGAACCAATCCCAAG+TGG | 0.614650 | 8_2:-12634989 | Msa1234890:CDS |
| GAGAGTAGGTAACTACAAAG+TGG | 0.620116 | 8_2:+12633258 | None:intergenic |
| ACCTTGACATGAACTAACAA+AGG | 0.620528 | 8_2:+12633831 | None:intergenic |
| TGTGATTGTGTCTACAAATG+TGG | 0.620589 | 8_2:-12633375 | Msa1234890:three_prime_UTR |
| TTTCCAGTGAAAATTTCACT+AGG | 0.629878 | 8_2:-12637051 | Msa1234890:five_prime_UTR |
| AAAGCTTACACCCTTCAACT+GGG | 0.638369 | 8_2:+12634519 | None:intergenic |
| GTGAGAAAATGCAGGTATGT+GGG | 0.639135 | 8_2:-12634599 | Msa1234890:intron |
| ATTGTGGGGAGAGCATGAAG+TGG | 0.648843 | 8_2:-12633473 | Msa1234890:three_prime_UTR |
| CAACAGTCTCTCTATCACCC+TGG | 0.675382 | 8_2:-12636920 | Msa1234890:CDS |
| CTCCTCTGAGAAAATACCAG+AGG | 0.686802 | 8_2:+12637126 | None:intergenic |
| GAGGTGGAGCTAAGAGACCA+GGG | 0.691045 | 8_2:+12636903 | None:intergenic |
| AAATTTATTAGGGTTCAAAG+GGG | 0.735571 | 8_2:+12637071 | None:intergenic |
| TAGACAAAACTCACACACTG+CGG | 0.742849 | 8_2:+12634933 | None:intergenic |
| GTACTTGGATCAAAACCAGG+AGG | 0.749205 | 8_2:+12634959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATTTAATAAGAAAATT+GGG | - | chr8_2:12633625-12633644 | Msa1234890:intron | 10.0% |
| !!! | AAAAAATTGAATTTTTATAG+TGG | - | chr8_2:12633687-12633706 | Msa1234890:intron | 10.0% |
| !!! | AAAAATTGAATTTTTATAGT+GGG | - | chr8_2:12633688-12633707 | Msa1234890:intron | 10.0% |
| !!! | AAAATTGATTTTTTATTTAG+TGG | - | chr8_2:12633729-12633748 | Msa1234890:intron | 10.0% |
| !!! | AAATTGATTTTTTATTTAGT+GGG | - | chr8_2:12633730-12633749 | Msa1234890:intron | 10.0% |
| !!! | AAAAAAATTGAATTTTATAG+TGG | - | chr8_2:12633811-12633830 | Msa1234890:three_prime_UTR | 10.0% |
| !!! | AAAAAATTGAATTTTATAGT+GGG | - | chr8_2:12633812-12633831 | Msa1234890:three_prime_UTR | 10.0% |
| !! | TTAATTCATACAAAAAATAA+TGG | + | chr8_2:12633889-12633908 | None:intergenic | 10.0% |
| !!! | ATTATTTTTTGTATGAATTA+AGG | - | chr8_2:12633888-12633907 | Msa1234890:intron | 10.0% |
| !!! | TTTGCATTTTTTGTTTATTA+GGG | - | chr8_2:12633546-12633565 | Msa1234890:intron | 15.0% |
| !! | CTTCAATTTAATAAGAAAAT+TGG | - | chr8_2:12633624-12633643 | Msa1234890:intron | 15.0% |
| !! | TCAATTTAATAAGAAAATTG+GGG | - | chr8_2:12633626-12633645 | Msa1234890:intron | 15.0% |
| !!! | TGATGAAAAAAATTGAATTT+TGG | - | chr8_2:12633845-12633864 | Msa1234890:three_prime_UTR | 15.0% |
| !! | ATAACATTTAGATTCATAAA+GGG | + | chr8_2:12634679-12634698 | None:intergenic | 15.0% |
| !! | AATAACATTTAGATTCATAA+AGG | + | chr8_2:12634680-12634699 | None:intergenic | 15.0% |
| !! | AATCATAAAACAAAAGAAAA+GGG | + | chr8_2:12635489-12635508 | None:intergenic | 15.0% |
| !! | ATTATAAACATCATACTTTA+TGG | - | chr8_2:12636433-12636452 | Msa1234890:intron | 15.0% |
| !! | ATTAAATTGTTTATCTAAAG+AGG | - | chr8_2:12636759-12636778 | Msa1234890:intron | 15.0% |
| !!! | TTTTCACTGGAAATTTATTA+GGG | + | chr8_2:12633300-12633319 | None:intergenic | 20.0% |
| !!! | ATTTTCACTGGAAATTTATT+AGG | + | chr8_2:12633301-12633320 | None:intergenic | 20.0% |
| !!! | CTTTGCATTTTTTGTTTATT+AGG | - | chr8_2:12633545-12633564 | Msa1234890:intron | 20.0% |
| !!! | ATTTTTTTTTAGTGGGTATT+TGG | - | chr8_2:12633778-12633797 | Msa1234890:intron | 20.0% |
| !!! | TCATACAAAAAATAATGGAA+TGG | + | chr8_2:12633884-12633903 | None:intergenic | 20.0% |
| !!! | ATTAAGGTTGTTAATTTTTC+TGG | - | chr8_2:12633904-12633923 | Msa1234890:intron | 20.0% |
| !!! | TTAAGGTTGTTAATTTTTCT+GGG | - | chr8_2:12633905-12633924 | Msa1234890:intron | 20.0% |
| !!! | AATTTTTTTCCTTTTTGTGT+TGG | - | chr8_2:12634158-12634177 | Msa1234890:intron | 20.0% |
| !! | ATAAGTTTGCAATTGATATA+TGG | - | chr8_2:12634190-12634209 | Msa1234890:intron | 20.0% |
| !! | TCACAAATGAAACTAAAATT+GGG | + | chr8_2:12634392-12634411 | None:intergenic | 20.0% |
| !! | ATCACAAATGAAACTAAAAT+TGG | + | chr8_2:12634393-12634412 | None:intergenic | 20.0% |
| !! | AAAATAGTTCAGTACTTTAA+AGG | + | chr8_2:12634589-12634608 | None:intergenic | 20.0% |
| !! | ATGAATCTAAATGTTATTAG+AGG | - | chr8_2:12634682-12634701 | Msa1234890:intron | 20.0% |
| !!! | CATTTTCATTTTCTTCTATT+AGG | - | chr8_2:12635146-12635165 | Msa1234890:intron | 20.0% |
| !!! | TTTTTTGTCTGTTATTGTTT+TGG | - | chr8_2:12635194-12635213 | Msa1234890:intron | 20.0% |
| !! | ACAAATATTCAATCTTGATT+TGG | - | chr8_2:12635288-12635307 | Msa1234890:intron | 20.0% |
| !! | AGAAAAGATGAAAAGAAAAA+GGG | + | chr8_2:12635315-12635334 | None:intergenic | 20.0% |
| !! | AAGAAAAGATGAAAAGAAAA+AGG | + | chr8_2:12635316-12635335 | None:intergenic | 20.0% |
| !! | AAGGTAAAAAAGAAGAAAAA+AGG | + | chr8_2:12635340-12635359 | None:intergenic | 20.0% |
| !! | GATCAATAAGATTGAATAAA+AGG | + | chr8_2:12635462-12635481 | None:intergenic | 20.0% |
| !! | CAATCATAAAACAAAAGAAA+AGG | + | chr8_2:12635490-12635509 | None:intergenic | 20.0% |
| !! | TTGCAAGATATAATAAACTT+AGG | + | chr8_2:12635603-12635622 | None:intergenic | 20.0% |
| !! | TGATGTTTATAATTATGTTG+TGG | + | chr8_2:12636426-12636445 | None:intergenic | 20.0% |
| !! | ATAATATATGTACAAGATTG+TGG | - | chr8_2:12636869-12636888 | Msa1234890:intron | 20.0% |
| !! | TAATATATGTACAAGATTGT+GGG | - | chr8_2:12636870-12636889 | Msa1234890:intron | 20.0% |
| !!! | TGATATCTTTGTTTTGTTAA+CGG | - | chr8_2:12636939-12636958 | Msa1234890:CDS | 20.0% |
| !! | AATCACATGAAAAAATTAAC+GGG | + | chr8_2:12636970-12636989 | None:intergenic | 20.0% |
| !! | CAATCACATGAAAAAATTAA+CGG | + | chr8_2:12636971-12636990 | None:intergenic | 20.0% |
| ! | AAATTTATTAGGGTTCAAAG+GGG | + | chr8_2:12633290-12633309 | None:intergenic | 25.0% |
| ! | GAAATTTATTAGGGTTCAAA+GGG | + | chr8_2:12633291-12633310 | None:intergenic | 25.0% |
| ! | TAATAAGAAAATTGGGGTAA+TGG | - | chr8_2:12633632-12633651 | Msa1234890:intron | 25.0% |
| ! | AATAAGAAAATTGGGGTAAT+GGG | - | chr8_2:12633633-12633652 | Msa1234890:intron | 25.0% |
| !!! | TAATGGGTTTGATTTTTAGT+GGG | - | chr8_2:12633649-12633668 | Msa1234890:intron | 25.0% |
| !!! | ATTTTTTATTTAGTGGGTGT+TGG | - | chr8_2:12633736-12633755 | Msa1234890:intron | 25.0% |
| !!! | TTTTTTATTTAGTGGGTGTT+GGG | - | chr8_2:12633737-12633756 | Msa1234890:intron | 25.0% |
| ! | TATATATATGAAAGCTCACT+TGG | - | chr8_2:12634031-12634050 | Msa1234890:CDS | 25.0% |
| ! | CATCATATTACTAAATAGAC+TGG | + | chr8_2:12634096-12634115 | None:intergenic | 25.0% |
| ! | GTCTATTTAGTAATATGATG+TGG | - | chr8_2:12634096-12634115 | Msa1234890:CDS | 25.0% |
| ! | ATTTAGTAATATGATGTGGT+TGG | - | chr8_2:12634100-12634119 | Msa1234890:CDS | 25.0% |
| !!! | TTTAGTTTGTATTCAAACTG+TGG | - | chr8_2:12634339-12634358 | Msa1234890:intron | 25.0% |
| ! | TTTCATTTGTGATTAACATG+CGG | - | chr8_2:12634400-12634419 | Msa1234890:intron | 25.0% |
| !!! | TTTTTGAGTGGAAAGTAAAA+GGG | - | chr8_2:12634903-12634922 | Msa1234890:intron | 25.0% |
| !!! | TATTTTAGATAACTTGTCCT+TGG | - | chr8_2:12634934-12634953 | Msa1234890:intron | 25.0% |
| !!! | ATTTTAGATAACTTGTCCTT+GGG | - | chr8_2:12634935-12634954 | Msa1234890:intron | 25.0% |
| ! | AGGAAAAACAAAAATCCTAT+GGG | + | chr8_2:12635068-12635087 | None:intergenic | 25.0% |
| ! | TAGGAAAAACAAAAATCCTA+TGG | + | chr8_2:12635069-12635088 | None:intergenic | 25.0% |
| ! | GAAAAGATGAAAAGAAAAAG+GGG | + | chr8_2:12635314-12635333 | None:intergenic | 25.0% |
| ! | AGAGAAAGAAACAAACAATT+AGG | + | chr8_2:12635710-12635729 | None:intergenic | 25.0% |
| !! | AGACATGCAAATTCTAATTT+TGG | + | chr8_2:12636021-12636040 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTTGCAATATCA+AGG | - | chr8_2:12636148-12636167 | Msa1234890:intron | 25.0% |
| ! | AATTGATGAAGGAAGTAAAT+GGG | - | chr8_2:12636353-12636372 | Msa1234890:intron | 25.0% |
| ! | AATATATGTACAAGATTGTG+GGG | - | chr8_2:12636871-12636890 | Msa1234890:intron | 25.0% |
| ! | TGTTATGGAAAATCACATAA+TGG | - | chr8_2:12637015-12637034 | Msa1234890:exon | 25.0% |
| GGAAATTTATTAGGGTTCAA+AGG | + | chr8_2:12633292-12633311 | None:intergenic | 30.0% | |
| TTTCCAGTGAAAATTTCACT+AGG | - | chr8_2:12633307-12633326 | Msa1234890:three_prime_UTR | 30.0% | |
| !!! | GTAATGGGTTTGATTTTTAG+TGG | - | chr8_2:12633648-12633667 | Msa1234890:intron | 30.0% |
| !!! | TTTGATTTTTAGTGGGTGTT+TGG | - | chr8_2:12633656-12633675 | Msa1234890:intron | 30.0% |
| !!! | GAATTTTTATAGTGGGTGTT+TGG | - | chr8_2:12633695-12633714 | Msa1234890:intron | 30.0% |
| !!! | TGAATTTTATAGTGGGTAGT+TGG | - | chr8_2:12633819-12633838 | Msa1234890:three_prime_UTR | 30.0% |
| !!! | GGTAAAGAAGCATTTTTTGT+AGG | - | chr8_2:12634052-12634071 | Msa1234890:CDS | 30.0% |
| ATATGGTATTGTTTCCTTTG+AGG | - | chr8_2:12634207-12634226 | Msa1234890:intron | 30.0% | |
| AAGAAAACAAAACTCCTATC+TGG | + | chr8_2:12634309-12634328 | None:intergenic | 30.0% | |
| AACCCGATTAAGTCATATTA+GGG | - | chr8_2:12634503-12634522 | Msa1234890:intron | 30.0% | |
| ! | TTTCCCTTTTGCAAATCAAA+CGG | + | chr8_2:12634530-12634549 | None:intergenic | 30.0% |
| !!! | GTTTTTGAGTGGAAAGTAAA+AGG | - | chr8_2:12634902-12634921 | Msa1234890:intron | 30.0% |
| !!! | TGGAAAGTAAAAGGGTATTT+TGG | - | chr8_2:12634911-12634930 | Msa1234890:intron | 30.0% |
| !! | GTTTGATTTGCAGAAAGTAA+GGG | + | chr8_2:12635042-12635061 | None:intergenic | 30.0% |
| !! | TGTTTGATTTGCAGAAAGTA+AGG | + | chr8_2:12635043-12635062 | None:intergenic | 30.0% |
| ACAAACTAAACTACAACAGT+AGG | + | chr8_2:12635088-12635107 | None:intergenic | 30.0% | |
| !! | TTTAGTTTGTATTCGAACTG+TGG | - | chr8_2:12635098-12635117 | Msa1234890:intron | 30.0% |
| AGAAAATGAAAATGAGTCCA+GGG | + | chr8_2:12635140-12635159 | None:intergenic | 30.0% | |
| AAGAAAATGAAAATGAGTCC+AGG | + | chr8_2:12635141-12635160 | None:intergenic | 30.0% | |
| TATCAATACAGTATAGCATG+AGG | + | chr8_2:12635260-12635279 | None:intergenic | 30.0% | |
| CAAGAAGTAACATACAGTAA+TGG | + | chr8_2:12635654-12635673 | None:intergenic | 30.0% | |
| !! | TAAGCTTTTTAGGAAAGAGA+AGG | - | chr8_2:12635854-12635873 | Msa1234890:intron | 30.0% |
| GCATGTCTATAATGTATGTA+AGG | - | chr8_2:12636033-12636052 | Msa1234890:intron | 30.0% | |
| GTTTAAATCTACAGCTTCTA+AGG | - | chr8_2:12636214-12636233 | Msa1234890:intron | 30.0% | |
| ! | ACAAGAAGAGTATAAAGAAG+AGG | - | chr8_2:12636307-12636326 | Msa1234890:intron | 30.0% |
| GAATTGATGAAGGAAGTAAA+TGG | - | chr8_2:12636352-12636371 | Msa1234890:intron | 30.0% | |
| TCAAGGTAAACTATTCAAGA+TGG | - | chr8_2:12636543-12636562 | Msa1234890:intron | 30.0% | |
| ! | ATTTCTGATTTGTACTAGCT+TGG | - | chr8_2:12637038-12637057 | Msa1234890:five_prime_UTR | 30.0% |
| ! | CTTCCTAGTGAAATTTTCAC+TGG | + | chr8_2:12633313-12633332 | None:intergenic | 35.0% |
| AGCTGAAAATGCAGAATCAT+AGG | - | chr8_2:12633343-12633362 | Msa1234890:three_prime_UTR | 35.0% | |
| CGAAGAAATGGAGATGAATA+GGG | + | chr8_2:12633489-12633508 | None:intergenic | 35.0% | |
| TCGAAGAAATGGAGATGAAT+AGG | + | chr8_2:12633490-12633509 | None:intergenic | 35.0% | |
| AGAGAAGATGATCGAAGAAA+TGG | + | chr8_2:12633501-12633520 | None:intergenic | 35.0% | |
| ! | TGGGTTTTCATCAATTGAGT+AGG | - | chr8_2:12633924-12633943 | Msa1234890:intron | 35.0% |
| ! | GGGTTTTCATCAATTGAGTA+GGG | - | chr8_2:12633925-12633944 | Msa1234890:intron | 35.0% |
| ! | GGTTTTCATCAATTGAGTAG+GGG | - | chr8_2:12633926-12633945 | Msa1234890:intron | 35.0% |
| ! | TGTGTGTTTGAAGTGAGAAA+TGG | - | chr8_2:12633978-12633997 | Msa1234890:intron | 35.0% |
| !! | GGTTGGTGTTAATGTAACTA+TGG | - | chr8_2:12634117-12634136 | Msa1234890:CDS | 35.0% |
| ACACTAATGCCAACACAAAA+AGG | + | chr8_2:12634170-12634189 | None:intergenic | 35.0% | |
| !! | TGTTTCCTTTGAGGTTTAGT+TGG | - | chr8_2:12634216-12634235 | Msa1234890:intron | 35.0% |
| !! | GTTTCCTTTGAGGTTTAGTT+GGG | - | chr8_2:12634217-12634236 | Msa1234890:intron | 35.0% |
| ! | TGAATTTGACTTAGCCAGAT+AGG | - | chr8_2:12634292-12634311 | Msa1234890:intron | 35.0% |
| TGTTTCCTTGGAGGTTTAAT+TGG | - | chr8_2:12634426-12634445 | Msa1234890:intron | 35.0% | |
| GTTTCCTTGGAGGTTTAATT+GGG | - | chr8_2:12634427-12634446 | Msa1234890:intron | 35.0% | |
| ATTTCCCAATTAAACCTCCA+AGG | + | chr8_2:12634434-12634453 | None:intergenic | 35.0% | |
| AATTGGGAAATGAATCTGCA+TGG | - | chr8_2:12634443-12634462 | Msa1234890:intron | 35.0% | |
| GAAATGAATCTGCATGGTTT+AGG | - | chr8_2:12634449-12634468 | Msa1234890:intron | 35.0% | |
| GAACCCGATTAAGTCATATT+AGG | - | chr8_2:12634502-12634521 | Msa1234890:intron | 35.0% | |
| GACCCTAATATGACTTAATC+GGG | + | chr8_2:12634508-12634527 | None:intergenic | 35.0% | |
| GGACCCTAATATGACTTAAT+CGG | + | chr8_2:12634509-12634528 | None:intergenic | 35.0% | |
| ! | ATTTGCAAAAGGGAAAGTAC+CGG | - | chr8_2:12634534-12634553 | Msa1234890:CDS | 35.0% |
| ! | TTGTCCTGTTCGATTTTTGA+TGG | - | chr8_2:12634609-12634628 | Msa1234890:intron | 35.0% |
| TTGTCCATCAAAAATCGAAC+AGG | + | chr8_2:12634616-12634635 | None:intergenic | 35.0% | |
| !! | GTTCGATTTTTGATGGACAA+TGG | - | chr8_2:12634616-12634635 | Msa1234890:intron | 35.0% |
| AGAAAGAGATTGTAGAGAGT+CGG | - | chr8_2:12634705-12634724 | Msa1234890:intron | 35.0% | |
| TATGAGAGAGTGAAAATACG+AGG | - | chr8_2:12634871-12634890 | Msa1234890:intron | 35.0% | |
| ATGAGAGAGTGAAAATACGA+GGG | - | chr8_2:12634872-12634891 | Msa1234890:intron | 35.0% | |
| ACCATTAACTAGAGTGAATG+GGG | + | chr8_2:12635237-12635256 | None:intergenic | 35.0% | |
| GACCATTAACTAGAGTGAAT+GGG | + | chr8_2:12635238-12635257 | None:intergenic | 35.0% | |
| GTTCAATCTGCAAAACGAAA+AGG | + | chr8_2:12635359-12635378 | None:intergenic | 35.0% | |
| TATGATTGTGAGACAAGCTT+AGG | - | chr8_2:12635502-12635521 | Msa1234890:intron | 35.0% | |
| ATGGTTTAATGCAACAGAAC+TGG | + | chr8_2:12635635-12635654 | None:intergenic | 35.0% | |
| CTTTATCTGTGAGAAAATGC+AGG | - | chr8_2:12635751-12635770 | Msa1234890:intron | 35.0% | |
| ! | ACTTCTGCAAGAAGTTTTTG+CGG | - | chr8_2:12635809-12635828 | Msa1234890:intron | 35.0% |
| !! | TTGAAGGGTGTAAGCTTTTT+AGG | - | chr8_2:12635844-12635863 | Msa1234890:intron | 35.0% |
| ACATCAAAACCTTAATGTCG+CGG | + | chr8_2:12636097-12636116 | None:intergenic | 35.0% | |
| GAGTATAAAGAAGAGGAATG+AGG | - | chr8_2:12636314-12636333 | Msa1234890:intron | 35.0% | |
| ACCTTTGTTAGTTCATGTCA+AGG | - | chr8_2:12636526-12636545 | Msa1234890:intron | 35.0% | |
| ACCTTGACATGAACTAACAA+AGG | + | chr8_2:12636530-12636549 | None:intergenic | 35.0% | |
| TGTGATTGTGTCTACAAATG+TGG | - | chr8_2:12636983-12637002 | Msa1234890:CDS | 35.0% | |
| ATGTGGAACAACTCATGTTA+TGG | - | chr8_2:12637000-12637019 | Msa1234890:CDS | 35.0% | |
| AGCAATTCCAACATGTTACA+AGG | + | chr8_2:12637125-12637144 | None:intergenic | 35.0% | |
| AGGAGTCTCTTTCTGTAAGA+GGG | - | chr8_2:12633250-12633269 | Msa1234890:three_prime_UTR | 40.0% | |
| GCTACATAGTACAAAACCCT+AGG | + | chr8_2:12633585-12633604 | None:intergenic | 40.0% | |
| !!! | AGTGGGTATTTGGCTTTTGA+TGG | - | chr8_2:12633788-12633807 | Msa1234890:intron | 40.0% |
| CTTTCCCAACTAAACCTCAA+AGG | + | chr8_2:12634224-12634243 | None:intergenic | 40.0% | |
| !! | CTTTGAGGTTTAGTTGGGAA+AGG | - | chr8_2:12634222-12634241 | Msa1234890:intron | 40.0% |
| ACATTAACTCGTAAGCCATG+CGG | + | chr8_2:12634251-12634270 | None:intergenic | 40.0% | |
| ATGGCTTACGAGTTAATGTC+TGG | - | chr8_2:12634252-12634271 | Msa1234890:intron | 40.0% | |
| AACATGCGGTATTGTTTCCT+TGG | - | chr8_2:12634414-12634433 | Msa1234890:intron | 40.0% | |
| !! | GGTCCGTTTGATTTGCAAAA+GGG | - | chr8_2:12634524-12634543 | Msa1234890:CDS | 40.0% |
| ! | ACTGTTTGTACCGTTTTGTC+CGG | + | chr8_2:12634556-12634575 | None:intergenic | 40.0% |
| GAAAGAGATTGTAGAGAGTC+GGG | - | chr8_2:12634706-12634725 | Msa1234890:intron | 40.0% | |
| AAAGAGATTGTAGAGAGTCG+GGG | - | chr8_2:12634707-12634726 | Msa1234890:intron | 40.0% | |
| AGAGAGAGAGAGAGAGATAA+AGG | - | chr8_2:12634808-12634827 | Msa1234890:intron | 40.0% | |
| GAGAGAGAGAGAGAGATAAA+GGG | - | chr8_2:12634809-12634828 | Msa1234890:intron | 40.0% | |
| AGAGAGAGAGAGAGATAAAG+GGG | - | chr8_2:12634810-12634829 | Msa1234890:intron | 40.0% | |
| !! | AGGGAGAGAATGTTTTTGAG+TGG | - | chr8_2:12634891-12634910 | Msa1234890:intron | 40.0% |
| ATTTGCAGAAAGTAAGGGAC+TGG | + | chr8_2:12635037-12635056 | None:intergenic | 40.0% | |
| TGCAAATCAAACACACCCAT+AGG | - | chr8_2:12635050-12635069 | Msa1234890:intron | 40.0% | |
| GTTTGTATTCGAACTGTGGA+TGG | - | chr8_2:12635102-12635121 | Msa1234890:intron | 40.0% | |
| TCCCCATTCACTCTAGTTAA+TGG | - | chr8_2:12635233-12635252 | Msa1234890:intron | 40.0% | |
| GGACCATTAACTAGAGTGAA+TGG | + | chr8_2:12635239-12635258 | None:intergenic | 40.0% | |
| CAAGTACTTGGATCAAAACC+AGG | + | chr8_2:12635405-12635424 | None:intergenic | 40.0% | |
| TAGACAAAACTCACACACTG+CGG | + | chr8_2:12635428-12635447 | None:intergenic | 40.0% | |
| TGTGAGAAAATGCAGGTATG+TGG | - | chr8_2:12635758-12635777 | Msa1234890:intron | 40.0% | |
| GTGAGAAAATGCAGGTATGT+GGG | - | chr8_2:12635759-12635778 | Msa1234890:intron | 40.0% | |
| GCAAAAACTTCTTGCAGAAG+TGG | + | chr8_2:12635810-12635829 | None:intergenic | 40.0% | |
| ! | CTTCTGCAAGAAGTTTTTGC+GGG | - | chr8_2:12635810-12635829 | Msa1234890:intron | 40.0% |
| AAAGCTTACACCCTTCAACT+GGG | + | chr8_2:12635842-12635861 | None:intergenic | 40.0% | |
| AAAAGCTTACACCCTTCAAC+TGG | + | chr8_2:12635843-12635862 | None:intergenic | 40.0% | |
| TCAAAATAATTCGCGTGCAC+CGG | - | chr8_2:12636263-12636282 | Msa1234890:intron | 40.0% | |
| TCCAAGCACTTCTTTAACAC+CGG | + | chr8_2:12636285-12636304 | None:intergenic | 40.0% | |
| GCAGAAGAGAGAATTGATGA+AGG | - | chr8_2:12636342-12636361 | Msa1234890:intron | 40.0% | |
| GAGAGTAGGTAACTACAAAG+TGG | + | chr8_2:12637103-12637122 | None:intergenic | 40.0% | |
| CAACATGTTACAAGGAGAGT+AGG | + | chr8_2:12637117-12637136 | None:intergenic | 40.0% | |
| CTACTCTCCTTGTAACATGT+TGG | - | chr8_2:12637115-12637134 | Msa1234890:five_prime_UTR | 40.0% | |
| ! | GTCCTCTGGTATTTTCTCAG+AGG | - | chr8_2:12633230-12633249 | Msa1234890:three_prime_UTR | 45.0% |
| ! | CTCCTCTGAGAAAATACCAG+AGG | + | chr8_2:12633235-12633254 | None:intergenic | 45.0% |
| GAGGAGTCTCTTTCTGTAAG+AGG | - | chr8_2:12633249-12633268 | Msa1234890:three_prime_UTR | 45.0% | |
| AGGGATTGCACTAAACACCT+AGG | - | chr8_2:12633565-12633584 | Msa1234890:intron | 45.0% | |
| GGGATTGCACTAAACACCTA+GGG | - | chr8_2:12633566-12633585 | Msa1234890:intron | 45.0% | |
| !! | TGGCTCTGAAATTGCGTTTG+AGG | - | chr8_2:12633998-12634017 | Msa1234890:CDS | 45.0% |
| TGTGGATGTGTTCTGCTGTT+GGG | - | chr8_2:12634357-12634376 | Msa1234890:intron | 45.0% | |
| ATGCGGTATTGTTTCCTTGG+AGG | - | chr8_2:12634417-12634436 | Msa1234890:intron | 45.0% | |
| !! | GGGTCCGTTTGATTTGCAAA+AGG | - | chr8_2:12634523-12634542 | Msa1234890:CDS | 45.0% |
| !! | AGGGAAAGTACCGGACAAAA+CGG | - | chr8_2:12634543-12634562 | Msa1234890:CDS | 45.0% |
| AAGAGATTGTAGAGAGTCGG+GGG | - | chr8_2:12634708-12634727 | Msa1234890:intron | 45.0% | |
| GAGATAAAGGGGAGAGAGAT+AGG | - | chr8_2:12634821-12634840 | Msa1234890:intron | 45.0% | |
| ATAAAGGGGAGAGAGATAGG+AGG | - | chr8_2:12634824-12634843 | Msa1234890:intron | 45.0% | |
| TAAAGGGGAGAGAGATAGGA+GGG | - | chr8_2:12634825-12634844 | Msa1234890:intron | 45.0% | |
| TCATGTCCTTCGCTAAACCA+CGG | + | chr8_2:12634974-12634993 | None:intergenic | 45.0% | |
| GAACTGTGGATGGATGTGTT+GGG | - | chr8_2:12635112-12635131 | Msa1234890:intron | 45.0% | |
| CAGATTGAACCAATCCCAAG+TGG | - | chr8_2:12635369-12635388 | Msa1234890:intron | 45.0% | |
| GGCAAATTTCCACTTGGGAT+TGG | + | chr8_2:12635381-12635400 | None:intergenic | 45.0% | |
| CAGGAGGCAAATTTCCACTT+GGG | + | chr8_2:12635386-12635405 | None:intergenic | 45.0% | |
| GTACTTGGATCAAAACCAGG+AGG | + | chr8_2:12635402-12635421 | None:intergenic | 45.0% | |
| AACTTCTTGCAGAAGTGGCT+CGG | + | chr8_2:12635805-12635824 | None:intergenic | 45.0% | |
| ! | CAAGAAGTTTTTGCGGGTAC+TGG | - | chr8_2:12635816-12635835 | Msa1234890:intron | 45.0% |
| CAATTGTAGCCGCGACATTA+AGG | - | chr8_2:12636085-12636104 | Msa1234890:intron | 45.0% | |
| !! | ACCGGTGTTAAAGAAGTGCT+TGG | - | chr8_2:12636281-12636300 | Msa1234890:intron | 45.0% |
| !!! | AAAATTTAATTTTTTTTTAG+TGG | - | chr8_2:12633770-12633789 | Msa1234890:intron | 5.0% |
| !!! | AAATTTAATTTTTTTTTAGT+GGG | - | chr8_2:12633771-12633790 | Msa1234890:intron | 5.0% |
| TGTAAGAGGGTCACTGCGTA+GGG | - | chr8_2:12633263-12633282 | Msa1234890:three_prime_UTR | 50.0% | |
| CAACAGTCTCTCTATCACCC+TGG | - | chr8_2:12633438-12633457 | Msa1234890:three_prime_UTR | 50.0% | |
| GATGAATAGGGACCAACCTG+AGG | + | chr8_2:12633477-12633496 | None:intergenic | 50.0% | |
| AGTTGGGAAAGGAATCCGCA+TGG | - | chr8_2:12634233-12634252 | Msa1234890:intron | 50.0% | |
| CTGTGGATGTGTTCTGCTGT+TGG | - | chr8_2:12634356-12634375 | Msa1234890:intron | 50.0% | |
| GAGAACGAGAGACGTGAGAT+AGG | - | chr8_2:12634755-12634774 | Msa1234890:intron | 50.0% | |
| ! | CGGGACAACTTTTTGTCCCA+AGG | + | chr8_2:12634954-12634973 | None:intergenic | 50.0% |
| TGGGACAAAAAGTTGTCCCG+TGG | - | chr8_2:12634954-12634973 | Msa1234890:CDS | 50.0% | |
| CATGTCCTTCGCTAAACCAC+GGG | + | chr8_2:12634973-12634992 | None:intergenic | 50.0% | |
| CGAACTGTGGATGGATGTGT+TGG | - | chr8_2:12635111-12635130 | Msa1234890:intron | 50.0% | |
| CCAGGAGGCAAATTTCCACT+TGG | + | chr8_2:12635387-12635406 | None:intergenic | 50.0% | |
| CCAAGTGGAAATTTGCCTCC+TGG | - | chr8_2:12635384-12635403 | Msa1234890:intron | 50.0% | |
| !! | GTGGCTCGGTTACTTGTGTA+TGG | + | chr8_2:12635791-12635810 | None:intergenic | 50.0% |
| CAAGGATCGCAAAGCAAACG+CGG | - | chr8_2:12636166-12636185 | Msa1234890:intron | 50.0% | |
| ! | ATTGTGGGGAGAGCATGAAG+TGG | - | chr8_2:12636885-12636904 | Msa1234890:intron | 50.0% |
| CTGTAAGAGGGTCACTGCGT+AGG | - | chr8_2:12633262-12633281 | Msa1234890:three_prime_UTR | 55.0% | |
| GAGGTGGAGCTAAGAGACCA+GGG | + | chr8_2:12633458-12633477 | None:intergenic | 55.0% | |
| TGAGGTGGAGCTAAGAGACC+AGG | + | chr8_2:12633459-12633478 | None:intergenic | 55.0% | |
| TGGTCTCTTAGCTCCACCTC+AGG | - | chr8_2:12633458-12633477 | Msa1234890:three_prime_UTR | 55.0% | |
| CTCTTAGCTCCACCTCAGGT+TGG | - | chr8_2:12633462-12633481 | Msa1234890:three_prime_UTR | 55.0% | |
| GAATAGGGACCAACCTGAGG+TGG | + | chr8_2:12633474-12633493 | None:intergenic | 55.0% | |
| GGGGAGAGAGAGAGAGATAG+AGG | - | chr8_2:12634727-12634746 | Msa1234890:intron | 55.0% | |
| GAGAGATAGGAGGGAGAGAG+AGG | - | chr8_2:12634834-12634853 | Msa1234890:intron | 55.0% | |
| GATAGGAGGGAGAGAGAGGA+AGG | - | chr8_2:12634838-12634857 | Msa1234890:intron | 55.0% | |
| GTTGTCCCGTGGTTTAGCGA+AGG | - | chr8_2:12634965-12634984 | Msa1234890:CDS | 55.0% | |
| CACACACTGCGGCAAGTACT+TGG | + | chr8_2:12635417-12635436 | None:intergenic | 55.0% | |
| GATGGATGTGTTGGGTGCCC+TGG | - | chr8_2:12635120-12635139 | Msa1234890:intron | 60.0% | |
| !! | CGGGTACTGGCCCAGTTGAA+GGG | - | chr8_2:12635829-12635848 | Msa1234890:intron | 60.0% |
| !! | GCGGGTACTGGCCCAGTTGA+AGG | - | chr8_2:12635828-12635847 | Msa1234890:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 12633218 | 12637162 | 12633218 | ID=Msa1234890;Name=Msa1234890 |
| chr8_2 | mRNA | 12633218 | 12637162 | 12633218 | ID=Msa1234890-mRNA-1;Parent=Msa1234890;Name=Msa1234890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=133|0.8|0.66|1|0.8|0.66|6|392|159 |
| chr8_2 | exon | 12633218 | 12633533 | 12633218 | ID=Msa1234890-mRNA-1:exon:4903;Parent=Msa1234890-mRNA-1 |
| chr8_2 | exon | 12633800 | 12633895 | 12633800 | ID=Msa1234890-mRNA-1:exon:4902;Parent=Msa1234890-mRNA-1 |
| chr8_2 | exon | 12633987 | 12634152 | 12633987 | ID=Msa1234890-mRNA-1:exon:4901;Parent=Msa1234890-mRNA-1 |
| chr8_2 | exon | 12634505 | 12634607 | 12634505 | ID=Msa1234890-mRNA-1:exon:4900;Parent=Msa1234890-mRNA-1 |
| chr8_2 | exon | 12634947 | 12635008 | 12634947 | ID=Msa1234890-mRNA-1:exon:4899;Parent=Msa1234890-mRNA-1 |
| chr8_2 | exon | 12636901 | 12637162 | 12636901 | ID=Msa1234890-mRNA-1:exon:4898;Parent=Msa1234890-mRNA-1 |
| chr8_2 | five_prime_UTR | 12637030 | 12637162 | 12637030 | ID=Msa1234890-mRNA-1:five_prime_utr;Parent=Msa1234890-mRNA-1 |
| chr8_2 | CDS | 12636901 | 12637029 | 12636901 | ID=Msa1234890-mRNA-1:cds;Parent=Msa1234890-mRNA-1 |
| chr8_2 | CDS | 12634947 | 12635008 | 12634947 | ID=Msa1234890-mRNA-1:cds;Parent=Msa1234890-mRNA-1 |
| chr8_2 | CDS | 12634505 | 12634607 | 12634505 | ID=Msa1234890-mRNA-1:cds;Parent=Msa1234890-mRNA-1 |
| chr8_2 | CDS | 12633987 | 12634152 | 12633987 | ID=Msa1234890-mRNA-1:cds;Parent=Msa1234890-mRNA-1 |
| chr8_2 | CDS | 12633876 | 12633895 | 12633876 | ID=Msa1234890-mRNA-1:cds;Parent=Msa1234890-mRNA-1 |
| chr8_2 | three_prime_UTR | 12633800 | 12633875 | 12633800 | ID=Msa1234890-mRNA-1:three_prime_utr;Parent=Msa1234890-mRNA-1 |
| chr8_2 | three_prime_UTR | 12633218 | 12633533 | 12633218 | ID=Msa1234890-mRNA-1:three_prime_utr;Parent=Msa1234890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
