AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1276830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1276830 MtrunA17_Chr8g0344491 98.144 431 4 1 1 431 1 427 0.0 877
Msa1276830 MtrunA17_Chr4g0070231 71.533 411 100 6 26 431 6 404 0.0 593
Msa1276830 MtrunA17_Chr3g0139111 66.506 415 115 10 38 431 29 440 0.0 551
Msa1276830 MtrunA17_Chr4g0045221 31.023 303 186 10 62 348 112 407 7.05e-34 132
Msa1276830 MtrunA17_Chr3g0133651 30.952 294 171 10 66 348 93 365 1.03e-33 130
Msa1276830 MtrunA17_Chr4g0074711 29.429 350 220 9 17 357 25 356 1.27e-33 130
Msa1276830 MtrunA17_Chr1g0153871 31.186 295 168 11 66 348 97 368 2.03e-33 130
Msa1276830 MtrunA17_Chr1g0153871 27.128 188 111 4 59 226 183 364 7.89e-15 76.3
Msa1276830 MtrunA17_Chr2g0288251 30.592 304 181 9 65 357 59 343 4.05e-33 129
Msa1276830 MtrunA17_Chr2g0328791 31.715 309 189 12 65 359 14 314 5.49e-33 129
Msa1276830 MtrunA17_Chr3g0110211 32.500 200 119 5 67 257 26 218 3.34e-28 114
Msa1276830 MtrunA17_Chr6g0466501 26.690 281 164 6 67 340 26 271 3.90e-24 105
Msa1276830 MtrunA17_Chr6g0466501 25.275 182 116 4 67 229 201 381 2.56e-12 68.9
Msa1276830 MtrunA17_Chr6g0465751 26.335 281 165 6 67 340 26 271 5.49e-24 104
Msa1276830 MtrunA17_Chr6g0465751 25.275 182 116 4 67 229 201 381 7.59e-13 70.5
Msa1276830 MtrunA17_Chr3g0134141 27.481 262 148 7 64 316 22 250 8.09e-22 98.2
Msa1276830 MtrunA17_Chr3g0134141 26.829 287 175 9 61 332 103 369 2.76e-16 81.3
Msa1276830 MtrunA17_Chr4g0044541 26.481 287 164 8 67 344 35 283 6.12e-21 95.5
Msa1276830 MtrunA17_Chr4g0044541 28.114 281 167 9 61 326 113 373 1.07e-19 91.7
Msa1276830 MtrunA17_Chr4g0044541 25.134 187 121 3 61 229 208 393 4.73e-13 71.2
Msa1276830 MtrunA17_Chr1g0153181 25.763 295 180 8 46 332 11 274 1.46e-20 94.4
Msa1276830 MtrunA17_Chr1g0153181 26.335 281 173 9 61 326 111 372 1.18e-17 85.5
Msa1276830 MtrunA17_Chr1g0153181 25.824 182 115 4 67 229 212 392 8.13e-13 70.5
Msa1276830 MtrunA17_Chr7g0265341 25.086 291 167 9 52 330 59 310 2.85e-20 93.6
Msa1276830 MtrunA17_Chr7g0265341 26.502 283 169 10 61 326 149 409 1.90e-15 78.6
Msa1276830 MtrunA17_Chr7g0265341 25.414 181 116 3 67 229 250 429 3.41e-12 68.6
Msa1276830 MtrunA17_Chr6g0466451 27.419 310 166 11 61 348 6 278 1.78e-18 87.8
Msa1276830 MtrunA17_Chr6g0466451 27.429 175 107 5 67 222 106 279 7.07e-13 70.5
Msa1276830 MtrunA17_Chr6g0465631 27.419 310 166 11 61 348 6 278 1.78e-18 87.8
Msa1276830 MtrunA17_Chr6g0465631 27.429 175 107 5 67 222 106 279 7.14e-13 70.5
Msa1276830 MtrunA17_Chr1g0201151 25.773 291 168 10 62 340 26 280 1.97e-18 87.8
Msa1276830 MtrunA17_Chr1g0201151 26.846 298 172 9 61 338 109 380 2.63e-18 87.4
Msa1276830 MtrunA17_Chr1g0179701 24.265 272 160 7 67 327 63 299 6.17e-17 83.2
Msa1276830 MtrunA17_Chr1g0179701 25.857 321 200 11 67 375 151 445 8.15e-17 82.8
Msa1276830 MtrunA17_Chr3g0087481 28.729 181 115 2 61 227 55 235 6.81e-16 77.0
Msa1276830 MtrunA17_Chr3g0087481 28.218 202 118 5 146 343 55 233 8.44e-13 67.8
Msa1276830 MtrunA17_Chr0c09g0493511 25.172 290 181 10 67 349 32 292 1.81e-15 78.6
Msa1276830 MtrunA17_Chr3g0116631 29.609 179 114 2 61 227 104 282 4.22e-15 75.5
Msa1276830 MtrunA17_Chr4g0058151 29.944 177 113 3 61 227 117 292 1.38e-14 74.3
Msa1276830 MtrunA17_Chr4g0061451 42.857 77 44 0 153 229 44 120 6.51e-14 71.6
Msa1276830 MtrunA17_Chr1g0190211 35.484 93 57 1 151 240 132 224 1.08e-13 70.5
Msa1276830 MtrunA17_Chr6g0465691 24.913 289 181 10 67 348 32 291 1.11e-13 72.8
Msa1276830 MtrunA17_Chr6g0465691 25.275 182 116 4 67 229 119 299 1.96e-12 68.9
Msa1276830 MtrunA17_Chr7g0267571 28.169 213 123 6 153 356 111 302 1.45e-13 71.2
Msa1276830 MtrunA17_Chr7g0267571 25.281 178 115 3 68 227 111 288 7.03e-11 63.2
Msa1276830 MtrunA17_Chr7g0219021 39.241 79 48 0 153 231 42 120 1.53e-13 70.5
Msa1276830 MtrunA17_Chr3g0121631 45.333 75 40 1 153 227 38 111 1.58e-13 67.8
Msa1276830 MtrunA17_Chr1g0181111 27.363 201 117 3 54 227 74 272 8.66e-13 68.6
Msa1276830 MtrunA17_Chr3g0119311 39.024 82 50 0 153 234 38 119 1.71e-12 64.7
Msa1276830 MtrunA17_Chr1g0177101 25.521 192 117 3 143 330 100 269 1.72e-11 65.1
Msa1276830 MtrunA17_Chr1g0177101 24.719 178 120 3 65 228 107 284 1.97e-11 64.7
Msa1276830 MtrunA17_Chr3g0086861 38.961 77 47 0 153 229 46 122 2.41e-11 65.5
Msa1276830 MtrunA17_Chr1g0168601 30.631 111 75 1 119 227 119 229 2.70e-11 63.5
Msa1276830 MtrunA17_Chr7g0266751 29.915 117 73 1 151 267 32 139 3.84e-11 60.8
Msa1276830 MtrunA17_Chr8g0383661 28.230 209 125 8 55 244 190 392 4.06e-11 65.1
Msa1276830 MtrunA17_Chr8g0393061 42.857 77 44 0 152 228 212 288 5.51e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1276830 AT1G17370.1 81.955 399 66 2 36 431 24 419 0.0 673
Msa1276830 AT1G17370.2 81.454 399 65 3 36 431 24 416 0.0 665
Msa1276830 AT3G14100.1 80.250 400 74 2 36 431 29 427 0.0 659
Msa1276830 AT1G54080.1 73.576 439 95 5 1 431 1 426 0.0 626
Msa1276830 AT1G54080.2 72.912 443 95 6 1 431 1 430 0.0 620
Msa1276830 AT5G19350.1 31.058 293 188 8 65 348 23 310 3.66e-36 138
Msa1276830 AT5G19350.2 30.375 293 186 8 65 348 23 306 3.59e-35 135
Msa1276830 AT1G49600.1 30.847 295 181 11 65 348 118 400 1.91e-34 133
Msa1276830 AT1G49600.3 30.847 295 181 11 65 348 118 400 2.96e-34 133
Msa1276830 AT1G49600.2 30.847 295 181 11 65 348 118 400 2.96e-34 133
Msa1276830 AT1G11650.2 28.882 322 192 9 37 349 42 335 4.35e-34 132
Msa1276830 AT4G27000.1 30.952 294 174 9 65 349 79 352 2.34e-33 130
Msa1276830 AT5G54900.1 29.966 297 179 9 63 349 57 334 3.48e-33 129
Msa1276830 AT3G19130.1 28.814 295 194 8 65 349 107 395 1.48e-32 128
Msa1276830 AT1G47490.1 29.630 297 175 10 66 348 101 377 1.19e-30 122
Msa1276830 AT1G11650.1 28.767 292 168 8 37 317 42 304 9.62e-30 117
Msa1276830 AT2G18510.1 34.000 200 116 5 67 257 26 218 1.20e-28 116
Msa1276830 AT1G47500.1 28.956 297 177 10 66 348 103 379 2.03e-27 114
Msa1276830 AT4G34110.1 28.159 277 157 7 67 334 37 280 9.30e-24 104
Msa1276830 AT4G34110.1 28.383 303 172 10 61 348 115 387 1.27e-20 95.1
Msa1276830 AT4G34110.1 25.414 181 116 3 67 229 216 395 1.20e-12 70.1
Msa1276830 AT3G16380.1 28.014 282 170 7 67 340 113 369 2.50e-23 102
Msa1276830 AT3G16380.1 26.027 292 165 9 67 341 22 279 4.21e-16 80.9
Msa1276830 AT1G49760.1 29.766 299 161 12 61 340 124 392 1.09e-22 101
Msa1276830 AT1G49760.1 26.715 277 161 8 67 334 46 289 9.61e-20 92.4
Msa1276830 AT1G49760.1 27.072 181 113 3 67 229 225 404 4.53e-14 74.7
Msa1276830 AT1G49760.2 29.766 299 161 12 61 340 124 392 1.09e-22 101
Msa1276830 AT1G49760.2 26.715 277 161 8 67 334 46 289 9.61e-20 92.4
Msa1276830 AT1G49760.2 27.072 181 113 3 67 229 225 404 4.53e-14 74.7
Msa1276830 AT2G23350.1 29.964 277 163 8 67 332 135 391 1.15e-22 101
Msa1276830 AT2G23350.1 27.076 277 160 7 67 334 47 290 4.79e-19 90.1
Msa1276830 AT2G23350.1 25.668 187 120 4 61 229 220 405 1.18e-12 70.5
Msa1276830 AT1G22760.1 27.273 275 161 6 67 333 50 293 1.95e-22 100
Msa1276830 AT1G22760.1 26.733 303 179 8 61 348 127 401 3.05e-16 81.6
Msa1276830 AT1G22760.1 25.414 181 116 3 67 229 230 409 9.96e-13 70.5
Msa1276830 AT1G71770.1 25.275 273 169 6 67 333 60 303 5.10e-22 99.4
Msa1276830 AT1G71770.1 29.085 306 168 10 61 348 137 411 1.32e-18 89.0
Msa1276830 AT1G71770.1 25.263 190 119 4 67 238 240 424 8.22e-14 73.9
Msa1276830 AT1G71770.2 25.275 273 169 6 67 333 60 303 5.10e-22 99.4
Msa1276830 AT1G71770.2 29.085 306 168 10 61 348 137 411 1.32e-18 89.0
Msa1276830 AT1G71770.2 25.263 190 119 4 67 238 240 424 8.22e-14 73.9
Msa1276830 AT1G47490.2 32.571 175 106 6 66 228 101 275 9.66e-21 92.8
Msa1276830 AT2G36660.1 26.335 281 155 8 67 334 25 266 1.07e-18 89.0
Msa1276830 AT2G36660.1 25.632 277 177 8 67 334 113 369 4.72e-16 80.9
Msa1276830 AT1G47500.2 31.429 175 108 6 66 228 103 277 1.44e-18 86.7
Msa1276830 AT1G34140.1 26.708 322 201 8 61 366 22 324 2.02e-18 87.0
Msa1276830 AT4G24770.1 30.337 178 115 2 61 229 145 322 4.16e-17 82.4
Msa1276830 AT4G24770.2 30.337 178 115 2 61 229 145 322 4.16e-17 82.4
Msa1276830 AT3G52150.2 32.275 189 110 5 57 227 65 253 1.25e-16 79.7
Msa1276830 AT3G52150.2 30.256 195 111 7 153 343 78 251 5.65e-14 72.0
Msa1276830 AT3G52150.1 32.275 189 110 5 57 227 65 253 1.25e-16 79.7
Msa1276830 AT3G52150.1 30.256 195 111 7 153 343 78 251 5.65e-14 72.0
Msa1276830 AT2G37220.1 29.787 188 104 2 68 227 93 280 1.27e-16 80.5
Msa1276830 AT3G52380.1 26.068 234 137 6 153 376 118 325 6.92e-15 75.9
Msa1276830 AT3G52380.1 27.523 218 131 7 68 267 118 326 1.61e-13 71.6
Msa1276830 AT5G50250.1 30.726 179 114 3 59 227 105 283 7.46e-15 75.1
Msa1276830 AT3G23830.2 46.753 77 41 0 153 229 37 113 1.13e-14 71.2
Msa1276830 AT3G23830.1 46.753 77 41 0 153 229 37 113 1.13e-14 71.2
Msa1276830 AT4G13860.1 45.714 70 38 0 153 222 5 74 1.90e-14 68.9
Msa1276830 AT1G60000.1 30.000 180 104 5 54 227 90 253 3.82e-14 72.4
Msa1276830 AT4G13850.4 45.333 75 41 0 153 227 37 111 9.87e-14 68.2
Msa1276830 AT4G13850.3 45.205 73 40 0 153 225 37 109 1.37e-13 68.2
Msa1276830 AT4G13850.2 45.205 73 40 0 153 225 37 109 1.68e-13 68.2
Msa1276830 AT4G13850.1 45.205 73 40 0 153 225 37 109 1.88e-13 68.2
Msa1276830 AT3G04500.1 33.684 95 60 1 151 242 137 231 4.95e-13 68.9
Msa1276830 AT4G39260.3 39.286 84 50 1 151 233 6 89 5.01e-13 65.1
Msa1276830 AT5G04280.1 43.421 76 43 0 152 227 8 83 3.59e-12 67.4
Msa1276830 AT5G61030.2 41.333 75 44 0 153 227 42 116 3.90e-12 67.4
Msa1276830 AT5G61030.1 41.333 75 44 0 153 227 42 116 3.90e-12 67.4
Msa1276830 AT1G74230.1 44.156 77 42 1 153 229 36 111 8.74e-12 65.9
Msa1276830 AT3G53460.1 45.333 75 41 0 153 227 259 333 1.24e-11 66.2
Msa1276830 AT3G53460.3 45.333 75 41 0 153 227 259 333 1.24e-11 66.2
Msa1276830 AT3G53460.2 45.333 75 41 0 153 227 259 333 1.24e-11 66.2
Msa1276830 AT2G33410.1 28.902 173 96 5 68 215 8 178 1.50e-11 66.2
Msa1276830 AT3G53460.4 45.333 75 41 0 153 227 280 354 1.78e-11 65.9
Msa1276830 AT4G39260.2 38.961 77 47 0 151 227 6 82 2.14e-11 61.6
Msa1276830 AT1G58470.2 29.032 186 111 6 151 327 6 179 2.43e-11 65.5
Msa1276830 AT1G58470.1 29.032 186 111 6 151 327 6 179 2.43e-11 65.5
Msa1276830 AT4G14300.1 28.977 176 92 6 68 215 8 178 3.49e-11 65.1
Msa1276830 AT4G14300.2 28.977 176 92 6 68 215 8 178 3.49e-11 65.1
Msa1276830 AT3G08000.1 38.272 81 50 0 153 233 43 123 3.96e-11 61.2
Msa1276830 AT5G47320.1 41.333 75 44 0 153 227 33 107 8.06e-11 62.0

Find 146 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCACCATTTAATTTAAA+AGG 0.167469 8_3:-11725978 None:intergenic
TACAAATGTTTAATCTAATT+TGG 0.181298 8_3:-11726015 None:intergenic
CCTATCCGCAACAGATATTT+TGG 0.201236 8_3:+11725680 Msa1276830:CDS
CATCGTCATTTCCATGCTCT+TGG 0.280996 8_3:+11725212 Msa1276830:CDS
TCTCTGTGGCAAAATAATTA+AGG 0.291025 8_3:+11725349 Msa1276830:CDS
CCAATTGCAGCTTGCTTAAG+AGG 0.300686 8_3:-11725777 None:intergenic
GGCAACCTATCAAAGTTAAC+TGG 0.303964 8_3:+11723424 Msa1276830:CDS
CCTTCCATTGAGAGTTAATA+TGG 0.304042 8_3:-11723319 None:intergenic
GTCCAGCGTGATAAAGGATT+TGG 0.304987 8_3:+11725260 Msa1276830:CDS
ATCGTCATTTCCATGCTCTT+GGG 0.313391 8_3:+11725213 Msa1276830:CDS
ACTGGGCGATCAAGGGGATT+TGG 0.334423 8_3:+11723885 Msa1276830:CDS
AAAAGCTTACACCCTTCAAC+TGG 0.359205 8_3:-11723132 None:intergenic
AGCTGCAATTGGAGCTAGCC+AGG 0.366978 8_3:+11725788 Msa1276830:CDS
CCTCTTAAGCAAGCTGCAAT+TGG 0.368129 8_3:+11725777 Msa1276830:CDS
TATGCCCAGTTAACTTTGAT+AGG 0.370081 8_3:-11723429 None:intergenic
GTTCGTGTCCAGCGTGATAA+AGG 0.374267 8_3:+11725254 Msa1276830:CDS
CACACACTGCGGCAAGTACT+TGG 0.374575 8_3:-11722707 None:intergenic
AGAGGATTTGAAGCAGTTCC+AGG 0.379667 8_3:-11725627 None:intergenic
GTAGACAAATACGCTGCAAC+TGG 0.382099 8_3:+11724384 Msa1276830:CDS
TACTCATGCTGAGGCAGCTC+TGG 0.384996 8_3:+11725298 Msa1276830:CDS
CCTGCTGCTGCGCCTCTACC+AGG 0.385593 8_3:+11725657 Msa1276830:CDS
CATTTCCATGCTCTTGGGGC+TGG 0.386711 8_3:+11725218 Msa1276830:CDS
GCTGTGCAGCAGCAACATTT+TGG 0.387873 8_3:-11725830 None:intergenic
GTCTGTGCCTTTCAGGTAAG+TGG 0.392351 8_3:+11724354 Msa1276830:intron
GCGGGTACTGGCCCAGTTGA+AGG 0.395293 8_3:+11723120 Msa1276830:CDS
CCTGGTAGAGGCGCAGCAGC+AGG 0.402401 8_3:-11725657 None:intergenic
GAAATTTATTAGGGTTCAAA+GGG 0.405739 8_3:-11720574 None:intergenic
GGCCATTACAACATATTTGT+TGG 0.405771 8_3:+11723569 Msa1276830:intron
TGTTCAAATATAGTGCTCTT+GGG 0.408510 8_3:+11725587 Msa1276830:intron
ATAACAACAATAAGATATAT+AGG 0.409012 8_3:-11726180 None:intergenic
GTGTTCAAATATAGTGCTCT+TGG 0.414047 8_3:+11725586 Msa1276830:intron
GGCAAATTTCCACTTGGGAT+TGG 0.418426 8_3:-11722671 None:intergenic
GAGGAGTCTCTTTCTGTAAG+AGG 0.424281 8_3:+11720535 Msa1276830:five_prime_UTR
TGCCTTTCAGGTAAGTGGCT+TGG 0.427719 8_3:+11724359 Msa1276830:intron
CGATCGCAGATCTGCTGCTC+TGG 0.428701 8_3:+11723296 Msa1276830:CDS
AGAGGCGCAGCAGCAGGTGG+GGG 0.429003 8_3:-11725651 None:intergenic
GAACTAACAAATGGTTCATC+TGG 0.429816 8_3:+11724467 Msa1276830:CDS
TCCAGCGTGATAAAGGATTT+GGG 0.430462 8_3:+11725261 Msa1276830:CDS
TAGTAACAATAAAACCCAAA+TGG 0.431858 8_3:-11726123 None:intergenic
GGTAGAGGCGCAGCAGCAGG+TGG 0.433312 8_3:-11725654 None:intergenic
ATCAGAAGACTGGGCGATCA+AGG 0.435048 8_3:+11723877 Msa1276830:CDS
CCAAGTGGAAATTTGCCTCC+TGG 0.436571 8_3:+11722677 Msa1276830:CDS
CGCTGCAACTGGGCAACAAA+AGG 0.437840 8_3:+11724395 Msa1276830:CDS
TCAATACACAACTGTTTATG+TGG 0.446274 8_3:+11724792 Msa1276830:CDS
GTGTATTGAGGATTGTTCTC+AGG 0.448950 8_3:-11724778 None:intergenic
ACTGTTTATGTGGGTAACCT+TGG 0.450682 8_3:+11724802 Msa1276830:CDS
GGAAATTTATTAGGGTTCAA+AGG 0.453282 8_3:-11720575 None:intergenic
GGGAGCAAGCCCACTCCACC+TGG 0.463873 8_3:+11725609 Msa1276830:CDS
TTATTATTCTGCGCATTGGT+TGG 0.467531 8_3:+11725917 Msa1276830:three_prime_UTR
CTGTTTATGTGGGTAACCTT+GGG 0.467747 8_3:+11724803 Msa1276830:CDS
AGCTGAAAATGCAGAATCAT+AGG 0.468195 8_3:+11720629 Msa1276830:exon
TCTATTATTATTCTGCGCAT+TGG 0.472744 8_3:+11725913 Msa1276830:three_prime_UTR
GGTGTTAAAAGTAAAACTCT+AGG 0.478246 8_3:+11725938 Msa1276830:three_prime_UTR
CTGGCCATATTAACTCTCAA+TGG 0.478563 8_3:+11723315 Msa1276830:CDS
TGTTTAATCTAATTTGGTAG+TGG 0.485287 8_3:-11726009 None:intergenic
ACAACAAGCTATGATGCAAC+AGG 0.485502 8_3:+11720699 Msa1276830:CDS
GTTATGTGGGATCAGAAGAC+TGG 0.486448 8_3:+11723867 Msa1276830:CDS
AGTAACAATAAAACCCAAAT+GGG 0.490147 8_3:-11726122 None:intergenic
GTGGCTCGGTTACTTGTGTA+TGG 0.493557 8_3:-11723080 None:intergenic
ATGAAGCTTACGAACAACTT+TGG 0.494255 8_3:-11723646 None:intergenic
AACTTCTTGCAGAAGTGGCT+CGG 0.499016 8_3:-11723094 None:intergenic
GGTCAGAGAGAGGATACATC+AGG 0.501078 8_3:+11723459 Msa1276830:CDS
AACTGGGCAACAAAAGGTGC+TGG 0.502538 8_3:+11724401 Msa1276830:CDS
GGCAGCTCTGGCAATTCAGA+TGG 0.502691 8_3:+11725310 Msa1276830:CDS
CCAGGAGGCAAATTTCCACT+TGG 0.505891 8_3:-11722677 None:intergenic
TCTTGGGGCTGGTGTGATAG+AGG 0.507053 8_3:+11725229 Msa1276830:CDS
TGCCGACTATTCATAACAAA+AGG 0.507307 8_3:-11720477 None:intergenic
CACCAACAAATATGTTGTAA+TGG 0.507913 8_3:-11723571 None:intergenic
CGGGTACTGGCCCAGTTGAA+GGG 0.510220 8_3:+11723121 Msa1276830:CDS
CCAAAATATCTGTTGCGGAT+AGG 0.514090 8_3:-11725680 None:intergenic
TGTTTCATTCCGTAGCCAGC+AGG 0.516705 8_3:+11723911 Msa1276830:CDS
ACATAAACAGTTGTGTATTG+AGG 0.517017 8_3:-11724790 None:intergenic
ATATCTGTTGCGGATAGGCC+TGG 0.519370 8_3:-11725675 None:intergenic
TAGAGATGCAAGAGTTATGT+GGG 0.520268 8_3:+11723854 Msa1276830:intron
TTAGAGATGCAAGAGTTATG+TGG 0.526961 8_3:+11723853 Msa1276830:intron
TCAGAAGACTGGGCGATCAA+GGG 0.527570 8_3:+11723878 Msa1276830:CDS
TAGAGGCGCAGCAGCAGGTG+GGG 0.531472 8_3:-11725652 None:intergenic
TGTAAGAGGGTCACTGCGTA+GGG 0.532228 8_3:+11720549 Msa1276830:five_prime_UTR
CAGCTAGCAATGAGCAAGAT+GGG 0.532413 8_3:+11725714 Msa1276830:CDS
GAAGCAGTTCCAGGTGGAGT+GGG 0.535669 8_3:-11725618 None:intergenic
CAGGAGGCAAATTTCCACTT+GGG 0.537949 8_3:-11722676 None:intergenic
TGGTCTCTTAGCTCCACCTC+AGG 0.539491 8_3:+11720756 Msa1276830:CDS
GCAGCTAGCAATGAGCAAGA+TGG 0.547662 8_3:+11725713 Msa1276830:CDS
CTGTAAGAGGGTCACTGCGT+AGG 0.547670 8_3:+11720548 Msa1276830:five_prime_UTR
TCGTCATTTCCATGCTCTTG+GGG 0.548558 8_3:+11725214 Msa1276830:CDS
ACCCACCGTCGTATATCGCC+TGG 0.548862 8_3:-11725806 None:intergenic
TGAAGCAGTTCCAGGTGGAG+TGG 0.549578 8_3:-11725619 None:intergenic
GTTCAAATATAGTGCTCTTG+GGG 0.552630 8_3:+11725588 Msa1276830:intron
AGTGTGGTGGAACTAACAAA+TGG 0.554047 8_3:+11724458 Msa1276830:CDS
GTAGAGGCGCAGCAGCAGGT+GGG 0.554923 8_3:-11725653 None:intergenic
GTTGCGGATAGGCCTGGTAG+AGG 0.555251 8_3:-11725669 None:intergenic
TTGTTATGAATAGTCGGCAA+GGG 0.562966 8_3:+11720481 Msa1276830:five_prime_UTR
TGTATCCTCTCTCTGACCAC+TGG 0.563870 8_3:-11723454 None:intergenic
TTAAGAGGATGCTGTGCTTG+AGG 0.565759 8_3:-11725762 None:intergenic
TCACACCAGCCCCAAGAGCA+TGG 0.567987 8_3:-11725223 None:intergenic
TGTTGGTGACCTCAGTCCTG+AGG 0.574357 8_3:+11723586 Msa1276830:CDS
TGTGAGAAAATGCAGGTATG+TGG 0.574705 8_3:+11723050 Msa1276830:intron
CAGAAGACTGGGCGATCAAG+GGG 0.575925 8_3:+11723879 Msa1276830:CDS
GAATATGGACCAACCTGAGG+TGG 0.581351 8_3:-11720769 None:intergenic
TGTGGGTAACCTTGGGTCGG+AGG 0.581624 8_3:+11724810 Msa1276830:CDS
CCATATTAACTCTCAATGGA+AGG 0.584606 8_3:+11723319 Msa1276830:CDS
TGAGGTGGAGCTAAGAGACC+AGG 0.584784 8_3:-11720754 None:intergenic
AGTGCTATAAATGATTTGAC+CGG 0.585401 8_3:+11724029 Msa1276830:CDS
GCATGCGAAAAGTGTAGCAT+CGG 0.586459 8_3:-11723612 None:intergenic
AGTGTAGCATCGGTAACCTC+AGG 0.587772 8_3:-11723602 None:intergenic
AGGAGTCTCTTTCTGTAAGA+GGG 0.588380 8_3:+11720536 Msa1276830:five_prime_UTR
TTATGTGGGTAACCTTGGGT+CGG 0.588868 8_3:+11724807 Msa1276830:CDS
CAAGTACTTGGATCAAAACC+AGG 0.592915 8_3:-11722695 None:intergenic
ACCCAAATCCTTTATCACGC+TGG 0.596264 8_3:-11725262 None:intergenic
GTGTTAAAAGTAAAACTCTA+GGG 0.603841 8_3:+11725939 Msa1276830:three_prime_UTR
GCAGCTCTGGCAATTCAGAT+GGG 0.613986 8_3:+11725311 Msa1276830:CDS
CAGATTGAACCAATCCCAAG+TGG 0.614650 8_3:+11722662 Msa1276830:intron
TTTGCCACAGAGATAAGACT+GGG 0.619779 8_3:-11725339 None:intergenic
GGATTTGAAGCAGTTCCAGG+TGG 0.620256 8_3:-11725624 None:intergenic
GTATGCCAAAATATCTGTTG+CGG 0.625088 8_3:-11725685 None:intergenic
TAGACAAATACGCTGCAACT+GGG 0.625372 8_3:+11724385 Msa1276830:CDS
GCAACCTATCAAAGTTAACT+GGG 0.627335 8_3:+11723425 Msa1276830:CDS
CAATACACAACTGTTTATGT+GGG 0.627906 8_3:+11724793 Msa1276830:CDS
TTTCCAGTGAAAATTTCACT+AGG 0.629878 8_3:+11720593 Msa1276830:five_prime_UTR
CAAGAGCATGGAAATGACGA+TGG 0.630427 8_3:-11725211 None:intergenic
TTATGTGGGATCAGAAGACT+GGG 0.632262 8_3:+11723868 Msa1276830:CDS
CTCGGACAGTAAAAGTGTGG+TGG 0.632747 8_3:+11724445 Msa1276830:CDS
AGTTTCTTACCTCCGACCCA+AGG 0.634040 8_3:-11724819 None:intergenic
TTTGTTATGAATAGTCGGCA+AGG 0.636471 8_3:+11720480 Msa1276830:five_prime_UTR
TATTGAAGAGAAGCAAAACT+CGG 0.637066 8_3:+11724427 Msa1276830:CDS
AAAGCTTACACCCTTCAACT+GGG 0.638369 8_3:-11723131 None:intergenic
GTGAGAAAATGCAGGTATGT+GGG 0.639135 8_3:+11723051 Msa1276830:intron
GCCAGGCGATATACGACGGT+GGG 0.639764 8_3:+11725805 Msa1276830:CDS
ATATGCCAGTGGTCAGAGAG+AGG 0.645760 8_3:+11723449 Msa1276830:CDS
ATGAGTTTGTATCATGTATG+CGG 0.659413 8_3:+11726037 Msa1276830:three_prime_UTR
GAGATATAGTACTCATGCTG+AGG 0.660148 8_3:+11725289 Msa1276830:CDS
CTAGCAATGAGCAAGATGGG+TGG 0.664649 8_3:+11725717 Msa1276830:CDS
TGGGCAACAAAAGGTGCTGG+CGG 0.665006 8_3:+11724404 Msa1276830:CDS
TTCAAATATAGTGCTCTTGG+GGG 0.666129 8_3:+11725589 Msa1276830:intron
CAACAGTCTCTCTATCACCC+TGG 0.675382 8_3:+11720736 Msa1276830:CDS
AAACTCGGACAGTAAAAGTG+TGG 0.685436 8_3:+11724442 Msa1276830:CDS
CTCCTCTGAGAAAATACCAG+AGG 0.686802 8_3:-11720518 None:intergenic
CATCGGTAACCTCAGGACTG+AGG 0.688396 8_3:-11723595 None:intergenic
GAGGTGGAGCTAAGAGACCA+GGG 0.691045 8_3:-11720753 None:intergenic
GTTAACTGGGCATATGCCAG+TGG 0.699312 8_3:+11723438 Msa1276830:CDS
AATGCCCAGTCTTATCTCTG+TGG 0.700945 8_3:+11725335 Msa1276830:CDS
AGCCAGGCGATATACGACGG+TGG 0.723213 8_3:+11725804 Msa1276830:CDS
AAATTTATTAGGGTTCAAAG+GGG 0.735571 8_3:-11720573 None:intergenic
GCTAGCCAGGCGATATACGA+CGG 0.738610 8_3:+11725801 Msa1276830:CDS
TAGACAAAACTCACACACTG+CGG 0.742849 8_3:-11722718 None:intergenic
GTACTTGGATCAAAACCAGG+AGG 0.749205 8_3:-11722692 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATTTAATAAGAAAATT+GGG + chr8_3:11720925-11720944 Msa1276830:intron 10.0%
!!! AAAAAATTGAATTTTTTTAG+TGG + chr8_3:11720987-11721006 Msa1276830:intron 10.0%
!!! AAAAATTGAATTTTTTTAGT+GGG + chr8_3:11720988-11721007 Msa1276830:intron 10.0%
!!! AAAATTGATTTTTTATTTAG+TGG + chr8_3:11721029-11721048 Msa1276830:intron 10.0%
!!! AAATTGATTTTTTATTTAGT+GGG + chr8_3:11721030-11721049 Msa1276830:intron 10.0%
!!! AAAAAAATTGAATTTTATAG+TGG + chr8_3:11721110-11721129 Msa1276830:intron 10.0%
!!! AAAAAATTGAATTTTATAGT+GGG + chr8_3:11721111-11721130 Msa1276830:intron 10.0%
!! TTAATTCATACAAAAAATAA+TGG - chr8_3:11721188-11721207 None:intergenic 10.0%
!!! ATTATTTTTTGTATGAATTA+AGG + chr8_3:11721187-11721206 Msa1276830:intron 10.0%
!!! CTTTTAAAATAATTAAACAT+AGG - chr8_3:11724216-11724235 None:intergenic 10.0%
!! CTTCAATTTAATAAGAAAAT+TGG + chr8_3:11720924-11720943 Msa1276830:intron 15.0%
!! TCAATTTAATAAGAAAATTG+GGG + chr8_3:11720926-11720945 Msa1276830:intron 15.0%
!!! TGATGAAAAAAATTGAATTT+TGG + chr8_3:11721144-11721163 Msa1276830:intron 15.0%
!! ATAACATTTAGATTCATAAA+GGG - chr8_3:11721978-11721997 None:intergenic 15.0%
!! AATAACATTTAGATTCATAA+AGG - chr8_3:11721979-11721998 None:intergenic 15.0%
!! AATCATAAAACAAAAGAAAA+GGG - chr8_3:11722782-11722801 None:intergenic 15.0%
!!! TATTTTTACTAAGAAATCAT+AGG - chr8_3:11723675-11723694 None:intergenic 15.0%
!! AATCTTCATTTATTCAAAAT+GGG + chr8_3:11723725-11723744 Msa1276830:intron 15.0%
!!! TAAAATCTTAATTTGTGTTT+TGG + chr8_3:11723947-11723966 Msa1276830:intron 15.0%
!!! AAAATCTTAATTTGTGTTTT+GGG + chr8_3:11723948-11723967 Msa1276830:intron 15.0%
!!! TATATTTTTTGTCATTTTGT+AGG + chr8_3:11723998-11724017 Msa1276830:intron 15.0%
!! TAATTGGCTAAAATAAAATA+AGG - chr8_3:11724081-11724100 None:intergenic 15.0%
!!! TATTTTAGCCAATTATAATT+TGG + chr8_3:11724086-11724105 Msa1276830:intron 15.0%
!! TATGCTGAAAAAAAATATAT+AGG - chr8_3:11724256-11724275 None:intergenic 15.0%
!!! TATATCTATTTTTCAATCTA+TGG + chr8_3:11724847-11724866 Msa1276830:intron 15.0%
!! ATAAAACAAAAAGCTAAAAT+AGG - chr8_3:11724996-11725015 None:intergenic 15.0%
!! ACATATATTGTAAAATCAAA+AGG - chr8_3:11725082-11725101 None:intergenic 15.0%
!!! CTTTTTCCTTTTAAATTAAA+TGG + chr8_3:11725972-11725991 Msa1276830:three_prime_UTR 15.0%
!! TACAAATGTTTAATCTAATT+TGG - chr8_3:11726018-11726037 None:intergenic 15.0%
!! ATAACAACAATAAGATATAT+AGG - chr8_3:11726183-11726202 None:intergenic 15.0%
!!! TTTTCACTGGAAATTTATTA+GGG - chr8_3:11720586-11720605 None:intergenic 20.0%
!!! ATTTTCACTGGAAATTTATT+AGG - chr8_3:11720587-11720606 None:intergenic 20.0%
!!! TTGCACATTTTTTGTTTATT+AGG + chr8_3:11720845-11720864 Msa1276830:intron 20.0%
!!! TGCACATTTTTTGTTTATTA+GGG + chr8_3:11720846-11720865 Msa1276830:intron 20.0%
!!! AATTTTTTTTAGTGGGTATT+TGG + chr8_3:11721077-11721096 Msa1276830:intron 20.0%
!!! TCATACAAAAAATAATGGAA+TGG - chr8_3:11721183-11721202 None:intergenic 20.0%
!!! ATTAAGGTTGTTAATTTTTC+TGG + chr8_3:11721203-11721222 Msa1276830:intron 20.0%
!!! TTAAGGTTGTTAATTTTTCT+GGG + chr8_3:11721204-11721223 Msa1276830:intron 20.0%
!!! AATTTTTTACCTTTTTGTGT+TGG + chr8_3:11721457-11721476 Msa1276830:intron 20.0%
!! ATAAGTTTGCAATTGATATA+TGG + chr8_3:11721489-11721508 Msa1276830:intron 20.0%
!! TCACAAATGAAACTAAAATT+GGG - chr8_3:11721691-11721710 None:intergenic 20.0%
!! ATCACAAATGAAACTAAAAT+TGG - chr8_3:11721692-11721711 None:intergenic 20.0%
!! AAAATAGTTCAGTACTTTAA+AGG - chr8_3:11721888-11721907 None:intergenic 20.0%
!! ATGAATCTAAATGTTATTAG+AGG + chr8_3:11721981-11722000 Msa1276830:intron 20.0%
!!! CATTTTCATTTTCTTCTATT+AGG + chr8_3:11722439-11722458 Msa1276830:intron 20.0%
!!! TTTTTTGTCTGTTATTGTTT+TGG + chr8_3:11722487-11722506 Msa1276830:intron 20.0%
!! ACAAATATTCAATCTTGATT+TGG + chr8_3:11722581-11722600 Msa1276830:intron 20.0%
!! AGAAAAGATGAAAAGAAAAA+GGG - chr8_3:11722608-11722627 None:intergenic 20.0%
!! AAGAAAAGATGAAAAGAAAA+AGG - chr8_3:11722609-11722628 None:intergenic 20.0%
!! AAGGTAAAAAAGAAGAAAAA+AGG - chr8_3:11722633-11722652 None:intergenic 20.0%
!! GATCAATAAGATTGAATAAA+AGG - chr8_3:11722755-11722774 None:intergenic 20.0%
!! CAATCATAAAACAAAAGAAA+AGG - chr8_3:11722783-11722802 None:intergenic 20.0%
!! TTGCAAGATATAATAAACTT+AGG - chr8_3:11722896-11722915 None:intergenic 20.0%
!!! ATGTTTTGAACAAATCATTT+TGG + chr8_3:11723510-11723529 Msa1276830:intron 20.0%
!!! ATATGTTTCTTTGAATTTTC+AGG + chr8_3:11723548-11723567 Msa1276830:intron 20.0%
!!! TAGCATCCATTTTATATATT+TGG + chr8_3:11723693-11723712 Msa1276830:intron 20.0%
!! CCAATTCCAAATATATAAAA+TGG - chr8_3:11723702-11723721 None:intergenic 20.0%
!!! CCATTTTATATATTTGGAAT+TGG + chr8_3:11723699-11723718 Msa1276830:intron 20.0%
!! CAATCTTCATTTATTCAAAA+TGG + chr8_3:11723724-11723743 Msa1276830:intron 20.0%
!! TTATTCCATATATGTGATAA+TGG + chr8_3:11723762-11723781 Msa1276830:intron 20.0%
!!! AAATCTTAATTTGTGTTTTG+GGG + chr8_3:11723949-11723968 Msa1276830:intron 20.0%
!!! AGACTTTTCCAAATTATAAT+TGG - chr8_3:11724097-11724116 None:intergenic 20.0%
!! ATTTACTAACGAAAAATCAA+TGG - chr8_3:11724120-11724139 None:intergenic 20.0%
!! TTTCGATTTAAAAATAGATC+TGG + chr8_3:11724565-11724584 Msa1276830:intron 20.0%
!! TTCGATTTAAAAATAGATCT+GGG + chr8_3:11724566-11724585 Msa1276830:intron 20.0%
!! TTAATCACCTAAAAATCATT+AGG - chr8_3:11724630-11724649 None:intergenic 20.0%
!! TTAATACATCTCTAACATAA+TGG - chr8_3:11725037-11725056 None:intergenic 20.0%
!! CTTTATTCATGAATTTGATT+TGG + chr8_3:11725535-11725554 Msa1276830:intron 20.0%
!!! TTTCCTTTTAAATTAAATGG+TGG + chr8_3:11725975-11725994 Msa1276830:three_prime_UTR 20.0%
!!! TACCTTTTGTTATGAATAGT+CGG + chr8_3:11720475-11720494 Msa1276830:five_prime_UTR 25.0%
! AAATTTATTAGGGTTCAAAG+GGG - chr8_3:11720576-11720595 None:intergenic 25.0%
! GAAATTTATTAGGGTTCAAA+GGG - chr8_3:11720577-11720596 None:intergenic 25.0%
! TAATAAGAAAATTGGGGTAA+TGG + chr8_3:11720932-11720951 Msa1276830:intron 25.0%
! AATAAGAAAATTGGGGTAAT+GGG + chr8_3:11720933-11720952 Msa1276830:intron 25.0%
!!! TAATGGGTTTGATTTTTAGT+GGG + chr8_3:11720949-11720968 Msa1276830:intron 25.0%
!!! ATTTTTTATTTAGTGGGTGT+TGG + chr8_3:11721036-11721055 Msa1276830:intron 25.0%
!!! TTTTTTATTTAGTGGGTGTT+GGG + chr8_3:11721037-11721056 Msa1276830:intron 25.0%
! TATATATATGAAAGCTCACT+TGG + chr8_3:11721330-11721349 Msa1276830:intron 25.0%
! CATCATATTACTAAATAGAC+TGG - chr8_3:11721395-11721414 None:intergenic 25.0%
! GTCTATTTAGTAATATGATG+TGG + chr8_3:11721395-11721414 Msa1276830:intron 25.0%
! ATTTAGTAATATGATGTGGT+TGG + chr8_3:11721399-11721418 Msa1276830:intron 25.0%
!!! TTTAGTTTGTATTCAAACTG+TGG + chr8_3:11721638-11721657 Msa1276830:intron 25.0%
! TTTCATTTGTGATTAACATG+CGG + chr8_3:11721699-11721718 Msa1276830:intron 25.0%
!!! TTTTTGAGTGGAAAGTAAAA+GGG + chr8_3:11722196-11722215 Msa1276830:intron 25.0%
!!! TATTTTAGATAACTTGTCCT+TGG + chr8_3:11722227-11722246 Msa1276830:intron 25.0%
!!! ATTTTAGATAACTTGTCCTT+GGG + chr8_3:11722228-11722247 Msa1276830:intron 25.0%
! AGGAAAAACAAAAATCCTAT+GGG - chr8_3:11722361-11722380 None:intergenic 25.0%
! TAGGAAAAACAAAAATCCTA+TGG - chr8_3:11722362-11722381 None:intergenic 25.0%
! GAAAAGATGAAAAGAAAAAG+GGG - chr8_3:11722607-11722626 None:intergenic 25.0%
! AAGAGAAGAAACAAACAATT+AGG - chr8_3:11723003-11723022 None:intergenic 25.0%
! AGTTCTTCTATAATTGTGTT+AGG + chr8_3:11723355-11723374 Msa1276830:intron 25.0%
!! ATAATTGTGTTAGGTTAGTT+TGG + chr8_3:11723364-11723383 Msa1276830:intron 25.0%
!! AATTCAATGGTTTGTAGATT+CGG + chr8_3:11723402-11723421 Msa1276830:intron 25.0%
!! CACTAACTTTATCTTTTTGA+TGG + chr8_3:11723828-11723847 Msa1276830:intron 25.0%
!! ATTATTTTCACTTATGATCG+AGG + chr8_3:11724317-11724336 Msa1276830:intron 25.0%
! TATTATTGTTTCAGGAACTA+CGG - chr8_3:11724506-11724525 None:intergenic 25.0%
! TTCCTGAAACAATAATAGAA+TGG + chr8_3:11724509-11724528 Msa1276830:intron 25.0%
! AACCATTCTATTATTGTTTC+AGG - chr8_3:11724514-11724533 None:intergenic 25.0%
! TCGATTTAAAAATAGATCTG+GGG + chr8_3:11724567-11724586 Msa1276830:intron 25.0%
!!! AATAATGTTTTGAAACCCAT+TGG + chr8_3:11724943-11724962 Msa1276830:intron 25.0%
!! AGGAATACAAATATTGGTTA+TGG - chr8_3:11724970-11724989 None:intergenic 25.0%
! TTTATTCTCCATTTCTACTT+TGG + chr8_3:11725011-11725030 Msa1276830:intron 25.0%
! AAAGGTCGTAATGATTAAAA+TGG - chr8_3:11725161-11725180 None:intergenic 25.0%
!!! ATTTTAATCATTACGACCTT+TGG + chr8_3:11725160-11725179 Msa1276830:intron 25.0%
! GTGTTAAAAGTAAAACTCTA+GGG + chr8_3:11725939-11725958 Msa1276830:three_prime_UTR 25.0%
!! TCACCACCATTTAATTTAAA+AGG - chr8_3:11725981-11726000 None:intergenic 25.0%
!!! TTTTAAATTAAATGGTGGTG+AGG + chr8_3:11725980-11725999 Msa1276830:three_prime_UTR 25.0%
! TGTTTAATCTAATTTGGTAG+TGG - chr8_3:11726012-11726031 None:intergenic 25.0%
! AGTAACAATAAAACCCAAAT+GGG - chr8_3:11726125-11726144 None:intergenic 25.0%
! TAGTAACAATAAAACCCAAA+TGG - chr8_3:11726126-11726145 None:intergenic 25.0%
GGAAATTTATTAGGGTTCAA+AGG - chr8_3:11720578-11720597 None:intergenic 30.0%
TTTCCAGTGAAAATTTCACT+AGG + chr8_3:11720593-11720612 Msa1276830:five_prime_UTR 30.0%
!!! GTAATGGGTTTGATTTTTAG+TGG + chr8_3:11720948-11720967 Msa1276830:intron 30.0%
!!! TTTGATTTTTAGTGGGTGTT+TGG + chr8_3:11720956-11720975 Msa1276830:intron 30.0%
!!! GAATTTTTTTAGTGGGTGTT+TGG + chr8_3:11720995-11721014 Msa1276830:intron 30.0%
!!! TGAATTTTATAGTGGGTAGT+TGG + chr8_3:11721118-11721137 Msa1276830:intron 30.0%
!!! GGTAAAGAAGCATTTTTTGT+AGG + chr8_3:11721351-11721370 Msa1276830:intron 30.0%
ATATGGTATTGTTTCCTTTG+AGG + chr8_3:11721506-11721525 Msa1276830:intron 30.0%
AAGAAAACAAAACTCCTATC+TGG - chr8_3:11721608-11721627 None:intergenic 30.0%
AACCCGATTAAGTCATATTA+GGG + chr8_3:11721802-11721821 Msa1276830:intron 30.0%
! TTTCCCTTTTGCAAATCAAA+CGG - chr8_3:11721829-11721848 None:intergenic 30.0%
!!! GTTTTTGAGTGGAAAGTAAA+AGG + chr8_3:11722195-11722214 Msa1276830:intron 30.0%
!!! TGGAAAGTAAAAGGGTATTT+TGG + chr8_3:11722204-11722223 Msa1276830:intron 30.0%
!! GTTTGATTTGCAGAAAGTAA+GGG - chr8_3:11722335-11722354 None:intergenic 30.0%
!! TGTTTGATTTGCAGAAAGTA+AGG - chr8_3:11722336-11722355 None:intergenic 30.0%
ACAAACTAAACTACAACAGT+AGG - chr8_3:11722381-11722400 None:intergenic 30.0%
!! TTTAGTTTGTATTCGAACTG+TGG + chr8_3:11722391-11722410 Msa1276830:intron 30.0%
AGAAAATGAAAATGAGTCCA+GGG - chr8_3:11722433-11722452 None:intergenic 30.0%
AAGAAAATGAAAATGAGTCC+AGG - chr8_3:11722434-11722453 None:intergenic 30.0%
AACATTAACTAGAGTGAATG+GGG - chr8_3:11722530-11722549 None:intergenic 30.0%
GAACATTAACTAGAGTGAAT+GGG - chr8_3:11722531-11722550 None:intergenic 30.0%
TATCAATACAGTATAGCATG+AGG - chr8_3:11722553-11722572 None:intergenic 30.0%
CAAGAAGTAACATACAGTAA+TGG - chr8_3:11722947-11722966 None:intergenic 30.0%
!! TAAGCTTTTTAGGAAAGAGA+AGG + chr8_3:11723146-11723165 Msa1276830:CDS 30.0%
TTACACTCAGTTCAATTCAA+TGG + chr8_3:11723389-11723408 Msa1276830:intron 30.0%
! ATTCAATGGTTTGTAGATTC+GGG + chr8_3:11723403-11723422 Msa1276830:intron 30.0%
CACCAACAAATATGTTGTAA+TGG - chr8_3:11723574-11723593 None:intergenic 30.0%
ATGCACCATTATCACATATA+TGG - chr8_3:11723770-11723789 None:intergenic 30.0%
TGCATACTAAACAACTTTGT+TGG + chr8_3:11723790-11723809 Msa1276830:intron 30.0%
AGTGCTATAAATGATTTGAC+CGG + chr8_3:11724029-11724048 Msa1276830:CDS 30.0%
!!! CTGAGAATATGGTTTTGTTT+CGG - chr8_3:11724144-11724163 None:intergenic 30.0%
AAACCATATTCTCAGTTCAA+AGG + chr8_3:11724149-11724168 Msa1276830:intron 30.0%
!!! TTTTTCAGCATATTGACTTC+TGG + chr8_3:11724264-11724283 Msa1276830:intron 30.0%
TATTGAAGAGAAGCAAAACT+CGG + chr8_3:11724427-11724446 Msa1276830:CDS 30.0%
CGATTTAAAAATAGATCTGG+GGG + chr8_3:11724568-11724587 Msa1276830:intron 30.0%
CCTAAAAATCATTAGGTCAA+GGG - chr8_3:11724623-11724642 None:intergenic 30.0%
ACCTAAAAATCATTAGGTCA+AGG - chr8_3:11724624-11724643 None:intergenic 30.0%
!! AAACACTTTTTATCCTACAG+AGG + chr8_3:11724726-11724745 Msa1276830:intron 30.0%
ACATAAACAGTTGTGTATTG+AGG - chr8_3:11724793-11724812 None:intergenic 30.0%
TCAATACACAACTGTTTATG+TGG + chr8_3:11724792-11724811 Msa1276830:CDS 30.0%
CAATACACAACTGTTTATGT+GGG + chr8_3:11724793-11724812 Msa1276830:CDS 30.0%
TTTGAACAAAACAGTTCATC+TGG + chr8_3:11724870-11724889 Msa1276830:intron 30.0%
TAAGCTTGGAAAATCATCAA+TGG - chr8_3:11724903-11724922 None:intergenic 30.0%
GCATCATAGAATAATAAGCT+TGG - chr8_3:11724917-11724936 None:intergenic 30.0%
! AATATTGGTTATGGACCAAT+GGG - chr8_3:11724961-11724980 None:intergenic 30.0%
! AAATATTGGTTATGGACCAA+TGG - chr8_3:11724962-11724981 None:intergenic 30.0%
AGGTGAAGGAATACAAATAT+TGG - chr8_3:11724976-11724995 None:intergenic 30.0%
CAAAAAGCTAAAATAGGTGA+AGG - chr8_3:11724990-11725009 None:intergenic 30.0%
TCTCTGTGGCAAAATAATTA+AGG + chr8_3:11725349-11725368 Msa1276830:CDS 30.0%
TTTATGCTGAATATTGTGTG+AGG + chr8_3:11725439-11725458 Msa1276830:intron 30.0%
TTGAACACAATAATAGTCAG+AGG - chr8_3:11725574-11725593 None:intergenic 30.0%
TGTTCAAATATAGTGCTCTT+GGG + chr8_3:11725587-11725606 Msa1276830:intron 30.0%
TCTATTATTATTCTGCGCAT+TGG + chr8_3:11725913-11725932 Msa1276830:three_prime_UTR 30.0%
GGTGTTAAAAGTAAAACTCT+AGG + chr8_3:11725938-11725957 Msa1276830:three_prime_UTR 30.0%
ATGAGTTTGTATCATGTATG+CGG + chr8_3:11726037-11726056 Msa1276830:three_prime_UTR 30.0%
! TGCCGACTATTCATAACAAA+AGG - chr8_3:11720480-11720499 None:intergenic 35.0%
! TTTGTTATGAATAGTCGGCA+AGG + chr8_3:11720480-11720499 Msa1276830:five_prime_UTR 35.0%
TTGTTATGAATAGTCGGCAA+GGG + chr8_3:11720481-11720500 Msa1276830:five_prime_UTR 35.0%
! CTTCCTAGTGAAATTTTCAC+TGG - chr8_3:11720599-11720618 None:intergenic 35.0%
AGCTGAAAATGCAGAATCAT+AGG + chr8_3:11720629-11720648 Msa1276830:exon 35.0%
CGAAGAAATGGAGATGAATA+TGG - chr8_3:11720787-11720806 None:intergenic 35.0%
AGAGAAGATGATCGAAGAAA+TGG - chr8_3:11720799-11720818 None:intergenic 35.0%
! TGGGTTTTCATCAATTGAGT+AGG + chr8_3:11721223-11721242 Msa1276830:intron 35.0%
! GGGTTTTCATCAATTGAGTA+GGG + chr8_3:11721224-11721243 Msa1276830:intron 35.0%
! GGTTTTCATCAATTGAGTAG+GGG + chr8_3:11721225-11721244 Msa1276830:intron 35.0%
! TGTGTGTTTGAAGTGAGAAA+TGG + chr8_3:11721277-11721296 Msa1276830:intron 35.0%
!! GGTTGGTGTTAATGTAACTA+TGG + chr8_3:11721416-11721435 Msa1276830:intron 35.0%
ACACTAATGCCAACACAAAA+AGG - chr8_3:11721469-11721488 None:intergenic 35.0%
!! TGTTTCCTTTGAGGTTTAGT+TGG + chr8_3:11721515-11721534 Msa1276830:intron 35.0%
!! GTTTCCTTTGAGGTTTAGTT+GGG + chr8_3:11721516-11721535 Msa1276830:intron 35.0%
! TGAATTTGACTTAGCCAGAT+AGG + chr8_3:11721591-11721610 Msa1276830:intron 35.0%
TGTTTCCTTGGAGGTTTAAT+TGG + chr8_3:11721725-11721744 Msa1276830:intron 35.0%
GTTTCCTTGGAGGTTTAATT+GGG + chr8_3:11721726-11721745 Msa1276830:intron 35.0%
ATTTCCCAATTAAACCTCCA+AGG - chr8_3:11721733-11721752 None:intergenic 35.0%
AATTGGGAAATGAATCTGCA+TGG + chr8_3:11721742-11721761 Msa1276830:intron 35.0%
GAAATGAATCTGCATGGTTT+AGG + chr8_3:11721748-11721767 Msa1276830:intron 35.0%
GAACCCGATTAAGTCATATT+AGG + chr8_3:11721801-11721820 Msa1276830:intron 35.0%
GACCCTAATATGACTTAATC+GGG - chr8_3:11721807-11721826 None:intergenic 35.0%
GGACCCTAATATGACTTAAT+CGG - chr8_3:11721808-11721827 None:intergenic 35.0%
! ATTTGCAAAAGGGAAAGTAC+CGG + chr8_3:11721833-11721852 Msa1276830:intron 35.0%
! TTGTCCTGTTCGATTTTTGA+TGG + chr8_3:11721908-11721927 Msa1276830:intron 35.0%
TTGTCCATCAAAAATCGAAC+AGG - chr8_3:11721915-11721934 None:intergenic 35.0%
!! GTTCGATTTTTGATGGACAA+TGG + chr8_3:11721915-11721934 Msa1276830:intron 35.0%
AGAAAGAGATTGTAGAGAGT+CGG + chr8_3:11722004-11722023 Msa1276830:intron 35.0%
TATGAGAGAGTGAAAATACG+AGG + chr8_3:11722164-11722183 Msa1276830:intron 35.0%
ATGAGAGAGTGAAAATACGA+GGG + chr8_3:11722165-11722184 Msa1276830:intron 35.0%
GGAACATTAACTAGAGTGAA+TGG - chr8_3:11722532-11722551 None:intergenic 35.0%
GTTCAATCTGCAAAACGAAA+AGG - chr8_3:11722652-11722671 None:intergenic 35.0%
TATGATTGTGAGACAAGCTT+AGG + chr8_3:11722795-11722814 Msa1276830:intron 35.0%
ATGGTTTAATGCAACAGAAC+TGG - chr8_3:11722928-11722947 None:intergenic 35.0%
CTTTATCTGTGAGAAAATGC+AGG + chr8_3:11723043-11723062 Msa1276830:intron 35.0%
! ACTTCTGCAAGAAGTTTTTG+CGG + chr8_3:11723101-11723120 Msa1276830:CDS 35.0%
!! TTGAAGGGTGTAAGCTTTTT+AGG + chr8_3:11723136-11723155 Msa1276830:CDS 35.0%
! TCTCTTTTGCAGTCATCTTA+TGG + chr8_3:11723258-11723277 Msa1276830:intron 35.0%
CCTTCCATTGAGAGTTAATA+TGG - chr8_3:11723322-11723341 None:intergenic 35.0%
CCATATTAACTCTCAATGGA+AGG + chr8_3:11723319-11723338 Msa1276830:CDS 35.0%
GCAACCTATCAAAGTTAACT+GGG + chr8_3:11723425-11723444 Msa1276830:CDS 35.0%
TATGCCCAGTTAACTTTGAT+AGG - chr8_3:11723432-11723451 None:intergenic 35.0%
GGCCATTACAACATATTTGT+TGG + chr8_3:11723569-11723588 Msa1276830:intron 35.0%
ATGAAGCTTACGAACAACTT+TGG - chr8_3:11723649-11723668 None:intergenic 35.0%
!! AAACAACTTTGTTGGTGACT+TGG + chr8_3:11723798-11723817 Msa1276830:intron 35.0%
TTAGAGATGCAAGAGTTATG+TGG + chr8_3:11723853-11723872 Msa1276830:intron 35.0%
TAGAGATGCAAGAGTTATGT+GGG + chr8_3:11723854-11723873 Msa1276830:intron 35.0%
TAAGACAAAAATAGACCTGC+TGG - chr8_3:11723929-11723948 None:intergenic 35.0%
GTCAATGACAAGTTTCTTAC+CGG - chr8_3:11724051-11724070 None:intergenic 35.0%
ACTCCTTTGAACTGAGAATA+TGG - chr8_3:11724155-11724174 None:intergenic 35.0%
GAACTAACAAATGGTTCATC+TGG + chr8_3:11724467-11724486 Msa1276830:CDS 35.0%
ATTAGGTCAAGGGTAAAAAG+AGG - chr8_3:11724613-11724632 None:intergenic 35.0%
! CCCTTGACCTAATGATTTTT+AGG + chr8_3:11724620-11724639 Msa1276830:intron 35.0%
CTGTTGTCTTAGTTAACAGA+TGG + chr8_3:11724682-11724701 Msa1276830:intron 35.0%
! ACTTTTTATCCTACAGAGGA+CGG + chr8_3:11724730-11724749 Msa1276830:intron 35.0%
CATAATGGCCAAAGTAGAAA+TGG - chr8_3:11725022-11725041 None:intergenic 35.0%
!! CTGTATCTTTGAAATCTGTG+CGG + chr8_3:11725123-11725142 Msa1276830:intron 35.0%
AAGCATGTCAATTGTCAATG+TGG - chr8_3:11725478-11725497 None:intergenic 35.0%
ATAGTCAGAGGCAATAAGAT+CGG - chr8_3:11725562-11725581 None:intergenic 35.0%
GTGTTCAAATATAGTGCTCT+TGG + chr8_3:11725586-11725605 Msa1276830:intron 35.0%
GTTCAAATATAGTGCTCTTG+GGG + chr8_3:11725588-11725607 Msa1276830:intron 35.0%
TTCAAATATAGTGCTCTTGG+GGG + chr8_3:11725589-11725608 Msa1276830:intron 35.0%
GTATGCCAAAATATCTGTTG+CGG - chr8_3:11725688-11725707 None:intergenic 35.0%
! TTATTATTCTGCGCATTGGT+TGG + chr8_3:11725917-11725936 Msa1276830:three_prime_UTR 35.0%
! ATGTTTTCATCTCACCCATT+TGG + chr8_3:11726108-11726127 Msa1276830:three_prime_UTR 35.0%
! TGTTTTCATCTCACCCATTT+GGG + chr8_3:11726109-11726128 Msa1276830:three_prime_UTR 35.0%
AGGAGTCTCTTTCTGTAAGA+GGG + chr8_3:11720536-11720555 Msa1276830:five_prime_UTR 40.0%
ACAACAAGCTATGATGCAAC+AGG + chr8_3:11720699-11720718 Msa1276830:CDS 40.0%
GCTACATAGTACAAAACCCT+AGG - chr8_3:11720885-11720904 None:intergenic 40.0%
!!! AGTGGGTATTTGGCTTTTGA+TGG + chr8_3:11721087-11721106 Msa1276830:intron 40.0%
CTTTCCCAACTAAACCTCAA+AGG - chr8_3:11721523-11721542 None:intergenic 40.0%
!! CTTTGAGGTTTAGTTGGGAA+AGG + chr8_3:11721521-11721540 Msa1276830:intron 40.0%
ACATTAACTCGTAAGCCATG+CGG - chr8_3:11721550-11721569 None:intergenic 40.0%
ATGGCTTACGAGTTAATGTC+TGG + chr8_3:11721551-11721570 Msa1276830:intron 40.0%
AACATGCGGTATTGTTTCCT+TGG + chr8_3:11721713-11721732 Msa1276830:intron 40.0%
!! GGTCCGTTTGATTTGCAAAA+GGG + chr8_3:11721823-11721842 Msa1276830:intron 40.0%
! ACTGTTTGTACCGTTTTGTC+CGG - chr8_3:11721855-11721874 None:intergenic 40.0%
GAAAGAGATTGTAGAGAGTC+GGG + chr8_3:11722005-11722024 Msa1276830:intron 40.0%
AAAGAGATTGTAGAGAGTCG+GGG + chr8_3:11722006-11722025 Msa1276830:intron 40.0%
AGAGAGAGAGAGAGAGATAA+AGG + chr8_3:11722101-11722120 Msa1276830:intron 40.0%
GAGAGAGAGAGAGAGATAAA+GGG + chr8_3:11722102-11722121 Msa1276830:intron 40.0%
AGAGAGAGAGAGAGATAAAG+GGG + chr8_3:11722103-11722122 Msa1276830:intron 40.0%
!! AGGGAGAGAATGTTTTTGAG+TGG + chr8_3:11722184-11722203 Msa1276830:intron 40.0%
ATTTGCAGAAAGTAAGGGAC+TGG - chr8_3:11722330-11722349 None:intergenic 40.0%
TGCAAATCAAACACACCCAT+AGG + chr8_3:11722343-11722362 Msa1276830:intron 40.0%
GTTTGTATTCGAACTGTGGA+TGG + chr8_3:11722395-11722414 Msa1276830:intron 40.0%
CAAGTACTTGGATCAAAACC+AGG - chr8_3:11722698-11722717 None:intergenic 40.0%
TAGACAAAACTCACACACTG+CGG - chr8_3:11722721-11722740 None:intergenic 40.0%
TGTGAGAAAATGCAGGTATG+TGG + chr8_3:11723050-11723069 Msa1276830:intron 40.0%
GTGAGAAAATGCAGGTATGT+GGG + chr8_3:11723051-11723070 Msa1276830:intron 40.0%
GCAAAAACTTCTTGCAGAAG+TGG - chr8_3:11723102-11723121 None:intergenic 40.0%
! CTTCTGCAAGAAGTTTTTGC+GGG + chr8_3:11723102-11723121 Msa1276830:CDS 40.0%
AAAGCTTACACCCTTCAACT+GGG - chr8_3:11723134-11723153 None:intergenic 40.0%
AAAAGCTTACACCCTTCAAC+TGG - chr8_3:11723135-11723154 None:intergenic 40.0%
CTGGCCATATTAACTCTCAA+TGG + chr8_3:11723315-11723334 Msa1276830:CDS 40.0%
GGCAACCTATCAAAGTTAAC+TGG + chr8_3:11723424-11723443 Msa1276830:CDS 40.0%
TTATGTGGGATCAGAAGACT+GGG + chr8_3:11723868-11723887 Msa1276830:CDS 40.0%
! AAAAATAGACCTGCTGGCTA+CGG - chr8_3:11723923-11723942 None:intergenic 40.0%
GTTCAAAGGAGTTGCACATT+AGG + chr8_3:11724163-11724182 Msa1276830:intron 40.0%
TAGACAAATACGCTGCAACT+GGG + chr8_3:11724385-11724404 Msa1276830:CDS 40.0%
AAACTCGGACAGTAAAAGTG+TGG + chr8_3:11724442-11724461 Msa1276830:CDS 40.0%
! AGTGTGGTGGAACTAACAAA+TGG + chr8_3:11724458-11724477 Msa1276830:CDS 40.0%
GTGTATTGAGGATTGTTCTC+AGG - chr8_3:11724781-11724800 None:intergenic 40.0%
ACTGTTTATGTGGGTAACCT+TGG + chr8_3:11724802-11724821 Msa1276830:CDS 40.0%
CTGTTTATGTGGGTAACCTT+GGG + chr8_3:11724803-11724822 Msa1276830:CDS 40.0%
ATCGTCATTTCCATGCTCTT+GGG + chr8_3:11725213-11725232 Msa1276830:CDS 40.0%
TCCAGCGTGATAAAGGATTT+GGG + chr8_3:11725261-11725280 Msa1276830:CDS 40.0%
GAGATATAGTACTCATGCTG+AGG + chr8_3:11725289-11725308 Msa1276830:CDS 40.0%
TTTGCCACAGAGATAAGACT+GGG - chr8_3:11725342-11725361 None:intergenic 40.0%
! TTTTGCCACAGAGATAAGAC+TGG - chr8_3:11725343-11725362 None:intergenic 40.0%
! TTTTCACCTTTTGATGTCGC+TGG + chr8_3:11725377-11725396 Msa1276830:intron 40.0%
TCGTGTATATTTCACAGCAC+GGG - chr8_3:11725507-11725526 None:intergenic 40.0%
GTCGTGTATATTTCACAGCA+CGG - chr8_3:11725508-11725527 None:intergenic 40.0%
CCAAAATATCTGTTGCGGAT+AGG - chr8_3:11725683-11725702 None:intergenic 40.0%
! CCTATCCGCAACAGATATTT+TGG + chr8_3:11725680-11725699 Msa1276830:CDS 40.0%
!!! CAGATATTTTGGCATACGAG+CGG + chr8_3:11725691-11725710 Msa1276830:CDS 40.0%
!! GGTTTTAGTGAAGAGTCCTC+TGG + chr8_3:11720502-11720521 Msa1276830:five_prime_UTR 45.0%
! GTCCTCTGGTATTTTCTCAG+AGG + chr8_3:11720516-11720535 Msa1276830:five_prime_UTR 45.0%
! CTCCTCTGAGAAAATACCAG+AGG - chr8_3:11720521-11720540 None:intergenic 45.0%
GAGGAGTCTCTTTCTGTAAG+AGG + chr8_3:11720535-11720554 Msa1276830:five_prime_UTR 45.0%
GATGAATATGGACCAACCTG+AGG - chr8_3:11720775-11720794 None:intergenic 45.0%
AGGGATTGCACTAAACACCT+AGG + chr8_3:11720865-11720884 Msa1276830:intron 45.0%
GGGATTGCACTAAACACCTA+GGG + chr8_3:11720866-11720885 Msa1276830:intron 45.0%
!! TGGCTCTGAAATTGCGTTTG+AGG + chr8_3:11721297-11721316 Msa1276830:intron 45.0%
TGTGGATGTGTTCTGCTGTT+GGG + chr8_3:11721656-11721675 Msa1276830:intron 45.0%
ATGCGGTATTGTTTCCTTGG+AGG + chr8_3:11721716-11721735 Msa1276830:intron 45.0%
!! GGGTCCGTTTGATTTGCAAA+AGG + chr8_3:11721822-11721841 Msa1276830:intron 45.0%
!! AGGGAAAGTACCGGACAAAA+CGG + chr8_3:11721842-11721861 Msa1276830:intron 45.0%
AAGAGATTGTAGAGAGTCGG+GGG + chr8_3:11722007-11722026 Msa1276830:intron 45.0%
GAGATAAAGGGGAGAGAGAT+AGG + chr8_3:11722114-11722133 Msa1276830:intron 45.0%
ATAAAGGGGAGAGAGATAGG+AGG + chr8_3:11722117-11722136 Msa1276830:intron 45.0%
TAAAGGGGAGAGAGATAGGA+GGG + chr8_3:11722118-11722137 Msa1276830:intron 45.0%
TCATGTCCTTCGCTAAACCA+CGG - chr8_3:11722267-11722286 None:intergenic 45.0%
CAGCACAACTTCAGTTGTAC+TGG - chr8_3:11722306-11722325 None:intergenic 45.0%
GAACTGTGGATGGATGTGTT+GGG + chr8_3:11722405-11722424 Msa1276830:intron 45.0%
CAGATTGAACCAATCCCAAG+TGG + chr8_3:11722662-11722681 Msa1276830:intron 45.0%
GGCAAATTTCCACTTGGGAT+TGG - chr8_3:11722674-11722693 None:intergenic 45.0%
CAGGAGGCAAATTTCCACTT+GGG - chr8_3:11722679-11722698 None:intergenic 45.0%
GTACTTGGATCAAAACCAGG+AGG - chr8_3:11722695-11722714 None:intergenic 45.0%
AACTTCTTGCAGAAGTGGCT+CGG - chr8_3:11723097-11723116 None:intergenic 45.0%
! CAAGAAGTTTTTGCGGGTAC+TGG + chr8_3:11723108-11723127 Msa1276830:CDS 45.0%
! GCATGCGAAAAGTGTAGCAT+CGG - chr8_3:11723615-11723634 None:intergenic 45.0%
!! ACTTTGTTGGTGACTTGGCA+TGG + chr8_3:11723803-11723822 Msa1276830:intron 45.0%
GTTATGTGGGATCAGAAGAC+TGG + chr8_3:11723867-11723886 Msa1276830:CDS 45.0%
TTCCAAGCCACTTACCTGAA+AGG - chr8_3:11724364-11724383 None:intergenic 45.0%
GTAGACAAATACGCTGCAAC+TGG + chr8_3:11724384-11724403 Msa1276830:CDS 45.0%
CTGGGGGCTTACTAAAACTT+TGG + chr8_3:11724584-11724603 Msa1276830:intron 45.0%
ATCTCTTTACCGTCCTCTGT+AGG - chr8_3:11724742-11724761 None:intergenic 45.0%
TTATGTGGGTAACCTTGGGT+CGG + chr8_3:11724807-11724826 Msa1276830:CDS 45.0%
! ACGACCTTTGGTGATTCTAC+AGG + chr8_3:11725172-11725191 Msa1276830:intron 45.0%
GTTGCCTGTAGAATCACCAA+AGG - chr8_3:11725179-11725198 None:intergenic 45.0%
! CAAGAGCATGGAAATGACGA+TGG - chr8_3:11725214-11725233 None:intergenic 45.0%
CATCGTCATTTCCATGCTCT+TGG + chr8_3:11725212-11725231 Msa1276830:CDS 45.0%
TCGTCATTTCCATGCTCTTG+GGG + chr8_3:11725214-11725233 Msa1276830:CDS 45.0%
GTCCAGCGTGATAAAGGATT+TGG + chr8_3:11725260-11725279 Msa1276830:CDS 45.0%
ACCCAAATCCTTTATCACGC+TGG - chr8_3:11725265-11725284 None:intergenic 45.0%
! AATGCCCAGTCTTATCTCTG+TGG + chr8_3:11725335-11725354 Msa1276830:CDS 45.0%
! AGAGGATTTGAAGCAGTTCC+AGG - chr8_3:11725630-11725649 None:intergenic 45.0%
CAGCTAGCAATGAGCAAGAT+GGG + chr8_3:11725714-11725733 Msa1276830:CDS 45.0%
TTAAGAGGATGCTGTGCTTG+AGG - chr8_3:11725765-11725784 None:intergenic 45.0%
! CCAATTGCAGCTTGCTTAAG+AGG - chr8_3:11725780-11725799 None:intergenic 45.0%
CCTCTTAAGCAAGCTGCAAT+TGG + chr8_3:11725777-11725796 Msa1276830:CDS 45.0%
!!! AAAAATTTAATTTTTTTTAG+TGG + chr8_3:11721069-11721088 Msa1276830:intron 5.0%
!!! AAAATTTAATTTTTTTTAGT+GGG + chr8_3:11721070-11721089 Msa1276830:intron 5.0%
TGTAAGAGGGTCACTGCGTA+GGG + chr8_3:11720549-11720568 Msa1276830:five_prime_UTR 50.0%
CAACAGTCTCTCTATCACCC+TGG + chr8_3:11720736-11720755 Msa1276830:CDS 50.0%
GAATATGGACCAACCTGAGG+TGG - chr8_3:11720772-11720791 None:intergenic 50.0%
AGTTGGGAAAGGAATCCGCA+TGG + chr8_3:11721532-11721551 Msa1276830:intron 50.0%
CTGTGGATGTGTTCTGCTGT+TGG + chr8_3:11721655-11721674 Msa1276830:intron 50.0%
GAGAACGAGAGACGTGAGAT+AGG + chr8_3:11722054-11722073 Msa1276830:intron 50.0%
! CGGGACAACTTTTTGTCCCA+AGG - chr8_3:11722247-11722266 None:intergenic 50.0%
TGGGACAAAAAGTTGTCCCG+TGG + chr8_3:11722247-11722266 Msa1276830:intron 50.0%
CATGTCCTTCGCTAAACCAC+GGG - chr8_3:11722266-11722285 None:intergenic 50.0%
CGAACTGTGGATGGATGTGT+TGG + chr8_3:11722404-11722423 Msa1276830:intron 50.0%
CCAGGAGGCAAATTTCCACT+TGG - chr8_3:11722680-11722699 None:intergenic 50.0%
CCAAGTGGAAATTTGCCTCC+TGG + chr8_3:11722677-11722696 Msa1276830:CDS 50.0%
!! GTGGCTCGGTTACTTGTGTA+TGG - chr8_3:11723083-11723102 None:intergenic 50.0%
GTTAACTGGGCATATGCCAG+TGG + chr8_3:11723438-11723457 Msa1276830:CDS 50.0%
ATATGCCAGTGGTCAGAGAG+AGG + chr8_3:11723449-11723468 Msa1276830:CDS 50.0%
TGTATCCTCTCTCTGACCAC+TGG - chr8_3:11723457-11723476 None:intergenic 50.0%
GGTCAGAGAGAGGATACATC+AGG + chr8_3:11723459-11723478 Msa1276830:CDS 50.0%
!! AGTGTAGCATCGGTAACCTC+AGG - chr8_3:11723605-11723624 None:intergenic 50.0%
ATCAGAAGACTGGGCGATCA+AGG + chr8_3:11723877-11723896 Msa1276830:CDS 50.0%
TCAGAAGACTGGGCGATCAA+GGG + chr8_3:11723878-11723897 Msa1276830:CDS 50.0%
TGTTTCATTCCGTAGCCAGC+AGG + chr8_3:11723911-11723930 Msa1276830:CDS 50.0%
ATGTCCTGTCTGTGCCTTTC+AGG + chr8_3:11724347-11724366 Msa1276830:intron 50.0%
! CTTACCTGAAAGGCACAGAC+AGG - chr8_3:11724354-11724373 None:intergenic 50.0%
! GTCTGTGCCTTTCAGGTAAG+TGG + chr8_3:11724354-11724373 Msa1276830:intron 50.0%
! TGCCTTTCAGGTAAGTGGCT+TGG + chr8_3:11724359-11724378 Msa1276830:intron 50.0%
! AACTGGGCAACAAAAGGTGC+TGG + chr8_3:11724401-11724420 Msa1276830:CDS 50.0%
! CTCGGACAGTAAAAGTGTGG+TGG + chr8_3:11724445-11724464 Msa1276830:CDS 50.0%
AGTTTCTTACCTCCGACCCA+AGG - chr8_3:11724822-11724841 None:intergenic 50.0%
GTTCGTGTCCAGCGTGATAA+AGG + chr8_3:11725254-11725273 Msa1276830:CDS 50.0%
! GCAGCTCTGGCAATTCAGAT+GGG + chr8_3:11725311-11725330 Msa1276830:CDS 50.0%
AGTGAGCCAGCGACATCAAA+AGG - chr8_3:11725386-11725405 None:intergenic 50.0%
! GGATTTGAAGCAGTTCCAGG+TGG - chr8_3:11725627-11725646 None:intergenic 50.0%
ATATCTGTTGCGGATAGGCC+TGG - chr8_3:11725678-11725697 None:intergenic 50.0%
GCAGCTAGCAATGAGCAAGA+TGG + chr8_3:11725713-11725732 Msa1276830:CDS 50.0%
CTAGCAATGAGCAAGATGGG+TGG + chr8_3:11725717-11725736 Msa1276830:CDS 50.0%
! GCTGTGCAGCAGCAACATTT+TGG - chr8_3:11725833-11725852 None:intergenic 50.0%
CTGTAAGAGGGTCACTGCGT+AGG + chr8_3:11720548-11720567 Msa1276830:five_prime_UTR 55.0%
GAGGTGGAGCTAAGAGACCA+GGG - chr8_3:11720756-11720775 None:intergenic 55.0%
TGAGGTGGAGCTAAGAGACC+AGG - chr8_3:11720757-11720776 None:intergenic 55.0%
TGGTCTCTTAGCTCCACCTC+AGG + chr8_3:11720756-11720775 Msa1276830:CDS 55.0%
CTCTTAGCTCCACCTCAGGT+TGG + chr8_3:11720760-11720779 Msa1276830:intron 55.0%
GGGGAGAGAGAGAGAGATAG+AGG + chr8_3:11722026-11722045 Msa1276830:intron 55.0%
GAGAGATAGGAGGGAGAGAG+AGG + chr8_3:11722127-11722146 Msa1276830:intron 55.0%
GATAGGAGGGAGAGAGAGGA+AGG + chr8_3:11722131-11722150 Msa1276830:intron 55.0%
GTTGTCCCGTGGTTTAGCGA+AGG + chr8_3:11722258-11722277 Msa1276830:intron 55.0%
CACACACTGCGGCAAGTACT+TGG - chr8_3:11722710-11722729 None:intergenic 55.0%
!! TGTTGGTGACCTCAGTCCTG+AGG + chr8_3:11723586-11723605 Msa1276830:CDS 55.0%
CATCGGTAACCTCAGGACTG+AGG - chr8_3:11723598-11723617 None:intergenic 55.0%
CAGAAGACTGGGCGATCAAG+GGG + chr8_3:11723879-11723898 Msa1276830:CDS 55.0%
ACTGGGCGATCAAGGGGATT+TGG + chr8_3:11723885-11723904 Msa1276830:CDS 55.0%
CGCTGCAACTGGGCAACAAA+AGG + chr8_3:11724395-11724414 Msa1276830:CDS 55.0%
!! TGGGCAACAAAAGGTGCTGG+CGG + chr8_3:11724404-11724423 Msa1276830:CDS 55.0%
CATTTCCATGCTCTTGGGGC+TGG + chr8_3:11725218-11725237 Msa1276830:CDS 55.0%
! TCTTGGGGCTGGTGTGATAG+AGG + chr8_3:11725229-11725248 Msa1276830:CDS 55.0%
TACTCATGCTGAGGCAGCTC+TGG + chr8_3:11725298-11725317 Msa1276830:CDS 55.0%
! GGCAGCTCTGGCAATTCAGA+TGG + chr8_3:11725310-11725329 Msa1276830:CDS 55.0%
GAAGCAGTTCCAGGTGGAGT+GGG - chr8_3:11725621-11725640 None:intergenic 55.0%
TGAAGCAGTTCCAGGTGGAG+TGG - chr8_3:11725622-11725641 None:intergenic 55.0%
AGCTGCAATTGGAGCTAGCC+AGG + chr8_3:11725788-11725807 Msa1276830:CDS 55.0%
GCTAGCCAGGCGATATACGA+CGG + chr8_3:11725801-11725820 Msa1276830:CDS 55.0%
GATGGATGTGTTGGGTGCCC+TGG + chr8_3:11722413-11722432 Msa1276830:intron 60.0%
!! CGGGTACTGGCCCAGTTGAA+GGG + chr8_3:11723121-11723140 Msa1276830:CDS 60.0%
CGATCGCAGATCTGCTGCTC+TGG + chr8_3:11723296-11723315 Msa1276830:CDS 60.0%
TGTGGGTAACCTTGGGTCGG+AGG + chr8_3:11724810-11724829 Msa1276830:CDS 60.0%
TCACACCAGCCCCAAGAGCA+TGG - chr8_3:11725226-11725245 None:intergenic 60.0%
GTTGCGGATAGGCCTGGTAG+AGG - chr8_3:11725672-11725691 None:intergenic 60.0%
AGCCAGGCGATATACGACGG+TGG + chr8_3:11725804-11725823 Msa1276830:CDS 60.0%
GCCAGGCGATATACGACGGT+GGG + chr8_3:11725805-11725824 Msa1276830:CDS 60.0%
ACCCACCGTCGTATATCGCC+TGG - chr8_3:11725809-11725828 None:intergenic 60.0%
!! GCGGGTACTGGCCCAGTTGA+AGG + chr8_3:11723120-11723139 Msa1276830:CDS 65.0%
! TAGAGGCGCAGCAGCAGGTG+GGG - chr8_3:11725655-11725674 None:intergenic 65.0%
! GTAGAGGCGCAGCAGCAGGT+GGG - chr8_3:11725656-11725675 None:intergenic 65.0%
GGGAGCAAGCCCACTCCACC+TGG + chr8_3:11725609-11725628 Msa1276830:CDS 70.0%
GCAGCAGCAGGTGGGGGAAG+AGG - chr8_3:11725648-11725667 None:intergenic 70.0%
! AGAGGCGCAGCAGCAGGTGG+GGG - chr8_3:11725654-11725673 None:intergenic 70.0%
! GGTAGAGGCGCAGCAGCAGG+TGG - chr8_3:11725657-11725676 None:intergenic 70.0%
! CCTGGTAGAGGCGCAGCAGC+AGG - chr8_3:11725660-11725679 None:intergenic 70.0%
CCTGCTGCTGCGCCTCTACC+AGG + chr8_3:11725657-11725676 Msa1276830:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 11720467 11726203 11720467 ID=Msa1276830;Name=Msa1276830
chr8_3 mRNA 11720467 11726203 11720467 ID=Msa1276830-mRNA-1;Parent=Msa1276830;Name=Msa1276830-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|1|1|1|1|1|12|331|431
chr8_3 exon 11720467 11720777 11720467 ID=Msa1276830-mRNA-1:exon:4724;Parent=Msa1276830-mRNA-1
chr8_3 exon 11722665 11722726 11722665 ID=Msa1276830-mRNA-1:exon:4725;Parent=Msa1276830-mRNA-1
chr8_3 exon 11723065 11723167 11723065 ID=Msa1276830-mRNA-1:exon:4726;Parent=Msa1276830-mRNA-1
chr8_3 exon 11723270 11723346 11723270 ID=Msa1276830-mRNA-1:exon:4727;Parent=Msa1276830-mRNA-1
chr8_3 exon 11723419 11723480 11723419 ID=Msa1276830-mRNA-1:exon:4728;Parent=Msa1276830-mRNA-1
chr8_3 exon 11723570 11723657 11723570 ID=Msa1276830-mRNA-1:exon:4729;Parent=Msa1276830-mRNA-1
chr8_3 exon 11723857 11723932 11723857 ID=Msa1276830-mRNA-1:exon:4730;Parent=Msa1276830-mRNA-1
chr8_3 exon 11724020 11724050 11724020 ID=Msa1276830-mRNA-1:exon:4731;Parent=Msa1276830-mRNA-1
chr8_3 exon 11724369 11724488 11724369 ID=Msa1276830-mRNA-1:exon:4732;Parent=Msa1276830-mRNA-1
chr8_3 exon 11724746 11724831 11724746 ID=Msa1276830-mRNA-1:exon:4733;Parent=Msa1276830-mRNA-1
chr8_3 exon 11725194 11725370 11725194 ID=Msa1276830-mRNA-1:exon:4734;Parent=Msa1276830-mRNA-1
chr8_3 exon 11725600 11726203 11725600 ID=Msa1276830-mRNA-1:exon:4735;Parent=Msa1276830-mRNA-1
chr8_3 five_prime_UTR 11720467 11720636 11720467 ID=Msa1276830-mRNA-1:five_prime_utr;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11720637 11720777 11720637 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11722665 11722726 11722665 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11723065 11723167 11723065 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11723270 11723346 11723270 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11723419 11723480 11723419 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11723570 11723657 11723570 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11723857 11723932 11723857 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11724020 11724050 11724020 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11724369 11724488 11724369 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11724746 11724831 11724746 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11725194 11725370 11725194 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 CDS 11725600 11725872 11725600 ID=Msa1276830-mRNA-1:cds;Parent=Msa1276830-mRNA-1
chr8_3 three_prime_UTR 11725873 11726203 11725873 ID=Msa1276830-mRNA-1:three_prime_utr;Parent=Msa1276830-mRNA-1
Gene Sequence

>Msa1276830

ATGCAGAATCATAGGCTGAAGCAACAGCAACATCAGCAGCAGCAACAACAACAACAACAACAACAACAAGCTATGATGCAACAGGCTGCTCTTCTTCAACAACAGTCTCTCTATCACCCTGGTCTCTTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATTTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGCAATGTCCATACACAAGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGGGTGTAAGCTTTTTAGGAAAGAGAAGTCATCTTATGGATTCATTCATTACTTCGATCGCAGATCTGCTGCTCTGGCCATATTAACTCTCAATGGAAGGCATCTATTCGGGCAACCTATCAAAGTTAACTGGGCATATGCCAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACCGATGCTACACTTTTCGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGATCAAGGGGATTTGGATTTGTTTCATTCCGTAGCCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGCGGTATTGAAGAGAAGCAAAACTCGGACAGTAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGAGGACGGTAAAGAGATATCTAGCAATGATGTTCCTGAGAACAATCCTCAATACACAACTGTTTATGTGGGTAACCTTGGGTCGGAGGCAACACAGCTTGATCTCCATCGTCATTTCCATGCTCTTGGGGCTGGTGTGATAGAGGAAGTTCGTGTCCAGCGTGATAAAGGATTTGGGTTTGTGAGATATAGTACTCATGCTGAGGCAGCTCTGGCAATTCAGATGGGAAATGCCCAGTCTTATCTCTGTGGCAAAATAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGCGCCTCTACCAGGCCTATCCGCAACAGATATTTTGGCATACGAGCGGCAGCTAGCAATGAGCAAGATGGGTGGAGTTCATGCTGCGTTGATGCATCCTCAAGCACAGCATCCTCTTAAGCAAGCTGCAATTGGAGCTAGCCAGGCGATATACGACGGTGGGTTCCAAAATGTTGCTGCTGCACAGCAAATGATGTATTATCAGTAA
Protein sequence

>Msa1276830

MQNHRLKQQQHQQQQQQQQQQQQAMMQQAALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ*