Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1020190 | Msa1235200 | 0.831325 | 1.779581e-55 | -8.615850e-47 |
| Msa0298720 | Msa1235200 | 0.820714 | 5.926709e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCCCACTTGATGATT+TGG | 0.254005 | 8_2:+13002541 | None:intergenic |
| CACTTGATGATTTGGTGATT+TGG | 0.295699 | 8_2:+13002549 | None:intergenic |
| TTACCTTCTGATCGTAATTC+CGG | 0.336812 | 8_2:+13007655 | None:intergenic |
| GGAATTCGTTTCCGCCGTTC+CGG | 0.384074 | 8_2:-13007674 | Msa1235200:CDS |
| AGAGTTCAGATAAATGATAT+TGG | 0.384122 | 8_2:-13006806 | Msa1235200:CDS |
| GGAACGGCGGAAACGAATTC+CGG | 0.413854 | 8_2:+13007676 | None:intergenic |
| ATAGACAAGGAAATTCTCAT+TGG | 0.479992 | 8_2:+13008384 | None:intergenic |
| ACAAAGTTGTTGAATTGAAG+AGG | 0.541562 | 8_2:-13002577 | Msa1235200:CDS |
| AATTCCGGTGTGGTGGTCGC+CGG | 0.565738 | 8_2:+13007691 | None:intergenic |
| CAAATCACCAAATCATCAAG+TGG | 0.587707 | 8_2:-13002548 | Msa1235200:CDS |
| TGGAGAGGCAATCAAACAGA+AGG | 0.604393 | 8_2:-13006786 | Msa1235200:intron |
| GGAAACGAATTCCGGTGTGG+TGG | 0.624336 | 8_2:+13007684 | None:intergenic |
| TTCTGATCGTAATTCCGGAA+CGG | 0.632504 | 8_2:+13007660 | None:intergenic |
| AAATCACCAAATCATCAAGT+GGG | 0.643117 | 8_2:-13002547 | Msa1235200:CDS |
| GTTCCGGAATTACGATCAGA+AGG | 0.644287 | 8_2:-13007658 | Msa1235200:intron |
| GTTCTTTCAAGAACAAATCG+AGG | 0.644335 | 8_2:-13007528 | Msa1235200:CDS |
| TTTACCGGCGACCACCACAC+CGG | 0.651318 | 8_2:-13007695 | Msa1235200:CDS |
| TCAGATAAATGATATTGGAG+AGG | 0.654158 | 8_2:-13006801 | Msa1235200:CDS |
| AATCTTCAAAATCATAGACA+AGG | 0.667738 | 8_2:+13008371 | None:intergenic |
| TCGAGGAAGCAGATTAACCA+AGG | 0.681630 | 8_2:-13007511 | Msa1235200:intron |
| GGCGGAAACGAATTCCGGTG+TGG | 0.690128 | 8_2:+13007681 | None:intergenic |
| TGATCGTAATTCCGGAACGG+CGG | 0.697591 | 8_2:+13007663 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATCATTAAAAAATAATTT+TGG | - | chr8_2:13002691-13002710 | Msa1235200:intron | 10.0% |
| !!! | TATGCAAATATTTTAAATTT+TGG | + | chr8_2:13005909-13005928 | None:intergenic | 10.0% |
| !! | ATGTTATTATAAATTAAGAT+GGG | + | chr8_2:13007031-13007050 | None:intergenic | 10.0% |
| !! | AATGTTATTATAAATTAAGA+TGG | + | chr8_2:13007032-13007051 | None:intergenic | 10.0% |
| !! | AAAATACTAACTTAAATAAT+AGG | + | chr8_2:13007349-13007368 | None:intergenic | 10.0% |
| !! | GAAATTTATAAAAAAGAATA+TGG | - | chr8_2:13007476-13007495 | Msa1235200:intron | 10.0% |
| !!! | ATTGATTTACAAATTAAAAA+CGG | + | chr8_2:13007509-13007528 | None:intergenic | 10.0% |
| !! | AAATGAATAAACTTAATATA+TGG | + | chr8_2:13007768-13007787 | None:intergenic | 10.0% |
| !! | ATGAATAAAATTTATCAAAA+TGG | + | chr8_2:13007793-13007812 | None:intergenic | 10.0% |
| !! | ATTGAACAAAAACAATATAT+TGG | + | chr8_2:13003547-13003566 | None:intergenic | 15.0% |
| !! | TTATAAAAAAAATACAACTC+TGG | - | chr8_2:13003655-13003674 | Msa1235200:intron | 15.0% |
| !! | TTATCTTATTAGTAACTTAT+TGG | - | chr8_2:13003686-13003705 | Msa1235200:intron | 15.0% |
| !!! | CATAGATCTTATTAATTTTA+TGG | - | chr8_2:13003718-13003737 | Msa1235200:intron | 15.0% |
| !!! | TTTCATTTTCATACATTAAA+AGG | - | chr8_2:13004153-13004172 | Msa1235200:intron | 15.0% |
| !! | TTGGTATAGTTATATTAAAT+GGG | + | chr8_2:13005230-13005249 | None:intergenic | 15.0% |
| !! | ATTGGTATAGTTATATTAAA+TGG | + | chr8_2:13005231-13005250 | None:intergenic | 15.0% |
| !!! | TAACTATACCAATTAAATTT+TGG | - | chr8_2:13005238-13005257 | Msa1235200:intron | 15.0% |
| !! | AATTAAACTTTGATAGATAT+AGG | + | chr8_2:13005486-13005505 | None:intergenic | 15.0% |
| !!! | TGTAAATTGTTAATTTTTCT+AGG | + | chr8_2:13005638-13005657 | None:intergenic | 15.0% |
| !! | TTTCAATGTAAAATAAATCA+AGG | + | chr8_2:13005964-13005983 | None:intergenic | 15.0% |
| !! | TTTCATTAAGAAAATGTTAA+AGG | - | chr8_2:13006705-13006724 | Msa1235200:intron | 15.0% |
| !!! | TTTATATCTTTTCATTTTGA+TGG | - | chr8_2:13006733-13006752 | Msa1235200:intron | 15.0% |
| !! | AAATCTAATTCAAATAGAAA+GGG | + | chr8_2:13006785-13006804 | None:intergenic | 15.0% |
| !! | TAAATCTAATTCAAATAGAA+AGG | + | chr8_2:13006786-13006805 | None:intergenic | 15.0% |
| !! | TACTTCATTACTATTTATAT+TGG | - | chr8_2:13007214-13007233 | Msa1235200:intron | 15.0% |
| !! | AATAATAGCATCAAAATAAA+AGG | + | chr8_2:13007335-13007354 | None:intergenic | 15.0% |
| !! | TTGATTTACAAATTAAAAAC+GGG | + | chr8_2:13007508-13007527 | None:intergenic | 15.0% |
| !! | TAGAATCTAATTTACATAAT+TGG | + | chr8_2:13007560-13007579 | None:intergenic | 15.0% |
| !! | TTGATGTTTATAATTGAAAT+TGG | - | chr8_2:13008183-13008202 | Msa1235200:intron | 15.0% |
| !! | TATAATTTGAGCACAATATT+TGG | - | chr8_2:13002541-13002560 | Msa1235200:CDS | 20.0% |
| !! | ATCTTAATAATATACAAGCA+TGG | - | chr8_2:13002601-13002620 | Msa1235200:intron | 20.0% |
| !! | TATTGTGTGAATACTTAAAA+TGG | + | chr8_2:13002722-13002741 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTGAATTGAAGA+GGG | + | chr8_2:13002776-13002795 | None:intergenic | 20.0% |
| !!! | ATTTGAATTTTGAATTGAAG+AGG | + | chr8_2:13002777-13002796 | None:intergenic | 20.0% |
| !!! | AAATTTGGATTAGATAAATC+TGG | + | chr8_2:13003250-13003269 | None:intergenic | 20.0% |
| !! | AAACCATATAAATGATTTGA+GGG | + | chr8_2:13003476-13003495 | None:intergenic | 20.0% |
| !!! | CATTTATATGGTTTGTTTTT+TGG | - | chr8_2:13003482-13003501 | Msa1235200:intron | 20.0% |
| !!! | TTTTTGGAGAGTTTAAAATT+TGG | - | chr8_2:13003498-13003517 | Msa1235200:intron | 20.0% |
| !!! | GATTTTAAATGCAGTAAATT+TGG | - | chr8_2:13004439-13004458 | Msa1235200:intron | 20.0% |
| !! | ACTAATGATTAACATATGTA+AGG | + | chr8_2:13004614-13004633 | None:intergenic | 20.0% |
| !! | TTACATATGTTAATCATTAG+TGG | - | chr8_2:13004613-13004632 | Msa1235200:intron | 20.0% |
| !! | TAATCTGACCAAAAAATTTA+GGG | + | chr8_2:13005004-13005023 | None:intergenic | 20.0% |
| !! | ATAATCTGACCAAAAAATTT+AGG | + | chr8_2:13005005-13005024 | None:intergenic | 20.0% |
| !! | AATCAACACCAAAATTTAAT+TGG | + | chr8_2:13005249-13005268 | None:intergenic | 20.0% |
| !!! | TAACCAAATCTTTTCTAAAA+GGG | - | chr8_2:13005386-13005405 | Msa1235200:intron | 20.0% |
| !! | AAGTCATCTTTAAATTCATA+AGG | + | chr8_2:13005509-13005528 | None:intergenic | 20.0% |
| !! | AAGATCATCAAATATGAATT+TGG | - | chr8_2:13005699-13005718 | Msa1235200:intron | 20.0% |
| !!! | TTTCTTTTTTCTTTTTTCGA+GGG | + | chr8_2:13006092-13006111 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTTCTTTTTTCG+AGG | + | chr8_2:13006093-13006112 | None:intergenic | 20.0% |
| !! | GAATTCAATATCAAGATTAA+AGG | + | chr8_2:13006170-13006189 | None:intergenic | 20.0% |
| !! | TTCAGTTTACAATAAACAAA+GGG | + | chr8_2:13006247-13006266 | None:intergenic | 20.0% |
| !! | TTTCAGTTTACAATAAACAA+AGG | + | chr8_2:13006248-13006267 | None:intergenic | 20.0% |
| !!! | ATTGATTTAAAGAAGAACTA+TGG | - | chr8_2:13006993-13007012 | Msa1235200:intron | 20.0% |
| !!! | AAAAAAAGAGAGTACAAAAT+AGG | + | chr8_2:13007170-13007189 | None:intergenic | 20.0% |
| !! | TGTAAATCAATTCATAGATT+AGG | - | chr8_2:13007518-13007537 | Msa1235200:CDS | 20.0% |
| !! | TAGATTTAGTAATCTCAAAA+AGG | + | chr8_2:13007870-13007889 | None:intergenic | 20.0% |
| ! | AATCTTCAAAATCATAGACA+AGG | + | chr8_2:13002488-13002507 | None:intergenic | 25.0% |
| ! | TATAGAAAGTGATGTTTGTT+GGG | + | chr8_2:13002846-13002865 | None:intergenic | 25.0% |
| ! | ATATAGAAAGTGATGTTTGT+TGG | + | chr8_2:13002847-13002866 | None:intergenic | 25.0% |
| ! | AGAAAGTGAGGAAAAAAAAA+AGG | + | chr8_2:13002901-13002920 | None:intergenic | 25.0% |
| !!! | TACTTTTGAAGAAACTTTAC+CGG | - | chr8_2:13003146-13003165 | Msa1235200:intron | 25.0% |
| ! | GATTAGATAAATCTGGATTA+GGG | + | chr8_2:13003243-13003262 | None:intergenic | 25.0% |
| ! | TTGAAATTCAAATATCACCT+TGG | + | chr8_2:13003365-13003384 | None:intergenic | 25.0% |
| ! | AAACAAATTTCATCCCAAAA+TGG | + | chr8_2:13003424-13003443 | None:intergenic | 25.0% |
| ! | CAAACCATATAAATGATTTG+AGG | + | chr8_2:13003477-13003496 | None:intergenic | 25.0% |
| ! | GAACAAAAACAATATATTGG+AGG | + | chr8_2:13003544-13003563 | None:intergenic | 25.0% |
| ! | TCTTATGTTGTATAACTGTT+AGG | + | chr8_2:13003746-13003765 | None:intergenic | 25.0% |
| ! | AGAGTTCAGATAAATGATAT+TGG | - | chr8_2:13004050-13004069 | Msa1235200:intron | 25.0% |
| !!! | ATAATCCTGCTTTTTAATCA+TGG | - | chr8_2:13004094-13004113 | Msa1235200:intron | 25.0% |
| !! | CATTTTCATACATTAAAAGG+TGG | - | chr8_2:13004156-13004175 | Msa1235200:intron | 25.0% |
| !!! | TTAGTAGTTTTGGATTGATT+TGG | - | chr8_2:13004222-13004241 | Msa1235200:intron | 25.0% |
| !! | AAAATTTAGGGTCATTAACA+AGG | + | chr8_2:13004992-13005011 | None:intergenic | 25.0% |
| !!! | GTTAATGACCCTAAATTTTT+TGG | - | chr8_2:13004993-13005012 | Msa1235200:intron | 25.0% |
| ! | CACAAAAACAAAGTAATTGT+CGG | - | chr8_2:13005123-13005142 | Msa1235200:intron | 25.0% |
| ! | ACTTCATAATATGAATGAGA+AGG | + | chr8_2:13005358-13005377 | None:intergenic | 25.0% |
| !! | GTAACCAAATCTTTTCTAAA+AGG | - | chr8_2:13005385-13005404 | Msa1235200:intron | 25.0% |
| !!! | AATCCCTTTTAGAAAAGATT+TGG | + | chr8_2:13005392-13005411 | None:intergenic | 25.0% |
| ! | TTTCATATGAATAAGGACAT+GGG | + | chr8_2:13005791-13005810 | None:intergenic | 25.0% |
| ! | TCATGAGTTTCATATGAATA+AGG | + | chr8_2:13005798-13005817 | None:intergenic | 25.0% |
| ! | GTAAAAGATTCTAAACTCAA+TGG | + | chr8_2:13005862-13005881 | None:intergenic | 25.0% |
| !! | TTTTACCATTTTCTTGAGAT+TGG | - | chr8_2:13005876-13005895 | Msa1235200:intron | 25.0% |
| !! | TTTACCATTTTCTTGAGATT+GGG | - | chr8_2:13005877-13005896 | Msa1235200:intron | 25.0% |
| !! | AGCTAACAAAACTTTTAACA+TGG | + | chr8_2:13006440-13006459 | None:intergenic | 25.0% |
| !! | CTATTAATTTTGTTGACAGT+AGG | - | chr8_2:13006458-13006477 | Msa1235200:intron | 25.0% |
| !!! | AAGAGTATTGCTAACAAAAA+TGG | + | chr8_2:13006500-13006519 | None:intergenic | 25.0% |
| ! | GTCAAATTTGAAAACTATTG+TGG | + | chr8_2:13006933-13006952 | None:intergenic | 25.0% |
| ! | ATATACATCTAATGAAGAGT+AGG | + | chr8_2:13007116-13007135 | None:intergenic | 25.0% |
| !! | TTACTTTATTTGAGTAGTGA+TGG | + | chr8_2:13007378-13007397 | None:intergenic | 25.0% |
| ! | CTACTCAAATAAAGTAATGA+AGG | - | chr8_2:13007381-13007400 | Msa1235200:intron | 25.0% |
| ! | ATAAGTAAGTTTCAAACTCA+TGG | + | chr8_2:13007680-13007699 | None:intergenic | 25.0% |
| ! | ATAGATATAGATATGGAATG+AGG | + | chr8_2:13007822-13007841 | None:intergenic | 25.0% |
| ! | CAGATCAATAGATATAGATA+TGG | + | chr8_2:13007829-13007848 | None:intergenic | 25.0% |
| ! | TGCATTTACTAAACCTAAAA+TGG | - | chr8_2:13007946-13007965 | Msa1235200:intron | 25.0% |
| !! | TATGAAACACATACCATTTT+AGG | + | chr8_2:13007962-13007981 | None:intergenic | 25.0% |
| !!! | GTTTTAGATCTTACAAGAAA+TGG | - | chr8_2:13007994-13008013 | Msa1235200:intron | 25.0% |
| !! | GTTCTATTCACCTTTTATTA+CGG | - | chr8_2:13008217-13008236 | Msa1235200:intron | 25.0% |
| ! | AGTAACTTATCCGTAATAAA+AGG | + | chr8_2:13008230-13008249 | None:intergenic | 25.0% |
| ! | TTGATGTGTTCTTAAAAACA+CGG | - | chr8_2:13008385-13008404 | Msa1235200:CDS | 25.0% |
| ATAGACAAGGAAATTCTCAT+TGG | + | chr8_2:13002475-13002494 | None:intergenic | 30.0% | |
| ! | TTTTCAAACTCAATCCAATG+TGG | - | chr8_2:13002641-13002660 | Msa1235200:intron | 30.0% |
| ! | TAATGATGATGTGACATTCA+GGG | + | chr8_2:13002680-13002699 | None:intergenic | 30.0% |
| ! | TTAATGATGATGTGACATTC+AGG | + | chr8_2:13002681-13002700 | None:intergenic | 30.0% |
| !!! | TGAATGAGTGAGTTTTAAAG+AGG | + | chr8_2:13003107-13003126 | None:intergenic | 30.0% |
| GGATTAGATAAATCTGGATT+AGG | + | chr8_2:13003244-13003263 | None:intergenic | 30.0% | |
| TGCGAAAAAGAAGAGAAATT+TGG | + | chr8_2:13003265-13003284 | None:intergenic | 30.0% | |
| TTCGGATCTGAGAAAAAAAT+GGG | + | chr8_2:13003396-13003415 | None:intergenic | 30.0% | |
| TTTCGGATCTGAGAAAAAAA+TGG | + | chr8_2:13003397-13003416 | None:intergenic | 30.0% | |
| CATCCCTCAAATCATTTATA+TGG | - | chr8_2:13003470-13003489 | Msa1235200:intron | 30.0% | |
| !! | CTCTGATTTTGTTTGTTGAT+AGG | - | chr8_2:13004011-13004030 | Msa1235200:intron | 30.0% |
| TCAGATAAATGATATTGGAG+AGG | - | chr8_2:13004055-13004074 | Msa1235200:intron | 30.0% | |
| ATAGATTGCTATACTACAAC+TGG | - | chr8_2:13004321-13004340 | Msa1235200:intron | 30.0% | |
| ATGTGATGATAAACAGATTC+TGG | + | chr8_2:13004393-13004412 | None:intergenic | 30.0% | |
| AGATCAAGTGTAATTCTACA+TGG | - | chr8_2:13004671-13004690 | Msa1235200:intron | 30.0% | |
| CTACATGGAAACTACTTTAA+TGG | - | chr8_2:13004686-13004705 | Msa1235200:intron | 30.0% | |
| TAGAGAATTTCTCCTTACTT+TGG | - | chr8_2:13004921-13004940 | Msa1235200:intron | 30.0% | |
| !! | ACTGATATAGTTTTGCTTCT+AGG | + | chr8_2:13004963-13004982 | None:intergenic | 30.0% |
| !!! | CGACAATTACTTTGTTTTTG+TGG | + | chr8_2:13005125-13005144 | None:intergenic | 30.0% |
| AAAAACAAAGTAATTGTCGG+AGG | - | chr8_2:13005126-13005145 | Msa1235200:intron | 30.0% | |
| AAGATGACTTATCAAACTCA+TGG | - | chr8_2:13005519-13005538 | Msa1235200:intron | 30.0% | |
| AGATGACTTATCAAACTCAT+GGG | - | chr8_2:13005520-13005539 | Msa1235200:intron | 30.0% | |
| CATACTCATCAGTTTCAAAT+AGG | + | chr8_2:13005579-13005598 | None:intergenic | 30.0% | |
| TGAAACTCATGAGTATGTAT+AGG | - | chr8_2:13005740-13005759 | Msa1235200:intron | 30.0% | |
| GTGAGATAGTTAACTTTGTT+AGG | + | chr8_2:13005766-13005785 | None:intergenic | 30.0% | |
| GTTTCATATGAATAAGGACA+TGG | + | chr8_2:13005792-13005811 | None:intergenic | 30.0% | |
| AAATCCCAATCTCAAGAAAA+TGG | + | chr8_2:13005884-13005903 | None:intergenic | 30.0% | |
| ! | ATTCCAACTGATTTCAGAAA+AGG | + | chr8_2:13006019-13006038 | None:intergenic | 30.0% |
| !!! | TTTTCTGAAATCAGTTGGAA+TGG | - | chr8_2:13006018-13006037 | Msa1235200:intron | 30.0% |
| !! | TGTGTTACTTATCTTGTCTT+GGG | + | chr8_2:13006067-13006086 | None:intergenic | 30.0% |
| !! | ATGTGTTACTTATCTTGTCT+TGG | + | chr8_2:13006068-13006087 | None:intergenic | 30.0% |
| TCCACATGTATTAAAGAGTA+GGG | + | chr8_2:13006216-13006235 | None:intergenic | 30.0% | |
| ATCCACATGTATTAAAGAGT+AGG | + | chr8_2:13006217-13006236 | None:intergenic | 30.0% | |
| CTGAAAATTAGTGCACAATA+AGG | - | chr8_2:13006262-13006281 | Msa1235200:intron | 30.0% | |
| !! | GCCATTTTGCACATTAATTA+TGG | - | chr8_2:13006393-13006412 | Msa1235200:intron | 30.0% |
| GCCATAATTAATGTGCAAAA+TGG | + | chr8_2:13006397-13006416 | None:intergenic | 30.0% | |
| AGTATTGCTAACAAAAATGG+TGG | + | chr8_2:13006497-13006516 | None:intergenic | 30.0% | |
| ! | TTGACATGGCTAATGATTTT+AGG | - | chr8_2:13006518-13006537 | Msa1235200:intron | 30.0% |
| !! | TTTAGGTTGTTGTATGAGAT+TGG | - | chr8_2:13006535-13006554 | Msa1235200:intron | 30.0% |
| !!! | AATTTTGAAATCTTTCCTGC+AGG | - | chr8_2:13006606-13006625 | Msa1235200:intron | 30.0% |
| !! | ATTTTGATGGCTGAATTTCT+TGG | - | chr8_2:13006746-13006765 | Msa1235200:intron | 30.0% |
| !! | TTTTGATGGCTGAATTTCTT+GGG | - | chr8_2:13006747-13006766 | Msa1235200:intron | 30.0% |
| !!! | TAGCTTTTGAGATTGTATCA+TGG | + | chr8_2:13006815-13006834 | None:intergenic | 30.0% |
| ! | TATTCATGTCATTTGGACAA+TGG | + | chr8_2:13006838-13006857 | None:intergenic | 30.0% |
| ACCTAATTTACTTGAGTCAT+AGG | - | chr8_2:13006883-13006902 | Msa1235200:intron | 30.0% | |
| AGTAGGCATTCATAATCAAA+TGG | + | chr8_2:13007099-13007118 | None:intergenic | 30.0% | |
| AAACTTACTTATCAAGCTCA+GGG | - | chr8_2:13007688-13007707 | Msa1235200:CDS | 30.0% | |
| TTAACACATACTAATTGTCG+AGG | + | chr8_2:13007904-13007923 | None:intergenic | 30.0% | |
| GCAAAAAATCGCATCTTAAA+TGG | - | chr8_2:13008050-13008069 | Msa1235200:intron | 30.0% | |
| TAACTCATAATCAAGTTCTG+AGG | - | chr8_2:13008092-13008111 | Msa1235200:intron | 30.0% | |
| ACAAAGTTGTTGAATTGAAG+AGG | - | chr8_2:13008279-13008298 | Msa1235200:intron | 30.0% | |
| AAATCACCAAATCATCAAGT+GGG | - | chr8_2:13008309-13008328 | Msa1235200:intron | 30.0% | |
| ! | AAATTTCCCACTTGATGATT+TGG | + | chr8_2:13008318-13008337 | None:intergenic | 30.0% |
| ! | TCATCAAGTGGGAAATTTTA+TGG | - | chr8_2:13008320-13008339 | Msa1235200:intron | 30.0% |
| ! | AATGATGATGTGACATTCAG+GGG | + | chr8_2:13002679-13002698 | None:intergenic | 35.0% |
| GGATAAGAGAAAAAGTAGGA+GGG | + | chr8_2:13002825-13002844 | None:intergenic | 35.0% | |
| GTTGGGATAAGAGAAAAAGT+AGG | + | chr8_2:13002829-13002848 | None:intergenic | 35.0% | |
| GAAAGAAGGTAGAGGAAAAA+GGG | + | chr8_2:13003018-13003037 | None:intergenic | 35.0% | |
| AGAAAGAAGGTAGAGGAAAA+AGG | + | chr8_2:13003019-13003038 | None:intergenic | 35.0% | |
| GAAATGAAGAAAGAAGGTAG+AGG | + | chr8_2:13003026-13003045 | None:intergenic | 35.0% | |
| TGATCGGAAATGAAGAAAGA+AGG | + | chr8_2:13003032-13003051 | None:intergenic | 35.0% | |
| !!! | GGTTTTATTTTTGTGTGAGG+CGG | + | chr8_2:13003062-13003081 | None:intergenic | 35.0% |
| !!! | GGTGGTTTTATTTTTGTGTG+AGG | + | chr8_2:13003065-13003084 | None:intergenic | 35.0% |
| !!! | AGTGAGTTTTAAAGAGGATG+AGG | + | chr8_2:13003101-13003120 | None:intergenic | 35.0% |
| TTACCTTCTGATCGTAATTC+CGG | + | chr8_2:13003204-13003223 | None:intergenic | 35.0% | |
| !! | AGTTCATTCATTTTTCGTGC+AGG | - | chr8_2:13003306-13003325 | Msa1235200:intron | 35.0% |
| GTTCTTTCAAGAACAAATCG+AGG | - | chr8_2:13003328-13003347 | Msa1235200:intron | 35.0% | |
| !! | CTGAGAAAAAAATGGGTTAG+AGG | + | chr8_2:13003389-13003408 | None:intergenic | 35.0% |
| ! | AGATCCGAAAATAGCCATTT+TGG | - | chr8_2:13003407-13003426 | Msa1235200:intron | 35.0% |
| !! | GATCCGAAAATAGCCATTTT+GGG | - | chr8_2:13003408-13003427 | Msa1235200:intron | 35.0% |
| !! | CATCCCAAAATGGCTATTTT+CGG | + | chr8_2:13003414-13003433 | None:intergenic | 35.0% |
| !!! | TTTTTTTCCCTCTCCAAATC+AGG | - | chr8_2:13003592-13003611 | Msa1235200:intron | 35.0% |
| AAATGTGTAAGAGCTTGAGT+TGG | + | chr8_2:13003784-13003803 | None:intergenic | 35.0% | |
| ! | TACACATTTTGTACAGCATG+AGG | - | chr8_2:13003795-13003814 | Msa1235200:intron | 35.0% |
| TCAAGCCATGATTAAAAAGC+AGG | + | chr8_2:13004102-13004121 | None:intergenic | 35.0% | |
| !! | GAGTGTTGTGTTAGTAGTTT+TGG | - | chr8_2:13004212-13004231 | Msa1235200:intron | 35.0% |
| ! | TCCTTACTTTGGTCTGTTTT+TGG | - | chr8_2:13004932-13004951 | Msa1235200:intron | 35.0% |
| TCCAAAAACAGACCAAAGTA+AGG | + | chr8_2:13004936-13004955 | None:intergenic | 35.0% | |
| ! | ATTAGTTTACAAGCCTCCAA+TGG | - | chr8_2:13005283-13005302 | Msa1235200:intron | 35.0% |
| GTCATATGAAACTGATGAGA+AGG | - | chr8_2:13005606-13005625 | Msa1235200:intron | 35.0% | |
| TACATGTTAGGTCAGAACAT+GGG | + | chr8_2:13005662-13005681 | None:intergenic | 35.0% | |
| ATACATGTTAGGTCAGAACA+TGG | + | chr8_2:13005663-13005682 | None:intergenic | 35.0% | |
| GTCAGTTACACATACATGTT+AGG | + | chr8_2:13005674-13005693 | None:intergenic | 35.0% | |
| TCATGCAAATCACATGAGTT+AGG | + | chr8_2:13005832-13005851 | None:intergenic | 35.0% | |
| !!! | GTTCCTTTTCTGAAATCAGT+TGG | - | chr8_2:13006013-13006032 | Msa1235200:intron | 35.0% |
| !! | GAATGGACAAGATGTTTTGA+TGG | - | chr8_2:13006035-13006054 | Msa1235200:intron | 35.0% |
| CCACATGTATTAAAGAGTAG+GGG | + | chr8_2:13006215-13006234 | None:intergenic | 35.0% | |
| TGCAAAATGGCATATAGAGT+TGG | + | chr8_2:13006384-13006403 | None:intergenic | 35.0% | |
| TGTTAGCAATACTCTTGACA+TGG | - | chr8_2:13006504-13006523 | Msa1235200:intron | 35.0% | |
| TCTTATAGTGATTGAGGCAA+AGG | + | chr8_2:13006640-13006659 | None:intergenic | 35.0% | |
| TTGCCTCAATCACTATAAGA+TGG | - | chr8_2:13006640-13006659 | Msa1235200:intron | 35.0% | |
| ACAGCGAATAAAAATGCATG+TGG | - | chr8_2:13006679-13006698 | Msa1235200:intron | 35.0% | |
| TGACAGCTATTCATGTCATT+TGG | + | chr8_2:13006845-13006864 | None:intergenic | 35.0% | |
| GCCTATGACTCAAGTAAATT+AGG | + | chr8_2:13006887-13006906 | None:intergenic | 35.0% | |
| TGAAAACTATTGTGGTCATG+TGG | + | chr8_2:13006925-13006944 | None:intergenic | 35.0% | |
| ! | TTTGACAGCCACTTTAATTG+AGG | - | chr8_2:13006947-13006966 | Msa1235200:intron | 35.0% |
| ! | TTGACAGCCACTTTAATTGA+GGG | - | chr8_2:13006948-13006967 | Msa1235200:intron | 35.0% |
| TATGACTCCCTCAATTAAAG+TGG | + | chr8_2:13006958-13006977 | None:intergenic | 35.0% | |
| TGAGGGAGTCATATTGAATA+AGG | - | chr8_2:13006965-13006984 | Msa1235200:intron | 35.0% | |
| GAGGGAGTCATATTGAATAA+GGG | - | chr8_2:13006966-13006985 | Msa1235200:intron | 35.0% | |
| ! | CTTTATTTGAGTAGTGATGG+TGG | + | chr8_2:13007375-13007394 | None:intergenic | 35.0% |
| AGTAATGAAGGCTCATACTT+TGG | - | chr8_2:13007393-13007412 | Msa1235200:intron | 35.0% | |
| GAAACTTACTTATCAAGCTC+AGG | - | chr8_2:13007687-13007706 | Msa1235200:CDS | 35.0% | |
| AATGTGATCTGAGTTTCTCA+TGG | - | chr8_2:13008124-13008143 | Msa1235200:intron | 35.0% | |
| TTGTGTTCTTATTACTCTGC+AGG | - | chr8_2:13008253-13008272 | Msa1235200:intron | 35.0% | |
| !! | CACTTGATGATTTGGTGATT+TGG | + | chr8_2:13008310-13008329 | None:intergenic | 35.0% |
| CAAATCACCAAATCATCAAG+TGG | - | chr8_2:13008308-13008327 | Msa1235200:intron | 35.0% | |
| ACAAGCATGGAGACACAAAT+AGG | - | chr8_2:13002614-13002633 | Msa1235200:intron | 40.0% | |
| ! | ATGATGATGTGACATTCAGG+GGG | + | chr8_2:13002678-13002697 | None:intergenic | 40.0% |
| GGGATAAGAGAAAAAGTAGG+AGG | + | chr8_2:13002826-13002845 | None:intergenic | 40.0% | |
| TGTGTGTGAGATAGAAAGTG+AGG | + | chr8_2:13002913-13002932 | None:intergenic | 40.0% | |
| AGGAAAAAGGGTTTGATGGA+GGG | + | chr8_2:13003006-13003025 | None:intergenic | 40.0% | |
| GTAGAGGAAAAAGGGTTTGA+TGG | + | chr8_2:13003010-13003029 | None:intergenic | 40.0% | |
| !!! | TTATTTTTGTGTGAGGCGGA+CGG | + | chr8_2:13003058-13003077 | None:intergenic | 40.0% |
| !!! | GTTTTAAAGAGGATGAGGAG+AGG | + | chr8_2:13003096-13003115 | None:intergenic | 40.0% |
| TTCTGATCGTAATTCCGGAA+CGG | + | chr8_2:13003199-13003218 | None:intergenic | 40.0% | |
| TCATCATATGCTCACCTCAA+AGG | + | chr8_2:13003621-13003640 | None:intergenic | 40.0% | |
| TACTACAACTGGCAGAGTAT+TGG | - | chr8_2:13004332-13004351 | Msa1235200:intron | 40.0% | |
| ! | ACTACAACTGGCAGAGTATT+GGG | - | chr8_2:13004333-13004352 | Msa1235200:intron | 40.0% |
| ATTGAAATCAGTCGCATGAC+AGG | + | chr8_2:13004845-13004864 | None:intergenic | 40.0% | |
| ! | CATGCGACTGATTTCAATAG+TGG | - | chr8_2:13004847-13004866 | Msa1235200:intron | 40.0% |
| CCCCTACTCTTTAATACATG+TGG | - | chr8_2:13006212-13006231 | Msa1235200:intron | 40.0% | |
| CCTCCATCTTATAGTGATTG+AGG | + | chr8_2:13006646-13006665 | None:intergenic | 40.0% | |
| CCTCAATCACTATAAGATGG+AGG | - | chr8_2:13006643-13006662 | Msa1235200:intron | 40.0% | |
| TTTACTTGAGTCATAGGCAC+AGG | - | chr8_2:13006889-13006908 | Msa1235200:intron | 40.0% | |
| TTACTTGAGTCATAGGCACA+GGG | - | chr8_2:13006890-13006909 | Msa1235200:intron | 40.0% | |
| GGTGAGAGAAACGTGAATGA+GGG | + | chr8_2:13002981-13003000 | None:intergenic | 45.0% | |
| AAAAGGGTTTGATGGAGGGA+GGG | + | chr8_2:13003002-13003021 | None:intergenic | 45.0% | |
| AAAAAGGGTTTGATGGAGGG+AGG | + | chr8_2:13003003-13003022 | None:intergenic | 45.0% | |
| GAGGAAAAAGGGTTTGATGG+AGG | + | chr8_2:13003007-13003026 | None:intergenic | 45.0% | |
| TGAGGAGAGGAAGATTATGG+TGG | + | chr8_2:13003083-13003102 | None:intergenic | 45.0% | |
| GGATGAGGAGAGGAAGATTA+TGG | + | chr8_2:13003086-13003105 | None:intergenic | 45.0% | |
| GTTCCGGAATTACGATCAGA+AGG | - | chr8_2:13003198-13003217 | Msa1235200:intron | 45.0% | |
| TCGAGGAAGCAGATTAACCA+AGG | - | chr8_2:13003345-13003364 | Msa1235200:intron | 45.0% | |
| ! | TTTTCCCTCTCCAAATCAGG+TGG | - | chr8_2:13003595-13003614 | Msa1235200:intron | 45.0% |
| TGGAGAGGCAATCAAACAGA+AGG | - | chr8_2:13004070-13004089 | Msa1235200:intron | 45.0% | |
| GCAAAGGTCTATAAACCTGC+AGG | + | chr8_2:13006624-13006643 | None:intergenic | 45.0% | |
| !!! | TTTTAGATATTTTAAATATT+TGG | - | chr8_2:13004256-13004275 | Msa1235200:intron | 5.0% |
| GAATGAGGGTGAGAGAAACG+TGG | + | chr8_2:13002967-13002986 | None:intergenic | 50.0% | |
| GGGTGAGAGAAACGTGAATG+AGG | + | chr8_2:13002982-13003001 | None:intergenic | 50.0% | |
| TGATCGTAATTCCGGAACGG+CGG | + | chr8_2:13003196-13003215 | None:intergenic | 50.0% | |
| !! | AAGGCCACCTGATTTGGAGA+GGG | + | chr8_2:13003602-13003621 | None:intergenic | 50.0% |
| !! | AAAGGCCACCTGATTTGGAG+AGG | + | chr8_2:13003603-13003622 | None:intergenic | 50.0% |
| TCCAAATCAGGTGGCCTTTG+AGG | - | chr8_2:13003604-13003623 | Msa1235200:intron | 50.0% | |
| ACCTCAAAGGCCACCTGATT+TGG | + | chr8_2:13003608-13003627 | None:intergenic | 50.0% | |
| !! | CAACTGGCAGAGTATTGGGT+TGG | - | chr8_2:13004337-13004356 | Msa1235200:intron | 50.0% |
| TACACCACACACTCCATTGG+AGG | + | chr8_2:13005299-13005318 | None:intergenic | 50.0% | |
| CACTACACCACACACTCCAT+TGG | + | chr8_2:13005302-13005321 | None:intergenic | 50.0% | |
| GGGTGAGAGAAACGTGGATG+AGG | + | chr8_2:13002961-13002980 | None:intergenic | 55.0% | |
| GGAAACGAATTCCGGTGTGG+TGG | + | chr8_2:13003175-13003194 | None:intergenic | 55.0% | |
| GGAACGGCGGAAACGAATTC+CGG | + | chr8_2:13003183-13003202 | None:intergenic | 55.0% | |
| GGAATTCGTTTCCGCCGTTC+CGG | - | chr8_2:13003182-13003201 | Msa1235200:intron | 55.0% | |
| CAAGCCTCCAATGGAGTGTG+TGG | - | chr8_2:13005292-13005311 | Msa1235200:intron | 55.0% | |
| GGGTTGAGAGCTCGCCACAT+TGG | + | chr8_2:13002658-13002677 | None:intergenic | 60.0% | |
| ! | GTGAGGCGGACGGAGTTGAT+CGG | + | chr8_2:13003048-13003067 | None:intergenic | 60.0% |
| TTTACCGGCGACCACCACAC+CGG | - | chr8_2:13003161-13003180 | Msa1235200:intron | 60.0% | |
| AATTCCGGTGTGGTGGTCGC+CGG | + | chr8_2:13003168-13003187 | None:intergenic | 60.0% | |
| GGCGGAAACGAATTCCGGTG+TGG | + | chr8_2:13003178-13003197 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 13002465 | 13008413 | 13002465 | ID=Msa1235200;Name=Msa1235200 |
| chr8_2 | mRNA | 13002465 | 13008413 | 13002465 | ID=Msa1235200-mRNA-1;Parent=Msa1235200;Name=Msa1235200-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0.2|0.2|1|1|5|25|113 |
| chr8_2 | exon | 13002465 | 13002603 | 13002465 | ID=Msa1235200-mRNA-1:exon:5074;Parent=Msa1235200-mRNA-1 |
| chr8_2 | exon | 13006787 | 13006845 | 13006787 | ID=Msa1235200-mRNA-1:exon:5073;Parent=Msa1235200-mRNA-1 |
| chr8_2 | exon | 13007512 | 13007550 | 13007512 | ID=Msa1235200-mRNA-1:exon:5072;Parent=Msa1235200-mRNA-1 |
| chr8_2 | exon | 13007659 | 13007721 | 13007659 | ID=Msa1235200-mRNA-1:exon:5071;Parent=Msa1235200-mRNA-1 |
| chr8_2 | exon | 13008347 | 13008413 | 13008347 | ID=Msa1235200-mRNA-1:exon:5070;Parent=Msa1235200-mRNA-1 |
| chr8_2 | CDS | 13008347 | 13008413 | 13008347 | ID=Msa1235200-mRNA-1:cds;Parent=Msa1235200-mRNA-1 |
| chr8_2 | CDS | 13007659 | 13007721 | 13007659 | ID=Msa1235200-mRNA-1:cds;Parent=Msa1235200-mRNA-1 |
| chr8_2 | CDS | 13007512 | 13007550 | 13007512 | ID=Msa1235200-mRNA-1:cds;Parent=Msa1235200-mRNA-1 |
| chr8_2 | CDS | 13006787 | 13006845 | 13006787 | ID=Msa1235200-mRNA-1:cds;Parent=Msa1235200-mRNA-1 |
| chr8_2 | CDS | 13002490 | 13002603 | 13002490 | ID=Msa1235200-mRNA-1:cds;Parent=Msa1235200-mRNA-1 |
| chr8_2 | three_prime_UTR | 13002465 | 13002489 | 13002465 | ID=Msa1235200-mRNA-1:three_prime_utr;Parent=Msa1235200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
