Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1020190 | 0.808111 | 3.636818e-50 | -8.615850e-47 |
| Msa0078900 | Msa1020190 | 0.804628 | 1.971613e-49 | -8.615850e-47 |
| Msa0672690 | Msa1020190 | 0.823601 | 1.268689e-53 | -8.615850e-47 |
| Msa0822870 | Msa1020190 | 0.823401 | 1.412673e-53 | -8.615850e-47 |
| Msa0838580 | Msa1020190 | 0.803001 | 4.292488e-49 | -8.615850e-47 |
| Msa0137300 | Msa1020190 | 0.809346 | 1.980059e-50 | -8.615850e-47 |
| Msa0157290 | Msa1020190 | 0.808082 | 3.688784e-50 | -8.615850e-47 |
| Msa0180500 | Msa1020190 | 0.808733 | 2.678445e-50 | -8.615850e-47 |
| Msa0223010 | Msa1020190 | 0.811140 | 8.126958e-51 | -8.615850e-47 |
| Msa0237070 | Msa1020190 | 0.803575 | 3.265626e-49 | -8.615850e-47 |
| Msa0440750 | Msa1020190 | 0.809866 | 1.530745e-50 | -8.615850e-47 |
| Msa0456840 | Msa1020190 | 0.813367 | 2.652542e-51 | -8.615850e-47 |
| Msa1014540 | Msa1020190 | 0.826058 | 3.340899e-54 | -8.615850e-47 |
| Msa1020190 | Msa1054990 | 0.805757 | 1.144011e-49 | -8.615850e-47 |
| Msa1020190 | Msa1075220 | -0.812552 | 4.003661e-51 | -8.615850e-47 |
| Msa1020190 | Msa1137570 | 0.800954 | 1.130757e-48 | -8.615850e-47 |
| Msa1020190 | Msa1235200 | 0.831325 | 1.779581e-55 | -8.615850e-47 |
| Msa1020190 | Msa1278110 | 0.808913 | 2.451462e-50 | -8.615850e-47 |
| Msa1020190 | Msa1283860 | 0.802880 | 4.547416e-49 | -8.615850e-47 |
| Msa1020190 | Msa1324500 | 0.806216 | 9.162841e-50 | -8.615850e-47 |
| Msa1020190 | Msa1359040 | 0.809265 | 2.060557e-50 | -8.615850e-47 |
| Msa1020190 | Msa1372760 | 0.817103 | 3.922111e-52 | -8.615850e-47 |
| Msa0287650 | Msa1020190 | 0.801236 | 9.905490e-49 | -8.615850e-47 |
| Msa0340450 | Msa1020190 | 0.808260 | 3.380204e-50 | -8.615850e-47 |
| Msa0345970 | Msa1020190 | 0.801520 | 8.664117e-49 | -8.615850e-47 |
| Msa0357340 | Msa1020190 | 0.808827 | 2.557636e-50 | -8.615850e-47 |
| Msa0585230 | Msa1020190 | 0.822132 | 2.789053e-53 | -8.615850e-47 |
| Msa0844490 | Msa1020190 | 0.809948 | 1.469932e-50 | -8.615850e-47 |
| Msa0857640 | Msa1020190 | 0.800911 | 1.154047e-48 | -8.615850e-47 |
| Msa0880140 | Msa1020190 | 0.802643 | 5.090544e-49 | -8.615850e-47 |
| Msa0897330 | Msa1020190 | 0.809671 | 1.686184e-50 | -8.615850e-47 |
| Msa0931520 | Msa1020190 | 0.814477 | 1.510281e-51 | -8.615850e-47 |
| Msa0947660 | Msa1020190 | 0.813204 | 2.880615e-51 | -8.615850e-47 |
| Msa0952720 | Msa1020190 | 0.806397 | 8.389418e-50 | -8.615850e-47 |
| Msa0969520 | Msa1020190 | 0.820477 | 6.717735e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCCCACTTGATGATT+TGG | 0.254005 | 7_1:-42797583 | None:intergenic |
| CACTTGATGATTTGGTGATT+TGG | 0.295699 | 7_1:-42797575 | None:intergenic |
| TTACCTTCTGATCGTAATTC+CGG | 0.336812 | 7_1:-42792474 | None:intergenic |
| CTTAATCGAAGAAACTTTAC+CGG | 0.373555 | 7_1:+42792419 | Msa1020190:intron |
| GGAATTCGTTTCCGCCGTTC+CGG | 0.384074 | 7_1:+42792455 | Msa1020190:CDS |
| AGAGTTCAGATAAATGATAT+TGG | 0.384122 | 7_1:+42793318 | Msa1020190:CDS |
| GGAACGGCGGAAACGAATTC+CGG | 0.413854 | 7_1:-42792453 | None:intergenic |
| ACAAAGTTGTTGAATTGAAG+AGG | 0.541562 | 7_1:+42797547 | Msa1020190:CDS |
| AATTCCGGTGTGGTGGTCGC+CGG | 0.565738 | 7_1:-42792438 | None:intergenic |
| CAAATCACCAAATCATCAAG+TGG | 0.587707 | 7_1:+42797576 | Msa1020190:CDS |
| GTGAAATTTGATGAAATGGA+GGG | 0.603727 | 7_1:+42791793 | None:intergenic |
| TGGAGAGGCAATCAAACAGA+AGG | 0.604393 | 7_1:+42793338 | Msa1020190:CDS |
| GGAAACGAATTCCGGTGTGG+TGG | 0.624336 | 7_1:-42792445 | None:intergenic |
| TTCTGATCGTAATTCCGGAA+CGG | 0.632504 | 7_1:-42792469 | None:intergenic |
| AAATCACCAAATCATCAAGT+GGG | 0.643117 | 7_1:+42797577 | Msa1020190:CDS |
| GTTCCGGAATTACGATCAGA+AGG | 0.644287 | 7_1:+42792471 | Msa1020190:CDS |
| GTTCTTTCAAGAACAAATCG+AGG | 0.644335 | 7_1:+42792601 | Msa1020190:CDS |
| TTTACCGGCGACCACCACAC+CGG | 0.651318 | 7_1:+42792434 | Msa1020190:CDS |
| TCAGATAAATGATATTGGAG+AGG | 0.654158 | 7_1:+42793323 | Msa1020190:CDS |
| TCGAGGAAGCAGATTAACCA+AGG | 0.681630 | 7_1:+42792618 | Msa1020190:CDS |
| GGCGGAAACGAATTCCGGTG+TGG | 0.690128 | 7_1:-42792448 | None:intergenic |
| TGATCGTAATTCCGGAACGG+CGG | 0.697591 | 7_1:-42792466 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATCATTAAAAAATAATTT+TGG | + | chr7_1:42791981-42792000 | Msa1020190:intron | 10.0% |
| !!! | TATGCAAATATTTTAAATTT+TGG | - | chr7_1:42795177-42795196 | None:intergenic | 10.0% |
| !! | ATGTTATTATAAATTAAGAT+GGG | - | chr7_1:42796299-42796318 | None:intergenic | 10.0% |
| !! | AATGTTATTATAAATTAAGA+TGG | - | chr7_1:42796300-42796319 | None:intergenic | 10.0% |
| !! | AAAATACTAACTTAAATAAT+AGG | - | chr7_1:42796617-42796636 | None:intergenic | 10.0% |
| !! | GAAATTTATAAAAAAGAATA+TGG | + | chr7_1:42796744-42796763 | Msa1020190:intron | 10.0% |
| !!! | ATTGATTTACAAATTAAAAA+CGG | - | chr7_1:42796777-42796796 | None:intergenic | 10.0% |
| !! | AAATGAATAAACTTAATATA+TGG | - | chr7_1:42797036-42797055 | None:intergenic | 10.0% |
| !! | ATGAATAAAATTTATCAAAA+TGG | - | chr7_1:42797061-42797080 | None:intergenic | 10.0% |
| !! | ATTGAACAAAAACAATATAT+TGG | - | chr7_1:42792820-42792839 | None:intergenic | 15.0% |
| !! | TTATCTTATTAGTAACTTAT+TGG | + | chr7_1:42792954-42792973 | Msa1020190:intron | 15.0% |
| !!! | CATAGATCTTATTAATTTTA+TGG | + | chr7_1:42792986-42793005 | Msa1020190:intron | 15.0% |
| !!! | TTTCATTTTCATACATTAAA+AGG | + | chr7_1:42793421-42793440 | Msa1020190:intron | 15.0% |
| !! | TTGGTATAGTTATATTAAAT+GGG | - | chr7_1:42794498-42794517 | None:intergenic | 15.0% |
| !! | ATTGGTATAGTTATATTAAA+TGG | - | chr7_1:42794499-42794518 | None:intergenic | 15.0% |
| !!! | TAACTATACCAATTAAATTT+TGG | + | chr7_1:42794506-42794525 | Msa1020190:intron | 15.0% |
| !! | AATTAAACTTTGATAGATAT+AGG | - | chr7_1:42794754-42794773 | None:intergenic | 15.0% |
| !!! | TGTAAATTGTTAATTTTTCT+AGG | - | chr7_1:42794906-42794925 | None:intergenic | 15.0% |
| !! | TTTCAATGTAAAATAAATCA+AGG | - | chr7_1:42795232-42795251 | None:intergenic | 15.0% |
| !! | TTTCATTAAGAAAATGTTAA+AGG | + | chr7_1:42795973-42795992 | Msa1020190:intron | 15.0% |
| !!! | TTTATATCTTTTCATTTTGA+TGG | + | chr7_1:42796001-42796020 | Msa1020190:intron | 15.0% |
| !! | AAATCTAATTCAAATAGAAA+GGG | - | chr7_1:42796053-42796072 | None:intergenic | 15.0% |
| !! | TAAATCTAATTCAAATAGAA+AGG | - | chr7_1:42796054-42796073 | None:intergenic | 15.0% |
| !! | TACTTCATTACTATTTATAT+TGG | + | chr7_1:42796482-42796501 | Msa1020190:intron | 15.0% |
| !! | AATAATAGCATCAAAATAAA+AGG | - | chr7_1:42796603-42796622 | None:intergenic | 15.0% |
| !! | TTGATTTACAAATTAAAAAC+GGG | - | chr7_1:42796776-42796795 | None:intergenic | 15.0% |
| !! | TAGAATCTAATTTACATAAT+TGG | - | chr7_1:42796828-42796847 | None:intergenic | 15.0% |
| !! | TTGATGTTTATAATTGAAAT+TGG | + | chr7_1:42797451-42797470 | Msa1020190:intron | 15.0% |
| !! | ATCTTAATAATATACAAGCA+TGG | + | chr7_1:42791891-42791910 | Msa1020190:intron | 20.0% |
| !! | TATTGTGTGAATACTTAAAA+TGG | - | chr7_1:42792012-42792031 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTGAATTGAAGA+GGG | - | chr7_1:42792066-42792085 | None:intergenic | 20.0% |
| !!! | ATTTGAATTTTGAATTGAAG+AGG | - | chr7_1:42792067-42792086 | None:intergenic | 20.0% |
| !! | TATAGAAAATGATGTTTGTT+GGG | - | chr7_1:42792136-42792155 | None:intergenic | 20.0% |
| !! | ATATAGAAAATGATGTTTGT+TGG | - | chr7_1:42792137-42792156 | None:intergenic | 20.0% |
| !! | AAAGTGAGGAAAAAAAAAAA+AGG | - | chr7_1:42792191-42792210 | None:intergenic | 20.0% |
| !!! | AAATTTGGATTAGATAAATC+TGG | - | chr7_1:42792523-42792542 | None:intergenic | 20.0% |
| !! | AAACCATATAAATGATTTGA+GGG | - | chr7_1:42792749-42792768 | None:intergenic | 20.0% |
| !!! | CATTTATATGGTTTGTTTTT+TGG | + | chr7_1:42792755-42792774 | Msa1020190:intron | 20.0% |
| !!! | TTTTTGGAGAGTTTAAAATT+TGG | + | chr7_1:42792771-42792790 | Msa1020190:intron | 20.0% |
| !! | CTTATAAAAAAATACAACTC+TGG | + | chr7_1:42792923-42792942 | Msa1020190:intron | 20.0% |
| !!! | GATTTTAAATGCAGTAAATT+TGG | + | chr7_1:42793707-42793726 | Msa1020190:intron | 20.0% |
| !! | ACTAATGATTAACATATGTA+AGG | - | chr7_1:42793882-42793901 | None:intergenic | 20.0% |
| !! | TTACATATGTTAATCATTAG+TGG | + | chr7_1:42793881-42793900 | Msa1020190:intron | 20.0% |
| !!! | CAAATTTAGAGTCATTAATA+AGG | - | chr7_1:42794260-42794279 | None:intergenic | 20.0% |
| !! | ATTAATGACTCTAAATTTGT+TGG | + | chr7_1:42794261-42794280 | Msa1020190:intron | 20.0% |
| !! | AGATGATTATAAGAATAATC+TGG | - | chr7_1:42794287-42794306 | None:intergenic | 20.0% |
| !! | AATCAACACCAAAATTTAAT+TGG | - | chr7_1:42794517-42794536 | None:intergenic | 20.0% |
| !!! | TAACCAAATCTTTTCTAAAA+GGG | + | chr7_1:42794654-42794673 | Msa1020190:intron | 20.0% |
| !! | AAGTCATCTTTAAATTCATA+AGG | - | chr7_1:42794777-42794796 | None:intergenic | 20.0% |
| !! | AAGATCATCAAATATGAATT+TGG | + | chr7_1:42794967-42794986 | Msa1020190:intron | 20.0% |
| !!! | TATCTTTTTTCTTTTTTCGA+GGG | - | chr7_1:42795360-42795379 | None:intergenic | 20.0% |
| !!! | TTATCTTTTTTCTTTTTTCG+AGG | - | chr7_1:42795361-42795380 | None:intergenic | 20.0% |
| !! | GAATTCAATATCAAGATTAA+AGG | - | chr7_1:42795438-42795457 | None:intergenic | 20.0% |
| !! | TTCAGTTTACAATAAACAAA+GGG | - | chr7_1:42795515-42795534 | None:intergenic | 20.0% |
| !! | TTTCAGTTTACAATAAACAA+AGG | - | chr7_1:42795516-42795535 | None:intergenic | 20.0% |
| !!! | ATTGATTTAAAGTAGAACTA+TGG | + | chr7_1:42796261-42796280 | Msa1020190:intron | 20.0% |
| !!! | AAAAAAAGAGAGTACAAAAT+AGG | - | chr7_1:42796438-42796457 | None:intergenic | 20.0% |
| !!! | TAGCTATAATATATTCGTTT+TGG | + | chr7_1:42796531-42796550 | Msa1020190:intron | 20.0% |
| !! | TAGATTTAGTAATCTCAAAA+AGG | - | chr7_1:42797138-42797157 | None:intergenic | 20.0% |
| !! | GTTCTTACTATCATCATTTT+AGG | + | chr7_1:42791826-42791845 | Msa1020190:CDS | 25.0% |
| !!! | ACTATCATCATTTTAGGAAA+TGG | + | chr7_1:42791832-42791851 | Msa1020190:CDS | 25.0% |
| !!! | CTATCATCATTTTAGGAAAT+GGG | + | chr7_1:42791833-42791852 | Msa1020190:CDS | 25.0% |
| !!! | TATCATCATTTTAGGAAATG+GGG | + | chr7_1:42791834-42791853 | Msa1020190:CDS | 25.0% |
| !! | TTAATGATGATGTGACATTT+GGG | - | chr7_1:42791971-42791990 | None:intergenic | 25.0% |
| !! | TTTAATGATGATGTGACATT+TGG | - | chr7_1:42791972-42791991 | None:intergenic | 25.0% |
| ! | GATTAGATAAATCTGGATTA+GGG | - | chr7_1:42792516-42792535 | None:intergenic | 25.0% |
| ! | TTGAAATTCAAATATCACCT+TGG | - | chr7_1:42792638-42792657 | None:intergenic | 25.0% |
| ! | AAACAAATTTCATCCCAAAA+TGG | - | chr7_1:42792697-42792716 | None:intergenic | 25.0% |
| ! | CAAACCATATAAATGATTTG+AGG | - | chr7_1:42792750-42792769 | None:intergenic | 25.0% |
| ! | GAACAAAAACAATATATTGG+AGG | - | chr7_1:42792817-42792836 | None:intergenic | 25.0% |
| ! | TCTTATGTTGTATAACTGTT+AGG | - | chr7_1:42793014-42793033 | None:intergenic | 25.0% |
| ! | AGAGTTCAGATAAATGATAT+TGG | + | chr7_1:42793318-42793337 | Msa1020190:CDS | 25.0% |
| !!! | ATAATCCTGCTTTTTAATCA+TGG | + | chr7_1:42793362-42793381 | Msa1020190:intron | 25.0% |
| !! | CATTTTCATACATTAAAAGG+TGG | + | chr7_1:42793424-42793443 | Msa1020190:intron | 25.0% |
| !!! | TTAGTAGTTTTGGATTGATT+TGG | + | chr7_1:42793490-42793509 | Msa1020190:intron | 25.0% |
| ! | CACAAAAACAAAGTAATTGT+CGG | + | chr7_1:42794391-42794410 | Msa1020190:intron | 25.0% |
| ! | ACTTCATAATATGAATGAGA+AGG | - | chr7_1:42794626-42794645 | None:intergenic | 25.0% |
| !! | GTAACCAAATCTTTTCTAAA+AGG | + | chr7_1:42794653-42794672 | Msa1020190:intron | 25.0% |
| !!! | AATCCCTTTTAGAAAAGATT+TGG | - | chr7_1:42794660-42794679 | None:intergenic | 25.0% |
| ! | TGAAACTCATGAGTATTTAT+AGG | + | chr7_1:42795008-42795027 | Msa1020190:intron | 25.0% |
| ! | TTTCATATGAATAAGGACAT+GGG | - | chr7_1:42795059-42795078 | None:intergenic | 25.0% |
| ! | TCATGAGTTTCATATGAATA+AGG | - | chr7_1:42795066-42795085 | None:intergenic | 25.0% |
| !! | TTTTACCATTTTCTTGAGAT+TGG | + | chr7_1:42795144-42795163 | Msa1020190:intron | 25.0% |
| !! | TTTACCATTTTCTTGAGATT+GGG | + | chr7_1:42795145-42795164 | Msa1020190:intron | 25.0% |
| !! | AGCTAACAAAACTTTTAACA+TGG | - | chr7_1:42795708-42795727 | None:intergenic | 25.0% |
| !! | CTATTAATTTTGTTGACAGT+AGG | + | chr7_1:42795726-42795745 | Msa1020190:intron | 25.0% |
| !!! | AAGAGTATTGCTAACAAAAA+TGG | - | chr7_1:42795768-42795787 | None:intergenic | 25.0% |
| ! | GTCAAATTTGAAAACTATTG+TGG | - | chr7_1:42796201-42796220 | None:intergenic | 25.0% |
| ! | ATATACATCTAATGAAGAGT+AGG | - | chr7_1:42796384-42796403 | None:intergenic | 25.0% |
| !! | TTACTTTATTTGAGTAGTGA+TGG | - | chr7_1:42796646-42796665 | None:intergenic | 25.0% |
| ! | CTACTCAAATAAAGTAATGA+AGG | + | chr7_1:42796649-42796668 | Msa1020190:intron | 25.0% |
| ! | ATAAGTAAGTTTCAAACTCA+TGG | - | chr7_1:42796948-42796967 | None:intergenic | 25.0% |
| ! | ATAGATATAGATATGGAATG+AGG | - | chr7_1:42797090-42797109 | None:intergenic | 25.0% |
| ! | CAGATCAATAGATATAGATA+TGG | - | chr7_1:42797097-42797116 | None:intergenic | 25.0% |
| ! | TGCATTTACTAAACCTAAAA+TGG | + | chr7_1:42797214-42797233 | Msa1020190:intron | 25.0% |
| !! | TATGAAACACATACCATTTT+AGG | - | chr7_1:42797230-42797249 | None:intergenic | 25.0% |
| !!! | GTTTTAGATCTTACAAGAAA+TGG | + | chr7_1:42797262-42797281 | Msa1020190:intron | 25.0% |
| !! | GTTCTATTCACCTTTTATTA+CGG | + | chr7_1:42797485-42797504 | Msa1020190:intron | 25.0% |
| ! | AGTAACTTATCCGTAATAAA+AGG | - | chr7_1:42797498-42797517 | None:intergenic | 25.0% |
| ! | TTGATGTGTTCTTAAAAACA+CGG | + | chr7_1:42797653-42797672 | Msa1020190:exon | 25.0% |
| !!! | AATGGGGTTTTGAAAATGAA+TGG | + | chr7_1:42791850-42791869 | Msa1020190:CDS | 30.0% |
| ! | TTTTCAAACTCAATCCAATG+TGG | + | chr7_1:42791931-42791950 | Msa1020190:intron | 30.0% |
| ! | TAATGATGATGTGACATTTG+GGG | - | chr7_1:42791970-42791989 | None:intergenic | 30.0% |
| !!! | TGAATGAGTGAGTTTTAAAG+AGG | - | chr7_1:42792378-42792397 | None:intergenic | 30.0% |
| CTTAATCGAAGAAACTTTAC+CGG | + | chr7_1:42792419-42792438 | Msa1020190:intron | 30.0% | |
| GGATTAGATAAATCTGGATT+AGG | - | chr7_1:42792517-42792536 | None:intergenic | 30.0% | |
| TGCGAAAAAGAAGAGAAATT+TGG | - | chr7_1:42792538-42792557 | None:intergenic | 30.0% | |
| TTCGGATCTGAGAAAAAAAT+GGG | - | chr7_1:42792669-42792688 | None:intergenic | 30.0% | |
| TTTCGGATCTGAGAAAAAAA+TGG | - | chr7_1:42792670-42792689 | None:intergenic | 30.0% | |
| CATCCCTCAAATCATTTATA+TGG | + | chr7_1:42792743-42792762 | Msa1020190:intron | 30.0% | |
| !! | CTCTGATTTTGTTTGTTGAT+AGG | + | chr7_1:42793279-42793298 | Msa1020190:intron | 30.0% |
| TCAGATAAATGATATTGGAG+AGG | + | chr7_1:42793323-42793342 | Msa1020190:CDS | 30.0% | |
| ATAGATTGCTATACTACAAC+TGG | + | chr7_1:42793589-42793608 | Msa1020190:intron | 30.0% | |
| ATGTGATGATAAACAGATTC+TGG | - | chr7_1:42793661-42793680 | None:intergenic | 30.0% | |
| AGATCAAGTGTAATTCTACA+TGG | + | chr7_1:42793939-42793958 | Msa1020190:intron | 30.0% | |
| CTACATGGAAACTACTTTAA+TGG | + | chr7_1:42793954-42793973 | Msa1020190:intron | 30.0% | |
| TAGAGAATTTCTCCTTACTT+TGG | + | chr7_1:42794189-42794208 | Msa1020190:intron | 30.0% | |
| !! | ACTGATATAGTTTTGCTTCT+AGG | - | chr7_1:42794231-42794250 | None:intergenic | 30.0% |
| !!! | CGACAATTACTTTGTTTTTG+TGG | - | chr7_1:42794393-42794412 | None:intergenic | 30.0% |
| AAAAACAAAGTAATTGTCGG+AGG | + | chr7_1:42794394-42794413 | Msa1020190:intron | 30.0% | |
| AAGATGACTTATCAAACTCA+TGG | + | chr7_1:42794787-42794806 | Msa1020190:intron | 30.0% | |
| AGATGACTTATCAAACTCAT+GGG | + | chr7_1:42794788-42794807 | Msa1020190:intron | 30.0% | |
| CATACTCATCAGTTTCAAAT+AGG | - | chr7_1:42794847-42794866 | None:intergenic | 30.0% | |
| GTGAGATAGTTAACTTTGTT+AGG | - | chr7_1:42795034-42795053 | None:intergenic | 30.0% | |
| GTTTCATATGAATAAGGACA+TGG | - | chr7_1:42795060-42795079 | None:intergenic | 30.0% | |
| GTAAAAGATTCTAAACTCAG+TGG | - | chr7_1:42795130-42795149 | None:intergenic | 30.0% | |
| AAATCCCAATCTCAAGAAAA+TGG | - | chr7_1:42795152-42795171 | None:intergenic | 30.0% | |
| !! | ATGATTCATGTGTTGTTTGT+AGG | + | chr7_1:42795251-42795270 | Msa1020190:intron | 30.0% |
| ! | ATTCCAACTGATTTCAGAAA+AGG | - | chr7_1:42795287-42795306 | None:intergenic | 30.0% |
| !!! | TTTTCTGAAATCAGTTGGAA+TGG | + | chr7_1:42795286-42795305 | Msa1020190:intron | 30.0% |
| !! | TGTGTTACTTATCTTGTCTT+GGG | - | chr7_1:42795335-42795354 | None:intergenic | 30.0% |
| !! | ATGTGTTACTTATCTTGTCT+TGG | - | chr7_1:42795336-42795355 | None:intergenic | 30.0% |
| TCCACATGTATTAAAGAGTA+GGG | - | chr7_1:42795484-42795503 | None:intergenic | 30.0% | |
| ATCCACATGTATTAAAGAGT+AGG | - | chr7_1:42795485-42795504 | None:intergenic | 30.0% | |
| CTGAAAATTAGTGCACAATA+AGG | + | chr7_1:42795530-42795549 | Msa1020190:intron | 30.0% | |
| AGTATTGCTAACAAAAATGG+TGG | - | chr7_1:42795765-42795784 | None:intergenic | 30.0% | |
| ! | TTGACATGGCTAATGATTTT+AGG | + | chr7_1:42795786-42795805 | Msa1020190:intron | 30.0% |
| !! | TTTAGGTTGTTGTATGAGAT+TGG | + | chr7_1:42795803-42795822 | Msa1020190:intron | 30.0% |
| !!! | AATTTTGAAATCTTTCCTGC+AGG | + | chr7_1:42795874-42795893 | Msa1020190:intron | 30.0% |
| ACAGCGAATAAAAATGTATG+TGG | + | chr7_1:42795947-42795966 | Msa1020190:intron | 30.0% | |
| !! | ATTTTGATGGCTGAATTTCT+TGG | + | chr7_1:42796014-42796033 | Msa1020190:intron | 30.0% |
| !! | TTTTGATGGCTGAATTTCTT+GGG | + | chr7_1:42796015-42796034 | Msa1020190:intron | 30.0% |
| !!! | TAGCTTTTGAGATTGTATCA+TGG | - | chr7_1:42796083-42796102 | None:intergenic | 30.0% |
| ! | TATTCATGTCATTTGGACAA+TGG | - | chr7_1:42796106-42796125 | None:intergenic | 30.0% |
| ACCTAATTTACTTGAGTCAT+AGG | + | chr7_1:42796151-42796170 | Msa1020190:intron | 30.0% | |
| AGTAGGCATTCATAATCAAA+TGG | - | chr7_1:42796367-42796386 | None:intergenic | 30.0% | |
| AAACTTACTTATCAAGCTCA+GGG | + | chr7_1:42796956-42796975 | Msa1020190:intron | 30.0% | |
| TTAACACATACTAATTGTCG+AGG | - | chr7_1:42797172-42797191 | None:intergenic | 30.0% | |
| GCAAAAAATCGCATCTTAAA+TGG | + | chr7_1:42797318-42797337 | Msa1020190:intron | 30.0% | |
| TAACTCATAATCAAGTTCTG+AGG | + | chr7_1:42797360-42797379 | Msa1020190:intron | 30.0% | |
| ACAAAGTTGTTGAATTGAAG+AGG | + | chr7_1:42797547-42797566 | Msa1020190:CDS | 30.0% | |
| AAATCACCAAATCATCAAGT+GGG | + | chr7_1:42797577-42797596 | Msa1020190:CDS | 30.0% | |
| ! | AAATTTCCCACTTGATGATT+TGG | - | chr7_1:42797586-42797605 | None:intergenic | 30.0% |
| ! | TCATCAAGTGGGAAATTTTA+TGG | + | chr7_1:42797588-42797607 | Msa1020190:CDS | 30.0% |
| ! | AATGATGATGTGACATTTGG+GGG | - | chr7_1:42791969-42791988 | None:intergenic | 35.0% |
| GGATAAGAGAAAAAGTAGGA+GGG | - | chr7_1:42792115-42792134 | None:intergenic | 35.0% | |
| GTTGGGATAAGAGAAAAAGT+AGG | - | chr7_1:42792119-42792138 | None:intergenic | 35.0% | |
| GAAAGAAGGTAGAGGAAAAA+GGG | - | chr7_1:42792289-42792308 | None:intergenic | 35.0% | |
| AGAAAGAAGGTAGAGGAAAA+AGG | - | chr7_1:42792290-42792309 | None:intergenic | 35.0% | |
| GAAATGAAGAAAGAAGGTAG+AGG | - | chr7_1:42792297-42792316 | None:intergenic | 35.0% | |
| TGAACGGAAATGAAGAAAGA+AGG | - | chr7_1:42792303-42792322 | None:intergenic | 35.0% | |
| !!! | GGTTTTATTTTTGTGTGAGG+CGG | - | chr7_1:42792333-42792352 | None:intergenic | 35.0% |
| !!! | GGTGGTTTTATTTTTGTGTG+AGG | - | chr7_1:42792336-42792355 | None:intergenic | 35.0% |
| !!! | AGTGAGTTTTAAAGAGGATG+AGG | - | chr7_1:42792372-42792391 | None:intergenic | 35.0% |
| TTACCTTCTGATCGTAATTC+CGG | - | chr7_1:42792477-42792496 | None:intergenic | 35.0% | |
| !! | AGTTCATTCATTTTTCGTGC+AGG | + | chr7_1:42792579-42792598 | Msa1020190:intron | 35.0% |
| GTTCTTTCAAGAACAAATCG+AGG | + | chr7_1:42792601-42792620 | Msa1020190:CDS | 35.0% | |
| !! | CTGAGAAAAAAATGGGTTAG+AGG | - | chr7_1:42792662-42792681 | None:intergenic | 35.0% |
| ! | AGATCCGAAAATAGCCATTT+TGG | + | chr7_1:42792680-42792699 | Msa1020190:intron | 35.0% |
| !! | GATCCGAAAATAGCCATTTT+GGG | + | chr7_1:42792681-42792700 | Msa1020190:intron | 35.0% |
| !! | CATCCCAAAATGGCTATTTT+CGG | - | chr7_1:42792687-42792706 | None:intergenic | 35.0% |
| !!! | TTTTTTTCCCTCTCCAAATC+AGG | + | chr7_1:42792861-42792880 | Msa1020190:intron | 35.0% |
| AAATGTGTAAGAGCTTGAGT+TGG | - | chr7_1:42793052-42793071 | None:intergenic | 35.0% | |
| ! | TACACATTTTGTACAGCATG+AGG | + | chr7_1:42793063-42793082 | Msa1020190:intron | 35.0% |
| TCAAGCCATGATTAAAAAGC+AGG | - | chr7_1:42793370-42793389 | None:intergenic | 35.0% | |
| !! | GAGTGTTGTGTTAGTAGTTT+TGG | + | chr7_1:42793480-42793499 | Msa1020190:intron | 35.0% |
| ! | TCCTTACTTTGGTCTGTTTT+TGG | + | chr7_1:42794200-42794219 | Msa1020190:intron | 35.0% |
| TCCAAAAACAGACCAAAGTA+AGG | - | chr7_1:42794204-42794223 | None:intergenic | 35.0% | |
| ! | ATTAGTTTACAAGCCTCCAA+TGG | + | chr7_1:42794551-42794570 | Msa1020190:intron | 35.0% |
| GTCATATGAAACTGATGAGA+AGG | + | chr7_1:42794874-42794893 | Msa1020190:intron | 35.0% | |
| TACATGTTAGGTCAGAACAT+GGG | - | chr7_1:42794930-42794949 | None:intergenic | 35.0% | |
| ATACATGTTAGGTCAGAACA+TGG | - | chr7_1:42794931-42794950 | None:intergenic | 35.0% | |
| GTCAGTTACACATACATGTT+AGG | - | chr7_1:42794942-42794961 | None:intergenic | 35.0% | |
| TCATGCAAATCACATGAGTT+AGG | - | chr7_1:42795100-42795119 | None:intergenic | 35.0% | |
| !!! | GTTCCTTTTCTGAAATCAGT+TGG | + | chr7_1:42795281-42795300 | Msa1020190:intron | 35.0% |
| !! | GAATGGACAAGATGTTTTGA+TGG | + | chr7_1:42795303-42795322 | Msa1020190:intron | 35.0% |
| CCACATGTATTAAAGAGTAG+GGG | - | chr7_1:42795483-42795502 | None:intergenic | 35.0% | |
| TGCAAAATGGCATATAGAGT+AGG | - | chr7_1:42795652-42795671 | None:intergenic | 35.0% | |
| TGTTAGCAATACTCTTGACA+TGG | + | chr7_1:42795772-42795791 | Msa1020190:intron | 35.0% | |
| TCTTATAGTGATTGAGGCAA+AGG | - | chr7_1:42795908-42795927 | None:intergenic | 35.0% | |
| TTGCCTCAATCACTATAAGA+TGG | + | chr7_1:42795908-42795927 | Msa1020190:intron | 35.0% | |
| TGACAGCTATTCATGTCATT+TGG | - | chr7_1:42796113-42796132 | None:intergenic | 35.0% | |
| GCCTATGACTCAAGTAAATT+AGG | - | chr7_1:42796155-42796174 | None:intergenic | 35.0% | |
| TGAAAACTATTGTGGTCATG+TGG | - | chr7_1:42796193-42796212 | None:intergenic | 35.0% | |
| ! | TTTGACAGCCACTTTAATTG+AGG | + | chr7_1:42796215-42796234 | Msa1020190:intron | 35.0% |
| ! | TTGACAGCCACTTTAATTGA+GGG | + | chr7_1:42796216-42796235 | Msa1020190:intron | 35.0% |
| TATGACTCCCTCAATTAAAG+TGG | - | chr7_1:42796226-42796245 | None:intergenic | 35.0% | |
| TGAGGGAGTCATATTGAATA+AGG | + | chr7_1:42796233-42796252 | Msa1020190:intron | 35.0% | |
| GAGGGAGTCATATTGAATAA+GGG | + | chr7_1:42796234-42796253 | Msa1020190:intron | 35.0% | |
| ! | CTTTATTTGAGTAGTGATGG+TGG | - | chr7_1:42796643-42796662 | None:intergenic | 35.0% |
| AGTAATGAAGGCTCATACTT+TGG | + | chr7_1:42796661-42796680 | Msa1020190:intron | 35.0% | |
| GAAACTTACTTATCAAGCTC+AGG | + | chr7_1:42796955-42796974 | Msa1020190:intron | 35.0% | |
| AATGTGATCTGAGTTTCTCA+TGG | + | chr7_1:42797392-42797411 | Msa1020190:intron | 35.0% | |
| TTGTGTTCTTATTACTCTGC+AGG | + | chr7_1:42797521-42797540 | Msa1020190:intron | 35.0% | |
| !! | CACTTGATGATTTGGTGATT+TGG | - | chr7_1:42797578-42797597 | None:intergenic | 35.0% |
| CAAATCACCAAATCATCAAG+TGG | + | chr7_1:42797576-42797595 | Msa1020190:CDS | 35.0% | |
| TTGAAAATGAATGGTGCGAC+TGG | + | chr7_1:42791859-42791878 | Msa1020190:intron | 40.0% | |
| TGAAAATGAATGGTGCGACT+GGG | + | chr7_1:42791860-42791879 | Msa1020190:intron | 40.0% | |
| ACAAGCATGGAGACACAAAT+AGG | + | chr7_1:42791904-42791923 | Msa1020190:intron | 40.0% | |
| ! | ATGATGATGTGACATTTGGG+GGG | - | chr7_1:42791968-42791987 | None:intergenic | 40.0% |
| GGGATAAGAGAAAAAGTAGG+AGG | - | chr7_1:42792116-42792135 | None:intergenic | 40.0% | |
| TGTGTGTGAGATAGAAAGTG+AGG | - | chr7_1:42792205-42792224 | None:intergenic | 40.0% | |
| AGGAAAAAGGGTTTGATGGA+GGG | - | chr7_1:42792277-42792296 | None:intergenic | 40.0% | |
| GTAGAGGAAAAAGGGTTTGA+TGG | - | chr7_1:42792281-42792300 | None:intergenic | 40.0% | |
| !!! | TTATTTTTGTGTGAGGCGGA+CGG | - | chr7_1:42792329-42792348 | None:intergenic | 40.0% |
| !!! | GTTTTAAAGAGGATGAGGAG+AGG | - | chr7_1:42792367-42792386 | None:intergenic | 40.0% |
| TTCTGATCGTAATTCCGGAA+CGG | - | chr7_1:42792472-42792491 | None:intergenic | 40.0% | |
| TCATCATATGCTCACCTCAA+AGG | - | chr7_1:42792890-42792909 | None:intergenic | 40.0% | |
| TACTACAACTGGCAGAGTAT+TGG | + | chr7_1:42793600-42793619 | Msa1020190:intron | 40.0% | |
| ! | ACTACAACTGGCAGAGTATT+GGG | + | chr7_1:42793601-42793620 | Msa1020190:intron | 40.0% |
| ATTGAAATCAGTCGCATGAC+AGG | - | chr7_1:42794113-42794132 | None:intergenic | 40.0% | |
| ! | CATGCGACTGATTTCAATAG+TGG | + | chr7_1:42794115-42794134 | Msa1020190:intron | 40.0% |
| CCCCTACTCTTTAATACATG+TGG | + | chr7_1:42795480-42795499 | Msa1020190:intron | 40.0% | |
| !! | GCCATTTTGCACATGAATTC+TGG | + | chr7_1:42795661-42795680 | Msa1020190:intron | 40.0% |
| GCCAGAATTCATGTGCAAAA+TGG | - | chr7_1:42795665-42795684 | None:intergenic | 40.0% | |
| CCTCCATCTTATAGTGATTG+AGG | - | chr7_1:42795914-42795933 | None:intergenic | 40.0% | |
| CCTCAATCACTATAAGATGG+AGG | + | chr7_1:42795911-42795930 | Msa1020190:intron | 40.0% | |
| TTTACTTGAGTCATAGGCAC+AGG | + | chr7_1:42796157-42796176 | Msa1020190:intron | 40.0% | |
| TTACTTGAGTCATAGGCACA+GGG | + | chr7_1:42796158-42796177 | Msa1020190:intron | 40.0% | |
| GAAAATGAATGGTGCGACTG+GGG | + | chr7_1:42791861-42791880 | Msa1020190:intron | 45.0% | |
| AAAAGGGTTTGATGGAGGGA+GGG | - | chr7_1:42792273-42792292 | None:intergenic | 45.0% | |
| AAAAAGGGTTTGATGGAGGG+AGG | - | chr7_1:42792274-42792293 | None:intergenic | 45.0% | |
| GAGGAAAAAGGGTTTGATGG+AGG | - | chr7_1:42792278-42792297 | None:intergenic | 45.0% | |
| TGAGGAGAGGAAGATTATGG+TGG | - | chr7_1:42792354-42792373 | None:intergenic | 45.0% | |
| GGATGAGGAGAGGAAGATTA+TGG | - | chr7_1:42792357-42792376 | None:intergenic | 45.0% | |
| GTTCCGGAATTACGATCAGA+AGG | + | chr7_1:42792471-42792490 | Msa1020190:CDS | 45.0% | |
| TCGAGGAAGCAGATTAACCA+AGG | + | chr7_1:42792618-42792637 | Msa1020190:CDS | 45.0% | |
| ! | TTTTCCCTCTCCAAATCAGG+TGG | + | chr7_1:42792864-42792883 | Msa1020190:intron | 45.0% |
| TGGAGAGGCAATCAAACAGA+AGG | + | chr7_1:42793338-42793357 | Msa1020190:CDS | 45.0% | |
| GCAAAGGTCTATAAACCTGC+AGG | - | chr7_1:42795892-42795911 | None:intergenic | 45.0% | |
| !!! | TTTTAGATATTTTAAATATT+TGG | + | chr7_1:42793524-42793543 | Msa1020190:intron | 5.0% |
| GGGTGAGAGAAACGTGAATG+AGG | - | chr7_1:42792253-42792272 | None:intergenic | 50.0% | |
| TGATCGTAATTCCGGAACGG+CGG | - | chr7_1:42792469-42792488 | None:intergenic | 50.0% | |
| !! | AAGGCCACCTGATTTGGAGA+GGG | - | chr7_1:42792871-42792890 | None:intergenic | 50.0% |
| !! | AAAGGCCACCTGATTTGGAG+AGG | - | chr7_1:42792872-42792891 | None:intergenic | 50.0% |
| TCCAAATCAGGTGGCCTTTG+AGG | + | chr7_1:42792873-42792892 | Msa1020190:intron | 50.0% | |
| ACCTCAAAGGCCACCTGATT+TGG | - | chr7_1:42792877-42792896 | None:intergenic | 50.0% | |
| !! | CAACTGGCAGAGTATTGGGT+TGG | + | chr7_1:42793605-42793624 | Msa1020190:intron | 50.0% |
| TACACCACACACTCCATTGG+AGG | - | chr7_1:42794567-42794586 | None:intergenic | 50.0% | |
| CACTACACCACACACTCCAT+TGG | - | chr7_1:42794570-42794589 | None:intergenic | 50.0% | |
| GGAAACGAATTCCGGTGTGG+TGG | - | chr7_1:42792448-42792467 | None:intergenic | 55.0% | |
| GGAACGGCGGAAACGAATTC+CGG | - | chr7_1:42792456-42792475 | None:intergenic | 55.0% | |
| GGAATTCGTTTCCGCCGTTC+CGG | + | chr7_1:42792455-42792474 | Msa1020190:CDS | 55.0% | |
| CAAGCCTCCAATGGAGTGTG+TGG | + | chr7_1:42794560-42794579 | Msa1020190:intron | 55.0% | |
| GGGTTGAGAGCTCGCCACAT+TGG | - | chr7_1:42791948-42791967 | None:intergenic | 60.0% | |
| GTGAGGCGGACGGAGTTGAA+CGG | - | chr7_1:42792319-42792338 | None:intergenic | 60.0% | |
| TTTACCGGCGACCACCACAC+CGG | + | chr7_1:42792434-42792453 | Msa1020190:CDS | 60.0% | |
| AATTCCGGTGTGGTGGTCGC+CGG | - | chr7_1:42792441-42792460 | None:intergenic | 60.0% | |
| GGCGGAAACGAATTCCGGTG+TGG | - | chr7_1:42792451-42792470 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 42791808 | 42797681 | 42791808 | ID=Msa1020190;Name=Msa1020190 |
| chr7_1 | mRNA | 42791808 | 42797681 | 42791808 | ID=Msa1020190-mRNA-1;Parent=Msa1020190;Name=Msa1020190-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0|0.2|0.2|1|1|5|25|112 |
| chr7_1 | exon | 42791808 | 42791871 | 42791808 | ID=Msa1020190-mRNA-1:exon:8408;Parent=Msa1020190-mRNA-1 |
| chr7_1 | exon | 42792430 | 42792492 | 42792430 | ID=Msa1020190-mRNA-1:exon:8409;Parent=Msa1020190-mRNA-1 |
| chr7_1 | exon | 42792601 | 42792639 | 42792601 | ID=Msa1020190-mRNA-1:exon:8410;Parent=Msa1020190-mRNA-1 |
| chr7_1 | exon | 42793301 | 42793359 | 42793301 | ID=Msa1020190-mRNA-1:exon:8411;Parent=Msa1020190-mRNA-1 |
| chr7_1 | exon | 42797543 | 42797681 | 42797543 | ID=Msa1020190-mRNA-1:exon:8412;Parent=Msa1020190-mRNA-1 |
| chr7_1 | CDS | 42791808 | 42791871 | 42791808 | ID=Msa1020190-mRNA-1:cds;Parent=Msa1020190-mRNA-1 |
| chr7_1 | CDS | 42792430 | 42792492 | 42792430 | ID=Msa1020190-mRNA-1:cds;Parent=Msa1020190-mRNA-1 |
| chr7_1 | CDS | 42792601 | 42792639 | 42792601 | ID=Msa1020190-mRNA-1:cds;Parent=Msa1020190-mRNA-1 |
| chr7_1 | CDS | 42793301 | 42793359 | 42793301 | ID=Msa1020190-mRNA-1:cds;Parent=Msa1020190-mRNA-1 |
| chr7_1 | CDS | 42797543 | 42797656 | 42797543 | ID=Msa1020190-mRNA-1:cds;Parent=Msa1020190-mRNA-1 |
| chr7_1 | three_prime_UTR | 42797657 | 42797681 | 42797657 | ID=Msa1020190-mRNA-1:three_prime_utr;Parent=Msa1020190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
