Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235430 | AAA61914.1 | 86.081 | 273 | 2 | 1 | 1 | 237 | 1 | 273 | 3.95e-150 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235430 | sp|Q01806|LEC1_MEDTR | 81.467 | 259 | 10 | 2 | 1 | 221 | 3 | 261 | 2.42e-144 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1175410 | Msa1235430 | 0.831660 | 1.471548e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235430 | MtrunA17_Chr8g0345451 | 81.467 | 259 | 10 | 2 | 1 | 221 | 3 | 261 | 1.78e-145 | 407 |
| Msa1235430 | MtrunA17_Chr3g0104481 | 62.602 | 246 | 78 | 7 | 1 | 237 | 1 | 241 | 4.36e-88 | 260 |
| Msa1235430 | MtrunA17_Chr4g0011021 | 53.509 | 228 | 66 | 5 | 22 | 213 | 33 | 256 | 1.94e-72 | 222 |
| Msa1235430 | MtrunA17_Chr8g0367061 | 33.203 | 256 | 120 | 8 | 10 | 219 | 11 | 261 | 4.51e-35 | 125 |
| Msa1235430 | MtrunA17_Chr5g0411741 | 33.459 | 266 | 113 | 6 | 17 | 219 | 14 | 278 | 3.25e-34 | 124 |
| Msa1235430 | MtrunA17_Chr8g0367051 | 31.923 | 260 | 122 | 8 | 10 | 219 | 11 | 265 | 1.10e-32 | 119 |
| Msa1235430 | MtrunA17_Chr5g0411751 | 32.959 | 267 | 114 | 7 | 17 | 219 | 14 | 279 | 3.29e-31 | 115 |
| Msa1235430 | MtrunA17_Chr5g0411771 | 34.000 | 250 | 109 | 9 | 23 | 219 | 41 | 287 | 7.09e-31 | 115 |
| Msa1235430 | MtrunA17_Chr3g0096161 | 34.363 | 259 | 128 | 6 | 7 | 226 | 13 | 268 | 2.49e-30 | 114 |
| Msa1235430 | MtrunA17_Chr8g0367071 | 32.046 | 259 | 126 | 7 | 9 | 219 | 17 | 273 | 6.69e-30 | 117 |
| Msa1235430 | MtrunA17_Chr5g0411761 | 33.333 | 240 | 108 | 6 | 31 | 219 | 48 | 286 | 1.70e-29 | 111 |
| Msa1235430 | MtrunA17_Chr3g0087611 | 35.341 | 249 | 110 | 10 | 12 | 214 | 18 | 261 | 2.30e-28 | 108 |
| Msa1235430 | MtrunA17_Chr3g0100011 | 36.170 | 235 | 112 | 4 | 1 | 199 | 28 | 260 | 3.17e-28 | 110 |
| Msa1235430 | MtrunA17_Chr3g0100021 | 37.500 | 232 | 102 | 8 | 24 | 216 | 14 | 241 | 3.26e-28 | 108 |
| Msa1235430 | MtrunA17_Chr8g0367031 | 35.146 | 239 | 96 | 11 | 31 | 217 | 26 | 257 | 9.71e-26 | 101 |
| Msa1235430 | MtrunA17_Chr4g0049611 | 30.798 | 263 | 123 | 7 | 6 | 221 | 16 | 266 | 2.00e-25 | 104 |
| Msa1235430 | MtrunA17_Chr4g0049601 | 32.975 | 279 | 124 | 11 | 7 | 234 | 16 | 282 | 4.85e-25 | 103 |
| Msa1235430 | MtrunA17_Chr1g0197791 | 33.476 | 233 | 120 | 8 | 12 | 214 | 18 | 245 | 1.99e-24 | 97.8 |
| Msa1235430 | MtrunA17_Chr5g0411731 | 32.099 | 243 | 109 | 8 | 31 | 219 | 35 | 275 | 8.55e-24 | 96.3 |
| Msa1235430 | MtrunA17_Chr3g0095861 | 32.830 | 265 | 133 | 8 | 10 | 232 | 15 | 276 | 8.73e-24 | 96.3 |
| Msa1235430 | MtrunA17_Chr3g0095851 | 32.830 | 265 | 133 | 9 | 10 | 232 | 16 | 277 | 9.46e-24 | 96.3 |
| Msa1235430 | MtrunA17_Chr5g0411721 | 31.452 | 248 | 117 | 7 | 22 | 219 | 38 | 282 | 1.83e-23 | 95.5 |
| Msa1235430 | MtrunA17_Chr4g0049581 | 29.496 | 278 | 126 | 9 | 2 | 221 | 21 | 286 | 5.89e-22 | 94.4 |
| Msa1235430 | MtrunA17_Chr1g0197771 | 31.855 | 248 | 127 | 8 | 6 | 214 | 11 | 255 | 6.67e-22 | 91.3 |
| Msa1235430 | MtrunA17_Chr3g0100031 | 31.727 | 249 | 129 | 6 | 10 | 220 | 10 | 255 | 1.66e-21 | 89.7 |
| Msa1235430 | MtrunA17_Chr8g0366941 | 32.328 | 232 | 112 | 7 | 32 | 219 | 33 | 263 | 2.55e-21 | 90.5 |
| Msa1235430 | MtrunA17_Chr8g0366991 | 29.811 | 265 | 136 | 7 | 1 | 220 | 101 | 360 | 1.15e-20 | 90.5 |
| Msa1235430 | MtrunA17_Chr8g0367011 | 28.519 | 270 | 131 | 8 | 9 | 219 | 29 | 295 | 5.77e-19 | 83.6 |
| Msa1235430 | MtrunA17_Chr1g0197801 | 31.148 | 244 | 119 | 10 | 6 | 220 | 11 | 234 | 7.77e-19 | 82.4 |
| Msa1235430 | MtrunA17_Chr7g0274651 | 28.063 | 253 | 129 | 8 | 18 | 221 | 25 | 273 | 3.98e-18 | 83.2 |
| Msa1235430 | MtrunA17_Chr4g0027601 | 30.263 | 228 | 128 | 10 | 10 | 220 | 17 | 230 | 1.71e-16 | 76.3 |
| Msa1235430 | MtrunA17_Chr8g0367021 | 30.045 | 223 | 104 | 9 | 44 | 219 | 41 | 258 | 2.75e-16 | 75.9 |
| Msa1235430 | MtrunA17_Chr1g0197761 | 30.120 | 249 | 121 | 11 | 15 | 219 | 21 | 260 | 1.58e-15 | 73.9 |
| Msa1235430 | MtrunA17_Chr4g0049551 | 29.412 | 187 | 87 | 5 | 67 | 208 | 73 | 259 | 4.21e-15 | 73.9 |
| Msa1235430 | MtrunA17_Chr4g0027651 | 28.761 | 226 | 143 | 7 | 6 | 219 | 27 | 246 | 6.41e-15 | 72.4 |
| Msa1235430 | MtrunA17_Chr7g0274661 | 29.082 | 196 | 95 | 5 | 67 | 219 | 85 | 279 | 1.37e-14 | 72.8 |
| Msa1235430 | MtrunA17_Chr1g0170201 | 29.268 | 205 | 91 | 7 | 55 | 213 | 79 | 275 | 2.73e-13 | 68.9 |
| Msa1235430 | MtrunA17_Chr4g0049561 | 27.559 | 254 | 126 | 9 | 15 | 214 | 12 | 261 | 1.90e-12 | 66.2 |
| Msa1235430 | MtrunA17_Chr1g0197751 | 42.982 | 114 | 59 | 5 | 109 | 219 | 73 | 183 | 5.02e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235430 | AT5G65600.1 | 28.889 | 225 | 112 | 7 | 32 | 208 | 38 | 262 | 1.35e-13 | 70.1 |
| Msa1235430 | AT4G29050.2 | 29.911 | 224 | 95 | 9 | 48 | 214 | 53 | 271 | 1.93e-11 | 63.9 |
| Msa1235430 | AT4G29050.1 | 29.911 | 224 | 95 | 9 | 48 | 214 | 39 | 257 | 2.05e-11 | 63.5 |
Find 46 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGAAGATTAGATTCTTT+TGG | 0.238719 | 8_2:+13426039 | Msa1235440:intron |
| CAGAACATGATATTCGTTAT+TGG | 0.243919 | 8_2:-13424935 | Msa1235430:CDS |
| ATTCTGCTCCTATTCATATC+TGG | 0.244024 | 8_2:-13425941 | Msa1235430:CDS |
| CCAATATGTCTATTTATCTT+TGG | 0.248398 | 8_2:+13425188 | Msa1235440:intron |
| CTTCATCTTGTTATTCAATA+AGG | 0.258451 | 8_2:-13426111 | Msa1235430:CDS |
| TCTGCAACATTGGTACTATA+AGG | 0.302134 | 8_2:+13425858 | Msa1235440:intron |
| AAGTACTACACCATGGGTTT+TGG | 0.317266 | 8_2:-13425138 | Msa1235430:CDS |
| CTTCCCTGTTGAGGTAGTTA+TGG | 0.356339 | 8_2:+13426010 | Msa1235440:intron |
| CTGCAACATTGGTACTATAA+GGG | 0.370832 | 8_2:+13425859 | Msa1235440:intron |
| TTGCTATCCCAGATATGAAT+AGG | 0.375848 | 8_2:+13425933 | Msa1235440:intron |
| CATATCTGGGATAGCAAAAC+AGG | 0.382485 | 8_2:-13425927 | Msa1235430:CDS |
| CCAAAGATAAATAGACATAT+TGG | 0.401782 | 8_2:-13425188 | Msa1235430:CDS |
| TCACTAAGGATATAACTATC+AGG | 0.422347 | 8_2:+13425032 | None:intergenic |
| TAACAAGATGAAGACTGTTA+AGG | 0.442595 | 8_2:+13426121 | Msa1235440:intron |
| AAGGCAGTCAAGAACTCTAT+TGG | 0.450440 | 8_2:-13425975 | Msa1235430:CDS |
| AATGTTGTGATAAGGTTTGA+TGG | 0.451394 | 8_2:-13425098 | Msa1235430:CDS |
| AATGCCATAACTACCTCAAC+AGG | 0.458397 | 8_2:-13426014 | Msa1235430:CDS |
| TTCTGCTCCTATTCATATCT+GGG | 0.459119 | 8_2:-13425940 | Msa1235430:CDS |
| GAGAGGCTAATGTTGTGATA+AGG | 0.465611 | 8_2:-13425106 | Msa1235430:CDS |
| GCTAAACTTTGTGATGGTAA+AGG | 0.469149 | 8_2:+13426067 | Msa1235440:intron |
| GGCCAAACCATCTGCAACAT+TGG | 0.479659 | 8_2:+13425848 | Msa1235440:intron |
| GGTACTATAAGGGGCAGTTA+TGG | 0.483439 | 8_2:+13425869 | Msa1235440:intron |
| AATAGAGTTCTTGACTGCCT+TGG | 0.497569 | 8_2:+13425977 | Msa1235440:intron |
| ATATTGTTCCTGAGTGGGTA+AGG | 0.498309 | 8_2:-13424992 | Msa1235430:CDS |
| TGAAAGATATTGTTCCTGAG+TGG | 0.520340 | 8_2:-13424998 | Msa1235430:CDS |
| GAAAGATATTGTTCCTGAGT+GGG | 0.522902 | 8_2:-13424997 | Msa1235430:CDS |
| ATATAACTATCAGGAAGTCC+TGG | 0.527887 | 8_2:+13425041 | None:intergenic |
| ATCGGTTTCTCAGCAGCCAC+TGG | 0.531685 | 8_2:-13424969 | Msa1235430:CDS |
| TATAGTACCAATGTTGCAGA+TGG | 0.532177 | 8_2:-13425855 | Msa1235430:intron |
| GTCAATAAGTACTACACCAT+GGG | 0.541013 | 8_2:-13425144 | Msa1235430:CDS |
| GATGAAGACTGTTAAGGAGA+TGG | 0.541381 | 8_2:+13426127 | Msa1235440:intron |
| GTTCCTGAGTGGGTAAGGAT+CGG | 0.550149 | 8_2:-13424987 | Msa1235430:CDS |
| AGGTAGTTATGGCATTGCCT+TGG | 0.557576 | 8_2:+13426021 | Msa1235440:intron |
| AAGTTGTAACTTCCCTGTTG+AGG | 0.568898 | 8_2:+13426001 | Msa1235440:intron |
| CAAAAGAATCTAATCTTCCA+AGG | 0.573374 | 8_2:-13426038 | Msa1235430:CDS |
| TCAGGAACAATATCTTTCAA+AGG | 0.574670 | 8_2:+13425002 | None:intergenic |
| AAACCGATCCTTACCCACTC+AGG | 0.577788 | 8_2:+13424984 | None:intergenic |
| TGCAACATTGGTACTATAAG+GGG | 0.579494 | 8_2:+13425860 | Msa1235440:intron |
| GTCTTGGCTAAACTTTGTGA+TGG | 0.583455 | 8_2:+13426061 | Msa1235440:intron |
| TCAAAGGCACAACATCACTA+AGG | 0.583560 | 8_2:+13425018 | None:intergenic |
| TTCTGCGAATTCTGCACCAG+TGG | 0.611525 | 8_2:+13424953 | None:intergenic |
| ATAAGGGGCAGTTATGGCAA+AGG | 0.637611 | 8_2:+13425875 | Msa1235440:intron |
| AGTCAATAAGTACTACACCA+TGG | 0.664426 | 8_2:-13425145 | Msa1235430:CDS |
| AGGGAAGTTACAACTTACCA+AGG | 0.684795 | 8_2:-13425994 | Msa1235430:CDS |
| GGATAGCAAAACAGGAGACG+TGG | 0.685503 | 8_2:-13425919 | Msa1235430:CDS |
| ATGCCATAACTACCTCAACA+GGG | 0.753652 | 8_2:-13426013 | Msa1235430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATTTTTTTTAAGATG+GGG | + | chr8_2:13425286-13425305 | Msa1235440:intron | 10.0% |
| !!! | AATTTTAAATGATTGATTTT+TGG | - | chr8_2:13425620-13425639 | Msa1235430:intron | 10.0% |
| !!! | TATATTTTAGTTTATTTTGA+TGG | - | chr8_2:13425673-13425692 | Msa1235430:intron | 10.0% |
| !! | AATTAATTATGCAAATTCTA+GGG | + | chr8_2:13425317-13425336 | Msa1235440:intron | 15.0% |
| !! | AAATTAATTATGCAAATTCT+AGG | + | chr8_2:13425318-13425337 | Msa1235440:intron | 15.0% |
| !! | TAGAATTTGCATAATTAATT+TGG | - | chr8_2:13425317-13425336 | Msa1235430:intron | 15.0% |
| !! | TGAACAAGAATGATTAAAAT+TGG | + | chr8_2:13425411-13425430 | Msa1235440:intron | 20.0% |
| !!! | ATTTTAGTTTATTTTGATGG+CGG | - | chr8_2:13425676-13425695 | Msa1235430:intron | 20.0% |
| !!! | CATTGTTGTTATTAAAAACT+AGG | + | chr8_2:13426129-13426148 | Msa1235440:intron | 20.0% |
| !!! | CTTCATCTTGTTATTCAATA+AGG | - | chr8_2:13424907-13424926 | Msa1235430:CDS | 25.0% |
| !!! | TTATTTTTTTTAAGATGGGG+TGG | + | chr8_2:13425283-13425302 | Msa1235440:intron | 25.0% |
| ! | AGAATGATTAAAATTGGCAA+AGG | + | chr8_2:13425405-13425424 | Msa1235440:intron | 25.0% |
| ! | TGTTAAATTGAGAAACAAGA+TGG | - | chr8_2:13425439-13425458 | Msa1235430:intron | 25.0% |
| ! | AATATAAACTGACATGCTAT+CGG | + | chr8_2:13425480-13425499 | Msa1235440:intron | 25.0% |
| ! | CATGTCAGTTTATATTGAAA+GGG | - | chr8_2:13425484-13425503 | Msa1235430:intron | 25.0% |
| !! | TAGACACTTTTCATAATACT+TGG | - | chr8_2:13425804-13425823 | Msa1235430:intron | 25.0% |
| !! | AGACACTTTTCATAATACTT+GGG | - | chr8_2:13425805-13425824 | Msa1235430:intron | 25.0% |
| ! | CCAATATGTCTATTTATCTT+TGG | + | chr8_2:13425833-13425852 | Msa1235440:intron | 25.0% |
| ! | CCAAAGATAAATAGACATAT+TGG | - | chr8_2:13425830-13425849 | Msa1235430:intron | 25.0% |
| TAACAAGATGAAGACTGTTA+AGG | + | chr8_2:13424900-13424919 | None:intergenic | 30.0% | |
| ! | AGATTAGATTCTTTTGGTCT+TGG | + | chr8_2:13424976-13424995 | None:intergenic | 30.0% |
| ! | CTTGGAAGATTAGATTCTTT+TGG | + | chr8_2:13424982-13425001 | None:intergenic | 30.0% |
| CAAAAGAATCTAATCTTCCA+AGG | - | chr8_2:13424980-13424999 | Msa1235430:CDS | 30.0% | |
| GTGTACTAGACAAGAAAAAT+TGG | + | chr8_2:13425370-13425389 | Msa1235440:intron | 30.0% | |
| GCATGTCAGTTTATATTGAA+AGG | - | chr8_2:13425483-13425502 | Msa1235430:intron | 30.0% | |
| ! | ATTGATGATTTCAAGTCACT+CGG | - | chr8_2:13425539-13425558 | Msa1235430:intron | 30.0% |
| AATGTTGTGATAAGGTTTGA+TGG | - | chr8_2:13425920-13425939 | Msa1235430:CDS | 30.0% | |
| TCACTAAGGATATAACTATC+AGG | + | chr8_2:13425989-13426008 | Msa1235440:intron | 30.0% | |
| TCAGGAACAATATCTTTCAA+AGG | + | chr8_2:13426019-13426038 | Msa1235440:intron | 30.0% | |
| CAGAACATGATATTCGTTAT+TGG | - | chr8_2:13426083-13426102 | Msa1235430:CDS | 30.0% | |
| GCTAAACTTTGTGATGGTAA+AGG | + | chr8_2:13424954-13424973 | None:intergenic | 35.0% | |
| ATTCTGCTCCTATTCATATC+TGG | - | chr8_2:13425077-13425096 | Msa1235430:CDS | 35.0% | |
| TTCTGCTCCTATTCATATCT+GGG | - | chr8_2:13425078-13425097 | Msa1235430:CDS | 35.0% | |
| TTGCTATCCCAGATATGAAT+AGG | + | chr8_2:13425088-13425107 | None:intergenic | 35.0% | |
| TGCAACATTGGTACTATAAG+GGG | + | chr8_2:13425161-13425180 | Msa1235440:intron | 35.0% | |
| CTGCAACATTGGTACTATAA+GGG | + | chr8_2:13425162-13425181 | Msa1235440:intron | 35.0% | |
| TCTGCAACATTGGTACTATA+AGG | + | chr8_2:13425163-13425182 | Msa1235440:intron | 35.0% | |
| TATAGTACCAATGTTGCAGA+TGG | - | chr8_2:13425163-13425182 | Msa1235430:CDS | 35.0% | |
| GAGCCAGACAAAAAAATTTG+GGG | + | chr8_2:13425705-13425724 | Msa1235440:intron | 35.0% | |
| GGAGCCAGACAAAAAAATTT+GGG | + | chr8_2:13425706-13425725 | Msa1235440:intron | 35.0% | |
| AGTCAATAAGTACTACACCA+TGG | - | chr8_2:13425873-13425892 | Msa1235430:CDS | 35.0% | |
| GTCAATAAGTACTACACCAT+GGG | - | chr8_2:13425874-13425893 | Msa1235430:CDS | 35.0% | |
| !!! | AGTGTAGTTTTGTCTTATCC+AGG | - | chr8_2:13425959-13425978 | Msa1235430:CDS | 35.0% |
| ATATAACTATCAGGAAGTCC+TGG | + | chr8_2:13425980-13425999 | Msa1235440:intron | 35.0% | |
| TGAAAGATATTGTTCCTGAG+TGG | - | chr8_2:13426020-13426039 | Msa1235430:CDS | 35.0% | |
| GAAAGATATTGTTCCTGAGT+GGG | - | chr8_2:13426021-13426040 | Msa1235430:CDS | 35.0% | |
| GATGAAGACTGTTAAGGAGA+TGG | + | chr8_2:13424894-13424913 | None:intergenic | 40.0% | |
| GTCTTGGCTAAACTTTGTGA+TGG | + | chr8_2:13424960-13424979 | None:intergenic | 40.0% | |
| AATGCCATAACTACCTCAAC+AGG | - | chr8_2:13425004-13425023 | Msa1235430:CDS | 40.0% | |
| ATGCCATAACTACCTCAACA+GGG | - | chr8_2:13425005-13425024 | Msa1235430:CDS | 40.0% | |
| AAGTTGTAACTTCCCTGTTG+AGG | + | chr8_2:13425020-13425039 | None:intergenic | 40.0% | |
| AGGGAAGTTACAACTTACCA+AGG | - | chr8_2:13425024-13425043 | Msa1235430:CDS | 40.0% | |
| AATAGAGTTCTTGACTGCCT+TGG | + | chr8_2:13425044-13425063 | None:intergenic | 40.0% | |
| AAGGCAGTCAAGAACTCTAT+TGG | - | chr8_2:13425043-13425062 | Msa1235430:CDS | 40.0% | |
| ! | CATATCTGGGATAGCAAAAC+AGG | - | chr8_2:13425091-13425110 | Msa1235430:CDS | 40.0% |
| TACCAATGTTGCAGATGGTT+TGG | - | chr8_2:13425168-13425187 | Msa1235430:CDS | 40.0% | |
| GATACTCAGCCACAAAACAT+CGG | - | chr8_2:13425211-13425230 | Msa1235430:CDS | 40.0% | |
| ATACTCAGCCACAAAACATC+GGG | - | chr8_2:13425212-13425231 | Msa1235430:CDS | 40.0% | |
| CCAGACAAAAAAATTTGGGG+TGG | + | chr8_2:13425702-13425721 | Msa1235440:intron | 40.0% | |
| !!! | CCACCCCAAATTTTTTTGTC+TGG | - | chr8_2:13425699-13425718 | Msa1235430:intron | 40.0% |
| CGGAGCCAGACAAAAAAATT+TGG | + | chr8_2:13425707-13425726 | Msa1235440:intron | 40.0% | |
| ! | AAGTACTACACCATGGGTTT+TGG | - | chr8_2:13425880-13425899 | Msa1235430:CDS | 40.0% |
| !!! | ACACCATGGGTTTTGGAAAA+TGG | - | chr8_2:13425887-13425906 | Msa1235430:CDS | 40.0% |
| ! | CTTCCATTTTCCAAAACCCA+TGG | + | chr8_2:13425893-13425912 | Msa1235440:intron | 40.0% |
| !!! | GGTTTTGGAAAATGGAAGAG+AGG | - | chr8_2:13425895-13425914 | Msa1235430:CDS | 40.0% |
| GAGAGGCTAATGTTGTGATA+AGG | - | chr8_2:13425912-13425931 | Msa1235430:CDS | 40.0% | |
| ! | TCAAAGGCACAACATCACTA+AGG | + | chr8_2:13426003-13426022 | Msa1235440:intron | 40.0% |
| ATATTGTTCCTGAGTGGGTA+AGG | - | chr8_2:13426026-13426045 | Msa1235430:CDS | 40.0% | |
| AGGTAGTTATGGCATTGCCT+TGG | + | chr8_2:13425000-13425019 | None:intergenic | 45.0% | |
| CTTCCCTGTTGAGGTAGTTA+TGG | + | chr8_2:13425011-13425030 | None:intergenic | 45.0% | |
| ATAAGGGGCAGTTATGGCAA+AGG | + | chr8_2:13425146-13425165 | None:intergenic | 45.0% | |
| GGTACTATAAGGGGCAGTTA+TGG | + | chr8_2:13425152-13425171 | Msa1235440:intron | 45.0% | |
| ! | TTTGGCCTTCTTCATTGCAC+CGG | - | chr8_2:13425186-13425205 | Msa1235430:CDS | 45.0% |
| !!! | TTTTGTGGCTGAGTATCGAC+CGG | + | chr8_2:13425208-13425227 | Msa1235440:intron | 45.0% |
| !!! | TTTTTAAGATGGGGTGGCCA+AGG | + | chr8_2:13425277-13425296 | Msa1235440:intron | 45.0% |
| ! | ATGCTATCGGCTAGAAACTC+AGG | + | chr8_2:13425467-13425486 | Msa1235440:intron | 45.0% |
| !!! | AAATTTATTTTTTTTAAGAT+GGG | + | chr8_2:13425287-13425306 | Msa1235440:intron | 5.0% |
| !!! | AAAATTTATTTTTTTTAAGA+TGG | + | chr8_2:13425288-13425307 | Msa1235440:intron | 5.0% |
| GGATAGCAAAACAGGAGACG+TGG | - | chr8_2:13425099-13425118 | Msa1235430:CDS | 50.0% | |
| GGCCAAACCATCTGCAACAT+TGG | + | chr8_2:13425173-13425192 | Msa1235440:intron | 50.0% | |
| ATCGACCGGTGCAATGAAGA+AGG | + | chr8_2:13425194-13425213 | Msa1235440:intron | 50.0% | |
| GTTCCTGAGTGGGTAAGGAT+CGG | - | chr8_2:13426031-13426050 | Msa1235430:CDS | 50.0% | |
| AAACCGATCCTTACCCACTC+AGG | + | chr8_2:13426037-13426056 | Msa1235440:intron | 50.0% | |
| TTCTGCGAATTCTGCACCAG+TGG | + | chr8_2:13426068-13426087 | Msa1235440:intron | 50.0% | |
| CTCAGCCACAAAACATCGGG+CGG | - | chr8_2:13425215-13425234 | Msa1235430:CDS | 55.0% | |
| TCAGCCACAAAACATCGGGC+GGG | - | chr8_2:13425216-13425235 | Msa1235430:CDS | 55.0% | |
| !! | TTTTTGTCTGGCTCCGCCAC+TGG | - | chr8_2:13425711-13425730 | Msa1235430:intron | 55.0% |
| ! | ATCGGTTTCTCAGCAGCCAC+TGG | - | chr8_2:13426049-13426068 | Msa1235430:CDS | 55.0% |
| ! | CACTGGCGGGCAGGATTTCT+CGG | - | chr8_2:13425728-13425747 | Msa1235430:intron | 60.0% |
| ! | GCTGCCCGCCCGATGTTTTG+TGG | + | chr8_2:13425223-13425242 | Msa1235440:intron | 65.0% |
| AAACATCGGGCGGGCAGCAC+TGG | - | chr8_2:13425225-13425244 | Msa1235430:CDS | 65.0% | |
| ! | TTGTCTGGCTCCGCCACTGG+CGG | - | chr8_2:13425714-13425733 | Msa1235430:intron | 65.0% |
| GAAATCCTGCCCGCCAGTGG+CGG | + | chr8_2:13425727-13425746 | Msa1235440:intron | 65.0% | |
| CGAGAAATCCTGCCCGCCAG+TGG | + | chr8_2:13425730-13425749 | Msa1235440:intron | 65.0% | |
| !! | GGGCAGCACTGGCGGAACCA+GGG | - | chr8_2:13425236-13425255 | Msa1235430:intron | 70.0% |
| !! | GGCAGCACTGGCGGAACCAG+GGG | - | chr8_2:13425237-13425256 | Msa1235430:intron | 70.0% |
| !! | GCAGCACTGGCGGAACCAGG+GGG | - | chr8_2:13425238-13425257 | Msa1235430:intron | 70.0% |
| GCGGAACCAGGGGGTGGCAA+GGG | - | chr8_2:13425247-13425266 | Msa1235430:intron | 70.0% | |
| CGGAACCAGGGGGTGGCAAG+GGG | - | chr8_2:13425248-13425267 | Msa1235430:intron | 70.0% | |
| GGAACCAGGGGGTGGCAAGG+GGG | - | chr8_2:13425249-13425268 | Msa1235430:intron | 70.0% | |
| ! | TGTCTGGCTCCGCCACTGGC+GGG | - | chr8_2:13425715-13425734 | Msa1235430:intron | 70.0% |
| ! | CATCGGGCGGGCAGCACTGG+CGG | - | chr8_2:13425228-13425247 | Msa1235430:CDS | 75.0% |
| !! | CGGGCAGCACTGGCGGAACC+AGG | - | chr8_2:13425235-13425254 | Msa1235430:intron | 75.0% |
| ! | GCACTGGCGGAACCAGGGGG+TGG | - | chr8_2:13425241-13425260 | Msa1235430:intron | 75.0% |
| GGCGGAACCAGGGGGTGGCA+AGG | - | chr8_2:13425246-13425265 | Msa1235430:intron | 75.0% | |
| GGGGTGGCAAGGGGGAGCCT+TGG | - | chr8_2:13425257-13425276 | Msa1235430:intron | 75.0% | |
| ! | GGCTCCCCCTTGCCACCCCC+TGG | + | chr8_2:13425256-13425275 | Msa1235440:intron | 80.0% |
| !! | TGGCTCCGCCACTGGCGGGC+AGG | - | chr8_2:13425719-13425738 | Msa1235430:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 13424860 | 13426180 | 13424860 | ID=Msa1235430;Name=Msa1235430 |
| chr8_2 | mRNA | 13424860 | 13426180 | 13424860 | ID=Msa1235430-mRNA-1;Parent=Msa1235430;Name=Msa1235430-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|237 |
| chr8_2 | exon | 13425856 | 13426180 | 13425856 | ID=Msa1235430-mRNA-1:exon:5183;Parent=Msa1235430-mRNA-1 |
| chr8_2 | exon | 13424860 | 13425248 | 13424860 | ID=Msa1235430-mRNA-1:exon:5182;Parent=Msa1235430-mRNA-1 |
| chr8_2 | CDS | 13425856 | 13426180 | 13425856 | ID=Msa1235430-mRNA-1:cds;Parent=Msa1235430-mRNA-1 |
| chr8_2 | CDS | 13424860 | 13425248 | 13424860 | ID=Msa1235430-mRNA-1:cds;Parent=Msa1235430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
