Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236810 | KEH18701.1 | 87.931 | 580 | 43 | 2 | 24 | 576 | 3 | 582 | 0.0 | 1043 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236810 | sp|A0A314KSQ4|JAR6_NICAT | 64.696 | 575 | 175 | 3 | 29 | 575 | 5 | 579 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236810 | A0A072TNA7 | 87.931 | 580 | 43 | 2 | 24 | 576 | 3 | 582 | 0.0 | 1043 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0760130 | Msa1236810 | 0.800976 | 1.119463e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236810 | MtrunA17_Chr8g0347391 | 87.931 | 580 | 43 | 2 | 24 | 576 | 3 | 582 | 0.0 | 1043 |
| Msa1236810 | MtrunA17_Chr8g0347381 | 84.870 | 575 | 60 | 2 | 29 | 576 | 1 | 575 | 0.0 | 999 |
| Msa1236810 | MtrunA17_Chr8g0347421 | 84.886 | 569 | 59 | 2 | 29 | 570 | 1 | 569 | 0.0 | 984 |
| Msa1236810 | MtrunA17_Chr7g0275471 | 69.948 | 579 | 143 | 3 | 29 | 576 | 1 | 579 | 0.0 | 845 |
| Msa1236810 | MtrunA17_Chr8g0347431 | 79.250 | 400 | 71 | 1 | 189 | 576 | 2 | 401 | 0.0 | 670 |
| Msa1236810 | MtrunA17_Chr5g0401641 | 37.113 | 582 | 320 | 9 | 33 | 574 | 15 | 590 | 4.80e-130 | 393 |
| Msa1236810 | MtrunA17_Chr8g0361551 | 35.751 | 579 | 323 | 10 | 39 | 572 | 15 | 589 | 2.00e-121 | 371 |
| Msa1236810 | MtrunA17_Chr5g0421331 | 36.155 | 567 | 317 | 10 | 40 | 572 | 21 | 576 | 3.04e-120 | 367 |
| Msa1236810 | MtrunA17_Chr2g0318991 | 35.897 | 585 | 317 | 10 | 39 | 572 | 14 | 591 | 7.93e-120 | 367 |
| Msa1236810 | MtrunA17_Chr8g0352391 | 58.117 | 308 | 89 | 3 | 273 | 576 | 1 | 272 | 1.52e-116 | 347 |
| Msa1236810 | MtrunA17_Chr1g0195771 | 36.364 | 561 | 307 | 12 | 39 | 551 | 54 | 612 | 1.98e-112 | 349 |
| Msa1236810 | MtrunA17_Chr4g0022401 | 41.071 | 392 | 200 | 6 | 37 | 397 | 17 | 408 | 5.36e-99 | 307 |
| Msa1236810 | MtrunA17_Chr5g0401631 | 39.895 | 381 | 202 | 7 | 212 | 574 | 1 | 372 | 3.91e-93 | 291 |
| Msa1236810 | MtrunA17_Chr4g0023301 | 33.673 | 490 | 274 | 9 | 126 | 573 | 12 | 492 | 2.46e-90 | 287 |
| Msa1236810 | MtrunA17_Chr7g0259291 | 30.208 | 576 | 338 | 16 | 39 | 562 | 5 | 568 | 5.18e-74 | 246 |
| Msa1236810 | MtrunA17_Chr1g0169871 | 63.068 | 176 | 49 | 3 | 331 | 490 | 139 | 314 | 1.11e-68 | 225 |
| Msa1236810 | MtrunA17_Chr1g0169871 | 75.000 | 64 | 16 | 0 | 38 | 101 | 37 | 100 | 1.52e-23 | 102 |
| Msa1236810 | MtrunA17_Chr8g0347441 | 74.242 | 132 | 34 | 0 | 29 | 160 | 1 | 132 | 2.41e-65 | 209 |
| Msa1236810 | MtrunA17_Chr4g0022391 | 50.562 | 178 | 86 | 1 | 398 | 575 | 11 | 186 | 2.94e-60 | 198 |
| Msa1236810 | MtrunA17_Chr8g0352401 | 72.500 | 120 | 33 | 0 | 38 | 157 | 1 | 120 | 1.44e-55 | 183 |
| Msa1236810 | MtrunA17_Chr7g0259401 | 33.333 | 225 | 107 | 6 | 198 | 406 | 53 | 250 | 1.44e-29 | 117 |
| Msa1236810 | MtrunA17_Chr5g0401621 | 43.396 | 106 | 60 | 0 | 33 | 138 | 15 | 120 | 1.06e-21 | 92.8 |
| Msa1236810 | MtrunA17_Chr4g0023291 | 47.619 | 84 | 44 | 0 | 39 | 122 | 30 | 113 | 1.84e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236810 | AT2G46370.4 | 61.765 | 578 | 189 | 5 | 28 | 575 | 11 | 586 | 0.0 | 743 |
| Msa1236810 | AT2G46370.1 | 61.698 | 577 | 189 | 5 | 29 | 575 | 1 | 575 | 0.0 | 740 |
| Msa1236810 | AT2G46370.2 | 61.698 | 577 | 189 | 5 | 29 | 575 | 1 | 575 | 0.0 | 740 |
| Msa1236810 | AT2G46370.3 | 62.048 | 498 | 159 | 3 | 106 | 575 | 1 | 496 | 0.0 | 655 |
| Msa1236810 | AT4G03400.2 | 45.128 | 585 | 272 | 9 | 39 | 576 | 9 | 591 | 4.77e-173 | 503 |
| Msa1236810 | AT4G03400.1 | 45.128 | 585 | 272 | 9 | 39 | 576 | 9 | 591 | 4.77e-173 | 503 |
| Msa1236810 | AT4G27260.1 | 37.752 | 596 | 312 | 12 | 30 | 572 | 7 | 596 | 1.01e-128 | 390 |
| Msa1236810 | AT1G23160.1 | 37.543 | 578 | 308 | 12 | 37 | 573 | 13 | 578 | 3.81e-127 | 385 |
| Msa1236810 | AT2G23170.1 | 37.544 | 570 | 316 | 8 | 40 | 574 | 21 | 585 | 1.60e-126 | 384 |
| Msa1236810 | AT2G14960.1 | 37.587 | 572 | 307 | 11 | 40 | 574 | 21 | 579 | 1.28e-124 | 379 |
| Msa1236810 | AT4G37390.1 | 37.088 | 577 | 312 | 11 | 40 | 572 | 22 | 591 | 1.41e-124 | 379 |
| Msa1236810 | AT1G59500.1 | 38.502 | 574 | 302 | 13 | 40 | 572 | 22 | 585 | 5.07e-124 | 378 |
| Msa1236810 | AT5G54510.1 | 36.585 | 574 | 311 | 10 | 46 | 572 | 29 | 596 | 4.02e-121 | 371 |
| Msa1236810 | AT5G13320.3 | 36.442 | 579 | 317 | 11 | 36 | 572 | 5 | 574 | 2.47e-120 | 367 |
| Msa1236810 | AT5G13320.1 | 36.442 | 579 | 317 | 11 | 36 | 572 | 5 | 574 | 2.47e-120 | 367 |
| Msa1236810 | AT1G48660.1 | 35.284 | 564 | 327 | 9 | 42 | 572 | 7 | 565 | 2.51e-120 | 367 |
| Msa1236810 | AT5G13320.2 | 36.442 | 579 | 317 | 11 | 36 | 572 | 20 | 589 | 4.41e-120 | 367 |
| Msa1236810 | AT5G51470.1 | 37.197 | 578 | 315 | 11 | 31 | 572 | 6 | 571 | 5.36e-119 | 364 |
| Msa1236810 | AT1G48660.2 | 35.097 | 567 | 327 | 9 | 42 | 572 | 7 | 568 | 1.13e-118 | 363 |
| Msa1236810 | AT2G47750.1 | 36.552 | 580 | 323 | 12 | 33 | 572 | 3 | 577 | 1.02e-113 | 351 |
| Msa1236810 | AT5G13360.1 | 35.579 | 579 | 322 | 13 | 37 | 572 | 9 | 579 | 1.63e-111 | 345 |
| Msa1236810 | AT5G13360.2 | 35.579 | 579 | 322 | 13 | 37 | 572 | 9 | 579 | 1.63e-111 | 345 |
| Msa1236810 | AT5G13360.3 | 35.579 | 579 | 322 | 13 | 37 | 572 | 87 | 657 | 1.14e-110 | 345 |
| Msa1236810 | AT5G13370.1 | 35.424 | 590 | 322 | 17 | 32 | 572 | 1 | 580 | 2.83e-109 | 340 |
| Msa1236810 | AT5G13350.1 | 33.898 | 590 | 331 | 17 | 32 | 572 | 1 | 580 | 1.04e-108 | 338 |
| Msa1236810 | AT5G13350.2 | 33.898 | 590 | 331 | 17 | 32 | 572 | 1 | 580 | 1.04e-108 | 338 |
| Msa1236810 | AT1G28130.1 | 34.725 | 599 | 317 | 14 | 37 | 572 | 9 | 596 | 1.14e-106 | 333 |
| Msa1236810 | AT5G13380.1 | 34.555 | 573 | 320 | 14 | 45 | 572 | 47 | 609 | 5.86e-103 | 324 |
| Msa1236810 | AT5G51470.2 | 36.646 | 483 | 263 | 8 | 126 | 572 | 6 | 481 | 3.99e-94 | 297 |
| Msa1236810 | AT1G48670.1 | 33.455 | 550 | 303 | 14 | 44 | 572 | 10 | 517 | 6.31e-93 | 295 |
| Msa1236810 | AT1G48670.2 | 36.750 | 400 | 225 | 9 | 194 | 572 | 14 | 406 | 7.05e-85 | 270 |
| Msa1236810 | AT1G28130.2 | 34.658 | 453 | 241 | 10 | 165 | 572 | 11 | 453 | 4.14e-81 | 262 |
| Msa1236810 | AT1G48690.1 | 33.511 | 188 | 105 | 3 | 42 | 213 | 7 | 190 | 2.06e-23 | 98.2 |
Find 121 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATGCCTTGAAGCTTTC+AGG | 0.188228 | 8_2:+16013566 | None:intergenic |
| GGAAACACTGAAGAAGATTT+TGG | 0.215335 | 8_2:-16013645 | Msa1236810:CDS |
| TCAGAACATTTGAACAAGTT+TGG | 0.223044 | 8_2:-16012369 | Msa1236810:CDS |
| CCTAATGCTAAGTATGTTCT+AGG | 0.223934 | 8_2:-16012175 | Msa1236810:CDS |
| AACATAGTGTCCTGGTTCTT+TGG | 0.254133 | 8_2:+16010949 | None:intergenic |
| CATAATGCTCAAGAATCTTC+TGG | 0.275515 | 8_2:+16010771 | None:intergenic |
| ATTGGTCACTTACAAAGATT+TGG | 0.278435 | 8_2:-16013540 | Msa1236810:CDS |
| CTTGAGCATTATGTTGGATT+AGG | 0.283059 | 8_2:-16010761 | Msa1236810:CDS |
| GCTAACTCAGGAGCCTCTTT+AGG | 0.283945 | 8_2:+16012034 | None:intergenic |
| CCTCTGTTGACTTCTGAATA+TGG | 0.289061 | 8_2:-16012091 | Msa1236810:CDS |
| CCTAGAACATACTTAGCATT+AGG | 0.297424 | 8_2:+16012175 | None:intergenic |
| GTTGTTAGTTGAGGAGAAAA+TGG | 0.315180 | 8_2:-16011005 | Msa1236810:CDS |
| CAGAACATTTGAACAAGTTT+GGG | 0.318569 | 8_2:-16012368 | Msa1236810:CDS |
| ATTCCTTTGAATCAACTTGA+TGG | 0.320686 | 8_2:-16011971 | Msa1236810:CDS |
| CAGGACACTATGTTATCTTC+TGG | 0.331531 | 8_2:-16010940 | Msa1236810:CDS |
| TGGATCAAGTTAGCTAGTTC+AGG | 0.340099 | 8_2:+16012250 | None:intergenic |
| TCAACTATTCTATTGATATA+AGG | 0.342032 | 8_2:+16013515 | None:intergenic |
| TTGCAGGCTTATACAGATAT+AGG | 0.345650 | 8_2:-16011171 | Msa1236810:intron |
| AAGTTAGCTAGTTCAGGATT+TGG | 0.373912 | 8_2:+16012256 | None:intergenic |
| GCTGAATACTTGCAGAGTTT+AGG | 0.375997 | 8_2:-16013608 | Msa1236810:CDS |
| CAAAGTGTTGCAAATATTGT+TGG | 0.376494 | 8_2:-16010687 | Msa1236810:CDS |
| TGATGAATGTTGCACATGTT+TGG | 0.385814 | 8_2:-16010885 | Msa1236810:CDS |
| TAGAGTGATTGGTGAAAATC+TGG | 0.387996 | 8_2:+16012475 | None:intergenic |
| CTTAAGGAAATATCAGTGAT+TGG | 0.397201 | 8_2:+16013461 | None:intergenic |
| AACTGATCCTGAAAGCTTCA+AGG | 0.401122 | 8_2:-16013573 | Msa1236810:CDS |
| AATGCATAGGATTGAGCAAT+TGG | 0.406780 | 8_2:-16012222 | Msa1236810:CDS |
| CTAGAACATACTTAGCATTA+GGG | 0.409837 | 8_2:+16012176 | None:intergenic |
| TCCGAACAAGTCGGAGTTCA+AGG | 0.425031 | 8_2:+16010804 | None:intergenic |
| GGACTGAATATTACATCATC+TGG | 0.427889 | 8_2:+16012496 | None:intergenic |
| AGCAAATTATCACAAACAAA+AGG | 0.430347 | 8_2:-16012610 | Msa1236810:CDS |
| GCAAATTATCACAAACAAAA+GGG | 0.434836 | 8_2:-16012609 | Msa1236810:CDS |
| CTGCAAAGAAACTTGATCTC+TGG | 0.436174 | 8_2:+16011106 | None:intergenic |
| CAATCACTGATATTTCCTTA+AGG | 0.436796 | 8_2:-16013460 | Msa1236810:intron |
| CAACAATATTTGCAACACTT+TGG | 0.436954 | 8_2:+16010688 | None:intergenic |
| TGCAACACTTTGGTGTTTGT+AGG | 0.437781 | 8_2:+16010698 | None:intergenic |
| AAGATTCTTGAGCATTATGT+TGG | 0.450012 | 8_2:-16010767 | Msa1236810:CDS |
| CTTGTTCCTAAAGACAAAAG+AGG | 0.450622 | 8_2:+16013264 | None:intergenic |
| GAATCAACTTGATGGAACTA+AGG | 0.452348 | 8_2:-16011963 | Msa1236810:CDS |
| TATATCAATAGAATAGTTGA+TGG | 0.455629 | 8_2:-16013512 | Msa1236810:CDS |
| GTTTGAAGGACATACAGATA+TGG | 0.455935 | 8_2:+16013837 | None:intergenic |
| CAATGTTGATTGTGAGCATA+AGG | 0.455989 | 8_2:+16011077 | None:intergenic |
| TTCAAGACACCTAGGTGTAT+TGG | 0.458890 | 8_2:-16010722 | Msa1236810:CDS |
| GAAAGTGACAGTTATTCAAT+CGG | 0.460946 | 8_2:+16010440 | None:intergenic |
| AATTCAAAGTAAGCAATTTG+AGG | 0.463474 | 8_2:+16011995 | None:intergenic |
| TTGCAGAGTTTAGGACTCAA+TGG | 0.466761 | 8_2:-16013599 | Msa1236810:CDS |
| AATATGGTGCTTCTGAGGGT+TGG | 0.467338 | 8_2:-16012075 | Msa1236810:CDS |
| TGCAGCTCTGGTACTAGTCA+AGG | 0.468076 | 8_2:-16013349 | Msa1236810:intron |
| TTTCTCCTCAACTAACAACT+TGG | 0.471374 | 8_2:+16011009 | None:intergenic |
| TGATCTCTGGAGCTGAGTTA+TGG | 0.471692 | 8_2:+16011119 | None:intergenic |
| GTTCCATCAAGTTGATTCAA+AGG | 0.473335 | 8_2:+16011968 | None:intergenic |
| TTCTGAATATGGTGCTTCTG+AGG | 0.477242 | 8_2:-16012080 | Msa1236810:CDS |
| CCCTTGAACTCCGACTTGTT+CGG | 0.477568 | 8_2:-16010805 | Msa1236810:CDS |
| GAGAGGCTAACAAAGGATGC+TGG | 0.479734 | 8_2:-16013680 | Msa1236810:CDS |
| AGGGATCATGACAGGTTCAA+TGG | 0.486740 | 8_2:-16012155 | Msa1236810:CDS |
| TGAAAAGTAGTCCACATAAG+AGG | 0.487540 | 8_2:+16012446 | None:intergenic |
| AGAGGTGACAGTAGAGTGAT+TGG | 0.487873 | 8_2:+16012464 | None:intergenic |
| AAGCAGAACTAAAATAGCTC+TGG | 0.487883 | 8_2:+16010654 | None:intergenic |
| GACATAGCAATTCTAATGGA+TGG | 0.489863 | 8_2:+16012292 | None:intergenic |
| GGAGATGCGGTAAAGGTCAC+GGG | 0.492799 | 8_2:-16011145 | Msa1236810:CDS |
| ACAAATGTGTTCAGAAATCC+AGG | 0.498059 | 8_2:-16012562 | Msa1236810:CDS |
| TTCATCGCATGTCTGTATCC+TGG | 0.504627 | 8_2:+16012544 | None:intergenic |
| AGGACACTATGTTATCTTCT+GGG | 0.504762 | 8_2:-16010939 | Msa1236810:CDS |
| GGATGCTGGGAATGTTCAAA+AGG | 0.507958 | 8_2:-16013666 | Msa1236810:CDS |
| TTTCTAGAACTAACATAGCC+AGG | 0.508065 | 8_2:+16010845 | None:intergenic |
| TTCAAATGTGAATCCTAAAG+AGG | 0.508857 | 8_2:-16012047 | Msa1236810:CDS |
| AGGAGATGCGGTAAAGGTCA+CGG | 0.511505 | 8_2:-16011146 | Msa1236810:CDS |
| CTTCAAGGCATGTGTTCCAT+TGG | 0.511917 | 8_2:-16013558 | Msa1236810:CDS |
| CTCTACTGTCACCTCTTATG+TGG | 0.514303 | 8_2:-16012457 | Msa1236810:CDS |
| GGTTTAACTGATGTGAAGAT+TGG | 0.514334 | 8_2:-16011923 | Msa1236810:intron |
| TCAATCCTATGCATTTCTTG+TGG | 0.525426 | 8_2:+16012230 | None:intergenic |
| AATAAGTAGTTTAAAGAATG+TGG | 0.526772 | 8_2:-16010568 | Msa1236810:intron |
| TCTGAATATGGTGCTTCTGA+GGG | 0.529824 | 8_2:-16012079 | Msa1236810:CDS |
| CTTGTTACTGATATCAAAGA+AGG | 0.530181 | 8_2:-16012340 | Msa1236810:CDS |
| TGAAGGAGTTGTGAAGATGA+AGG | 0.538643 | 8_2:-16013747 | Msa1236810:CDS |
| TCAAACAATTCAGCATTCCA+TGG | 0.540156 | 8_2:+16013310 | None:intergenic |
| AAAATGAAGGTAGAAGATGA+AGG | 0.543631 | 8_2:-16014833 | Msa1236810:CDS |
| TAGGCTAGGAGATGCGGTAA+AGG | 0.545407 | 8_2:-16011152 | Msa1236810:CDS |
| CCGAACAAGTCGGAGTTCAA+GGG | 0.559483 | 8_2:+16010805 | None:intergenic |
| AGAGGCTAACAAAGGATGCT+GGG | 0.561325 | 8_2:-16013679 | Msa1236810:CDS |
| CAATTGGTATGGATTGATAC+CGG | 0.565341 | 8_2:-16012206 | Msa1236810:CDS |
| AAATCTTTGTAAGTGACCAA+TGG | 0.572733 | 8_2:+16013542 | None:intergenic |
| ATCATCTGGACTGACACTAT+CGG | 0.577706 | 8_2:+16012510 | None:intergenic |
| GCAGCTCTGGTACTAGTCAA+GGG | 0.578389 | 8_2:-16013348 | Msa1236810:intron |
| TAAGGTAGAGCTTGAGCCAG+TGG | 0.580352 | 8_2:-16011945 | Msa1236810:CDS |
| TTCACATCAGTTAAACCCAC+TGG | 0.584475 | 8_2:+16011929 | None:intergenic |
| TTGTCACATAGATGTTTCTG+AGG | 0.588025 | 8_2:-16010503 | Msa1236810:three_prime_UTR |
| AAATGAAGGTAGAAGATGAA+GGG | 0.590614 | 8_2:-16014832 | Msa1236810:intron |
| TTGATCCACAAGAAATGCAT+AGG | 0.591375 | 8_2:-16012235 | Msa1236810:CDS |
| CAGAAGATAACATAGTGTCC+TGG | 0.592657 | 8_2:+16010941 | None:intergenic |
| TATTCAATCGGATTTCACCT+TGG | 0.592721 | 8_2:+16010452 | None:intergenic |
| CTAATGCTAAGTATGTTCTA+GGG | 0.593411 | 8_2:-16012174 | Msa1236810:CDS |
| ATCGTCCAAGTTGTTAGTTG+AGG | 0.596707 | 8_2:-16011014 | Msa1236810:CDS |
| AAGGTAGAGCTTGAGCCAGT+GGG | 0.598049 | 8_2:-16011944 | Msa1236810:CDS |
| AAGTGATAGAAGAATTTGAG+AGG | 0.600729 | 8_2:-16013697 | Msa1236810:CDS |
| ACAACATAAGTAGCTAACTC+AGG | 0.606822 | 8_2:+16012022 | None:intergenic |
| TGTTGGATTAGGTGCATCCG+CGG | 0.607062 | 8_2:-16010750 | Msa1236810:CDS |
| TATGTTCTAGGGATCATGAC+AGG | 0.608440 | 8_2:-16012163 | Msa1236810:CDS |
| CAGATATAGGCTAGGAGATG+CGG | 0.610483 | 8_2:-16011158 | Msa1236810:CDS |
| GTTAGTTCTAGAAAAGTCAA+AGG | 0.611504 | 8_2:-16010836 | Msa1236810:CDS |
| TTAGCATTAGGGAAAAGCTC+CGG | 0.616345 | 8_2:+16012187 | None:intergenic |
| AATAATTGAGAAATTTGACA+TGG | 0.619152 | 8_2:-16013723 | Msa1236810:CDS |
| GGCTTATACAGATATAGGCT+AGG | 0.619603 | 8_2:-16011166 | Msa1236810:CDS |
| ATAGGATTGAGCAATTGGTA+TGG | 0.622644 | 8_2:-16012217 | Msa1236810:CDS |
| TAGAAAAGTCAAAGGTATTG+CGG | 0.623191 | 8_2:-16010828 | Msa1236810:CDS |
| GAACTCCGACTTGTTCGGAA+AGG | 0.630222 | 8_2:-16010800 | Msa1236810:CDS |
| CAAATTATCACAAACAAAAG+GGG | 0.631674 | 8_2:-16012608 | Msa1236810:CDS |
| CGGCTCAATTCAAGACACCT+AGG | 0.633848 | 8_2:-16010730 | Msa1236810:CDS |
| ATTTCTGAACACATTTGTTG+TGG | 0.633999 | 8_2:+16012567 | None:intergenic |
| AGAATTTGAGAGGCTAACAA+AGG | 0.640125 | 8_2:-16013687 | Msa1236810:CDS |
| GTTATCTTCTGGGAAATCAG+TGG | 0.640384 | 8_2:-16010929 | Msa1236810:CDS |
| GATTACATGTGCTGATGTGT+CGG | 0.641660 | 8_2:-16013862 | Msa1236810:CDS |
| ATGTTCCTTTCCGAACAAGT+CGG | 0.642426 | 8_2:+16010795 | None:intergenic |
| GTTGAGACACTATGCAGGAG+AGG | 0.647395 | 8_2:-16012116 | Msa1236810:CDS |
| ATTGATTTATCCAAAGAACC+AGG | 0.665402 | 8_2:-16010959 | Msa1236810:CDS |
| AGGTGTCTTGAATTGAGCCG+CGG | 0.680345 | 8_2:+16010733 | None:intergenic |
| ATGTTCTGAAAGCATACACA+AGG | 0.681370 | 8_2:+16012383 | None:intergenic |
| AAATTATCACAAACAAAAGG+GGG | 0.682053 | 8_2:-16012607 | Msa1236810:CDS |
| TTTGTAGGACCAATACACCT+AGG | 0.702315 | 8_2:+16010713 | None:intergenic |
| GGTTTGATATATCTTCACTG+TGG | 0.723029 | 8_2:+16013285 | None:intergenic |
| CCATATTCAGAAGTCAACAG+AGG | 0.745189 | 8_2:+16012091 | None:intergenic |
| GAGATGCGGTAAAGGTCACG+GGG | 0.752976 | 8_2:-16011144 | Msa1236810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTTTCTTGTTTT+GGG | + | chr8_2:16011085-16011104 | None:intergenic | 10.0% |
| !!! | TTCATTTTTTAAATTACTAT+CGG | - | chr8_2:16012188-16012207 | Msa1236810:CDS | 10.0% |
| !!! | TTAGTTTTTCAAATTATTAT+CGG | + | chr8_2:16012458-16012477 | None:intergenic | 10.0% |
| !! | TTATAAAAAACAAATGTTAA+GGG | - | chr8_2:16013802-16013821 | Msa1236810:intron | 10.0% |
| !! | AAATTAACTATTTCACTAAA+CGG | - | chr8_2:16010993-16011012 | Msa1236810:CDS | 15.0% |
| !!! | GTATTTTTTTTTTCTTGTTT+TGG | + | chr8_2:16011086-16011105 | None:intergenic | 15.0% |
| !! | TACAAAAAAAACACAAAAAA+AGG | + | chr8_2:16011121-16011140 | None:intergenic | 15.0% |
| !! | AAAAATAAATTCATATAGCA+TGG | + | chr8_2:16012389-16012408 | None:intergenic | 15.0% |
| !!! | TAGTTTTTCAAATTATTATC+GGG | + | chr8_2:16012457-16012476 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTATAACCATTT+AGG | + | chr8_2:16013796-16013815 | None:intergenic | 15.0% |
| !! | GTTATAAAAAACAAATGTTA+AGG | - | chr8_2:16013801-16013820 | Msa1236810:intron | 15.0% |
| !! | TATAAAAAACAAATGTTAAG+GGG | - | chr8_2:16013803-16013822 | Msa1236810:intron | 15.0% |
| !! | TCTATGAAAAAAATATAAAG+TGG | - | chr8_2:16014809-16014828 | Msa1236810:intron | 15.0% |
| !! | AAGTTATATAAGAGAAAATG+AGG | - | chr8_2:16010651-16010670 | Msa1236810:CDS | 20.0% |
| !! | ATTAGATTAACATGTTTAAC+AGG | - | chr8_2:16010707-16010726 | Msa1236810:CDS | 20.0% |
| !! | TTAGATTAACATGTTTAACA+GGG | - | chr8_2:16010708-16010727 | Msa1236810:CDS | 20.0% |
| !!! | AAGTCTAGCTTTTATAATAA+AGG | - | chr8_2:16010778-16010797 | Msa1236810:CDS | 20.0% |
| !!! | CAAGTCTATAATTTTAATCA+AGG | - | chr8_2:16010962-16010981 | Msa1236810:CDS | 20.0% |
| !!! | TTTTTTGTTTTTTGGTTTCT+GGG | + | chr8_2:16011200-16011219 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTTTTTGGTTTC+TGG | + | chr8_2:16011201-16011220 | None:intergenic | 20.0% |
| !!! | TGAGTTCATTTTTTGTTTTT+TGG | + | chr8_2:16011208-16011227 | None:intergenic | 20.0% |
| !!! | TATTTTATTTCCACTTCATT+AGG | - | chr8_2:16011363-16011382 | Msa1236810:intron | 20.0% |
| !! | ACATTTCTTTATCTAACTAT+AGG | - | chr8_2:16011402-16011421 | Msa1236810:intron | 20.0% |
| !!! | TTTTTTCTTTTCATAAGTGT+AGG | - | chr8_2:16011516-16011535 | Msa1236810:intron | 20.0% |
| !! | AATAATTGAGAAATTTGACA+TGG | - | chr8_2:16011563-16011582 | Msa1236810:intron | 20.0% |
| !! | TCAACTATTCTATTGATATA+AGG | + | chr8_2:16011774-16011793 | None:intergenic | 20.0% |
| !! | TATATCAATAGAATAGTTGA+TGG | - | chr8_2:16011774-16011793 | Msa1236810:intron | 20.0% |
| !! | TTCATTTCTCAAATTATCAT+TGG | + | chr8_2:16012296-16012315 | None:intergenic | 20.0% |
| !!! | AGTTTTTCAAATTATTATCG+GGG | + | chr8_2:16012456-16012475 | None:intergenic | 20.0% |
| !!! | ATTACTGGTTAGTTTATATT+GGG | - | chr8_2:16013684-16013703 | Msa1236810:CDS | 20.0% |
| !! | CTTACAACATAATATAGTAT+TGG | + | chr8_2:16013718-16013737 | None:intergenic | 20.0% |
| !! | CAATACTATATTATGTTGTA+AGG | - | chr8_2:16013716-16013735 | Msa1236810:CDS | 20.0% |
| !! | GTTACATATTTAATGTGATT+AGG | + | chr8_2:16013917-16013936 | None:intergenic | 20.0% |
| !! | TACTAATTGCATGTAAAAAT+GGG | + | chr8_2:16013998-16014017 | None:intergenic | 20.0% |
| !! | ATGTTTGTGATAATTAATCT+TGG | - | chr8_2:16014087-16014106 | Msa1236810:intron | 20.0% |
| !! | AATAAGTAGTTTAAAGAATG+TGG | - | chr8_2:16014718-16014737 | Msa1236810:intron | 20.0% |
| !! | AACGAATAACACACTTTTAA+TGG | + | chr8_2:16010584-16010603 | None:intergenic | 25.0% |
| ! | ATATATGTGATAGTCTTCAT+TGG | + | chr8_2:16010829-16010848 | None:intergenic | 25.0% |
| !!! | TTTTGTACAATTGATTCCAT+TGG | - | chr8_2:16011134-16011153 | Msa1236810:CDS | 25.0% |
| !!! | AATTGATTCCATTGGTTTTT+GGG | - | chr8_2:16011142-16011161 | Msa1236810:CDS | 25.0% |
| !!! | GCTTTATACACATTTTGATT+AGG | - | chr8_2:16011328-16011347 | Msa1236810:intron | 25.0% |
| !!! | ATACACATTTTGATTAGGTA+AGG | - | chr8_2:16011333-16011352 | Msa1236810:intron | 25.0% |
| !! | TTTTACACATTCAAATGAGA+AGG | + | chr8_2:16011879-16011898 | None:intergenic | 25.0% |
| ! | TGTCAAATATAGACATGTAT+TGG | + | chr8_2:16012129-16012148 | None:intergenic | 25.0% |
| ! | AGCAAATTATCACAAACAAA+AGG | - | chr8_2:16012676-16012695 | Msa1236810:intron | 25.0% |
| ! | GCAAATTATCACAAACAAAA+GGG | - | chr8_2:16012677-16012696 | Msa1236810:intron | 25.0% |
| ! | CAAATTATCACAAACAAAAG+GGG | - | chr8_2:16012678-16012697 | Msa1236810:intron | 25.0% |
| ! | AAATTATCACAAACAAAAGG+GGG | - | chr8_2:16012679-16012698 | Msa1236810:intron | 25.0% |
| !! | TTTTGACATAGCAATTCTAA+TGG | + | chr8_2:16013001-16013020 | None:intergenic | 25.0% |
| ! | AATTCAAAGTAAGCAATTTG+AGG | + | chr8_2:16013294-16013313 | None:intergenic | 25.0% |
| !!! | CAATTTAGTCCTTGTTATTA+AGG | - | chr8_2:16013564-16013583 | Msa1236810:CDS | 25.0% |
| ! | AGTAAAGAATGAATGATTAC+TGG | - | chr8_2:16013669-16013688 | Msa1236810:CDS | 25.0% |
| !!! | GATTACTGGTTAGTTTATAT+TGG | - | chr8_2:16013683-16013702 | Msa1236810:CDS | 25.0% |
| ! | TACTATATTATGTTGTAAGG+TGG | - | chr8_2:16013719-16013738 | Msa1236810:CDS | 25.0% |
| ! | GTACTAATTGCATGTAAAAA+TGG | + | chr8_2:16013999-16014018 | None:intergenic | 25.0% |
| ! | AAAAATATCACCAGGTAAAA+TGG | + | chr8_2:16014045-16014064 | None:intergenic | 25.0% |
| ! | AAATCTGTAAAAATATCACC+AGG | + | chr8_2:16014053-16014072 | None:intergenic | 25.0% |
| !! | ATTAATCTTGGATAATTTGC+AGG | - | chr8_2:16014099-16014118 | Msa1236810:intron | 25.0% |
| AAAATGAAGGTAGAAGATGA+AGG | - | chr8_2:16010453-16010472 | Msa1236810:three_prime_UTR | 30.0% | |
| AAATGAAGGTAGAAGATGAA+GGG | - | chr8_2:16010454-16010473 | Msa1236810:three_prime_UTR | 30.0% | |
| TTTAACAGGGAAAAATGCTA+GGG | - | chr8_2:16010721-16010740 | Msa1236810:CDS | 30.0% | |
| !!! | CAATTGATTCCATTGGTTTT+TGG | - | chr8_2:16011141-16011160 | Msa1236810:CDS | 30.0% |
| ! | CTGGGTTTTCAATACTATAT+AGG | + | chr8_2:16011182-16011201 | None:intergenic | 30.0% |
| ! | CAACAAAAGTATGTACTGTT+TGG | + | chr8_2:16011255-16011274 | None:intergenic | 30.0% |
| !! | ATCTTGACTTCATTAGTCTT+TGG | - | chr8_2:16011306-16011325 | Msa1236810:intron | 30.0% |
| !!! | AGTGAGTTTTTTCTGTTTGA+AGG | + | chr8_2:16011466-16011485 | None:intergenic | 30.0% |
| AAGTGATAGAAGAATTTGAG+AGG | - | chr8_2:16011589-16011608 | Msa1236810:intron | 30.0% | |
| AAATCTTTGTAAGTGACCAA+TGG | + | chr8_2:16011747-16011766 | None:intergenic | 30.0% | |
| ATTGGTCACTTACAAAGATT+TGG | - | chr8_2:16011746-16011765 | Msa1236810:intron | 30.0% | |
| CTTAAGGAAATATCAGTGAT+TGG | + | chr8_2:16011828-16011847 | None:intergenic | 30.0% | |
| CAATCACTGATATTTCCTTA+AGG | - | chr8_2:16011826-16011845 | Msa1236810:intron | 30.0% | |
| GTGTAAAAGTTAGAAGTTTC+TGG | - | chr8_2:16011891-16011910 | Msa1236810:intron | 30.0% | |
| GGAAGCAAAAATATATACCA+TGG | - | chr8_2:16011959-16011978 | Msa1236810:CDS | 30.0% | |
| ! | ATCAAACCTCTTTTGTCTTT+AGG | - | chr8_2:16012016-16012035 | Msa1236810:CDS | 30.0% |
| ACTTCAATTATGTGCTACAT+AGG | + | chr8_2:16012094-16012113 | None:intergenic | 30.0% | |
| CTTCAGATTAAAGATGTGTT+TGG | + | chr8_2:16012363-16012382 | None:intergenic | 30.0% | |
| ATAGGAAACTCTCTACATAA+TGG | + | chr8_2:16012622-16012641 | None:intergenic | 30.0% | |
| AGAGAGTTTCCTATCAAAAA+TGG | - | chr8_2:16012628-16012647 | Msa1236810:intron | 30.0% | |
| ! | ATTTCTGAACACATTTGTTG+TGG | + | chr8_2:16012722-16012741 | None:intergenic | 30.0% |
| TCAGAACATTTGAACAAGTT+TGG | - | chr8_2:16012917-16012936 | Msa1236810:intron | 30.0% | |
| CAGAACATTTGAACAAGTTT+GGG | - | chr8_2:16012918-16012937 | Msa1236810:intron | 30.0% | |
| CTTGTTACTGATATCAAAGA+AGG | - | chr8_2:16012946-16012965 | Msa1236810:intron | 30.0% | |
| CTAGAACATACTTAGCATTA+GGG | + | chr8_2:16013113-16013132 | None:intergenic | 30.0% | |
| CTAATGCTAAGTATGTTCTA+GGG | - | chr8_2:16013112-16013131 | Msa1236810:intron | 30.0% | |
| TTCAAATGTGAATCCTAAAG+AGG | - | chr8_2:16013239-16013258 | Msa1236810:intron | 30.0% | |
| ATTCCTTTGAATCAACTTGA+TGG | - | chr8_2:16013315-16013334 | Msa1236810:CDS | 30.0% | |
| AAAAAATTTACAGTACCTGC+AGG | + | chr8_2:16013417-16013436 | None:intergenic | 30.0% | |
| TGAAGAGACTAATACTCTAA+AGG | + | chr8_2:16013487-16013506 | None:intergenic | 30.0% | |
| !! | TCCTTGTTATTAAGGTGTTA+TGG | - | chr8_2:16013572-16013591 | Msa1236810:CDS | 30.0% |
| TCCATAACACCTTAATAACA+AGG | + | chr8_2:16013576-16013595 | None:intergenic | 30.0% | |
| ATAATTGTGGAGGATTTGAT+TGG | - | chr8_2:16013742-16013761 | Msa1236810:CDS | 30.0% | |
| CGTATCATCAAGCATATAAA+AGG | + | chr8_2:16013837-16013856 | None:intergenic | 30.0% | |
| GGATACAAATCACCTAAATT+TGG | + | chr8_2:16013872-16013891 | None:intergenic | 30.0% | |
| AGTACTATGTTCCTTATGTA+GGG | + | chr8_2:16013893-16013912 | None:intergenic | 30.0% | |
| TAGTACTATGTTCCTTATGT+AGG | + | chr8_2:16013894-16013913 | None:intergenic | 30.0% | |
| TTACATGCAATTAGTACTAG+TGG | - | chr8_2:16014002-16014021 | Msa1236810:intron | 30.0% | |
| ! | TATGCTTATTCCATTTTACC+TGG | - | chr8_2:16014032-16014051 | Msa1236810:intron | 30.0% |
| ! | ATTGATTTATCCAAAGAACC+AGG | - | chr8_2:16014327-16014346 | Msa1236810:intron | 30.0% |
| !! | GTTAGTTCTAGAAAAGTCAA+AGG | - | chr8_2:16014450-16014469 | Msa1236810:intron | 30.0% |
| !! | TAGAAAAGTCAAAGGTATTG+CGG | - | chr8_2:16014458-16014477 | Msa1236810:intron | 30.0% |
| AAGATTCTTGAGCATTATGT+TGG | - | chr8_2:16014519-16014538 | Msa1236810:intron | 30.0% | |
| CAACAATATTTGCAACACTT+TGG | + | chr8_2:16014601-16014620 | None:intergenic | 30.0% | |
| !! | CAAAGTGTTGCAAATATTGT+TGG | - | chr8_2:16014599-16014618 | Msa1236810:intron | 30.0% |
| AAAAATATAAAGTGGCACCA+AGG | - | chr8_2:16014817-16014836 | Msa1236810:intron | 30.0% | |
| !! | TTGGTGTGTGTTTTTGAAGA+AGG | - | chr8_2:16010477-16010496 | Msa1236810:three_prime_UTR | 35.0% |
| !! | TTTTGAAGAAGGAGAAGAGA+AGG | - | chr8_2:16010488-16010507 | Msa1236810:three_prime_UTR | 35.0% |
| TTTGAAGAAGGAGAAGAGAA+GGG | - | chr8_2:16010489-16010508 | Msa1236810:three_prime_UTR | 35.0% | |
| !! | AAGTGGGTTGTTAATCGAAT+TGG | - | chr8_2:16010537-16010556 | Msa1236810:three_prime_UTR | 35.0% |
| TGAGAATAGAGATCGAATCA+AGG | - | chr8_2:16010678-16010697 | Msa1236810:CDS | 35.0% | |
| GAGAATAGAGATCGAATCAA+GGG | - | chr8_2:16010679-16010698 | Msa1236810:CDS | 35.0% | |
| AGAATAGAGATCGAATCAAG+GGG | - | chr8_2:16010680-16010699 | Msa1236810:CDS | 35.0% | |
| GTTTAACAGGGAAAAATGCT+AGG | - | chr8_2:16010720-16010739 | Msa1236810:CDS | 35.0% | |
| !!! | TTGTTTTGGGTTGTGAATGT+TGG | + | chr8_2:16011072-16011091 | None:intergenic | 35.0% |
| TAGAATGACCCAAAAACCAA+TGG | + | chr8_2:16011153-16011172 | None:intergenic | 35.0% | |
| ATTTCCACTTCATTAGGCTT+TGG | - | chr8_2:16011369-16011388 | Msa1236810:intron | 35.0% | |
| GTTTGAAGGACATACAGATA+TGG | + | chr8_2:16011452-16011471 | None:intergenic | 35.0% | |
| ! | CTTTTCATAAGTGTAGGTGA+AGG | - | chr8_2:16011522-16011541 | Msa1236810:intron | 35.0% |
| AGAATTTGAGAGGCTAACAA+AGG | - | chr8_2:16011599-16011618 | Msa1236810:intron | 35.0% | |
| ! | GGAAACACTGAAGAAGATTT+TGG | - | chr8_2:16011641-16011660 | Msa1236810:intron | 35.0% |
| ! | GATTTTTCTCCTATTCTCAC+TGG | - | chr8_2:16011798-16011817 | Msa1236810:intron | 35.0% |
| !!! | ATTGGTTTTCCAGTGAGAAT+AGG | + | chr8_2:16011810-16011829 | None:intergenic | 35.0% |
| TGTCTCATAGTCATACCTTA+AGG | + | chr8_2:16011844-16011863 | None:intergenic | 35.0% | |
| TCAAACAATTCAGCATTCCA+TGG | + | chr8_2:16011979-16011998 | None:intergenic | 35.0% | |
| GGTTTGATATATCTTCACTG+TGG | + | chr8_2:16012004-16012023 | None:intergenic | 35.0% | |
| CTTGTTCCTAAAGACAAAAG+AGG | + | chr8_2:16012025-16012044 | None:intergenic | 35.0% | |
| TGATACGATGTTGACATATG+TGG | - | chr8_2:16012150-16012169 | Msa1236810:CDS | 35.0% | |
| TATTTCCTGCCTATGAAGTA+CGG | - | chr8_2:16012248-16012267 | Msa1236810:CDS | 35.0% | |
| CGACGTATCAGTATCATATT+CGG | + | chr8_2:16012432-16012451 | None:intergenic | 35.0% | |
| CAGACATTTCTTCAATGTGT+CGG | - | chr8_2:16012544-16012563 | Msa1236810:CDS | 35.0% | |
| TTTCTGCTAGTTAGCTAGAA+TGG | - | chr8_2:16012578-16012597 | Msa1236810:CDS | 35.0% | |
| GTTTCCTATCAAAAATGGCA+AGG | - | chr8_2:16012633-16012652 | Msa1236810:intron | 35.0% | |
| ACAAATGTGTTCAGAAATCC+AGG | - | chr8_2:16012724-16012743 | Msa1236810:intron | 35.0% | |
| GGACTGAATATTACATCATC+TGG | + | chr8_2:16012793-16012812 | None:intergenic | 35.0% | |
| TAGAGTGATTGGTGAAAATC+TGG | + | chr8_2:16012814-16012833 | None:intergenic | 35.0% | |
| TGAAAAGTAGTCCACATAAG+AGG | + | chr8_2:16012843-16012862 | None:intergenic | 35.0% | |
| !! | ATGTTCTGAAAGCATACACA+AGG | + | chr8_2:16012906-16012925 | None:intergenic | 35.0% |
| GACATAGCAATTCTAATGGA+TGG | + | chr8_2:16012997-16013016 | None:intergenic | 35.0% | |
| AAGTTAGCTAGTTCAGGATT+TGG | + | chr8_2:16013033-16013052 | None:intergenic | 35.0% | |
| TTGATCCACAAGAAATGCAT+AGG | - | chr8_2:16013051-16013070 | Msa1236810:intron | 35.0% | |
| TCAATCCTATGCATTTCTTG+TGG | + | chr8_2:16013059-16013078 | None:intergenic | 35.0% | |
| AATGCATAGGATTGAGCAAT+TGG | - | chr8_2:16013064-16013083 | Msa1236810:intron | 35.0% | |
| ATAGGATTGAGCAATTGGTA+TGG | - | chr8_2:16013069-16013088 | Msa1236810:intron | 35.0% | |
| ! | CAATTGGTATGGATTGATAC+CGG | - | chr8_2:16013080-16013099 | Msa1236810:intron | 35.0% |
| CCTAGAACATACTTAGCATT+AGG | + | chr8_2:16013114-16013133 | None:intergenic | 35.0% | |
| CCTAATGCTAAGTATGTTCT+AGG | - | chr8_2:16013111-16013130 | Msa1236810:intron | 35.0% | |
| AAAAAGTTGAGACACTATGC+AGG | - | chr8_2:16013165-16013184 | Msa1236810:intron | 35.0% | |
| ACAACATAAGTAGCTAACTC+AGG | + | chr8_2:16013267-16013286 | None:intergenic | 35.0% | |
| !! | GTTCCATCAAGTTGATTCAA+AGG | + | chr8_2:16013321-16013340 | None:intergenic | 35.0% |
| GAATCAACTTGATGGAACTA+AGG | - | chr8_2:16013323-16013342 | Msa1236810:CDS | 35.0% | |
| GGTTTAACTGATGTGAAGAT+TGG | - | chr8_2:16013363-16013382 | Msa1236810:intron | 35.0% | |
| ! | TACTCTAAAGGCTGAATTGA+AGG | + | chr8_2:16013475-16013494 | None:intergenic | 35.0% |
| TGTTGTAAGGTGGATAATTG+TGG | - | chr8_2:16013729-16013748 | Msa1236810:CDS | 35.0% | |
| ! | GACAAAGCTTTTAGCCTAAA+TGG | - | chr8_2:16013779-16013798 | Msa1236810:intron | 35.0% |
| ! | GTGATTTGTATCCCTACATA+AGG | - | chr8_2:16013879-16013898 | Msa1236810:intron | 35.0% |
| TTGCAGGCTTATACAGATAT+AGG | - | chr8_2:16014115-16014134 | Msa1236810:intron | 35.0% | |
| ! | CAATGTTGATTGTGAGCATA+AGG | + | chr8_2:16014212-16014231 | None:intergenic | 35.0% |
| TTTCTCCTCAACTAACAACT+TGG | + | chr8_2:16014280-16014299 | None:intergenic | 35.0% | |
| GTTGTTAGTTGAGGAGAAAA+TGG | - | chr8_2:16014281-16014300 | Msa1236810:intron | 35.0% | |
| AGGACACTATGTTATCTTCT+GGG | - | chr8_2:16014347-16014366 | Msa1236810:intron | 35.0% | |
| TGATGAATGTTGCACATGTT+TGG | - | chr8_2:16014401-16014420 | Msa1236810:intron | 35.0% | |
| ! | GACAAGTCTTTTATTGATCC+TGG | - | chr8_2:16014423-16014442 | Msa1236810:intron | 35.0% |
| !! | TTTCTAGAACTAACATAGCC+AGG | + | chr8_2:16014444-16014463 | None:intergenic | 35.0% |
| CATAATGCTCAAGAATCTTC+TGG | + | chr8_2:16014518-16014537 | None:intergenic | 35.0% | |
| CTTGAGCATTATGTTGGATT+AGG | - | chr8_2:16014525-16014544 | Msa1236810:intron | 35.0% | |
| AAGCAGAACTAAAATAGCTC+TGG | + | chr8_2:16014635-16014654 | None:intergenic | 35.0% | |
| ! | TTGTCACATAGATGTTTCTG+AGG | - | chr8_2:16014783-16014802 | Msa1236810:intron | 35.0% |
| TATTCAATCGGATTTCACCT+TGG | + | chr8_2:16014837-16014856 | None:intergenic | 35.0% | |
| AGGGAAAAATGCTAGGGATT+AGG | - | chr8_2:16010727-16010746 | Msa1236810:CDS | 40.0% | |
| GGGAAAAATGCTAGGGATTA+GGG | - | chr8_2:16010728-16010747 | Msa1236810:CDS | 40.0% | |
| CTAGGGATTAGGGCAAATTA+GGG | - | chr8_2:16010738-16010757 | Msa1236810:CDS | 40.0% | |
| AAAGCCAAAGCCTAATGAAG+TGG | + | chr8_2:16011376-16011395 | None:intergenic | 40.0% | |
| ! | GATTACATGTGCTGATGTGT+CGG | - | chr8_2:16011424-16011443 | Msa1236810:intron | 40.0% |
| TGAAGGAGTTGTGAAGATGA+AGG | - | chr8_2:16011539-16011558 | Msa1236810:intron | 40.0% | |
| GCTGAATACTTGCAGAGTTT+AGG | - | chr8_2:16011678-16011697 | Msa1236810:intron | 40.0% | |
| ! | TTGCAGAGTTTAGGACTCAA+TGG | - | chr8_2:16011687-16011706 | Msa1236810:intron | 40.0% |
| AACTGATCCTGAAAGCTTCA+AGG | - | chr8_2:16011713-16011732 | Msa1236810:intron | 40.0% | |
| TACTATCGGTGTATACATGC+CGG | - | chr8_2:16012202-16012221 | Msa1236810:CDS | 40.0% | |
| TTGTCTGACACCAATACACA+TGG | - | chr8_2:16012516-16012535 | Msa1236810:CDS | 40.0% | |
| TGTCTGACACCAATACACAT+GGG | - | chr8_2:16012517-16012536 | Msa1236810:CDS | 40.0% | |
| ! | GTCTGTTTTCCCATGTGTAT+TGG | + | chr8_2:16012529-16012548 | None:intergenic | 40.0% |
| !!! | AAGGCCTTGCCATTTTTGAT+AGG | + | chr8_2:16012640-16012659 | None:intergenic | 40.0% |
| ATCATCTGGACTGACACTAT+CGG | + | chr8_2:16012779-16012798 | None:intergenic | 40.0% | |
| TGGATCAAGTTAGCTAGTTC+AGG | + | chr8_2:16013039-16013058 | None:intergenic | 40.0% | |
| TTAGCATTAGGGAAAAGCTC+CGG | + | chr8_2:16013102-16013121 | None:intergenic | 40.0% | |
| !! | TATGTTCTAGGGATCATGAC+AGG | - | chr8_2:16013123-16013142 | Msa1236810:intron | 40.0% |
| CCATATTCAGAAGTCAACAG+AGG | + | chr8_2:16013198-16013217 | None:intergenic | 40.0% | |
| !! | CCTCTGTTGACTTCTGAATA+TGG | - | chr8_2:16013195-16013214 | Msa1236810:intron | 40.0% |
| TTCTGAATATGGTGCTTCTG+AGG | - | chr8_2:16013206-16013225 | Msa1236810:intron | 40.0% | |
| TCTGAATATGGTGCTTCTGA+GGG | - | chr8_2:16013207-16013226 | Msa1236810:intron | 40.0% | |
| TTCACATCAGTTAAACCCAC+TGG | + | chr8_2:16013360-16013379 | None:intergenic | 40.0% | |
| ATTTACAGTACCTGCAGGAT+TGG | + | chr8_2:16013412-16013431 | None:intergenic | 40.0% | |
| TGTAAGGTGGATAATTGTGG+AGG | - | chr8_2:16013732-16013751 | Msa1236810:CDS | 40.0% | |
| ! | CTTGATGATACGACCAACAT+GGG | - | chr8_2:16013845-16013864 | Msa1236810:intron | 40.0% |
| ACCAACATGGGACCAAATTT+AGG | - | chr8_2:16013857-16013876 | Msa1236810:CDS | 40.0% | |
| ACCTAAATTTGGTCCCATGT+TGG | + | chr8_2:16013861-16013880 | None:intergenic | 40.0% | |
| ACTGACATGGTGTGATTTGA+AGG | + | chr8_2:16013967-16013986 | None:intergenic | 40.0% | |
| GGCTTATACAGATATAGGCT+AGG | - | chr8_2:16014120-16014139 | Msa1236810:intron | 40.0% | |
| CTGCAAAGAAACTTGATCTC+TGG | + | chr8_2:16014183-16014202 | None:intergenic | 40.0% | |
| ATCGTCCAAGTTGTTAGTTG+AGG | - | chr8_2:16014272-16014291 | Msa1236810:intron | 40.0% | |
| ! | AACATAGTGTCCTGGTTCTT+TGG | + | chr8_2:16014340-16014359 | None:intergenic | 40.0% |
| CAGAAGATAACATAGTGTCC+TGG | + | chr8_2:16014348-16014367 | None:intergenic | 40.0% | |
| CAGGACACTATGTTATCTTC+TGG | - | chr8_2:16014346-16014365 | Msa1236810:intron | 40.0% | |
| ! | GTTATCTTCTGGGAAATCAG+TGG | - | chr8_2:16014357-16014376 | Msa1236810:intron | 40.0% |
| ATGTTCCTTTCCGAACAAGT+CGG | + | chr8_2:16014494-16014513 | None:intergenic | 40.0% | |
| TTCAAGACACCTAGGTGTAT+TGG | - | chr8_2:16014564-16014583 | Msa1236810:intron | 40.0% | |
| TTTGTAGGACCAATACACCT+AGG | + | chr8_2:16014576-16014595 | None:intergenic | 40.0% | |
| !! | TGCAACACTTTGGTGTTTGT+AGG | + | chr8_2:16014591-16014610 | None:intergenic | 40.0% |
| GAAGGTAGAAGATGAAGGGT+TGG | - | chr8_2:16010458-16010477 | Msa1236810:three_prime_UTR | 45.0% | |
| TTACGCGTGAGAGAGAAAGT+GGG | - | chr8_2:16010521-16010540 | Msa1236810:three_prime_UTR | 45.0% | |
| GCTAGGGATTAGGGCAAATT+AGG | - | chr8_2:16010737-16010756 | Msa1236810:CDS | 45.0% | |
| AGAGGCTAACAAAGGATGCT+GGG | - | chr8_2:16011607-16011626 | Msa1236810:intron | 45.0% | |
| GGATGCTGGGAATGTTCAAA+AGG | - | chr8_2:16011620-16011639 | Msa1236810:intron | 45.0% | |
| ACACATGCCTTGAAGCTTTC+AGG | + | chr8_2:16011723-16011742 | None:intergenic | 45.0% | |
| CTTCAAGGCATGTGTTCCAT+TGG | - | chr8_2:16011728-16011747 | Msa1236810:intron | 45.0% | |
| !! | GTGTTGTGTTTTTGCAGCTC+TGG | - | chr8_2:16011925-16011944 | Msa1236810:CDS | 45.0% |
| ATACATGCCGGCGTCTATTT+AGG | - | chr8_2:16012214-16012233 | Msa1236810:CDS | 45.0% | |
| CTGCCTATGAAGTACGGATA+CGG | - | chr8_2:16012254-16012273 | Msa1236810:CDS | 45.0% | |
| CAAGTATGCAACGTCGTTGT+TGG | - | chr8_2:16012334-16012353 | Msa1236810:CDS | 45.0% | |
| GCTGCTGTAGATGAAGCTTA+AGG | + | chr8_2:16012659-16012678 | None:intergenic | 45.0% | |
| TTCATCGCATGTCTGTATCC+TGG | + | chr8_2:16012745-16012764 | None:intergenic | 45.0% | |
| AGAGGTGACAGTAGAGTGAT+TGG | + | chr8_2:16012825-16012844 | None:intergenic | 45.0% | |
| CTCTACTGTCACCTCTTATG+TGG | - | chr8_2:16012829-16012848 | Msa1236810:intron | 45.0% | |
| AGGGATCATGACAGGTTCAA+TGG | - | chr8_2:16013131-16013150 | Msa1236810:intron | 45.0% | |
| ! | AATATGGTGCTTCTGAGGGT+TGG | - | chr8_2:16013211-16013230 | Msa1236810:intron | 45.0% |
| ATTGTTCTCACCAATCCTGC+AGG | - | chr8_2:16013399-16013418 | Msa1236810:intron | 45.0% | |
| ! | GCTTGATGATACGACCAACA+TGG | - | chr8_2:16013844-16013863 | Msa1236810:intron | 45.0% |
| ATGGGATAGTGACACTGACA+TGG | + | chr8_2:16013980-16013999 | None:intergenic | 45.0% | |
| CAGATATAGGCTAGGAGATG+CGG | - | chr8_2:16014128-16014147 | Msa1236810:intron | 45.0% | |
| !! | TGATCTCTGGAGCTGAGTTA+TGG | + | chr8_2:16014170-16014189 | None:intergenic | 45.0% |
| GTTACGCGTGAGAGAGAAAG+TGG | - | chr8_2:16010520-16010539 | Msa1236810:three_prime_UTR | 50.0% | |
| GAGAGGCTAACAAAGGATGC+TGG | - | chr8_2:16011606-16011625 | Msa1236810:intron | 50.0% | |
| ! | TGCAGCTCTGGTACTAGTCA+AGG | - | chr8_2:16011937-16011956 | Msa1236810:CDS | 50.0% |
| ! | GCAGCTCTGGTACTAGTCAA+GGG | - | chr8_2:16011938-16011957 | Msa1236810:CDS | 50.0% |
| ! | CGAAGCACCTAAATAGACGC+CGG | + | chr8_2:16012224-16012243 | None:intergenic | 50.0% |
| CGTATCCGTACTTCATAGGC+AGG | + | chr8_2:16012256-16012275 | None:intergenic | 50.0% | |
| GTGCCGTATCCGTACTTCAT+AGG | + | chr8_2:16012260-16012279 | None:intergenic | 50.0% | |
| GTTGAGACACTATGCAGGAG+AGG | - | chr8_2:16013170-16013189 | Msa1236810:intron | 50.0% | |
| GCTAACTCAGGAGCCTCTTT+AGG | + | chr8_2:16013255-16013274 | None:intergenic | 50.0% | |
| TAAGGTAGAGCTTGAGCCAG+TGG | - | chr8_2:16013341-16013360 | Msa1236810:CDS | 50.0% | |
| AAGGTAGAGCTTGAGCCAGT+GGG | - | chr8_2:16013342-16013361 | Msa1236810:CDS | 50.0% | |
| TAGGCTAGGAGATGCGGTAA+AGG | - | chr8_2:16014134-16014153 | Msa1236810:intron | 50.0% | |
| AGGAGATGCGGTAAAGGTCA+CGG | - | chr8_2:16014140-16014159 | Msa1236810:intron | 50.0% | |
| CCGAACAAGTCGGAGTTCAA+GGG | + | chr8_2:16014484-16014503 | None:intergenic | 50.0% | |
| ! | CCCTTGAACTCCGACTTGTT+CGG | - | chr8_2:16014481-16014500 | Msa1236810:intron | 50.0% |
| TCCGAACAAGTCGGAGTTCA+AGG | + | chr8_2:16014485-16014504 | None:intergenic | 50.0% | |
| ! | GAACTCCGACTTGTTCGGAA+AGG | - | chr8_2:16014486-16014505 | Msa1236810:intron | 50.0% |
| ! | TGTTGGATTAGGTGCATCCG+CGG | - | chr8_2:16014536-16014555 | Msa1236810:intron | 50.0% |
| AGGTGTCTTGAATTGAGCCG+CGG | + | chr8_2:16014556-16014575 | None:intergenic | 50.0% | |
| CGGCTCAATTCAAGACACCT+AGG | - | chr8_2:16014556-16014575 | Msa1236810:intron | 50.0% | |
| ! | ACAAAAGGGGGTGTGACAGC+AGG | - | chr8_2:16012691-16012710 | Msa1236810:intron | 55.0% |
| GGAGATGCGGTAAAGGTCAC+GGG | - | chr8_2:16014141-16014160 | Msa1236810:intron | 55.0% | |
| GAGATGCGGTAAAGGTCACG+GGG | - | chr8_2:16014142-16014161 | Msa1236810:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 16010447 | 16014861 | 16010447 | ID=Msa1236810;Name=Msa1236810 |
| chr8_2 | mRNA | 16010447 | 16014861 | 16010447 | ID=Msa1236810-mRNA-1;Parent=Msa1236810;Name=Msa1236810-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.33|0.42|0.85|0.5|0.28|7|179|576 |
| chr8_2 | exon | 16010447 | 16010585 | 16010447 | ID=Msa1236810-mRNA-1:exon:6011;Parent=Msa1236810-mRNA-1 |
| chr8_2 | exon | 16010606 | 16011187 | 16010606 | ID=Msa1236810-mRNA-1:exon:6010;Parent=Msa1236810-mRNA-1 |
| chr8_2 | exon | 16011924 | 16012633 | 16011924 | ID=Msa1236810-mRNA-1:exon:6009;Parent=Msa1236810-mRNA-1 |
| chr8_2 | exon | 16013265 | 16013366 | 16013265 | ID=Msa1236810-mRNA-1:exon:6008;Parent=Msa1236810-mRNA-1 |
| chr8_2 | exon | 16013461 | 16013775 | 16013461 | ID=Msa1236810-mRNA-1:exon:6007;Parent=Msa1236810-mRNA-1 |
| chr8_2 | exon | 16013852 | 16013884 | 16013852 | ID=Msa1236810-mRNA-1:exon:6006;Parent=Msa1236810-mRNA-1 |
| chr8_2 | exon | 16014833 | 16014861 | 16014833 | ID=Msa1236810-mRNA-1:exon:6005;Parent=Msa1236810-mRNA-1 |
| chr8_2 | CDS | 16014833 | 16014861 | 16014833 | ID=Msa1236810-mRNA-1:cds;Parent=Msa1236810-mRNA-1 |
| chr8_2 | CDS | 16013852 | 16013884 | 16013852 | ID=Msa1236810-mRNA-1:cds;Parent=Msa1236810-mRNA-1 |
| chr8_2 | CDS | 16013461 | 16013775 | 16013461 | ID=Msa1236810-mRNA-1:cds;Parent=Msa1236810-mRNA-1 |
| chr8_2 | CDS | 16013265 | 16013366 | 16013265 | ID=Msa1236810-mRNA-1:cds;Parent=Msa1236810-mRNA-1 |
| chr8_2 | CDS | 16011924 | 16012633 | 16011924 | ID=Msa1236810-mRNA-1:cds;Parent=Msa1236810-mRNA-1 |
| chr8_2 | CDS | 16010646 | 16011187 | 16010646 | ID=Msa1236810-mRNA-1:cds;Parent=Msa1236810-mRNA-1 |
| chr8_2 | three_prime_UTR | 16010606 | 16010645 | 16010606 | ID=Msa1236810-mRNA-1:three_prime_utr;Parent=Msa1236810-mRNA-1 |
| chr8_2 | three_prime_UTR | 16010447 | 16010585 | 16010447 | ID=Msa1236810-mRNA-1:three_prime_utr;Parent=Msa1236810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
