AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0760130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760130 MtrunA17_Chr8g0353391 69.388 49 4 1 53 101 36 73 1.34e-16 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 52 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTAGTGTAGTTGATTT+TGG 0.172373 5_2:+16378407 Msa0760130:three_prime_UTR
TTTAGTCCAATTTGGAATTA+AGG 0.207914 5_2:+16376432 Msa0760130:CDS
TTGGGTTGTTTAGTCCAATT+TGG 0.231297 5_2:+16376424 Msa0760130:CDS
TCCATACCTTAATTCCAAAT+TGG 0.238904 5_2:-16376438 None:intergenic
TCCTTGGTCTTCAAGTGTTT+TGG 0.241519 5_2:+16378306 Msa0760130:three_prime_UTR
GTTGGCGTAGATTATTTATA+TGG 0.245212 5_2:+16379902 Msa0760130:three_prime_UTR
TCTCTTGGTTCTTATTTCCT+TGG 0.283416 5_2:+16378459 Msa0760130:three_prime_UTR
ATGATTTAGGTTTATTTCAT+TGG 0.286261 5_2:+16377440 Msa0760130:intron
CAGAGTAGGTTGTTGTAGTT+TGG 0.295852 5_2:+16378384 Msa0760130:three_prime_UTR
CTCTTGGTTCTTATTTCCTT+GGG 0.302979 5_2:+16378460 Msa0760130:three_prime_UTR
CAACATGCCTTCAAAATTAT+AGG 0.309565 5_2:+16379618 Msa0760130:three_prime_UTR
TTGAAGGAGCTTGAGCTTGC+TGG 0.325512 5_2:+16377476 Msa0760130:CDS
ATGATCATTGAAGAACTTCT+TGG 0.335378 5_2:+16378657 Msa0760130:three_prime_UTR
TTATGTAGTCTCAAAACTAT+AGG 0.341547 5_2:+16378549 Msa0760130:three_prime_UTR
GATGGTTTCTTATGTTCTCT+TGG 0.351285 5_2:+16378444 Msa0760130:three_prime_UTR
GTAATGCAGCAGCGGTGTTT+TGG 0.370709 5_2:+16378187 Msa0760130:CDS
TCAACCTGGATTATGCAATA+AGG 0.379121 5_2:+16379643 Msa0760130:three_prime_UTR
AAATAAGTTATGAACCTTAG+TGG 0.390097 5_2:+16378584 Msa0760130:three_prime_UTR
TGATCATTGAAGAACTTCTT+GGG 0.400772 5_2:+16378658 Msa0760130:three_prime_UTR
GTCAACTTTAGTTCTGCATA+AGG 0.411531 5_2:-16376400 None:intergenic
TGTATTTGTGAGTATAAGTT+TGG 0.416797 5_2:+16378697 Msa0760130:three_prime_UTR
AACTATTCAGAGTTGGTTCA+AGG 0.418221 5_2:+16378085 Msa0760130:CDS
ATGTCATATGTTGGTGGAAG+TGG 0.444746 5_2:+16379709 Msa0760130:three_prime_UTR
GCAGAACTAAAGTTGACATT+GGG 0.464941 5_2:+16376406 Msa0760130:CDS
GATTCCTTATTGCATAATCC+AGG 0.477168 5_2:-16379647 None:intergenic
TGGATTATGCAATAAGGAAT+CGG 0.486426 5_2:+16379649 Msa0760130:three_prime_UTR
AGACAAATCAGAAGGTATAG+AGG 0.495790 5_2:-16378240 None:intergenic
TGCAGAACTAAAGTTGACAT+TGG 0.497907 5_2:+16376405 Msa0760130:CDS
TGGAGAAGATGCCATCTTGA+AGG 0.505999 5_2:+16377460 Msa0760130:CDS
CATAATTTCGAGCGAAGTCG+AGG 0.526325 5_2:+16378118 Msa0760130:CDS
GCTGGATATCAATATGTTGG+TGG 0.528781 5_2:+16377494 Msa0760130:CDS
AAGGCTTCATAAGCAATAGT+TGG 0.530783 5_2:+16379870 Msa0760130:three_prime_UTR
TAAAACCGACATGTTGCAGC+TGG 0.532167 5_2:-16378270 None:intergenic
ACAAGGATGAGGCAAACAAA+AGG 0.543897 5_2:+16379851 Msa0760130:intron
CAAAATTATAGGTATCAACC+TGG 0.553399 5_2:+16379629 Msa0760130:three_prime_UTR
TGTGCTTAACTATTCAGAGT+TGG 0.553654 5_2:+16378078 Msa0760130:CDS
AAGCTCAAGCTCCTTCAAGA+TGG 0.578183 5_2:-16377471 None:intergenic
AATAGTTGGTGCTAATCTGT+TGG 0.586146 5_2:+16379884 Msa0760130:three_prime_UTR
GTGCAGTTTATGTCATATGT+TGG 0.589526 5_2:+16379700 Msa0760130:three_prime_UTR
TCACAACAACTAATCCACTA+AGG 0.593194 5_2:-16378598 None:intergenic
GATCATTGAAGAACTTCTTG+GGG 0.595703 5_2:+16378659 Msa0760130:three_prime_UTR
GTGTTCCAGCTGCAACATGT+CGG 0.603236 5_2:+16378265 Msa0760130:three_prime_UTR
TTGTTGTGAGCAGCATGTCA+AGG 0.604195 5_2:+16378612 Msa0760130:three_prime_UTR
CTTGCTGGATATCAATATGT+TGG 0.605565 5_2:+16377491 Msa0760130:CDS
GCCAAAACACTTGAAGACCA+AGG 0.614914 5_2:-16378307 None:intergenic
CTGGATATCAATATGTTGGT+GGG 0.639650 5_2:+16377495 Msa0760130:CDS
CAGTTTATGTCATATGTTGG+TGG 0.655648 5_2:+16379703 Msa0760130:three_prime_UTR
GAACACAGAGACAAATCAGA+AGG 0.663716 5_2:-16378248 None:intergenic
ATATATGTAGGGAGAGTGTG+TGG 0.666544 5_2:+16379592 Msa0760130:intron
AGGACACCAATACAAACAGT+CGG 0.686293 5_2:-16378351 None:intergenic
GTAGCACTAAAAGAAACCCA+AGG 0.688804 5_2:-16378476 None:intergenic
GGACTAATGTAATGCAGCAG+CGG 0.726893 5_2:+16378179 Msa0760130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAAGTTTTTTTTTTTTTA+AGG + chr5_2:16376687-16376706 Msa0760130:intron 10.0%
!! AAAATTATAAATTCCAAAAA+CGG - chr5_2:16376918-16376937 None:intergenic 10.0%
!! TGATTAAAAAAATGATAAAA+TGG - chr5_2:16377609-16377628 None:intergenic 10.0%
!!! ATATCATTATCATAAATTTT+AGG + chr5_2:16377761-16377780 Msa0760130:intron 10.0%
!!! AATTTTTTTCTTTGTTATAA+AGG + chr5_2:16378796-16378815 Msa0760130:intron 10.0%
!!! TTTTGATCAATTTAATTTTA+AGG + chr5_2:16379412-16379431 Msa0760130:intron 10.0%
!!! TATTTTTATTGTTTGTTGAT+AGG + chr5_2:16376820-16376839 Msa0760130:intron 15.0%
!!! ATCATTTTATCATTTATGTT+AGG + chr5_2:16377651-16377670 Msa0760130:intron 15.0%
!!! TATTCTATAAGCATATATTT+TGG - chr5_2:16378029-16378048 None:intergenic 15.0%
!! TTCTATACTTAATTGAAATA+AGG + chr5_2:16378945-16378964 Msa0760130:intron 15.0%
!! TCTATACTTAATTGAAATAA+GGG + chr5_2:16378946-16378965 Msa0760130:intron 15.0%
!! TATACAAAATCAATCTAAAT+TGG - chr5_2:16379511-16379530 None:intergenic 15.0%
!!! TAAGAAAGTATTCCAATATT+AGG + chr5_2:16376662-16376681 Msa0760130:intron 20.0%
!! AAAACTTTCATACCTAATAT+TGG - chr5_2:16376677-16376696 None:intergenic 20.0%
!!! TTTTCCATAAAAAAAATGTG+TGG + chr5_2:16376788-16376807 Msa0760130:intron 20.0%
!! GTGAATCAAAATAAAACAAA+TGG - chr5_2:16377301-16377320 None:intergenic 20.0%
!! GATATATGTTATCATGATTT+AGG + chr5_2:16377427-16377446 Msa0760130:intron 20.0%
!!! ATGATTTAGGTTTATTTCAT+TGG + chr5_2:16377440-16377459 Msa0760130:intron 20.0%
!! TTAAATACTTAAAGAAGAAC+AGG - chr5_2:16377560-16377579 None:intergenic 20.0%
!! TTGAAAGAAAAAGATACAAT+AGG + chr5_2:16377721-16377740 Msa0760130:intron 20.0%
!! TGAAAGAAAAAGATACAATA+GGG + chr5_2:16377722-16377741 Msa0760130:intron 20.0%
!!! GTTCATAACTTATTTTTGTA+AGG - chr5_2:16378579-16378598 None:intergenic 20.0%
!!! TGAAGACTTTTCAAAAAATA+TGG - chr5_2:16378777-16378796 None:intergenic 20.0%
!! GGATATAATATTATATTCTC+TGG + chr5_2:16378850-16378869 Msa0760130:intron 20.0%
!!! AATTTAAAATAACTACCAAC+AGG - chr5_2:16379170-16379189 None:intergenic 20.0%
!!! TGTTGGTAGTTATTTTAAAT+TGG + chr5_2:16379169-16379188 Msa0760130:intron 20.0%
!! AATCTATCAATTATAGTCTT+TGG + chr5_2:16379246-16379265 Msa0760130:intron 20.0%
!! TTGTTGACATAAGTAAATAT+TGG + chr5_2:16379367-16379386 Msa0760130:intron 20.0%
!! TGTTGACATAAGTAAATATT+GGG + chr5_2:16379368-16379387 Msa0760130:intron 20.0%
!! TTTAGTCCAATTTGGAATTA+AGG + chr5_2:16376432-16376451 Msa0760130:CDS 25.0%
! CAAATTAGAAGTAGTAGAAA+TGG - chr5_2:16376490-16376509 None:intergenic 25.0%
! ATATCTAATTTCTTCCAACA+GGG - chr5_2:16376564-16376583 None:intergenic 25.0%
!! TTTTATCTTCTAATGAGATC+TGG + chr5_2:16376636-16376655 Msa0760130:intron 25.0%
!! GTTTTATCTATGCTTAGTTA+TGG - chr5_2:16376749-16376768 None:intergenic 25.0%
!!! TAGTCCACACATTTTTTTTA+TGG - chr5_2:16376795-16376814 None:intergenic 25.0%
!!! TTAATTCCTCCTCATTTTTT+TGG + chr5_2:16376879-16376898 Msa0760130:intron 25.0%
!!! TAATTCCTCCTCATTTTTTT+GGG + chr5_2:16376880-16376899 Msa0760130:intron 25.0%
!!! CTTTCTAAAACTTCTTTGTT+TGG + chr5_2:16377360-16377379 Msa0760130:intron 25.0%
! AGTATTTAATTCTGATCACT+TGG + chr5_2:16377571-16377590 Msa0760130:intron 25.0%
!!! TGATTTTGGTTTGTTTTCTT+TGG + chr5_2:16378421-16378440 Msa0760130:three_prime_UTR 25.0%
!!! GATTTTGGTTTGTTTTCTTT+GGG + chr5_2:16378422-16378441 Msa0760130:three_prime_UTR 25.0%
! TTATGTAGTCTCAAAACTAT+AGG + chr5_2:16378549-16378568 Msa0760130:three_prime_UTR 25.0%
! AAATAAGTTATGAACCTTAG+TGG + chr5_2:16378584-16378603 Msa0760130:three_prime_UTR 25.0%
! TGTATTTGTGAGTATAAGTT+TGG + chr5_2:16378697-16378716 Msa0760130:three_prime_UTR 25.0%
! CAACAAAAAGTTACTATGTT+GGG - chr5_2:16379010-16379029 None:intergenic 25.0%
! AATAGAATGCACAAAATTTG+AGG + chr5_2:16379068-16379087 Msa0760130:intron 25.0%
! ATAGAATGCACAAAATTTGA+GGG + chr5_2:16379069-16379088 Msa0760130:intron 25.0%
!! TTATAGTCTTTGGAAAAACA+TGG + chr5_2:16379256-16379275 Msa0760130:intron 25.0%
! GTTGACATAAGTAAATATTG+GGG + chr5_2:16379369-16379388 Msa0760130:intron 25.0%
! TGGTGTGTATTTATATATGT+AGG + chr5_2:16379580-16379599 Msa0760130:intron 25.0%
! GGTGTGTATTTATATATGTA+GGG + chr5_2:16379581-16379600 Msa0760130:intron 25.0%
!! GTTGATACCTATAATTTTGA+AGG - chr5_2:16379628-16379647 None:intergenic 25.0%
! TCCAATTTGGAATTAAGGTA+TGG + chr5_2:16376437-16376456 Msa0760130:intron 30.0%
TCCATACCTTAATTCCAAAT+TGG - chr5_2:16376441-16376460 None:intergenic 30.0%
TATCTAATTTCTTCCAACAG+GGG - chr5_2:16376563-16376582 None:intergenic 30.0%
CATATCTAATTTCTTCCAAC+AGG - chr5_2:16376565-16376584 None:intergenic 30.0%
AGTAATGAGAAATTGTGTGT+AGG - chr5_2:16376616-16376635 None:intergenic 30.0%
ATTGCAGGCTATGATATATT+AGG - chr5_2:16376856-16376875 None:intergenic 30.0%
AGGAGGAATTAATTAATTGC+AGG - chr5_2:16376871-16376890 None:intergenic 30.0%
ATTGAAACGATTCAAGATAG+AGG - chr5_2:16377012-16377031 None:intergenic 30.0%
ACAAGCTTTCAAATTCAGAT+TGG + chr5_2:16377045-16377064 Msa0760130:intron 30.0%
!! AAATTCAGATTGGCTTTGTA+AGG + chr5_2:16377055-16377074 Msa0760130:intron 30.0%
! GACTTTTAAATTGTGGATGT+CGG + chr5_2:16377097-16377116 Msa0760130:intron 30.0%
CAGAATTGAAATTGAAGTAG+CGG - chr5_2:16377171-16377190 None:intergenic 30.0%
TTCAATTTCAATTCTGCCTT+TGG + chr5_2:16377175-16377194 Msa0760130:intron 30.0%
CGAACAAATTCTATCGTAAA+CGG - chr5_2:16377214-16377233 None:intergenic 30.0%
!! TTCTTTGTTTGGCCTTTTAA+TGG + chr5_2:16377371-16377390 Msa0760130:intron 30.0%
GCAAATGCAAATCCATTAAA+AGG - chr5_2:16377386-16377405 None:intergenic 30.0%
TATACAAACTCAATACATGC+TGG - chr5_2:16377521-16377540 None:intergenic 30.0%
! TCATTTTGTCTCATTCTGTT+AGG + chr5_2:16377678-16377697 Msa0760130:intron 30.0%
! CAATAAGAAGCATGGAATAA+AGG - chr5_2:16377955-16377974 None:intergenic 30.0%
TTGATACTCAATAAGAAGCA+TGG - chr5_2:16377963-16377982 None:intergenic 30.0%
!!! TTTTGGAGTTATGCTAACTA+AGG - chr5_2:16378012-16378031 None:intergenic 30.0%
!! TTTTCTGCATAATTTAGAGC+TGG + chr5_2:16378144-16378163 Msa0760130:CDS 30.0%
!!! CATAATTTAGAGCTGGTTTT+CGG + chr5_2:16378151-16378170 Msa0760130:CDS 30.0%
AAAAAACTCTGTTATGTAGC+AGG - chr5_2:16378220-16378239 None:intergenic 30.0%
! TTATTTGCTTCTCTTTTCCT+TGG + chr5_2:16378290-16378309 Msa0760130:three_prime_UTR 30.0%
! TTTTAACCGACTGTTTGTAT+TGG + chr5_2:16378345-16378364 Msa0760130:three_prime_UTR 30.0%
!! CTCTTTAGTGTAGTTGATTT+TGG + chr5_2:16378407-16378426 Msa0760130:three_prime_UTR 30.0%
ATGATCATTGAAGAACTTCT+TGG + chr5_2:16378657-16378676 Msa0760130:three_prime_UTR 30.0%
TGATCATTGAAGAACTTCTT+GGG + chr5_2:16378658-16378677 Msa0760130:three_prime_UTR 30.0%
CCAACAAAAAGTTACTATGT+TGG - chr5_2:16379011-16379030 None:intergenic 30.0%
! CCAACATAGTAACTTTTTGT+TGG + chr5_2:16379008-16379027 Msa0760130:intron 30.0%
!! TGAGGGAATATTTCTACTTT+TGG + chr5_2:16379086-16379105 Msa0760130:intron 30.0%
GCAAAGAAAGAACATTCAAA+CGG - chr5_2:16379447-16379466 None:intergenic 30.0%
TTGAATGTTCTTTCTTTGCT+TGG + chr5_2:16379448-16379467 Msa0760130:intron 30.0%
!! CTATAATTTTGAAGGCATGT+TGG - chr5_2:16379620-16379639 None:intergenic 30.0%
CAACATGCCTTCAAAATTAT+AGG + chr5_2:16379618-16379637 Msa0760130:three_prime_UTR 30.0%
CAAAATTATAGGTATCAACC+TGG + chr5_2:16379629-16379648 Msa0760130:three_prime_UTR 30.0%
TGGATTATGCAATAAGGAAT+CGG + chr5_2:16379649-16379668 Msa0760130:three_prime_UTR 30.0%
ATCAAGTTTGCATTCAAACT+TGG - chr5_2:16379793-16379812 None:intergenic 30.0%
CAAACAAATGCAAACATACA+AGG + chr5_2:16379834-16379853 Msa0760130:intron 30.0%
!! GTCAACTTTAGTTCTGCATA+AGG - chr5_2:16376403-16376422 None:intergenic 35.0%
TGCAGAACTAAAGTTGACAT+TGG + chr5_2:16376405-16376424 Msa0760130:CDS 35.0%
GCAGAACTAAAGTTGACATT+GGG + chr5_2:16376406-16376425 Msa0760130:CDS 35.0%
! TTGGGTTGTTTAGTCCAATT+TGG + chr5_2:16376424-16376443 Msa0760130:CDS 35.0%
CAACAACACCCAAAAAAATG+AGG - chr5_2:16376891-16376910 None:intergenic 35.0%
CTTGAATCGTTTCAATGCAT+TGG + chr5_2:16377016-16377035 Msa0760130:intron 35.0%
!! AAGGCTTTGAATCATATGTG+AGG + chr5_2:16377074-16377093 Msa0760130:intron 35.0%
!! AGGCTTTGAATCATATGTGA+GGG + chr5_2:16377075-16377094 Msa0760130:intron 35.0%
! TGTGAGGGACTTTTAAATTG+TGG + chr5_2:16377090-16377109 Msa0760130:intron 35.0%
CAAATGGTCCATAAAGAAGA+GGG - chr5_2:16377285-16377304 None:intergenic 35.0%
ACAAATGGTCCATAAAGAAG+AGG - chr5_2:16377286-16377305 None:intergenic 35.0%
CTTGCTGGATATCAATATGT+TGG + chr5_2:16377491-16377510 Msa0760130:CDS 35.0%
CTGGATATCAATATGTTGGT+GGG + chr5_2:16377495-16377514 Msa0760130:CDS 35.0%
TGTGCTTAACTATTCAGAGT+TGG + chr5_2:16378078-16378097 Msa0760130:CDS 35.0%
! AACTATTCAGAGTTGGTTCA+AGG + chr5_2:16378085-16378104 Msa0760130:CDS 35.0%
! AGACAAATCAGAAGGTATAG+AGG - chr5_2:16378243-16378262 None:intergenic 35.0%
!!! TTGGTTTGTTTTCTTTGGGA+TGG + chr5_2:16378426-16378445 Msa0760130:three_prime_UTR 35.0%
GATGGTTTCTTATGTTCTCT+TGG + chr5_2:16378444-16378463 Msa0760130:three_prime_UTR 35.0%
! TCTCTTGGTTCTTATTTCCT+TGG + chr5_2:16378459-16378478 Msa0760130:three_prime_UTR 35.0%
! CTCTTGGTTCTTATTTCCTT+GGG + chr5_2:16378460-16378479 Msa0760130:three_prime_UTR 35.0%
TCACAACAACTAATCCACTA+AGG - chr5_2:16378601-16378620 None:intergenic 35.0%
GATCATTGAAGAACTTCTTG+GGG + chr5_2:16378659-16378678 Msa0760130:three_prime_UTR 35.0%
TAGTGTAAGTCAACTGACAA+AGG + chr5_2:16378725-16378744 Msa0760130:intron 35.0%
! TTGTCAGCTTCATAGGTTTT+AGG + chr5_2:16378829-16378848 Msa0760130:intron 35.0%
! TGGATTTTGAACAACTCAGT+TGG + chr5_2:16378870-16378889 Msa0760130:intron 35.0%
CATGTCGTCTTCAATTGATA+TGG - chr5_2:16378913-16378932 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG + chr5_2:16378970-16378989 Msa0760130:intron 35.0%
TTCCTTATCTTGTGCCTTAA+GGG - chr5_2:16378987-16379006 None:intergenic 35.0%
ATTACTTATCTTGTGCCCTA+AGG + chr5_2:16379109-16379128 Msa0760130:intron 35.0%
TTACTTATCTTGTGCCCTAA+GGG + chr5_2:16379110-16379129 Msa0760130:intron 35.0%
! CAGGAGCACATTTATTTCAA+GGG - chr5_2:16379151-16379170 None:intergenic 35.0%
! ACAGGAGCACATTTATTTCA+AGG - chr5_2:16379152-16379171 None:intergenic 35.0%
TGAAATAAATGTGCTCCTGT+TGG + chr5_2:16379152-16379171 Msa0760130:intron 35.0%
!!! TTGGGGTTTTGAGTCTATTT+TGG + chr5_2:16379386-16379405 Msa0760130:intron 35.0%
!! TCAAAGAGCATTACTTTGTG+TGG + chr5_2:16379485-16379504 Msa0760130:intron 35.0%
TGCACATGATTTGAAAGATG+TGG + chr5_2:16379560-16379579 Msa0760130:intron 35.0%
TCAACCTGGATTATGCAATA+AGG + chr5_2:16379643-16379662 Msa0760130:three_prime_UTR 35.0%
GATTCCTTATTGCATAATCC+AGG - chr5_2:16379650-16379669 None:intergenic 35.0%
GTGCAGTTTATGTCATATGT+TGG + chr5_2:16379700-16379719 Msa0760130:three_prime_UTR 35.0%
CAGTTTATGTCATATGTTGG+TGG + chr5_2:16379703-16379722 Msa0760130:three_prime_UTR 35.0%
AATGCAAACATACAAGGATG+AGG + chr5_2:16379840-16379859 Msa0760130:intron 35.0%
AAGGCTTCATAAGCAATAGT+TGG + chr5_2:16379870-16379889 Msa0760130:three_prime_UTR 35.0%
!! AATAGTTGGTGCTAATCTGT+TGG + chr5_2:16379884-16379903 Msa0760130:three_prime_UTR 35.0%
CAACACCCAAAAAAATGAGG+AGG - chr5_2:16376888-16376907 None:intergenic 40.0%
!! GTGTTGTTGATCTCCGTTTT+TGG + chr5_2:16376902-16376921 Msa0760130:intron 40.0%
CGGCTAAATAGAAACACCAA+AGG - chr5_2:16377194-16377213 None:intergenic 40.0%
TCAAGCATGCAACAACGATT+AGG - chr5_2:16377254-16377273 None:intergenic 40.0%
ATCCATGACCCTCTTCTTTA+TGG + chr5_2:16377274-16377293 Msa0760130:intron 40.0%
GCTGGATATCAATATGTTGG+TGG + chr5_2:16377494-16377513 Msa0760130:CDS 40.0%
AGTTCGTGAGATTGATATCG+AGG + chr5_2:16377794-16377813 Msa0760130:intron 40.0%
GAACACAGAGACAAATCAGA+AGG - chr5_2:16378251-16378270 None:intergenic 40.0%
!! TCCTTGGTCTTCAAGTGTTT+TGG + chr5_2:16378306-16378325 Msa0760130:three_prime_UTR 40.0%
AGGACACCAATACAAACAGT+CGG - chr5_2:16378354-16378373 None:intergenic 40.0%
CAGAGTAGGTTGTTGTAGTT+TGG + chr5_2:16378384-16378403 Msa0760130:three_prime_UTR 40.0%
GTAGCACTAAAAGAAACCCA+AGG - chr5_2:16378479-16378498 None:intergenic 40.0%
! TGTGTTGTTGTCAGCTTCAT+AGG + chr5_2:16378822-16378841 Msa0760130:intron 40.0%
GTTCCTTATCTTGTGCCTTA+AGG - chr5_2:16378988-16379007 None:intergenic 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG - chr5_2:16379127-16379146 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG - chr5_2:16379128-16379147 None:intergenic 40.0%
! ATATATGTAGGGAGAGTGTG+TGG + chr5_2:16379592-16379611 Msa0760130:intron 40.0%
! ATGTCATATGTTGGTGGAAG+TGG + chr5_2:16379709-16379728 Msa0760130:three_prime_UTR 40.0%
ACAAGGATGAGGCAAACAAA+AGG + chr5_2:16379851-16379870 Msa0760130:intron 40.0%
CACTTTGTCTATTCCCCTGT+TGG + chr5_2:16376547-16376566 Msa0760130:intron 45.0%
GTCCATAAAGAAGAGGGTCA+TGG - chr5_2:16377279-16377298 None:intergenic 45.0%
TGGAGAAGATGCCATCTTGA+AGG + chr5_2:16377460-16377479 Msa0760130:CDS 45.0%
AAGCTCAAGCTCCTTCAAGA+TGG - chr5_2:16377474-16377493 None:intergenic 45.0%
CATAATTTCGAGCGAAGTCG+AGG + chr5_2:16378118-16378137 Msa0760130:CDS 45.0%
GGACTAATGTAATGCAGCAG+CGG + chr5_2:16378179-16378198 Msa0760130:CDS 45.0%
TAAAACCGACATGTTGCAGC+TGG - chr5_2:16378273-16378292 None:intergenic 45.0%
GCCAAAACACTTGAAGACCA+AGG - chr5_2:16378310-16378329 None:intergenic 45.0%
!!! TCCTGCTGCTTTTTCAGAGT+AGG + chr5_2:16378370-16378389 Msa0760130:three_prime_UTR 45.0%
! ACCTACTCTGAAAAAGCAGC+AGG - chr5_2:16378374-16378393 None:intergenic 45.0%
TTGTTGTGAGCAGCATGTCA+AGG + chr5_2:16378612-16378631 Msa0760130:three_prime_UTR 45.0%
GATATGGAATGAGCCATGCT+TGG - chr5_2:16378897-16378916 None:intergenic 45.0%
TGCCCTTAAGGCACAAGATA+AGG + chr5_2:16378982-16379001 Msa0760130:intron 45.0%
GTATGTTATGCTGCGCTGTG+TGG + chr5_2:16377121-16377140 Msa0760130:intron 50.0%
TTGAAGGAGCTTGAGCTTGC+TGG + chr5_2:16377476-16377495 Msa0760130:CDS 50.0%
!!! TAGAGCTGGTTTTCGGCATG+TGG + chr5_2:16378158-16378177 Msa0760130:CDS 50.0%
! GTAATGCAGCAGCGGTGTTT+TGG + chr5_2:16378187-16378206 Msa0760130:CDS 50.0%
GTGTTCCAGCTGCAACATGT+CGG + chr5_2:16378265-16378284 Msa0760130:three_prime_UTR 50.0%
CAACTCAGTTGGACCAAGCA+TGG + chr5_2:16378881-16378900 Msa0760130:intron 50.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 16376379 16379922 16376379 ID=Msa0760130;Name=Msa0760130
chr5_2 mRNA 16376379 16379922 16376379 ID=Msa0760130-mRNA-1;Parent=Msa0760130;Name=Msa0760130-mRNA-1;_AED=0.30;_eAED=0.35;_QI=0|0.5|0.6|0.8|0.5|0.4|5|696|101
chr5_2 exon 16376379 16376453 16376379 ID=Msa0760130-mRNA-1:exon:7233;Parent=Msa0760130-mRNA-1
chr5_2 exon 16377449 16377524 16377449 ID=Msa0760130-mRNA-1:exon:7234;Parent=Msa0760130-mRNA-1
chr5_2 exon 16378074 16378728 16378074 ID=Msa0760130-mRNA-1:exon:7235;Parent=Msa0760130-mRNA-1
chr5_2 exon 16379602 16379730 16379602 ID=Msa0760130-mRNA-1:exon:7236;Parent=Msa0760130-mRNA-1
chr5_2 exon 16379856 16379922 16379856 ID=Msa0760130-mRNA-1:exon:7237;Parent=Msa0760130-mRNA-1
chr5_2 CDS 16376379 16376453 16376379 ID=Msa0760130-mRNA-1:cds;Parent=Msa0760130-mRNA-1
chr5_2 CDS 16377449 16377524 16377449 ID=Msa0760130-mRNA-1:cds;Parent=Msa0760130-mRNA-1
chr5_2 CDS 16378074 16378228 16378074 ID=Msa0760130-mRNA-1:cds;Parent=Msa0760130-mRNA-1
chr5_2 three_prime_UTR 16378229 16378728 16378229 ID=Msa0760130-mRNA-1:three_prime_utr;Parent=Msa0760130-mRNA-1
chr5_2 three_prime_UTR 16379602 16379730 16379602 ID=Msa0760130-mRNA-1:three_prime_utr;Parent=Msa0760130-mRNA-1
chr5_2 three_prime_UTR 16379856 16379922 16379856 ID=Msa0760130-mRNA-1:three_prime_utr;Parent=Msa0760130-mRNA-1
Gene Sequence

>Msa0760130

ATGAAACTTTGTGCGTTACTTCCTTATGCAGAACTAAAGTTGACATTGGGTTGTTTAGTCCAATTTGGAATTAAGGTTTATTTCATTGGAGAAGATGCCATCTTGAAGGAGCTTGAGCTTGCTGGATATCAATATGTTGGTGGGCCAGCATATGTTGTGCTTAACTATTCAGAGTTGGTTCAAGGTAATTTTCGACATAATTTCGAGCGAAGTCGAGGCAATTTTCTGCATAATTTAGAGCTGGTTTTCGGCATGTGGACTAATGTAATGCAGCAGCGGTGTTTTGGTACTGCACCTGCTACATAA

Protein sequence

>Msa0760130

MKLCALLPYAELKLTLGCLVQFGIKVYFIGEDAILKELELAGYQYVGGPAYVVLNYSELVQGNFRHNFERSRGNFLHNLELVFGMWTNVMQQRCFGTAPAT*