AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1237060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237060 MtrunA17_Chr8g0347741 95.498 422 19 0 1 422 1 422 0.0 831
Msa1237060 MtrunA17_Chr7g0275321 70.396 429 114 7 1 421 1 424 0.0 588
Msa1237060 MtrunA17_Chr5g0410531 35.492 386 199 15 1 347 1 375 4.07e-47 166
Msa1237060 MtrunA17_Chr8g0369161 33.498 406 197 16 1 354 1 385 1.47e-41 151
Msa1237060 MtrunA17_Chr8g0373571 35.376 359 190 11 1 348 1 328 2.88e-39 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237060 AT2G46270.1 53.162 427 148 16 1 421 1 381 5.22e-119 352
Msa1237060 AT2G46270.3 53.162 427 148 16 1 421 1 381 5.22e-119 352
Msa1237060 AT2G46270.2 51.288 427 133 15 1 421 1 358 7.86e-109 325
Msa1237060 AT2G46270.4 51.288 427 133 15 1 421 1 358 7.86e-109 325
Msa1237060 AT4G01120.1 43.294 425 173 14 1 422 1 360 2.61e-83 259
Msa1237060 AT2G35530.1 35.897 351 166 17 36 347 42 372 7.72e-40 147
Msa1237060 AT4G36730.2 34.857 350 164 14 1 348 1 288 3.54e-36 135
Msa1237060 AT1G32150.1 36.104 385 185 18 1 347 1 362 1.28e-35 135
Msa1237060 AT4G36730.1 34.000 350 169 14 1 348 1 290 1.14e-34 131
Msa1237060 AT5G15830.1 40.566 106 58 3 272 375 67 169 5.57e-11 62.0

Find 132 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGTTAGCAGTAATTT+TGG 0.154999 8_2:+16325725 None:intergenic
CGCAGCTTTGCACCAGAATT+TGG 0.174496 8_2:+16325853 None:intergenic
TTATATCTTCAGGCATATTA+TGG 0.179056 8_2:-16328781 Msa1237060:intron
TGCATTGACTGCTGAGAATT+TGG 0.206598 8_2:-16326361 Msa1237060:CDS
GTTGTTGTCGTGTATCTTTC+AGG 0.247217 8_2:-16330838 Msa1237060:intron
TTTGTACATTGAAGAGAATT+AGG 0.276493 8_2:-16325570 Msa1237060:three_prime_UTR
GTTGGTGTCTCTATGCTTGT+AGG 0.281246 8_2:+16328049 None:intergenic
GAAAAGTAATAAATTAGTTT+TGG 0.291757 8_2:+16325657 None:intergenic
GTTGGACCTGTACTTTCTTC+AGG 0.296175 8_2:-16327154 Msa1237060:CDS
GATTGAAAATGCTACATTAA+AGG 0.302646 8_2:-16326289 Msa1237060:intron
GTTTGTTGATTATGTAGTTT+TGG 0.309343 8_2:-16325763 Msa1237060:three_prime_UTR
ACCCCTCCATGTGAATAAAA+TGG 0.310681 8_2:+16328509 None:intergenic
CTTCCTTAAATGAACGAAAA+TGG 0.313058 8_2:+16330960 None:intergenic
TTTGGAAGCAGCAGTCTCTT+TGG 0.315745 8_2:+16327219 None:intergenic
GTGCAGTTGAATAATTTCTA+AGG 0.328604 8_2:-16329768 Msa1237060:five_prime_UTR
ATTCGACGGGTTGGCTTGAT+TGG 0.332587 8_2:+16329563 None:intergenic
TGTGAGAGCAAACCAAATTC+TGG 0.337122 8_2:-16325865 Msa1237060:CDS
GAATGAATTGGCTGAAAATT+CGG 0.342200 8_2:-16326322 Msa1237060:CDS
AACCCACTTCGAAGAAAATA+AGG 0.344516 8_2:+16330894 None:intergenic
ATCAGTGTTTCCAGATGATT+TGG 0.348179 8_2:+16328027 None:intergenic
ACTATGCTTACAGTTGTTAC+AGG 0.353749 8_2:+16329663 None:intergenic
TGTGGAGCACTGGTGGAAAT+AGG 0.361837 8_2:+16327097 None:intergenic
AAAGCTGGAAAACACTCAAC+TGG 0.369633 8_2:-16326016 Msa1237060:CDS
TCCTGATTGGGCTGCCATGC+AGG 0.378974 8_2:-16329529 Msa1237060:intron
TATATCTTCAGGCATATTAT+GGG 0.390466 8_2:-16328780 Msa1237060:intron
TGTGGTGGTCCCCACATGTA+TGG 0.390846 8_2:+16328697 None:intergenic
GGAAGTATTTGACTCAATCT+TGG 0.394614 8_2:-16329747 Msa1237060:five_prime_UTR
AGAGCTGCAGAGGAAGAAAA+TGG 0.398971 8_2:-16325892 Msa1237060:CDS
GCAGCAGCTGAGTTGAAATA+TGG 0.399898 8_2:+16328739 None:intergenic
TCCTCTGCAGCTCTATCATC+AGG 0.402104 8_2:+16325901 None:intergenic
CAGCCTATGATGCATCCATA+TGG 0.403301 8_2:-16328548 Msa1237060:CDS
TGAGAATTTGGCGCTGAAAT+CGG 0.404953 8_2:-16326349 Msa1237060:CDS
ACTTTAGAAAGGGTTGTGAT+TGG 0.406895 8_2:-16325532 Msa1237060:three_prime_UTR
ATTGGAATCGATATATGATT+TGG 0.411970 8_2:-16325514 Msa1237060:three_prime_UTR
ACAGGCCGAGGCTGAAGAAT+TGG 0.415387 8_2:-16326397 Msa1237060:intron
ACCTGCATGGCAGCCCAATC+AGG 0.417831 8_2:+16329528 None:intergenic
GGTGCATATGGCGGCCCATA+TGG 0.422943 8_2:+16328533 None:intergenic
GCCTCCTGAAGCTTGGATGC+AGG 0.426706 8_2:-16327059 Msa1237060:intron
GACGGGCTTGCAATGTCAAT+AGG 0.426918 8_2:-16327974 Msa1237060:CDS
CAACAAACCAGTGCAAATAC+TGG 0.433037 8_2:+16325778 None:intergenic
ATCATCTGGAAACACTGATC+AGG 0.436322 8_2:-16328023 Msa1237060:CDS
GTTGCCATCGCTTCCATCGC+TGG 0.439957 8_2:+16327758 None:intergenic
AGAAGGCCTTTCAATCTTAA+CGG 0.439968 8_2:+16329689 None:intergenic
AAGATCCAGGCTTAGGAAGC+AGG 0.440032 8_2:-16326842 Msa1237060:intron
GAGACACCAACCAAATCATC+TGG 0.448010 8_2:-16328037 Msa1237060:CDS
ATGTTCACGTCTATCCTGAT+TGG 0.449162 8_2:-16329542 Msa1237060:CDS
TTCAACTCAGCTGCTGCTCC+TGG 0.457412 8_2:-16328733 Msa1237060:CDS
TGTTCACGTCTATCCTGATT+GGG 0.463031 8_2:-16329541 Msa1237060:CDS
AAACTTACAGCAGGCGAAGA+TGG 0.468175 8_2:+16328174 None:intergenic
GGCCCATATGGATGCATCAT+AGG 0.470629 8_2:+16328545 None:intergenic
GAAATCGGAAATGAATGAAT+TGG 0.472002 8_2:-16326334 Msa1237060:CDS
TTCAGGTATGACCACATCAC+TGG 0.473232 8_2:-16327137 Msa1237060:CDS
CAATCTTGGTGCTTATCTCA+TGG 0.479255 8_2:-16329733 Msa1237060:exon
GGCAAAACTCCACAAGGTTG+TGG 0.479999 8_2:+16327079 None:intergenic
GGAAGCGATGGCAACACTAC+AGG 0.486034 8_2:-16327750 Msa1237060:CDS
TCATACCTGCTTCCTAAGCC+TGG 0.486648 8_2:+16326837 None:intergenic
GAATAAAATGGTGGTGCATA+TGG 0.490133 8_2:+16328521 None:intergenic
AGTACCTGCATCCAAGCTTC+AGG 0.494330 8_2:+16327055 None:intergenic
CTGCAAGAAGATCCAGGCTT+AGG 0.497217 8_2:-16326849 Msa1237060:CDS
TGGTTGTTGGTGTCCCATCC+CGG 0.497265 8_2:+16327588 None:intergenic
TTTATCATACCAGTGGTTGT+TGG 0.502643 8_2:+16327575 None:intergenic
TCCACAAGGTTGTGGAGCAC+TGG 0.503689 8_2:+16327087 None:intergenic
ATATAGGGGTCGAATTCAAA+TGG 0.506926 8_2:-16328207 Msa1237060:intron
ACCTTATAGTATCTGAGAAA+AGG 0.515621 8_2:-16325461 Msa1237060:three_prime_UTR
GACGTGAACATTCGACGGGT+TGG 0.516747 8_2:+16329554 None:intergenic
TGGAACAAGGAAAAGAAGCC+GGG 0.517217 8_2:-16327606 Msa1237060:CDS
TCGTGCCAATTCTTCAGCCT+CGG 0.521120 8_2:+16326392 None:intergenic
TGCAGCTCTATCATCAGGAT+TGG 0.521412 8_2:+16325906 None:intergenic
ATTACTTGAATAGATGGAGA+AGG 0.522234 8_2:-16327271 Msa1237060:intron
ACAGTTGTTACAGGTGAAGA+AGG 0.523511 8_2:+16329672 None:intergenic
AGCCTATGATGCATCCATAT+GGG 0.523891 8_2:-16328547 Msa1237060:CDS
ATACATGTGGGGACCACCAC+AGG 0.528881 8_2:-16328695 Msa1237060:intron
TTACTTGAATAGATGGAGAA+GGG 0.530286 8_2:-16327270 Msa1237060:intron
CTCATGGGAAACAGCGAGGA+TGG 0.530777 8_2:-16329717 Msa1237060:CDS
AATCTTGGTGCTTATCTCAT+GGG 0.533227 8_2:-16329732 Msa1237060:exon
GAACAAACCTCCGTGATAGC+TGG 0.533419 8_2:+16327912 None:intergenic
ATGGAACAAGGAAAAGAAGC+CGG 0.533912 8_2:-16327607 Msa1237060:CDS
GAAAATCCGTTAAGATTGAA+AGG 0.538090 8_2:-16329695 Msa1237060:CDS
GTGAATCTGCAAGAAGATCC+AGG 0.538433 8_2:-16326855 Msa1237060:CDS
TTGAAAACCAGTATTTGCAC+TGG 0.541531 8_2:-16325785 Msa1237060:exon
GCTGCCACAGCATTAGCTCT+AGG 0.543381 8_2:+16325811 None:intergenic
AAATAGGAGAAGGGTTCCTC+AGG 0.546191 8_2:+16327113 None:intergenic
TGCTCCTCACCCATACATGT+GGG 0.547429 8_2:-16328707 Msa1237060:CDS
GATACTGAGGGTTCCAGCGA+TGG 0.548274 8_2:-16327771 Msa1237060:CDS
CAAGGAAAAGAAGCCGGGAT+GGG 0.549908 8_2:-16327601 Msa1237060:CDS
AAACTTACAATGGCAATGGC+AGG 0.559726 8_2:+16328476 None:intergenic
ACAAGGTTGTGGAGCACTGG+TGG 0.565799 8_2:+16327090 None:intergenic
ACCAGTGCTCCACAACCTTG+TGG 0.566848 8_2:-16327088 Msa1237060:CDS
TCATCTGGAAACACTGATCA+GGG 0.569446 8_2:-16328022 Msa1237060:CDS
GAAGCGATGGCAACACTACA+GGG 0.570248 8_2:-16327749 Msa1237060:CDS
GAGCTGAAAACCAGCTATCA+CGG 0.570429 8_2:-16327922 Msa1237060:CDS
TTTGAACGGCATTGACAAGA+GGG 0.571991 8_2:-16325974 Msa1237060:CDS
ACAAGGAAAAGAAGCCGGGA+TGG 0.577909 8_2:-16327602 Msa1237060:CDS
TATGGGTGAGGAGCATGACC+AGG 0.581544 8_2:+16328715 None:intergenic
GGTTCCAGCGATGGAAGCGA+TGG 0.582155 8_2:-16327762 Msa1237060:CDS
TTTCTGTTTAGATTTGATAG+GGG 0.582214 8_2:-16325609 Msa1237060:three_prime_UTR
TCCTGATGATAGAGCTGCAG+AGG 0.584828 8_2:-16325902 Msa1237060:CDS
GATGGGACACCAACAACCAC+TGG 0.585041 8_2:-16327584 Msa1237060:intron
GGTCCCCACATGTATGGGTG+AGG 0.585719 8_2:+16328703 None:intergenic
GCACTGGTGGAAATAGGAGA+AGG 0.586444 8_2:+16327103 None:intergenic
ATGTAAACTTACAATGGCAA+TGG 0.593587 8_2:+16328472 None:intergenic
ATGCTCCTCACCCATACATG+TGG 0.594125 8_2:-16328708 Msa1237060:CDS
CAAAAGGTTGGTAACCTGCA+TGG 0.594851 8_2:+16329515 None:intergenic
GTGTTTCCAGATGATTTGGT+TGG 0.595146 8_2:+16328031 None:intergenic
GGGTCGAATTCAAATGGTCA+AGG 0.595761 8_2:-16328201 Msa1237060:CDS
GTTCCTCAGGTCCAGTGATG+TGG 0.595870 8_2:+16327126 None:intergenic
CTATGGAGCACTACCTGTGG+TGG 0.596426 8_2:+16328682 None:intergenic
CTTGCAATGTCAATAGGCAA+TGG 0.600080 8_2:-16327968 Msa1237060:CDS
GTGGTGGTCCCCACATGTAT+GGG 0.604143 8_2:+16328698 None:intergenic
GCAGCTGAGTTGAAATATGG+TGG 0.615300 8_2:+16328742 None:intergenic
CAATGCTATGCACAGACCAA+TGG 0.615349 8_2:-16327626 Msa1237060:intron
TATCAACAGTGTGGATACTG+AGG 0.618321 8_2:-16327784 Msa1237060:intron
GTCATACCTGAAGAAAGTAC+AGG 0.620947 8_2:+16327148 None:intergenic
GATAGACGTGAACATTCGAC+GGG 0.622023 8_2:+16329550 None:intergenic
ATGCACAGACCAATGGAACA+AGG 0.622555 8_2:-16327619 Msa1237060:intron
AAGCTGGAAAACACTCAACT+GGG 0.626485 8_2:-16326015 Msa1237060:CDS
GGATAGACGTGAACATTCGA+CGG 0.628969 8_2:+16329549 None:intergenic
GTGAGCTGAAACGTGAGAGG+AGG 0.634017 8_2:-16326891 Msa1237060:CDS
AGCGTGAGCTGAAACGTGAG+AGG 0.634386 8_2:-16326894 Msa1237060:CDS
ACCTGCATCCAAGCTTCAGG+AGG 0.636392 8_2:+16327058 None:intergenic
TGACCACATCACTGGACCTG+AGG 0.641825 8_2:-16327129 Msa1237060:CDS
CACTGGTGGAAATAGGAGAA+GGG 0.645035 8_2:+16327104 None:intergenic
ATCAACAGTGTGGATACTGA+GGG 0.652441 8_2:-16327783 Msa1237060:intron
TCAGGAGGCAAAACTCCACA+AGG 0.685943 8_2:+16327073 None:intergenic
GCTCCTCACCCATACATGTG+GGG 0.694056 8_2:-16328706 Msa1237060:CDS
AAATCCTAGAGCTAATGCTG+TGG 0.699726 8_2:-16325815 Msa1237060:CDS
TAAAATGGTGGTGCATATGG+CGG 0.709796 8_2:+16328524 None:intergenic
TTATCTCATGGGAAACAGCG+AGG 0.711063 8_2:-16329721 Msa1237060:exon
AATGCTGAAAGTGCTGAGCG+TGG 0.716536 8_2:-16327944 Msa1237060:CDS
CCTCCATGTGAATAAAATGG+TGG 0.718697 8_2:+16328512 None:intergenic
AAGCGATGGCAACACTACAG+GGG 0.742066 8_2:-16327748 Msa1237060:intron
CTGAAAACCAGCTATCACGG+AGG 0.802626 8_2:-16327919 Msa1237060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGATGAAAATTAATAA+AGG - chr8_2:16325991-16326010 Msa1237060:CDS 10.0%
!! AATAGATGAAAATTAATAAA+GGG - chr8_2:16325992-16326011 Msa1237060:CDS 10.0%
!!! ATTATAAAATGTTTTAACAT+GGG + chr8_2:16326803-16326822 None:intergenic 10.0%
!!! TTTTTTAATTAATGATCTTA+TGG + chr8_2:16327146-16327165 None:intergenic 10.0%
!! ACAAAAATAAACATAAATTT+CGG + chr8_2:16328022-16328041 None:intergenic 10.0%
!! AATTATATTGGTAAAATATA+GGG - chr8_2:16328213-16328232 Msa1237060:intron 10.0%
!!! TAATTACATTCAATTTTTTT+TGG - chr8_2:16329085-16329104 Msa1237060:intron 10.0%
!! ACATAAAATTATTTATATCT+TGG - chr8_2:16330177-16330196 Msa1237060:intron 10.0%
!!! AAACCATATAATTTCTTTTT+CGG + chr8_2:16325766-16325785 None:intergenic 15.0%
!!! AAAATTAATAAAGGGTATTT+TGG - chr8_2:16326000-16326019 Msa1237060:CDS 15.0%
!!! CATTATAAAATGTTTTAACA+TGG + chr8_2:16326804-16326823 None:intergenic 15.0%
!!! CAATTAAATCTTACTTTTTA+TGG + chr8_2:16327074-16327093 None:intergenic 15.0%
!!! ATGTAAATTTATTTTTACAC+TGG - chr8_2:16327107-16327126 Msa1237060:CDS 15.0%
!! TATGTACTTATGAATTATAT+TGG - chr8_2:16328201-16328220 Msa1237060:CDS 15.0%
!! GAATTATATTGGTAAAATAT+AGG - chr8_2:16328212-16328231 Msa1237060:intron 15.0%
!! ATTATATTGGTAAAATATAG+GGG - chr8_2:16328214-16328233 Msa1237060:intron 15.0%
!!! GAAAAGTAATAAATTAGTTT+TGG + chr8_2:16330781-16330800 None:intergenic 15.0%
!!! AAAAAATCTGATTTTGTTCT+AGG - chr8_2:16325691-16325710 Msa1237060:three_prime_UTR 20.0%
!!! TATTTTTGCAAAAAAGTTGA+AGG - chr8_2:16326059-16326078 Msa1237060:intron 20.0%
!!! ATTTTTGCAAAAAAGTTGAA+GGG - chr8_2:16326060-16326079 Msa1237060:intron 20.0%
!! TTGTCATGTTAATTATGATA+AGG - chr8_2:16326088-16326107 Msa1237060:intron 20.0%
!!! AGTTATTGATTGACTAATTA+AGG - chr8_2:16326193-16326212 Msa1237060:intron 20.0%
!! AAACCAACTCTTTAAATTAA+AGG - chr8_2:16326396-16326415 Msa1237060:CDS 20.0%
!! CTATCTTATCAAATGATTAT+CGG - chr8_2:16326488-16326507 Msa1237060:intron 20.0%
!! ATTACTTTCTTGTTAATAAC+AGG - chr8_2:16326843-16326862 Msa1237060:CDS 20.0%
!! TAAGATTTAATTGATATGCA+CGG - chr8_2:16327081-16327100 Msa1237060:CDS 20.0%
!! GAAAAAGTTTAGTAGTTTAA+AGG - chr8_2:16327269-16327288 Msa1237060:intron 20.0%
!! TTGATATTTATAAACCAATG+TGG - chr8_2:16327359-16327378 Msa1237060:intron 20.0%
!!! AAGTTTTCATGAAAATATGT+AGG + chr8_2:16327437-16327456 None:intergenic 20.0%
!! TAACAAAATAAATGATCCTA+TGG + chr8_2:16327773-16327792 None:intergenic 20.0%
!! AAAATAAACATAAATTTCGG+CGG + chr8_2:16328019-16328038 None:intergenic 20.0%
!!! GCACTTTTAATTTATGAATA+TGG - chr8_2:16328073-16328092 Msa1237060:intron 20.0%
!! AGTATAAAAATAACCTTTGA+TGG + chr8_2:16328100-16328119 None:intergenic 20.0%
!! GGTTTAATGAAAAAATTGAA+AGG - chr8_2:16328434-16328453 Msa1237060:intron 20.0%
!! AAAAAATTGAAAGGATTTGA+CGG - chr8_2:16328443-16328462 Msa1237060:intron 20.0%
!! ATAAACAATAATAGTTGTTC+TGG - chr8_2:16328878-16328897 Msa1237060:intron 20.0%
!! TAATCAGAAATTTAAAAGCA+TGG + chr8_2:16329022-16329041 None:intergenic 20.0%
!! GTATTAATTACTTGAATAGA+TGG - chr8_2:16329158-16329177 Msa1237060:intron 20.0%
!!! TAAGATTTTAGTTCTACTAA+TGG - chr8_2:16329405-16329424 Msa1237060:intron 20.0%
!! AAAGAAAATATTCTCACAAA+AGG - chr8_2:16329982-16330001 Msa1237060:intron 20.0%
!! CTATTTAGTCAAATTATTAC+CGG + chr8_2:16330262-16330281 None:intergenic 20.0%
!!! TTATTACTTTTCAGTTTCTT+AGG - chr8_2:16330789-16330808 Msa1237060:intron 20.0%
!!! TTTTCTGTTTAGATTTGATA+GGG - chr8_2:16330825-16330844 Msa1237060:intron 20.0%
!!! TTAGTTTTTAGACTTTAGAA+AGG - chr8_2:16330892-16330911 Msa1237060:five_prime_UTR 20.0%
!!! TAGTTTTTAGACTTTAGAAA+GGG - chr8_2:16330893-16330912 Msa1237060:five_prime_UTR 20.0%
!!! TTTGGTTTTGTATTAACTAT+TGG - chr8_2:16330939-16330958 Msa1237060:five_prime_UTR 20.0%
!! TTACCATTTTCGTTCATTTA+AGG - chr8_2:16325472-16325491 Msa1237060:three_prime_UTR 25.0%
!! ATTTTCGTTCATTTAAGGAA+GGG - chr8_2:16325477-16325496 Msa1237060:three_prime_UTR 25.0%
! CATAAAAAAACAGCAATACT+CGG + chr8_2:16325519-16325538 None:intergenic 25.0%
! TCACCGAAAAAGAAATTATA+TGG - chr8_2:16325760-16325779 Msa1237060:three_prime_UTR 25.0%
!!! TAATAAAGGGTATTTTGGAT+CGG - chr8_2:16326005-16326024 Msa1237060:CDS 25.0%
!! AACATTAGATTTTCTTGCTA+AGG + chr8_2:16326249-16326268 None:intergenic 25.0%
!! ACACCTTTAATTTAAAGAGT+TGG + chr8_2:16326402-16326421 None:intergenic 25.0%
! ACAATAAAAAAGCAACAGAA+AGG + chr8_2:16326587-16326606 None:intergenic 25.0%
! ATAAAGGAAATGAAAGCAAA+AGG + chr8_2:16326939-16326958 None:intergenic 25.0%
!! CACCAAAAGTAGTTTTTAAT+GGG + chr8_2:16327620-16327639 None:intergenic 25.0%
!! TCACCAAAAGTAGTTTTTAA+TGG + chr8_2:16327621-16327640 None:intergenic 25.0%
! AAAGTTTCTGTTATATCTTC+AGG - chr8_2:16327644-16327663 Msa1237060:intron 25.0%
! TTATATCTTCAGGCATATTA+TGG - chr8_2:16327654-16327673 Msa1237060:intron 25.0%
! TATATCTTCAGGCATATTAT+GGG - chr8_2:16327655-16327674 Msa1237060:intron 25.0%
! AATAGACACAGAAATATCAA+TGG + chr8_2:16327798-16327817 None:intergenic 25.0%
! AAATAAACATAAATTTCGGC+GGG + chr8_2:16328018-16328037 None:intergenic 25.0%
! AAAAAATCAAAACTTACAGC+AGG + chr8_2:16328273-16328292 None:intergenic 25.0%
! TCATAATTTACAGTATTCAG+TGG + chr8_2:16328329-16328348 None:intergenic 25.0%
! CTGAATACTGTAAATTATGA+TGG - chr8_2:16328329-16328348 Msa1237060:intron 25.0%
! AAAAATTGAAAGGATTTGAC+GGG - chr8_2:16328444-16328463 Msa1237060:intron 25.0%
!! ATTTTCATGCTTCAATTTTC+CGG + chr8_2:16328783-16328802 None:intergenic 25.0%
! ATTATTGTTTATCATACCAG+TGG + chr8_2:16328870-16328889 None:intergenic 25.0%
!!! CAATTTTTTTTGGTGTCATA+TGG - chr8_2:16329095-16329114 Msa1237060:intron 25.0%
! ACGTGACAATTAAAAAAACA+CGG + chr8_2:16329658-16329677 None:intergenic 25.0%
!! TTTTATGCATTTGTTTGGAT+TGG - chr8_2:16329680-16329699 Msa1237060:CDS 25.0%
!!! TGAAAACAACTTCTAGAATA+TGG - chr8_2:16329823-16329842 Msa1237060:intron 25.0%
! TTAAGTTATTTACCCAAACA+CGG - chr8_2:16329932-16329951 Msa1237060:intron 25.0%
!! GTGAGAATATTTTCTTTCAA+AGG + chr8_2:16329979-16329998 None:intergenic 25.0%
! GATTGAAAATGCTACATTAA+AGG - chr8_2:16330146-16330165 Msa1237060:intron 25.0%
! TTTATATCTTGGCATTTCAT+AGG - chr8_2:16330188-16330207 Msa1237060:intron 25.0%
!!! AGTATAGATAATTTTGACTC+AGG - chr8_2:16330395-16330414 Msa1237060:intron 25.0%
!! ACAGAAGAGATAATTTTGAA+CGG - chr8_2:16330447-16330466 Msa1237060:intron 25.0%
!!! GTTTGTTGATTATGTAGTTT+TGG - chr8_2:16330672-16330691 Msa1237060:intron 25.0%
!! AAAACTGTTAGCAGTAATTT+TGG + chr8_2:16330713-16330732 None:intergenic 25.0%
!!! TAAATTAGTTTTGGCATTGA+TGG + chr8_2:16330772-16330791 None:intergenic 25.0%
!! GTTTTCTGTTTAGATTTGAT+AGG - chr8_2:16330824-16330843 Msa1237060:intron 25.0%
! TTTCTGTTTAGATTTGATAG+GGG - chr8_2:16330826-16330845 Msa1237060:intron 25.0%
! TTTGTACATTGAAGAGAATT+AGG - chr8_2:16330865-16330884 Msa1237060:five_prime_UTR 25.0%
! ATTGGAATCGATATATGATT+TGG - chr8_2:16330921-16330940 Msa1237060:five_prime_UTR 25.0%
CTTCCTTAAATGAACGAAAA+TGG + chr8_2:16325478-16325497 None:intergenic 30.0%
! CATTTTCGTTCATTTAAGGA+AGG - chr8_2:16325476-16325495 Msa1237060:three_prime_UTR 30.0%
!!! TTCCTTATTTTCTTCGAAGT+GGG - chr8_2:16325539-16325558 Msa1237060:three_prime_UTR 30.0%
TTGAAAGAACAAAACAACGT+TGG + chr8_2:16325654-16325673 None:intergenic 30.0%
!!! AATAAAGGGTATTTTGGATC+GGG - chr8_2:16326006-16326025 Msa1237060:CDS 30.0%
AAGACATCTTTGACTCTATA+AGG - chr8_2:16326167-16326186 Msa1237060:intron 30.0%
GATTGACTAATTAAGGTCTT+TGG - chr8_2:16326200-16326219 Msa1237060:intron 30.0%
TTTCTCTATAGTAGCTTACT+AGG - chr8_2:16326283-16326302 Msa1237060:intron 30.0%
ATTCAACTGCACTAAACAAA+AGG + chr8_2:16326659-16326678 None:intergenic 30.0%
GTGCAGTTGAATAATTTCTA+AGG - chr8_2:16326667-16326686 Msa1237060:intron 30.0%
GAAAATCCGTTAAGATTGAA+AGG - chr8_2:16326740-16326759 Msa1237060:intron 30.0%
ATAACAAAAACGAAAACTCC+AGG + chr8_2:16326963-16326982 None:intergenic 30.0%
AGTTTAGTAGTTTAAAGGTG+TGG - chr8_2:16327274-16327293 Msa1237060:intron 30.0%
AGTATGGAAATCAACAAAGT+CGG + chr8_2:16327300-16327319 None:intergenic 30.0%
AAAGAGTAAAGTAGCTAGTA+TGG + chr8_2:16327316-16327335 None:intergenic 30.0%
AATGGGGGAAATTTCAAATA+AGG + chr8_2:16327466-16327485 None:intergenic 30.0%
ATTTGAGAGCCAATCAAAAT+GGG + chr8_2:16327483-16327502 None:intergenic 30.0%
AATTTGAGAGCCAATCAAAA+TGG + chr8_2:16327484-16327503 None:intergenic 30.0%
!! TTTTGATTGGCTCTCAAATT+CGG - chr8_2:16327484-16327503 Msa1237060:intron 30.0%
! AACTGGATTTGATAATCTGT+GGG - chr8_2:16327525-16327544 Msa1237060:intron 30.0%
TTCAAAAGTGAAAGCAATCT+GGG + chr8_2:16327589-16327608 None:intergenic 30.0%
TTTCAAAAGTGAAAGCAATC+TGG + chr8_2:16327590-16327609 None:intergenic 30.0%
! TGCCCATTAAAAACTACTTT+TGG - chr8_2:16327615-16327634 Msa1237060:intron 30.0%
ATGTAAACTTACAATGGCAA+TGG + chr8_2:16327966-16327985 None:intergenic 30.0%
AGTTTACATTCTCGCAATAT+TGG - chr8_2:16327977-16327996 Msa1237060:CDS 30.0%
TTATGAATATGGACCATCAA+AGG - chr8_2:16328084-16328103 Msa1237060:intron 30.0%
AGATAAACATTCAACCACAA+AGG + chr8_2:16328182-16328201 None:intergenic 30.0%
ATTCAGTGGATCAAAAGATT+CGG + chr8_2:16328315-16328334 None:intergenic 30.0%
!! AAATTATGATGGATTTGACC+TGG - chr8_2:16328340-16328359 Msa1237060:intron 30.0%
!! AATTATGATGGATTTGACCT+GGG - chr8_2:16328341-16328360 Msa1237060:intron 30.0%
! TACGAGTTTGTTTCTCTATT+AGG - chr8_2:16328594-16328613 Msa1237060:intron 30.0%
ATGATGATATATCAACAGTG+TGG - chr8_2:16328642-16328661 Msa1237060:intron 30.0%
!! CTGTCTTATTTATAATGACC+CGG - chr8_2:16328761-16328780 Msa1237060:CDS 30.0%
! TTTTCATGCTTCAATTTTCC+GGG + chr8_2:16328782-16328801 None:intergenic 30.0%
CTGGATTACAAATATACTTC+TGG - chr8_2:16328897-16328916 Msa1237060:intron 30.0%
TCAATGAATTGTTGACACTA+TGG + chr8_2:16328942-16328961 None:intergenic 30.0%
ATCATGCATTAACAATTGGA+TGG + chr8_2:16328987-16329006 None:intergenic 30.0%
CCTTATCATGCATTAACAAT+TGG + chr8_2:16328991-16329010 None:intergenic 30.0%
CCAATTGTTAATGCATGATA+AGG - chr8_2:16328988-16329007 Msa1237060:intron 30.0%
GAATTATTTGATACCAAGAC+TGG - chr8_2:16329046-16329065 Msa1237060:intron 30.0%
!! ATGTAATTAACTCTGAAACG+AGG + chr8_2:16329074-16329093 None:intergenic 30.0%
CGTTATCTACTAGTAACTTA+AGG - chr8_2:16329136-16329155 Msa1237060:intron 30.0%
ATTACTTGAATAGATGGAGA+AGG - chr8_2:16329164-16329183 Msa1237060:intron 30.0%
TTACTTGAATAGATGGAGAA+GGG - chr8_2:16329165-16329184 Msa1237060:intron 30.0%
TGAATCACACAACAATAATG+CGG - chr8_2:16329463-16329482 Msa1237060:intron 30.0%
ACTGACACTAAAGTAATTCT+TGG - chr8_2:16329500-16329519 Msa1237060:intron 30.0%
!! CGTGTTTTTATGCATTTGTT+TGG - chr8_2:16329675-16329694 Msa1237060:CDS 30.0%
AATAAGCTGAAAAGAGCTTA+TGG + chr8_2:16329779-16329798 None:intergenic 30.0%
!! GTTGTTTTCATAAACTATCC+TGG + chr8_2:16329813-16329832 None:intergenic 30.0%
GAAATCGGAAATGAATGAAT+TGG - chr8_2:16330101-16330120 Msa1237060:intron 30.0%
GAATGAATTGGCTGAAAATT+CGG - chr8_2:16330113-16330132 Msa1237060:intron 30.0%
! AGTAAGTTTTCTGTACTTAC+AGG + chr8_2:16330492-16330511 None:intergenic 30.0%
! TACTGCTAACAGTTTTCAAA+TGG - chr8_2:16330717-16330736 Msa1237060:intron 30.0%
ACCTTATAGTATCTGAGAAA+AGG - chr8_2:16330974-16330993 Msa1237060:five_prime_UTR 30.0%
! ACCTTTTCTCAGATACTATA+AGG + chr8_2:16330978-16330997 None:intergenic 30.0%
AAAAAAACAGCAATACTCGG+AGG + chr8_2:16325516-16325535 None:intergenic 35.0%
!!! GTTCCTTATTTTCTTCGAAG+TGG - chr8_2:16325538-16325557 Msa1237060:three_prime_UTR 35.0%
AACCCACTTCGAAGAAAATA+AGG + chr8_2:16325544-16325563 None:intergenic 35.0%
! AGAGTGAATTTTCTGTAACC+TGG - chr8_2:16325832-16325851 Msa1237060:CDS 35.0%
ACATACATAACACAAGATCC+AGG + chr8_2:16325853-16325872 None:intergenic 35.0%
!! TATTGTACGTGACTTGTTTG+TGG - chr8_2:16326135-16326154 Msa1237060:intron 35.0%
!! ATTGTACGTGACTTGTTTGT+GGG - chr8_2:16326136-16326155 Msa1237060:intron 35.0%
!! GGAAGTATTTGACTCAATCT+TGG - chr8_2:16326688-16326707 Msa1237060:intron 35.0%
!! AATCTTGGTGCTTATCTCAT+GGG - chr8_2:16326703-16326722 Msa1237060:intron 35.0%
AGAAGGCCTTTCAATCTTAA+CGG + chr8_2:16326749-16326768 None:intergenic 35.0%
ACTATGCTTACAGTTGTTAC+AGG + chr8_2:16326775-16326794 None:intergenic 35.0%
AGGAAATGAAAGCAAAAGGT+TGG + chr8_2:16326935-16326954 None:intergenic 35.0%
GCTTTCATTTCCTTTATACC+TGG - chr8_2:16326942-16326961 Msa1237060:intron 35.0%
AACGAAAACTCCAGGTATAA+AGG + chr8_2:16326955-16326974 None:intergenic 35.0%
CTGAAGTGAAGATAGCTAAA+CGG + chr8_2:16326986-16327005 None:intergenic 35.0%
! CACAAATGATGGTTTGTGAT+TGG - chr8_2:16327198-16327217 Msa1237060:CDS 35.0%
AGATTACTGACATTGAAGCA+CGG + chr8_2:16327411-16327430 None:intergenic 35.0%
!! GAAATTTCCCCCATTTTGAT+TGG - chr8_2:16327471-16327490 Msa1237060:intron 35.0%
TTTGAGAGCCAATCAAAATG+GGG + chr8_2:16327482-16327501 None:intergenic 35.0%
! CAACTGGATTTGATAATCTG+TGG - chr8_2:16327524-16327543 Msa1237060:intron 35.0%
! ACTGGATTTGATAATCTGTG+GGG - chr8_2:16327526-16327545 Msa1237060:intron 35.0%
! ATTTGATAATCTGTGGGGAA+CGG - chr8_2:16327531-16327550 Msa1237060:intron 35.0%
! ATCTATGACGGGATTTACAT+CGG - chr8_2:16327562-16327581 Msa1237060:intron 35.0%
GGCTGAAAGAAACAATAAGT+TGG + chr8_2:16327872-16327891 None:intergenic 35.0%
! GAATAAAATGGTGGTGCATA+TGG + chr8_2:16327917-16327936 None:intergenic 35.0%
! CACCATTTTATTCACATGGA+GGG - chr8_2:16327924-16327943 Msa1237060:CDS 35.0%
! ACCATTTTATTCACATGGAG+GGG - chr8_2:16327925-16327944 Msa1237060:CDS 35.0%
GCGAGAATGTAAACTTACAA+TGG + chr8_2:16327972-16327991 None:intergenic 35.0%
CTTAATGTACCAAACCTTTG+TGG - chr8_2:16328165-16328184 Msa1237060:intron 35.0%
AACATTCAACCACAAAGGTT+TGG + chr8_2:16328177-16328196 None:intergenic 35.0%
ATATAGGGGTCGAATTCAAA+TGG - chr8_2:16328228-16328247 Msa1237060:intron 35.0%
!! ATTATGATGGATTTGACCTG+GGG - chr8_2:16328342-16328361 Msa1237060:intron 35.0%
ATCAGTGTTTCCAGATGATT+TGG + chr8_2:16328411-16328430 None:intergenic 35.0%
GTTTCTCTATTAGGTTCATG+TGG - chr8_2:16328603-16328622 Msa1237060:intron 35.0%
TTTATCATACCAGTGGTTGT+TGG + chr8_2:16328863-16328882 None:intergenic 35.0%
TTTAGTGTCAGTAAAAGACG+AGG + chr8_2:16329492-16329511 None:intergenic 35.0%
TAAACACATGTGAGACTGTT+CGG - chr8_2:16329723-16329742 Msa1237060:exon 35.0%
GAGCATATAGAAACAGCTTA+TGG - chr8_2:16329748-16329767 Msa1237060:five_prime_UTR 35.0%
ATTTCATAGGCTACAAAGCA+TGG - chr8_2:16330201-16330220 Msa1237060:intron 35.0%
!!! AATTTTGACTCAGGAAAAGC+TGG - chr8_2:16330404-16330423 Msa1237060:intron 35.0%
TTGAAAACCAGTATTTGCAC+TGG - chr8_2:16330650-16330669 Msa1237060:intron 35.0%
! GCTAACAGTTTTCAAATGGA+TGG - chr8_2:16330721-16330740 Msa1237060:intron 35.0%
! GGATGGATCAGTTGAATTTT+AGG - chr8_2:16330738-16330757 Msa1237060:intron 35.0%
! ACTTTAGAAAGGGTTGTGAT+TGG - chr8_2:16330903-16330922 Msa1237060:five_prime_UTR 35.0%
GTTGTTGTCGTGTATCTTTC+AGG - chr8_2:16325597-16325616 Msa1237060:three_prime_UTR 40.0%
!! TTGTACGTGACTTGTTTGTG+GGG - chr8_2:16326137-16326156 Msa1237060:intron 40.0%
CACATGTCAGACGTACATTT+GGG + chr8_2:16326426-16326445 None:intergenic 40.0%
ACACATGTCAGACGTACATT+TGG + chr8_2:16326427-16326446 None:intergenic 40.0%
!! CAATCTTGGTGCTTATCTCA+TGG - chr8_2:16326702-16326721 Msa1237060:intron 40.0%
ACAGTTGTTACAGGTGAAGA+AGG + chr8_2:16326766-16326785 None:intergenic 40.0%
ATGTTCACGTCTATCCTGAT+TGG - chr8_2:16326893-16326912 Msa1237060:CDS 40.0%
TGTTCACGTCTATCCTGATT+GGG - chr8_2:16326894-16326913 Msa1237060:CDS 40.0%
! TCGTAAAAGCGCACAAATGA+TGG - chr8_2:16327187-16327206 Msa1237060:CDS 40.0%
TTGAGAGCCAATCAAAATGG+GGG + chr8_2:16327481-16327500 None:intergenic 40.0%
ATAGTGTCACAACTTGCAAC+TGG - chr8_2:16327508-16327527 Msa1237060:intron 40.0%
! ACGGACTATGGTATCTATGA+CGG - chr8_2:16327550-16327569 Msa1237060:intron 40.0%
TTCGAGCAAGGATTTACACA+AGG + chr8_2:16327834-16327853 None:intergenic 40.0%
TTGTGTAAATCCTTGCTCGA+AGG - chr8_2:16327833-16327852 Msa1237060:intron 40.0%
TGTGTAAATCCTTGCTCGAA+GGG - chr8_2:16327834-16327853 Msa1237060:intron 40.0%
ATTATTCATCCCTTCGAGCA+AGG + chr8_2:16327846-16327865 None:intergenic 40.0%
AGCCTATGATGCATCCATAT+GGG - chr8_2:16327888-16327907 Msa1237060:intron 40.0%
! TAAAATGGTGGTGCATATGG+CGG + chr8_2:16327914-16327933 None:intergenic 40.0%
! GCACCACCATTTTATTCACA+TGG - chr8_2:16327920-16327939 Msa1237060:CDS 40.0%
CCTCCATGTGAATAAAATGG+TGG + chr8_2:16327926-16327945 None:intergenic 40.0%
! CCACCATTTTATTCACATGG+AGG - chr8_2:16327923-16327942 Msa1237060:CDS 40.0%
ACCCCTCCATGTGAATAAAA+TGG + chr8_2:16327929-16327948 None:intergenic 40.0%
AAACTTACAATGGCAATGGC+AGG + chr8_2:16327962-16327981 None:intergenic 40.0%
!! TTATGATGGATTTGACCTGG+GGG - chr8_2:16328343-16328362 Msa1237060:intron 40.0%
!! GTGTTTCCAGATGATTTGGT+TGG + chr8_2:16328407-16328426 None:intergenic 40.0%
ATCATCTGGAAACACTGATC+AGG - chr8_2:16328412-16328431 Msa1237060:intron 40.0%
TCATCTGGAAACACTGATCA+GGG - chr8_2:16328413-16328432 Msa1237060:intron 40.0%
CTTGCAATGTCAATAGGCAA+TGG - chr8_2:16328467-16328486 Msa1237060:intron 40.0%
! ATAGGAAGTGCAGTCAATTC+TGG + chr8_2:16328562-16328581 None:intergenic 40.0%
AGAAACAAACTCGTACAGCA+AGG + chr8_2:16328589-16328608 None:intergenic 40.0%
TATCAACAGTGTGGATACTG+AGG - chr8_2:16328651-16328670 Msa1237060:intron 40.0%
ATCAACAGTGTGGATACTGA+GGG - chr8_2:16328652-16328671 Msa1237060:intron 40.0%
! CTACAGGGGTGAGAAATTTT+TGG - chr8_2:16328701-16328720 Msa1237060:CDS 40.0%
! GCTTCTTTTCCTTGTTCCAT+TGG + chr8_2:16328828-16328847 None:intergenic 40.0%
ATGGAACAAGGAAAAGAAGC+CGG - chr8_2:16328828-16328847 Msa1237060:intron 40.0%
! GATAACTGACACCGTCTTTT+TGG + chr8_2:16329237-16329256 None:intergenic 40.0%
AACCAGTGCTGCAGAAAAAA+TGG - chr8_2:16329259-16329278 Msa1237060:intron 40.0%
!!! AACCATTTTTTCTGCAGCAC+TGG + chr8_2:16329264-16329283 None:intergenic 40.0%
AGTGCTGCAGAAAAAATGGT+TGG - chr8_2:16329263-16329282 Msa1237060:intron 40.0%
! GTCATACCTGAAGAAAGTAC+AGG + chr8_2:16329290-16329309 None:intergenic 40.0%
AAACTATCCTGGTGAGCTTA+GGG + chr8_2:16329802-16329821 None:intergenic 40.0%
TAAACTATCCTGGTGAGCTT+AGG + chr8_2:16329803-16329822 None:intergenic 40.0%
!! TGCATTGACTGCTGAGAATT+TGG - chr8_2:16330074-16330093 Msa1237060:intron 40.0%
! TGAGAATTTGGCGCTGAAAT+CGG - chr8_2:16330086-16330105 Msa1237060:intron 40.0%
TACAAATGTCAATGTCGTGC+TGG - chr8_2:16330298-16330317 Msa1237060:intron 40.0%
!!! TTTTGAACGGCATTGACAAG+AGG - chr8_2:16330460-16330479 Msa1237060:intron 40.0%
!! TTTGAACGGCATTGACAAGA+GGG - chr8_2:16330461-16330480 Msa1237060:intron 40.0%
TGTGAGAGCAAACCAAATTC+TGG - chr8_2:16330570-16330589 Msa1237060:intron 40.0%
AAATCCTAGAGCTAATGCTG+TGG - chr8_2:16330620-16330639 Msa1237060:intron 40.0%
CAACAAACCAGTGCAAATAC+TGG + chr8_2:16330660-16330679 None:intergenic 40.0%
GTACGTCTGACATGTGTTGA+TGG - chr8_2:16326430-16326449 Msa1237060:intron 45.0%
ATGAAGCAGCGACACAGATA+TGG + chr8_2:16326538-16326557 None:intergenic 45.0%
TTATCTCATGGGAAACAGCG+AGG - chr8_2:16326714-16326733 Msa1237060:intron 45.0%
GATAGACGTGAACATTCGAC+GGG + chr8_2:16326888-16326907 None:intergenic 45.0%
GGATAGACGTGAACATTCGA+CGG + chr8_2:16326889-16326908 None:intergenic 45.0%
!! CAAAAGGTTGGTAACCTGCA+TGG + chr8_2:16326923-16326942 None:intergenic 45.0%
CGATGAAGACAACTCCACAT+TGG + chr8_2:16327376-16327395 None:intergenic 45.0%
CGGACTATGGTATCTATGAC+GGG - chr8_2:16327551-16327570 Msa1237060:intron 45.0%
! GCAGCTGAGTTGAAATATGG+TGG + chr8_2:16327696-16327715 None:intergenic 45.0%
! GCAGCAGCTGAGTTGAAATA+TGG + chr8_2:16327699-16327718 None:intergenic 45.0%
GCAAGGATTTACACAAGGAC+AGG + chr8_2:16327829-16327848 None:intergenic 45.0%
CAGCCTATGATGCATCCATA+TGG - chr8_2:16327887-16327906 Msa1237060:intron 45.0%
GGGTCGAATTCAAATGGTCA+AGG - chr8_2:16328234-16328253 Msa1237060:intron 45.0%
AAACTTACAGCAGGCGAAGA+TGG + chr8_2:16328264-16328283 None:intergenic 45.0%
!! TATGATGGATTTGACCTGGG+GGG - chr8_2:16328344-16328363 Msa1237060:intron 45.0%
! GTTGGTGTCTCTATGCTTGT+AGG + chr8_2:16328389-16328408 None:intergenic 45.0%
GAGACACCAACCAAATCATC+TGG - chr8_2:16328398-16328417 Msa1237060:intron 45.0%
GAGCTGAAAACCAGCTATCA+CGG - chr8_2:16328513-16328532 Msa1237060:CDS 45.0%
! ATCACGGAGGTTTGTTCAGT+AGG - chr8_2:16328529-16328548 Msa1237060:CDS 45.0%
GACTACTAGTGTACGCAACT+GGG + chr8_2:16328742-16328761 None:intergenic 45.0%
AGACTACTAGTGTACGCAAC+TGG + chr8_2:16328743-16328762 None:intergenic 45.0%
! CATTGGTCTGTGCATAGCAT+TGG + chr8_2:16328811-16328830 None:intergenic 45.0%
CAATGCTATGCACAGACCAA+TGG - chr8_2:16328809-16328828 Msa1237060:intron 45.0%
ATGCACAGACCAATGGAACA+AGG - chr8_2:16328816-16328835 Msa1237060:intron 45.0%
TGGAACAAGGAAAAGAAGCC+GGG - chr8_2:16328829-16328848 Msa1237060:intron 45.0%
TTTGGAAGCAGCAGTCTCTT+TGG + chr8_2:16329219-16329238 None:intergenic 45.0%
! GACTGCTGCTTCCAAAAAGA+CGG - chr8_2:16329223-16329242 Msa1237060:intron 45.0%
GTTGGACCTGTACTTTCTTC+AGG - chr8_2:16329281-16329300 Msa1237060:intron 45.0%
TTCAGGTATGACCACATCAC+TGG - chr8_2:16329298-16329317 Msa1237060:intron 45.0%
AAATAGGAGAAGGGTTCCTC+AGG + chr8_2:16329325-16329344 None:intergenic 45.0%
CACTGGTGGAAATAGGAGAA+GGG + chr8_2:16329334-16329353 None:intergenic 45.0%
TTCAGCTCACGCTCATTCTA+AGG + chr8_2:16329534-16329553 None:intergenic 45.0%
GTGAATCTGCAAGAAGATCC+AGG - chr8_2:16329580-16329599 Msa1237060:intron 45.0%
GGCTACATGTACATGCATCA+GGG + chr8_2:16329958-16329977 None:intergenic 45.0%
AGGCTACATGTACATGCATC+AGG + chr8_2:16329959-16329978 None:intergenic 45.0%
CGTTCTTATCTCCTCTGTAC+AGG - chr8_2:16330020-16330039 Msa1237060:intron 45.0%
TAGGCTACAAAGCATGGACA+CGG - chr8_2:16330207-16330226 Msa1237060:intron 45.0%
CGACATTGACACATTGACAC+CGG - chr8_2:16330240-16330259 Msa1237060:intron 45.0%
GCAGCGATGCTTCATATTGA+AGG + chr8_2:16330345-16330364 None:intergenic 45.0%
TGCAGCTCTATCATCAGGAT+TGG + chr8_2:16330532-16330551 None:intergenic 45.0%
AGAGCTGCAGAGGAAGAAAA+TGG - chr8_2:16330543-16330562 Msa1237060:intron 45.0%
!! ATTCGACGGGTTGGCTTGAT+TGG + chr8_2:16326875-16326894 None:intergenic 50.0%
!! AATCTGTGGGGAACGGACTA+TGG - chr8_2:16327538-16327557 Msa1237060:intron 50.0%
ATGCTCCTCACCCATACATG+TGG - chr8_2:16327727-16327746 Msa1237060:intron 50.0%
TGCTCCTCACCCATACATGT+GGG - chr8_2:16327728-16327747 Msa1237060:intron 50.0%
! ATCCTATGGAGCACTACCTG+TGG + chr8_2:16327759-16327778 None:intergenic 50.0%
GGCCCATATGGATGCATCAT+AGG + chr8_2:16327893-16327912 None:intergenic 50.0%
! GACGGGCTTGCAATGTCAAT+AGG - chr8_2:16328461-16328480 Msa1237060:intron 50.0%
!! AATGCTGAAAGTGCTGAGCG+TGG - chr8_2:16328491-16328510 Msa1237060:CDS 50.0%
CTGAAAACCAGCTATCACGG+AGG - chr8_2:16328516-16328535 Msa1237060:CDS 50.0%
GAACAAACCTCCGTGATAGC+TGG + chr8_2:16328526-16328545 None:intergenic 50.0%
CTCGTACAGCAAGGAGACAT+AGG + chr8_2:16328580-16328599 None:intergenic 50.0%
GAAGCGATGGCAACACTACA+GGG - chr8_2:16328686-16328705 Msa1237060:intron 50.0%
AAGCGATGGCAACACTACAG+GGG - chr8_2:16328687-16328706 Msa1237060:intron 50.0%
ACAAGGAAAAGAAGCCGGGA+TGG - chr8_2:16328833-16328852 Msa1237060:intron 50.0%
CAAGGAAAAGAAGCCGGGAT+GGG - chr8_2:16328834-16328853 Msa1237060:intron 50.0%
! GCACTGGTGGAAATAGGAGA+AGG + chr8_2:16329335-16329354 None:intergenic 50.0%
!! TGTGGAGCACTGGTGGAAAT+AGG + chr8_2:16329341-16329360 None:intergenic 50.0%
GGCAAAACTCCACAAGGTTG+TGG + chr8_2:16329359-16329378 None:intergenic 50.0%
TCAGGAGGCAAAACTCCACA+AGG + chr8_2:16329365-16329384 None:intergenic 50.0%
! GAGTTTTGCCTCCTGAAGCT+TGG - chr8_2:16329369-16329388 Msa1237060:intron 50.0%
AGTACCTGCATCCAAGCTTC+AGG + chr8_2:16329383-16329402 None:intergenic 50.0%
CTGCAAGAAGATCCAGGCTT+AGG - chr8_2:16329586-16329605 Msa1237060:intron 50.0%
AAGATCCAGGCTTAGGAAGC+AGG - chr8_2:16329593-16329612 Msa1237060:intron 50.0%
TCATACCTGCTTCCTAAGCC+TGG + chr8_2:16329601-16329620 None:intergenic 50.0%
GCTTATTCCCTAAGCTCACC+AGG - chr8_2:16329792-16329811 Msa1237060:intron 50.0%
TCGTGCCAATTCTTCAGCCT+CGG + chr8_2:16330046-16330065 None:intergenic 50.0%
! CTGGTGTCAGACACATGACA+TGG - chr8_2:16330317-16330336 Msa1237060:intron 50.0%
TCCTGATGATAGAGCTGCAG+AGG - chr8_2:16330533-16330552 Msa1237060:intron 50.0%
TCCTCTGCAGCTCTATCATC+AGG + chr8_2:16330537-16330556 None:intergenic 50.0%
CGCAGCTTTGCACCAGAATT+TGG + chr8_2:16330585-16330604 None:intergenic 50.0%
CTCATGGGAAACAGCGAGGA+TGG - chr8_2:16326718-16326737 Msa1237060:intron 55.0%
GACGTGAACATTCGACGGGT+TGG + chr8_2:16326884-16326903 None:intergenic 55.0%
TTCAACTCAGCTGCTGCTCC+TGG - chr8_2:16327702-16327721 Msa1237060:intron 55.0%
! TATGGGTGAGGAGCATGACC+AGG + chr8_2:16327723-16327742 None:intergenic 55.0%
GCTCCTCACCCATACATGTG+GGG - chr8_2:16327729-16327748 Msa1237060:intron 55.0%
GTGGTGGTCCCCACATGTAT+GGG + chr8_2:16327740-16327759 None:intergenic 55.0%
TGTGGTGGTCCCCACATGTA+TGG + chr8_2:16327741-16327760 None:intergenic 55.0%
ATACATGTGGGGACCACCAC+AGG - chr8_2:16327740-16327759 Msa1237060:intron 55.0%
! CTATGGAGCACTACCTGTGG+TGG + chr8_2:16327756-16327775 None:intergenic 55.0%
CACCACAGGTAGTGCTCCAT+AGG - chr8_2:16327754-16327773 Msa1237060:CDS 55.0%
GATACTGAGGGTTCCAGCGA+TGG - chr8_2:16328664-16328683 Msa1237060:intron 55.0%
GGAAGCGATGGCAACACTAC+AGG - chr8_2:16328685-16328704 Msa1237060:intron 55.0%
! TGGTTGTTGGTGTCCCATCC+CGG + chr8_2:16328850-16328869 None:intergenic 55.0%
GATGGGACACCAACAACCAC+TGG - chr8_2:16328851-16328870 Msa1237060:intron 55.0%
! CTGAAACGAGGTGCCAGTCT+TGG + chr8_2:16329062-16329081 None:intergenic 55.0%
TGACCACATCACTGGACCTG+AGG - chr8_2:16329306-16329325 Msa1237060:intron 55.0%
GTTCCTCAGGTCCAGTGATG+TGG + chr8_2:16329312-16329331 None:intergenic 55.0%
!! ACAAGGTTGTGGAGCACTGG+TGG + chr8_2:16329348-16329367 None:intergenic 55.0%
ACCAGTGCTCCACAACCTTG+TGG - chr8_2:16329347-16329366 Msa1237060:intron 55.0%
TCCACAAGGTTGTGGAGCAC+TGG + chr8_2:16329351-16329370 None:intergenic 55.0%
ACCTGCATCCAAGCTTCAGG+AGG + chr8_2:16329380-16329399 None:intergenic 55.0%
AGCGTGAGCTGAAACGTGAG+AGG - chr8_2:16329541-16329560 Msa1237060:CDS 55.0%
GTGAGCTGAAACGTGAGAGG+AGG - chr8_2:16329544-16329563 Msa1237060:CDS 55.0%
CATGCATCAGGGCCGTGTTT+GGG + chr8_2:16329947-16329966 None:intergenic 55.0%
ACATGCATCAGGGCCGTGTT+TGG + chr8_2:16329948-16329967 None:intergenic 55.0%
TATCTCCTCTGTACAGGCCG+AGG - chr8_2:16330026-16330045 Msa1237060:intron 55.0%
ACAGGCCGAGGCTGAAGAAT+TGG - chr8_2:16330038-16330057 Msa1237060:intron 55.0%
CAAAGCATGGACACGGACAC+TGG - chr8_2:16330214-16330233 Msa1237060:intron 55.0%
! GCTGCCACAGCATTAGCTCT+AGG + chr8_2:16330627-16330646 None:intergenic 55.0%
TCCTGATTGGGCTGCCATGC+AGG - chr8_2:16326906-16326925 Msa1237060:intron 60.0%
ACCTGCATGGCAGCCCAATC+AGG + chr8_2:16326910-16326929 None:intergenic 60.0%
GGTCCCCACATGTATGGGTG+AGG + chr8_2:16327735-16327754 None:intergenic 60.0%
GGTGCATATGGCGGCCCATA+TGG + chr8_2:16327905-16327924 None:intergenic 60.0%
TGACCTGGGGGGAACTATGC+AGG - chr8_2:16328355-16328374 Msa1237060:intron 60.0%
TGGGGGGAACTATGCAGGCT+GGG - chr8_2:16328360-16328379 Msa1237060:intron 60.0%
GGTTCCAGCGATGGAAGCGA+TGG - chr8_2:16328673-16328692 Msa1237060:intron 60.0%
GTTGCCATCGCTTCCATCGC+TGG + chr8_2:16328680-16328699 None:intergenic 60.0%
GCCTCCTGAAGCTTGGATGC+AGG - chr8_2:16329376-16329395 Msa1237060:intron 60.0%
TTCAGCCTCGGCCTGTACAG+AGG + chr8_2:16330034-16330053 None:intergenic 60.0%
CAGCCTGCATAGTTCCCCCC+AGG + chr8_2:16328361-16328380 None:intergenic 65.0%
CTGGGGGGAACTATGCAGGC+TGG - chr8_2:16328359-16328378 Msa1237060:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 16325429 16331028 16325429 ID=Msa1237060;Name=Msa1237060
chr8_2 mRNA 16325429 16331028 16325429 ID=Msa1237060-mRNA-1;Parent=Msa1237060;Name=Msa1237060-mRNA-1;_AED=0.17;_eAED=0.17;_QI=243|1|1|1|0.91|0.84|13|375|422
chr8_2 exon 16325429 16326040 16325429 ID=Msa1237060-mRNA-1:exon:6168;Parent=Msa1237060-mRNA-1
chr8_2 exon 16326290 16326415 16326290 ID=Msa1237060-mRNA-1:exon:6167;Parent=Msa1237060-mRNA-1
chr8_2 exon 16326843 16326920 16326843 ID=Msa1237060-mRNA-1:exon:6166;Parent=Msa1237060-mRNA-1
chr8_2 exon 16327060 16327280 16327060 ID=Msa1237060-mRNA-1:exon:6165;Parent=Msa1237060-mRNA-1
chr8_2 exon 16327585 16327633 16327585 ID=Msa1237060-mRNA-1:exon:6164;Parent=Msa1237060-mRNA-1
chr8_2 exon 16327749 16327797 16327749 ID=Msa1237060-mRNA-1:exon:6163;Parent=Msa1237060-mRNA-1
chr8_2 exon 16327920 16328080 16327920 ID=Msa1237060-mRNA-1:exon:6162;Parent=Msa1237060-mRNA-1
chr8_2 exon 16328182 16328223 16328182 ID=Msa1237060-mRNA-1:exon:6161;Parent=Msa1237060-mRNA-1
chr8_2 exon 16328484 16328567 16328484 ID=Msa1237060-mRNA-1:exon:6160;Parent=Msa1237060-mRNA-1
chr8_2 exon 16328696 16328791 16328696 ID=Msa1237060-mRNA-1:exon:6159;Parent=Msa1237060-mRNA-1
chr8_2 exon 16329530 16329592 16329530 ID=Msa1237060-mRNA-1:exon:6158;Parent=Msa1237060-mRNA-1
chr8_2 exon 16329674 16329789 16329674 ID=Msa1237060-mRNA-1:exon:6157;Parent=Msa1237060-mRNA-1
chr8_2 exon 16330839 16331028 16330839 ID=Msa1237060-mRNA-1:exon:6156;Parent=Msa1237060-mRNA-1
chr8_2 five_prime_UTR 16330839 16331028 16330839 ID=Msa1237060-mRNA-1:five_prime_utr;Parent=Msa1237060-mRNA-1
chr8_2 five_prime_UTR 16329737 16329789 16329737 ID=Msa1237060-mRNA-1:five_prime_utr;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16329674 16329736 16329674 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16329530 16329592 16329530 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16328696 16328791 16328696 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16328484 16328567 16328484 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16328182 16328223 16328182 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16327920 16328080 16327920 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16327749 16327797 16327749 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16327585 16327633 16327585 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16327060 16327280 16327060 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16326843 16326920 16326843 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16326290 16326415 16326290 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 CDS 16325804 16326040 16325804 ID=Msa1237060-mRNA-1:cds;Parent=Msa1237060-mRNA-1
chr8_2 three_prime_UTR 16325429 16325803 16325429 ID=Msa1237060-mRNA-1:three_prime_utr;Parent=Msa1237060-mRNA-1
Gene Sequence

>Msa1237060

ATGGGAAACAGCGAGGATGGAAAATCCGTTAAGATTGAAAGGCCTTCTTCACCTGTAACAACTGATCAGACCAATCAAGCCAACCCGTCGAATGTTCACGTCTATCCTGATTGGGCTGCCATGCAGGCATATTATGGGCAAAGAGTCAACATTCCACCATATTTCAACTCAGCTGCTGCTCCTGGTCATGCTCCTCACCCATACATGTGGGGACCACCACAGCCTATGATGCATCCATATGGGCCGCCATATGCACCACCATTTTATTCACATGGAGGGGTTTATACTCATCCTGCCATTGCCATTGGGTCGAATTCAAATGGTCAAGGAATTCCATCTTCGCCTGCTGCTGGGACACCTACAAGCATAGAGACACCAACCAAATCATCTGGAAACACTGATCAGGGTTTAATGAAAAAATTGAAAGGATTTGACGGGCTTGCAATGTCAATAGGCAATGGCAATGCTGAAAGTGCTGAGCGTGGAGCTGAAAACCAGCTATCACGGAGTGTGGATACTGAGGGTTCCAGCGATGGAAGCGATGGCAACACTACAGGGACCAATGGAACAAGGAAAAGAAGCCGGGATGGGACACCAACAACCACTGATGGAGAAGGGAAAGCTGAGATGCAAGACAGTCAAGTTTCCAAAGAGACTGCTGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAAAATGGTTGGACCTGTACTTTCTTCAGGTATGACCACATCACTGGACCTGAGGAACCCTTCTCCTATTTCCACCAGTGCTCCACAACCTTGTGGAGTTTTGCCTCCTGAAGCTTGGATGCAGAATGAGCGTGAGCTGAAACGTGAGAGGAGGAAACAGTCAAATCGTGAATCTGCAAGAAGATCCAGGCTTAGGAAGCAGGCCGAGGCTGAAGAATTGGCACGAAGAGTCGATGCATTGACTGCTGAGAATTTGGCGCTGAAATCGGAAATGAATGAATTGGCTGAAAATTCGGCGAAGCTGAAGATTGAAAATGCTACATTAAAGGAAAAGCTGGAAAACACTCAACTGGGACAAACAGAAGAGATAATTTTGAACGGCATTGACAAGAGGGCTACACCTGTAAGTACAGAAAACTTACTGTCAAGAGTTGATAATTCCAATCCTGATGATAGAGCTGCAGAGGAAGAAAATGGTTTCTGTGAGAGCAAACCAAATTCTGGTGCAAAGCTGCGTCAACTACTTGACACAAATCCTAGAGCTAATGCTGTGGCAGCTAGTTGA

Protein sequence

>Msa1237060

MGNSEDGKSVKIERPSSPVTTDQTNQANPSNVHVYPDWAAMQAYYGQRVNIPPYFNSAAAPGHAPHPYMWGPPQPMMHPYGPPYAPPFYSHGGVYTHPAIAIGSNSNGQGIPSSPAAGTPTSIETPTKSSGNTDQGLMKKLKGFDGLAMSIGNGNAESAERGAENQLSRSVDTEGSSDGSDGNTTGTNGTRKRSRDGTPTTTDGEGKAEMQDSQVSKETAASKKTVSVIATSAAEKMVGPVLSSGMTTSLDLRNPSPISTSAPQPCGVLPPEAWMQNERELKRERRKQSNRESARRSRLRKQAEAEELARRVDALTAENLALKSEMNELAENSAKLKIENATLKEKLENTQLGQTEEIILNGIDKRATPVSTENLLSRVDNSNPDDRAAEEENGFCESKPNSGAKLRQLLDTNPRANAVAAS*