AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1278150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278150 MtrunA17_Chr8g0347741 95.735 422 18 0 1 422 1 422 0.0 832
Msa1278150 MtrunA17_Chr7g0275321 70.629 429 113 7 1 421 1 424 0.0 588
Msa1278150 MtrunA17_Chr5g0410531 35.492 386 199 15 1 347 1 375 4.85e-47 166
Msa1278150 MtrunA17_Chr8g0369161 33.498 406 197 16 1 354 1 385 1.82e-41 151
Msa1278150 MtrunA17_Chr8g0373571 35.376 359 190 11 1 348 1 328 3.65e-39 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278150 AT2G46270.1 52.927 427 149 16 1 421 1 381 1.13e-118 351
Msa1278150 AT2G46270.3 52.927 427 149 16 1 421 1 381 1.13e-118 351
Msa1278150 AT2G46270.2 51.054 427 134 15 1 421 1 358 1.49e-108 324
Msa1278150 AT2G46270.4 51.054 427 134 15 1 421 1 358 1.49e-108 324
Msa1278150 AT4G01120.1 43.529 425 172 14 1 422 1 360 1.79e-83 260
Msa1278150 AT2G35530.1 35.897 351 166 17 36 347 42 372 9.67e-40 147
Msa1278150 AT4G36730.2 34.857 350 164 14 1 348 1 288 4.81e-36 135
Msa1278150 AT1G32150.1 36.104 385 185 18 1 347 1 362 1.68e-35 135
Msa1278150 AT4G36730.1 34.000 350 169 14 1 348 1 290 1.47e-34 130
Msa1278150 AT5G15830.1 40.566 106 58 3 272 375 67 169 5.79e-11 62.0

Find 132 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGTTAGCAGTAATTT+TGG 0.154999 8_3:+14191167 None:intergenic
CGCAGCTTTGCACCAGAATT+TGG 0.174496 8_3:+14191296 None:intergenic
GTTGTTGTTGTGTATCTTTC+AGG 0.177920 8_3:-14196254 Msa1278150:intron
TTATATCTTCAGGCATATTA+TGG 0.179056 8_3:-14194223 Msa1278150:intron
TGCATTGACTGCTGAGAATT+TGG 0.206598 8_3:-14191804 Msa1278150:CDS
TTTGTACATTGAAGAGAATT+AGG 0.276493 8_3:-14191012 Msa1278150:three_prime_UTR
GTTGGTGTCTCTATGCTTGT+AGG 0.281246 8_3:+14193491 None:intergenic
GAAAAGTAATAAATTAGTTT+TGG 0.291757 8_3:+14191099 None:intergenic
GTTGGACCTGTACTTTCTTC+AGG 0.296175 8_3:-14192597 Msa1278150:CDS
GATTGAAAATGCTACATTAA+AGG 0.302646 8_3:-14191732 Msa1278150:intron
GTTTGTTGATTATGTAGTTT+TGG 0.309343 8_3:-14191206 Msa1278150:three_prime_UTR
ACCCCTCCATGTGAATAAAA+TGG 0.310681 8_3:+14193951 None:intergenic
CTTCCTTAAATGAACGAAAA+TGG 0.313058 8_3:+14196375 None:intergenic
TTTGGAAGCAGCAGTCTCTT+TGG 0.315745 8_3:+14192662 None:intergenic
GTGCAGTTGAATAATTTCTA+AGG 0.328604 8_3:-14195210 Msa1278150:five_prime_UTR
ATTCGACGGGTTGGCTTGAT+TGG 0.332587 8_3:+14195005 None:intergenic
TGTGAGAGCAAACCAAATTC+TGG 0.337122 8_3:-14191308 Msa1278150:CDS
GAATGAATTGGCTGAAAATT+CGG 0.342200 8_3:-14191765 Msa1278150:CDS
ATCAGTGTTTCCAGATGATT+TGG 0.348179 8_3:+14193469 None:intergenic
ACTATGCTTACAGTTGTTAC+AGG 0.353749 8_3:+14195105 None:intergenic
TGTGGAGCACTGGTGGAAAT+AGG 0.361837 8_3:+14192540 None:intergenic
TCCTGATTGGGCTGCCATGC+AGG 0.378974 8_3:-14194971 Msa1278150:intron
AAAGCTGGAAAATACTCAAC+TGG 0.386010 8_3:-14191459 Msa1278150:CDS
TATATCTTCAGGCATATTAT+GGG 0.390466 8_3:-14194222 Msa1278150:intron
TGTGGTGGTCCCCACATGTA+TGG 0.390846 8_3:+14194139 None:intergenic
GGAAGTATTTGACTCAATCT+TGG 0.394614 8_3:-14195189 Msa1278150:five_prime_UTR
AGAGCTGCAGAGGAAGAAAA+TGG 0.398971 8_3:-14191335 Msa1278150:CDS
GCAGCAGCTGAGTTGAAATA+TGG 0.399898 8_3:+14194181 None:intergenic
TCCTCTGCAGCTCTATCATC+AGG 0.402104 8_3:+14191344 None:intergenic
CAGCCTATGATGCATCCATA+TGG 0.403301 8_3:-14193990 Msa1278150:CDS
TGAGAATTTGGCGCTGAAAT+CGG 0.404953 8_3:-14191792 Msa1278150:CDS
ACTTTAGAAAGGGTTGTGAT+TGG 0.406895 8_3:-14190974 Msa1278150:three_prime_UTR
ATTGGAATCGATATATGATT+TGG 0.411970 8_3:-14190956 Msa1278150:three_prime_UTR
ACAGGCCGAGGCTGAAGAAT+TGG 0.415387 8_3:-14191840 Msa1278150:intron
ACCTGCATGGCAGCCCAATC+AGG 0.417831 8_3:+14194970 None:intergenic
GGTGCATATGGCGGCCCATA+TGG 0.422943 8_3:+14193975 None:intergenic
GCCTCCTGAAGCTTGGATGC+AGG 0.426706 8_3:-14192502 Msa1278150:intron
GACGGGCTTGCAATGTCAAT+AGG 0.426918 8_3:-14193416 Msa1278150:CDS
CAACAAACCAGTGCAAATAC+TGG 0.433037 8_3:+14191221 None:intergenic
ATCATCTGGAAACACTGATC+AGG 0.436322 8_3:-14193465 Msa1278150:CDS
GTTGCCATCGCTTCCATCGC+TGG 0.439957 8_3:+14193200 None:intergenic
AGAAGGCCTTTCAATCTTAA+CGG 0.439968 8_3:+14195131 None:intergenic
AAGATCCAGGCTTAGGAAGC+AGG 0.440032 8_3:-14192285 Msa1278150:intron
GAGACACCAACCAAATCATC+TGG 0.448010 8_3:-14193479 Msa1278150:CDS
ATGTTCACGTCTATCCTGAT+TGG 0.449162 8_3:-14194984 Msa1278150:CDS
TTCAACTCAGCTGCTGCTCC+TGG 0.457412 8_3:-14194175 Msa1278150:CDS
TGTTCACGTCTATCCTGATT+GGG 0.463031 8_3:-14194983 Msa1278150:CDS
AAACTTACAGCAGGCGAAGA+TGG 0.468175 8_3:+14193616 None:intergenic
GGCCCATATGGATGCATCAT+AGG 0.470629 8_3:+14193987 None:intergenic
GAAATCGGAAATGAATGAAT+TGG 0.472002 8_3:-14191777 Msa1278150:CDS
TTCAGGTATGACCACATCAC+TGG 0.473232 8_3:-14192580 Msa1278150:CDS
AACCCACTTCGAAGAAAATA+CGG 0.474590 8_3:+14196305 None:intergenic
CAATCTTGGTGCTTATCTCA+TGG 0.479255 8_3:-14195175 Msa1278150:exon
GGCAAAACTCCACAAGGTTG+TGG 0.479999 8_3:+14192522 None:intergenic
GGAAGCGATGGCAACACTAC+AGG 0.486034 8_3:-14193192 Msa1278150:CDS
TCATACCTGCTTCCTAAGCC+TGG 0.486648 8_3:+14192280 None:intergenic
GAATAAAATGGTGGTGCATA+TGG 0.490133 8_3:+14193963 None:intergenic
AGTACCTGCATCCAAGCTTC+AGG 0.494330 8_3:+14192498 None:intergenic
CTGCAAGAAGATCCAGGCTT+AGG 0.497217 8_3:-14192292 Msa1278150:CDS
TGGTTGTTGGTGTCCCATCC+CGG 0.497265 8_3:+14193030 None:intergenic
TTTATCATACCAGTGGTTGT+TGG 0.502643 8_3:+14193017 None:intergenic
TCCACAAGGTTGTGGAGCAC+TGG 0.503689 8_3:+14192530 None:intergenic
ATATAGGGGTCGAATTCAAA+TGG 0.506926 8_3:-14193649 Msa1278150:intron
ACCTTATAGTATCTGAGAAA+AGG 0.515621 8_3:-14190903 Msa1278150:three_prime_UTR
GACGTGAACATTCGACGGGT+TGG 0.516747 8_3:+14194996 None:intergenic
TGGAACAAGGAAAAGAAGCC+GGG 0.517217 8_3:-14193048 Msa1278150:CDS
TCGTGCCAATTCTTCAGCCT+CGG 0.521120 8_3:+14191835 None:intergenic
TGCAGCTCTATCATCAGGAT+TGG 0.521412 8_3:+14191349 None:intergenic
ATTACTTGAATAGATGGAGA+AGG 0.522234 8_3:-14192714 Msa1278150:intron
ACAGTTGTTACAGGTGAAGA+AGG 0.523511 8_3:+14195114 None:intergenic
AGCCTATGATGCATCCATAT+GGG 0.523891 8_3:-14193989 Msa1278150:CDS
ATACATGTGGGGACCACCAC+AGG 0.528881 8_3:-14194137 Msa1278150:intron
TTACTTGAATAGATGGAGAA+GGG 0.530286 8_3:-14192713 Msa1278150:intron
CTCATGGGAAACAGCGAGGA+TGG 0.530777 8_3:-14195159 Msa1278150:CDS
AATCTTGGTGCTTATCTCAT+GGG 0.533227 8_3:-14195174 Msa1278150:exon
GAACAAACCTCCGTGATAGC+TGG 0.533419 8_3:+14193354 None:intergenic
ATGGAACAAGGAAAAGAAGC+CGG 0.533912 8_3:-14193049 Msa1278150:CDS
GAAAATCCGTTAAGATTGAA+AGG 0.538090 8_3:-14195137 Msa1278150:CDS
GTGAATCTGCAAGAAGATCC+AGG 0.538433 8_3:-14192298 Msa1278150:CDS
TTGAAAACCAGTATTTGCAC+TGG 0.541531 8_3:-14191228 Msa1278150:exon
GCTGCCACAGCATTAGCTCT+AGG 0.543381 8_3:+14191254 None:intergenic
TGCTCCTCACCCATACATGT+GGG 0.547429 8_3:-14194149 Msa1278150:CDS
GATACTGAGGGTTCCAGCGA+TGG 0.548274 8_3:-14193213 Msa1278150:CDS
CAAGGAAAAGAAGCCGGGAT+GGG 0.549908 8_3:-14193043 Msa1278150:CDS
AAATAGGCGAAGGGTTCCTC+AGG 0.557969 8_3:+14192556 None:intergenic
ACAAGGTTGTGGAGCACTGG+TGG 0.565799 8_3:+14192533 None:intergenic
ACCAGTGCTCCACAACCTTG+TGG 0.566848 8_3:-14192531 Msa1278150:CDS
TCATCTGGAAACACTGATCA+GGG 0.569446 8_3:-14193464 Msa1278150:CDS
GAAGCGATGGCAACACTACA+GGG 0.570248 8_3:-14193191 Msa1278150:CDS
GAGCTGAAAACCAGCTATCA+CGG 0.570429 8_3:-14193364 Msa1278150:CDS
TTTGAACGGCATTGACAAGA+GGG 0.571991 8_3:-14191417 Msa1278150:CDS
ACAAGGAAAAGAAGCCGGGA+TGG 0.577909 8_3:-14193044 Msa1278150:CDS
TATGGGTGAGGAGCATGACC+AGG 0.581544 8_3:+14194157 None:intergenic
GGTTCCAGCGATGGAAGCGA+TGG 0.582155 8_3:-14193204 Msa1278150:CDS
TTTCTGTTTAGATTTGATAG+GGG 0.582214 8_3:-14191051 Msa1278150:three_prime_UTR
TCCTGATGATAGAGCTGCAG+AGG 0.584828 8_3:-14191345 Msa1278150:CDS
GATGGGACACCAACAACCAC+TGG 0.585041 8_3:-14193026 Msa1278150:intron
GGTCCCCACATGTATGGGTG+AGG 0.585719 8_3:+14194145 None:intergenic
ATGCTCCTCACCCATACATG+TGG 0.594125 8_3:-14194150 Msa1278150:CDS
CAAAAGGTTGGTAACCTGCA+TGG 0.594851 8_3:+14194957 None:intergenic
GTGTTTCCAGATGATTTGGT+TGG 0.595146 8_3:+14193473 None:intergenic
GGGTCGAATTCAAATGGTCA+AGG 0.595761 8_3:-14193643 Msa1278150:CDS
GTTCCTCAGGTCCAGTGATG+TGG 0.595870 8_3:+14192569 None:intergenic
CTATGGAGCACTACCTGTGG+TGG 0.596426 8_3:+14194124 None:intergenic
CTTGCAATGTCAATAGGCAA+TGG 0.600080 8_3:-14193410 Msa1278150:CDS
GCACTGGTGGAAATAGGCGA+AGG 0.600927 8_3:+14192546 None:intergenic
AAACTTACAATGGCAACGGC+AGG 0.601671 8_3:+14193918 None:intergenic
GTGGTGGTCCCCACATGTAT+GGG 0.604143 8_3:+14194140 None:intergenic
GCAGCTGAGTTGAAATATGG+TGG 0.615300 8_3:+14194184 None:intergenic
CAATGCTATGCACAGACCAA+TGG 0.615349 8_3:-14193068 Msa1278150:intron
TATCAACAGTGTGGATACTG+AGG 0.618321 8_3:-14193226 Msa1278150:intron
GTCATACCTGAAGAAAGTAC+AGG 0.620947 8_3:+14192591 None:intergenic
GATAGACGTGAACATTCGAC+GGG 0.622023 8_3:+14194992 None:intergenic
ATGCACAGACCAATGGAACA+AGG 0.622555 8_3:-14193061 Msa1278150:intron
GGATAGACGTGAACATTCGA+CGG 0.628969 8_3:+14194991 None:intergenic
GTGAGCTGAAACGTGAGAGG+AGG 0.634017 8_3:-14192334 Msa1278150:CDS
AGCGTGAGCTGAAACGTGAG+AGG 0.634386 8_3:-14192337 Msa1278150:CDS
ACCTGCATCCAAGCTTCAGG+AGG 0.636392 8_3:+14192501 None:intergenic
ATGTAAACTTACAATGGCAA+CGG 0.640249 8_3:+14193914 None:intergenic
TGACCACATCACTGGACCTG+AGG 0.641825 8_3:-14192572 Msa1278150:CDS
AAGCTGGAAAATACTCAACT+GGG 0.649286 8_3:-14191458 Msa1278150:CDS
ATCAACAGTGTGGATACTGA+GGG 0.652441 8_3:-14193225 Msa1278150:intron
CACTGGTGGAAATAGGCGAA+GGG 0.655757 8_3:+14192547 None:intergenic
TCAGGAGGCAAAACTCCACA+AGG 0.685943 8_3:+14192516 None:intergenic
GCTCCTCACCCATACATGTG+GGG 0.694056 8_3:-14194148 Msa1278150:CDS
AAATCCTAGAGCTAATGCTG+TGG 0.699726 8_3:-14191258 Msa1278150:CDS
TAAAATGGTGGTGCATATGG+CGG 0.709796 8_3:+14193966 None:intergenic
TTATCTCATGGGAAACAGCG+AGG 0.711063 8_3:-14195163 Msa1278150:exon
AATGCTGAAAGTGCTGAGCG+TGG 0.716536 8_3:-14193386 Msa1278150:CDS
CCTCCATGTGAATAAAATGG+TGG 0.718697 8_3:+14193954 None:intergenic
AAGCGATGGCAACACTACAG+GGG 0.742066 8_3:-14193190 Msa1278150:intron
CTGAAAACCAGCTATCACGG+AGG 0.802626 8_3:-14193361 Msa1278150:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTGATTTTTGTTTT+AGG - chr8_3:14191132-14191151 Msa1278150:three_prime_UTR 10.0%
!! AAATAGATGAAAATTAATAA+AGG - chr8_3:14191408-14191427 Msa1278150:CDS 10.0%
!! AATAGATGAAAATTAATAAA+GGG - chr8_3:14191409-14191428 Msa1278150:CDS 10.0%
!!! ATTATAAAATGTTTTAACAT+GGG + chr8_3:14192218-14192237 None:intergenic 10.0%
!!! TTTTTTAATTAATGATCTTA+TGG + chr8_3:14192561-14192580 None:intergenic 10.0%
!! ACAAAAATAAACATAAATTT+CGG + chr8_3:14193437-14193456 None:intergenic 10.0%
!! AATTATATTGGTAAAATATA+GGG - chr8_3:14193628-14193647 Msa1278150:CDS 10.0%
!!! TTAATTACATTCAATTTTTT+TGG - chr8_3:14194499-14194518 Msa1278150:intron 10.0%
!! ACATAAAATTATTTATATCT+TGG - chr8_3:14195591-14195610 Msa1278150:intron 10.0%
!!! TTTTGTTCTTTTAATTTTTG+TGG - chr8_3:14191100-14191119 Msa1278150:three_prime_UTR 15.0%
!!! TAAACCAGATAATTTTTTTT+CGG + chr8_3:14191214-14191233 None:intergenic 15.0%
!!! AAAATTAATAAAGGGTATTT+TGG - chr8_3:14191417-14191436 Msa1278150:CDS 15.0%
!!! CATTATAAAATGTTTTAACA+TGG + chr8_3:14192219-14192238 None:intergenic 15.0%
!!! CAATTAAATCTTACTTTTTA+TGG + chr8_3:14192489-14192508 None:intergenic 15.0%
!!! ATGTAAATTTATTTTTACAC+TGG - chr8_3:14192522-14192541 Msa1278150:CDS 15.0%
!! TATGTACTTATGAATTATAT+TGG - chr8_3:14193616-14193635 Msa1278150:intron 15.0%
!! GAATTATATTGGTAAAATAT+AGG - chr8_3:14193627-14193646 Msa1278150:CDS 15.0%
!! ATTATATTGGTAAAATATAG+GGG - chr8_3:14193629-14193648 Msa1278150:CDS 15.0%
!!! GAAAAGTAATAAATTAGTTT+TGG + chr8_3:14196196-14196215 None:intergenic 15.0%
!!! AAACCAGATAATTTTTTTTC+GGG + chr8_3:14191213-14191232 None:intergenic 20.0%
!!! TATTTTTGCAAAAAAGTTGA+AGG - chr8_3:14191476-14191495 Msa1278150:intron 20.0%
!!! ATTTTTGCAAAAAAGTTGAA+GGG - chr8_3:14191477-14191496 Msa1278150:intron 20.0%
!! TTGTCATGTTAATTATGATA+AGG - chr8_3:14191505-14191524 Msa1278150:intron 20.0%
!!! AGTTATTGATTGACTAATTA+AGG - chr8_3:14191610-14191629 Msa1278150:intron 20.0%
!! AAACCAACTCTTTAAATTAA+AGG - chr8_3:14191811-14191830 Msa1278150:CDS 20.0%
!! CTATCTTATCAAATGATTAT+CGG - chr8_3:14191903-14191922 Msa1278150:intron 20.0%
!! ATTACTTTCTTGTTAATAAC+AGG - chr8_3:14192258-14192277 Msa1278150:intron 20.0%
!! TAAGATTTAATTGATATGCA+CGG - chr8_3:14192496-14192515 Msa1278150:intron 20.0%
!! GAAAAAGTTTAGTAGTTTAA+AGG - chr8_3:14192684-14192703 Msa1278150:CDS 20.0%
!! TTGATATTTATAAACCAATG+TGG - chr8_3:14192774-14192793 Msa1278150:intron 20.0%
!!! AAGTTTTCATGAAAATATGT+AGG + chr8_3:14192852-14192871 None:intergenic 20.0%
!! TAACAAAATAAATGATCCTA+TGG + chr8_3:14193188-14193207 None:intergenic 20.0%
!! AAAATAAACATAAATTTCGG+CGG + chr8_3:14193434-14193453 None:intergenic 20.0%
!!! GCACTTTTAATTTATGAATA+TGG - chr8_3:14193488-14193507 Msa1278150:CDS 20.0%
!! AGTATAAAAATAACCTTTGA+TGG + chr8_3:14193515-14193534 None:intergenic 20.0%
!! GGTTTAATGAAAAAATTGAA+AGG - chr8_3:14193849-14193868 Msa1278150:intron 20.0%
!! AAAAAATTGAAAGGATTTGA+CGG - chr8_3:14193858-14193877 Msa1278150:intron 20.0%
!! ATAAACAATAATAGTTGTTC+TGG - chr8_3:14194293-14194312 Msa1278150:intron 20.0%
!! TAATCAGAAATTTAAAAGCA+TGG + chr8_3:14194437-14194456 None:intergenic 20.0%
!! GTATTAATTACTTGAATAGA+TGG - chr8_3:14194572-14194591 Msa1278150:intron 20.0%
!! AAAGAAAATATTCTCACAAA+AGG - chr8_3:14195396-14195415 Msa1278150:intron 20.0%
!! CTATTTAGTCAAATTATTAC+CGG + chr8_3:14195676-14195695 None:intergenic 20.0%
!!! TTATTACTTTTCAGTTTCTT+AGG - chr8_3:14196204-14196223 Msa1278150:intron 20.0%
!!! TTTTCTGTTTAGATTTGATA+GGG - chr8_3:14196240-14196259 Msa1278150:intron 20.0%
!!! TTAGTTTTTAGACTTTAGAA+AGG - chr8_3:14196307-14196326 Msa1278150:five_prime_UTR 20.0%
!!! TAGTTTTTAGACTTTAGAAA+GGG - chr8_3:14196308-14196327 Msa1278150:five_prime_UTR 20.0%
!!! TTTGGTTTTGTATTAACTAT+TGG - chr8_3:14196354-14196373 Msa1278150:five_prime_UTR 20.0%
!! TTACCATTTTCGTTCATTTA+AGG - chr8_3:14190914-14190933 Msa1278150:three_prime_UTR 25.0%
!! ATTTTCGTTCATTTAAGGAA+GGG - chr8_3:14190919-14190938 Msa1278150:three_prime_UTR 25.0%
! AAAAAAAAAACAGCAATCCT+CGG + chr8_3:14190961-14190980 None:intergenic 25.0%
! TTAAAAGAACAAAACAACGT+TGG + chr8_3:14191094-14191113 None:intergenic 25.0%
!!! AACCAGATAATTTTTTTTCG+GGG + chr8_3:14191212-14191231 None:intergenic 25.0%
! TTGAAACACTGAAAATTGAA+GGG - chr8_3:14191254-14191273 Msa1278150:CDS 25.0%
! GTGTTAAAATCTTTGAACTT+AGG - chr8_3:14191313-14191332 Msa1278150:CDS 25.0%
!!! TAATAAAGGGTATTTTGGAT+CGG - chr8_3:14191422-14191441 Msa1278150:CDS 25.0%
!! AACATTAGATTTTCTTGCTA+AGG + chr8_3:14191666-14191685 None:intergenic 25.0%
!! ACACCTTTAATTTAAAGAGT+TGG + chr8_3:14191817-14191836 None:intergenic 25.0%
! ACAATAAAAAAGCAACAGAA+AGG + chr8_3:14192002-14192021 None:intergenic 25.0%
! ATAAAGGAAATGAAAGCAAA+AGG + chr8_3:14192354-14192373 None:intergenic 25.0%
!! CACCAAAAGTAGTTTTTAAT+GGG + chr8_3:14193035-14193054 None:intergenic 25.0%
!! TCACCAAAAGTAGTTTTTAA+TGG + chr8_3:14193036-14193055 None:intergenic 25.0%
! AAAGTTTCTGTTATATCTTC+AGG - chr8_3:14193059-14193078 Msa1278150:intron 25.0%
! TTATATCTTCAGGCATATTA+TGG - chr8_3:14193069-14193088 Msa1278150:intron 25.0%
! TATATCTTCAGGCATATTAT+GGG - chr8_3:14193070-14193089 Msa1278150:intron 25.0%
! AATAGACACAGAAATATCAA+TGG + chr8_3:14193213-14193232 None:intergenic 25.0%
! AAATAAACATAAATTTCGGC+GGG + chr8_3:14193433-14193452 None:intergenic 25.0%
! AAAAAATCAAAACTTACAGC+AGG + chr8_3:14193688-14193707 None:intergenic 25.0%
! TCATAATTTACAGTATTCAG+TGG + chr8_3:14193744-14193763 None:intergenic 25.0%
! CTGAATACTGTAAATTATGA+TGG - chr8_3:14193744-14193763 Msa1278150:intron 25.0%
! AAAAATTGAAAGGATTTGAC+GGG - chr8_3:14193859-14193878 Msa1278150:intron 25.0%
!! ATTTTCATGCTTCAATTTTC+CGG + chr8_3:14194198-14194217 None:intergenic 25.0%
! ATTATTGTTTATCATACCAG+TGG + chr8_3:14194285-14194304 None:intergenic 25.0%
!!! TCAATTTTTTTGGTGTCATA+TGG - chr8_3:14194509-14194528 Msa1278150:intron 25.0%
!!! TAAGATGTTAGTTCTACTAA+TGG - chr8_3:14194819-14194838 Msa1278150:intron 25.0%
! ACGTGACAATTAAAAAAACA+CGG + chr8_3:14195072-14195091 None:intergenic 25.0%
!! TTTTATGCATTTGTTTGGAT+TGG - chr8_3:14195094-14195113 Msa1278150:intron 25.0%
!!! TGAAAACAACTTCTAGAATA+TGG - chr8_3:14195237-14195256 Msa1278150:intron 25.0%
!! GTGAGAATATTTTCTTTCAA+AGG + chr8_3:14195393-14195412 None:intergenic 25.0%
! GATTGAAAATGCTACATTAA+AGG - chr8_3:14195560-14195579 Msa1278150:intron 25.0%
! TTTATATCTTGGCATTTCAT+AGG - chr8_3:14195602-14195621 Msa1278150:intron 25.0%
!!! AGTATAGATAATTTTGACTC+AGG - chr8_3:14195809-14195828 Msa1278150:intron 25.0%
!!! GTTTGTTGATTATGTAGTTT+TGG - chr8_3:14196086-14196105 Msa1278150:intron 25.0%
!! AAAACTGTTAGCAGTAATTT+TGG + chr8_3:14196128-14196147 None:intergenic 25.0%
!!! TAAATTAGTTTTGGCATTGA+TGG + chr8_3:14196187-14196206 None:intergenic 25.0%
!! GTTTTCTGTTTAGATTTGAT+AGG - chr8_3:14196239-14196258 Msa1278150:intron 25.0%
! TTTCTGTTTAGATTTGATAG+GGG - chr8_3:14196241-14196260 Msa1278150:intron 25.0%
! TTTGTACATTGAAGAGAATT+AGG - chr8_3:14196280-14196299 Msa1278150:five_prime_UTR 25.0%
! ATTGGAATCGATATATGATT+TGG - chr8_3:14196336-14196355 Msa1278150:five_prime_UTR 25.0%
CTTCCTTAAATGAACGAAAA+TGG + chr8_3:14190920-14190939 None:intergenic 30.0%
! CATTTTCGTTCATTTAAGGA+AGG - chr8_3:14190918-14190937 Msa1278150:three_prime_UTR 30.0%
ACAACAACAAAAAACGTGAA+CGG + chr8_3:14191020-14191039 None:intergenic 30.0%
GTTGAAACACTGAAAATTGA+AGG - chr8_3:14191253-14191272 Msa1278150:CDS 30.0%
TAACACATAACACAAGATCT+AGG + chr8_3:14191299-14191318 None:intergenic 30.0%
!!! AATAAAGGGTATTTTGGATC+GGG - chr8_3:14191423-14191442 Msa1278150:CDS 30.0%
AAGACATCTTTGACTCTATA+AGG - chr8_3:14191584-14191603 Msa1278150:intron 30.0%
GATTGACTAATTAAGGTCTT+TGG - chr8_3:14191617-14191636 Msa1278150:intron 30.0%
TTTCTCTATAGTAGCTTACT+AGG - chr8_3:14191698-14191717 Msa1278150:intron 30.0%
ATTCAACTGCACTAAACAAA+AGG + chr8_3:14192074-14192093 None:intergenic 30.0%
GTGCAGTTGAATAATTTCTA+AGG - chr8_3:14192082-14192101 Msa1278150:intron 30.0%
GAAAATCCGTTAAGATTGAA+AGG - chr8_3:14192155-14192174 Msa1278150:intron 30.0%
ATAACAAAAACGAAAACTCC+AGG + chr8_3:14192378-14192397 None:intergenic 30.0%
AGTTTAGTAGTTTAAAGGTG+TGG - chr8_3:14192689-14192708 Msa1278150:CDS 30.0%
AGAATGGAAATCAACAAAGT+CGG + chr8_3:14192715-14192734 None:intergenic 30.0%
AAAGAGTAAAGTAGCTAGAA+TGG + chr8_3:14192731-14192750 None:intergenic 30.0%
AATGGGGGAAATTTCAAATA+AGG + chr8_3:14192881-14192900 None:intergenic 30.0%
ATTTGAGAGCCAATCAAAAT+GGG + chr8_3:14192898-14192917 None:intergenic 30.0%
AATTTGAGAGCCAATCAAAA+TGG + chr8_3:14192899-14192918 None:intergenic 30.0%
!! TTTTGATTGGCTCTCAAATT+CGG - chr8_3:14192899-14192918 Msa1278150:intron 30.0%
! AACTGGATTTGATAATCTGT+GGG - chr8_3:14192940-14192959 Msa1278150:intron 30.0%
TTCAAAAGTGAAAGCAATCT+GGG + chr8_3:14193004-14193023 None:intergenic 30.0%
TTTCAAAAGTGAAAGCAATC+TGG + chr8_3:14193005-14193024 None:intergenic 30.0%
! TGCCCATTAAAAACTACTTT+TGG - chr8_3:14193030-14193049 Msa1278150:CDS 30.0%
ATGTAAACTTACAATGGCAA+CGG + chr8_3:14193381-14193400 None:intergenic 30.0%
AGTTTACATTCTCGCAATAT+TGG - chr8_3:14193392-14193411 Msa1278150:CDS 30.0%
TTATGAATATGGACCATCAA+AGG - chr8_3:14193499-14193518 Msa1278150:CDS 30.0%
AGATAAACATTCAACCACAA+AGG + chr8_3:14193597-14193616 None:intergenic 30.0%
ATTCAGTGGATCAAAAGATT+CGG + chr8_3:14193730-14193749 None:intergenic 30.0%
!! AAATTATGATGGATTTGACC+TGG - chr8_3:14193755-14193774 Msa1278150:intron 30.0%
!! AATTATGATGGATTTGACCT+GGG - chr8_3:14193756-14193775 Msa1278150:intron 30.0%
! TACGAGTTTGTTTCTCTATT+AGG - chr8_3:14194009-14194028 Msa1278150:intron 30.0%
ATGATGATATATCAACAGTG+TGG - chr8_3:14194057-14194076 Msa1278150:intron 30.0%
!! CTGTCTTATTTATAATGACC+CGG - chr8_3:14194176-14194195 Msa1278150:CDS 30.0%
! TTTTCATGCTTCAATTTTCC+GGG + chr8_3:14194197-14194216 None:intergenic 30.0%
CTGGATTACAAATATACTTC+TGG - chr8_3:14194312-14194331 Msa1278150:intron 30.0%
TCAATGAATTGTTGACACTA+TGG + chr8_3:14194357-14194376 None:intergenic 30.0%
ATCATGCATTAACAATTGGA+TGG + chr8_3:14194402-14194421 None:intergenic 30.0%
CCTTATCATGCATTAACAAT+TGG + chr8_3:14194406-14194425 None:intergenic 30.0%
CCAATTGTTAATGCATGATA+AGG - chr8_3:14194403-14194422 Msa1278150:intron 30.0%
GAATTATTTGATACCAAGAC+TGG - chr8_3:14194461-14194480 Msa1278150:intron 30.0%
!! ATGTAATTAACTCTGAAACG+AGG + chr8_3:14194489-14194508 None:intergenic 30.0%
CGTTATCTACTAGTAACTTA+AGG - chr8_3:14194550-14194569 Msa1278150:intron 30.0%
ATTACTTGAATAGATGGAGA+AGG - chr8_3:14194578-14194597 Msa1278150:intron 30.0%
TTACTTGAATAGATGGAGAA+GGG - chr8_3:14194579-14194598 Msa1278150:intron 30.0%
TGAATCACACAACAATAATG+CGG - chr8_3:14194877-14194896 Msa1278150:intron 30.0%
ACTGACACTAAAGTAATTCT+TGG - chr8_3:14194914-14194933 Msa1278150:intron 30.0%
!! CGTGTTTTTATGCATTTGTT+TGG - chr8_3:14195089-14195108 Msa1278150:intron 30.0%
TATAGAAACAGCTTATGTCA+TGG - chr8_3:14195167-14195186 Msa1278150:exon 30.0%
AATAAGCTGAAAAGAGCTTA+TGG + chr8_3:14195193-14195212 None:intergenic 30.0%
!! GTTGTTTTCATAAACTATCC+TGG + chr8_3:14195227-14195246 None:intergenic 30.0%
GAAATCGGAAATGAATGAAT+TGG - chr8_3:14195515-14195534 Msa1278150:intron 30.0%
GAATGAATTGGCTGAAAATT+CGG - chr8_3:14195527-14195546 Msa1278150:intron 30.0%
! AGTAAGTTTTCTGTACTTAC+AGG + chr8_3:14195906-14195925 None:intergenic 30.0%
! TACTGCTAACAGTTTTCAAA+TGG - chr8_3:14196132-14196151 Msa1278150:intron 30.0%
ACCTTATAGTATCTGAGAAA+AGG - chr8_3:14196389-14196408 Msa1278150:five_prime_UTR 30.0%
! ACCTTTTCTCAGATACTATA+AGG + chr8_3:14196393-14196412 None:intergenic 30.0%
! GTAATAATTTTGTTGCTCCG+AGG - chr8_3:14190941-14190960 Msa1278150:three_prime_UTR 35.0%
! TTCCGTATTTTCTTCGAAGT+GGG - chr8_3:14190985-14191004 Msa1278150:three_prime_UTR 35.0%
AACCCACTTCGAAGAAAATA+CGG + chr8_3:14190990-14191009 None:intergenic 35.0%
! GTTGTTGTTGTGTATCTTTC+AGG - chr8_3:14191038-14191057 Msa1278150:three_prime_UTR 35.0%
TGCCCCGAAAAAAAATTATC+TGG - chr8_3:14191207-14191226 Msa1278150:three_prime_UTR 35.0%
!! TATTGTACGTGACTTGTTTG+TGG - chr8_3:14191552-14191571 Msa1278150:intron 35.0%
!! ATTGTACGTGACTTGTTTGT+GGG - chr8_3:14191553-14191572 Msa1278150:intron 35.0%
!! GGAAGTATTTGACTCAATCT+TGG - chr8_3:14192103-14192122 Msa1278150:intron 35.0%
!! AATCTTGGTGCTTATCTCAT+GGG - chr8_3:14192118-14192137 Msa1278150:intron 35.0%
AGAAGGCCTTTCAATCTTAA+CGG + chr8_3:14192164-14192183 None:intergenic 35.0%
ACTATGCTTACAGTTGTTAC+AGG + chr8_3:14192190-14192209 None:intergenic 35.0%
AGGAAATGAAAGCAAAAGGT+TGG + chr8_3:14192350-14192369 None:intergenic 35.0%
GCTTTCATTTCCTTTATACC+TGG - chr8_3:14192357-14192376 Msa1278150:intron 35.0%
AACGAAAACTCCAGGTATAA+AGG + chr8_3:14192370-14192389 None:intergenic 35.0%
CTGAAGTGAAGATAGCTAAA+CGG + chr8_3:14192401-14192420 None:intergenic 35.0%
! CACAAATGATGGTTTGTGAT+TGG - chr8_3:14192613-14192632 Msa1278150:CDS 35.0%
AGATTACTGACATTGAAGCA+CGG + chr8_3:14192826-14192845 None:intergenic 35.0%
!! GAAATTTCCCCCATTTTGAT+TGG - chr8_3:14192886-14192905 Msa1278150:intron 35.0%
TTTGAGAGCCAATCAAAATG+GGG + chr8_3:14192897-14192916 None:intergenic 35.0%
! CAACTGGATTTGATAATCTG+TGG - chr8_3:14192939-14192958 Msa1278150:intron 35.0%
! ACTGGATTTGATAATCTGTG+GGG - chr8_3:14192941-14192960 Msa1278150:intron 35.0%
! ATTTGATAATCTGTGGGGAA+CGG - chr8_3:14192946-14192965 Msa1278150:intron 35.0%
! ATCTATGACGGGATTTACAT+CGG - chr8_3:14192977-14192996 Msa1278150:intron 35.0%
GGCTGAAAGAAACAATAAGT+TGG + chr8_3:14193287-14193306 None:intergenic 35.0%
! GAATAAAATGGTGGTGCATA+TGG + chr8_3:14193332-14193351 None:intergenic 35.0%
! CACCATTTTATTCACATGGA+GGG - chr8_3:14193339-14193358 Msa1278150:intron 35.0%
! ACCATTTTATTCACATGGAG+GGG - chr8_3:14193340-14193359 Msa1278150:intron 35.0%
GCGAGAATGTAAACTTACAA+TGG + chr8_3:14193387-14193406 None:intergenic 35.0%
CTTAATGTACCAAACCTTTG+TGG - chr8_3:14193580-14193599 Msa1278150:intron 35.0%
AACATTCAACCACAAAGGTT+TGG + chr8_3:14193592-14193611 None:intergenic 35.0%
ATATAGGGGTCGAATTCAAA+TGG - chr8_3:14193643-14193662 Msa1278150:CDS 35.0%
!! ATTATGATGGATTTGACCTG+GGG - chr8_3:14193757-14193776 Msa1278150:intron 35.0%
ATCAGTGTTTCCAGATGATT+TGG + chr8_3:14193826-14193845 None:intergenic 35.0%
! ATAGGAAGTGCAGTTAATTC+TGG + chr8_3:14193977-14193996 None:intergenic 35.0%
GTTTCTCTATTAGGTTCATG+TGG - chr8_3:14194018-14194037 Msa1278150:intron 35.0%
TTTATCATACCAGTGGTTGT+TGG + chr8_3:14194278-14194297 None:intergenic 35.0%
TTTAGTGTCAGTAAAAGACG+AGG + chr8_3:14194906-14194925 None:intergenic 35.0%
TAAACACATGTGAGACTGTT+CGG - chr8_3:14195137-14195156 Msa1278150:CDS 35.0%
ATTTCATAGGCTACAAAGCA+TGG - chr8_3:14195615-14195634 Msa1278150:intron 35.0%
!!! AATTTTGACTCAGGAAAAGC+TGG - chr8_3:14195818-14195837 Msa1278150:intron 35.0%
AAAGCTGGAAAATACTCAAC+TGG - chr8_3:14195833-14195852 Msa1278150:intron 35.0%
AAGCTGGAAAATACTCAACT+GGG - chr8_3:14195834-14195853 Msa1278150:intron 35.0%
TTGAAAACCAGTATTTGCAC+TGG - chr8_3:14196064-14196083 Msa1278150:intron 35.0%
! GCTAACAGTTTTCAAATGGA+TGG - chr8_3:14196136-14196155 Msa1278150:intron 35.0%
! GGATGGATCAGTTGAATTTT+AGG - chr8_3:14196153-14196172 Msa1278150:intron 35.0%
! ACTTTAGAAAGGGTTGTGAT+TGG - chr8_3:14196318-14196337 Msa1278150:five_prime_UTR 35.0%
! GTTCCGTATTTTCTTCGAAG+TGG - chr8_3:14190984-14191003 Msa1278150:three_prime_UTR 40.0%
!! TTGTACGTGACTTGTTTGTG+GGG - chr8_3:14191554-14191573 Msa1278150:intron 40.0%
ATGAAGCAACGACACAGATA+TGG + chr8_3:14191953-14191972 None:intergenic 40.0%
!! CAATCTTGGTGCTTATCTCA+TGG - chr8_3:14192117-14192136 Msa1278150:intron 40.0%
ACAGTTGTTACAGGTGAAGA+AGG + chr8_3:14192181-14192200 None:intergenic 40.0%
ATGTTCACGTCTATCCTGAT+TGG - chr8_3:14192308-14192327 Msa1278150:CDS 40.0%
TGTTCACGTCTATCCTGATT+GGG - chr8_3:14192309-14192328 Msa1278150:CDS 40.0%
! TCGTAAAAGCGCACAAATGA+TGG - chr8_3:14192602-14192621 Msa1278150:CDS 40.0%
TTGAGAGCCAATCAAAATGG+GGG + chr8_3:14192896-14192915 None:intergenic 40.0%
ATAGTGTCACAACTTGCAAC+TGG - chr8_3:14192923-14192942 Msa1278150:intron 40.0%
! ACGGACTATGGTATCTATGA+CGG - chr8_3:14192965-14192984 Msa1278150:intron 40.0%
ATTATTCATCCCTTCGAGCA+AGG + chr8_3:14193261-14193280 None:intergenic 40.0%
AGCCTATGATGCATCCATAT+GGG - chr8_3:14193303-14193322 Msa1278150:intron 40.0%
! TAAAATGGTGGTGCATATGG+CGG + chr8_3:14193329-14193348 None:intergenic 40.0%
! GCACCACCATTTTATTCACA+TGG - chr8_3:14193335-14193354 Msa1278150:intron 40.0%
CCTCCATGTGAATAAAATGG+TGG + chr8_3:14193341-14193360 None:intergenic 40.0%
! CCACCATTTTATTCACATGG+AGG - chr8_3:14193338-14193357 Msa1278150:intron 40.0%
ACCCCTCCATGTGAATAAAA+TGG + chr8_3:14193344-14193363 None:intergenic 40.0%
!! TTATGATGGATTTGACCTGG+GGG - chr8_3:14193758-14193777 Msa1278150:intron 40.0%
!! GTGTTTCCAGATGATTTGGT+TGG + chr8_3:14193822-14193841 None:intergenic 40.0%
ATCATCTGGAAACACTGATC+AGG - chr8_3:14193827-14193846 Msa1278150:intron 40.0%
TCATCTGGAAACACTGATCA+GGG - chr8_3:14193828-14193847 Msa1278150:intron 40.0%
CTTGCAATGTCAATAGGCAA+TGG - chr8_3:14193882-14193901 Msa1278150:intron 40.0%
AGAAACAAACTCGTACAGCA+AGG + chr8_3:14194004-14194023 None:intergenic 40.0%
TATCAACAGTGTGGATACTG+AGG - chr8_3:14194066-14194085 Msa1278150:intron 40.0%
ATCAACAGTGTGGATACTGA+GGG - chr8_3:14194067-14194086 Msa1278150:intron 40.0%
! CTACAGGGGTGAGAAATTTT+TGG - chr8_3:14194116-14194135 Msa1278150:intron 40.0%
! GCTTCTTTTCCTTGTTCCAT+TGG + chr8_3:14194243-14194262 None:intergenic 40.0%
ATGGAACAAGGAAAAGAAGC+CGG - chr8_3:14194243-14194262 Msa1278150:intron 40.0%
! GATAACTGACACCGTCTTTT+TGG + chr8_3:14194651-14194670 None:intergenic 40.0%
AACCAGTGCTGCAGAAAAAA+TGG - chr8_3:14194673-14194692 Msa1278150:intron 40.0%
!!! AACCATTTTTTCTGCAGCAC+TGG + chr8_3:14194678-14194697 None:intergenic 40.0%
AGTGCTGCAGAAAAAATGGT+TGG - chr8_3:14194677-14194696 Msa1278150:intron 40.0%
! GTCATACCTGAAGAAAGTAC+AGG + chr8_3:14194704-14194723 None:intergenic 40.0%
AAACTATCCTGGTGAGCTTA+TGG + chr8_3:14195216-14195235 None:intergenic 40.0%
!! TGCATTGACTGCTGAGAATT+TGG - chr8_3:14195488-14195507 Msa1278150:intron 40.0%
! TGAGAATTTGGCGCTGAAAT+CGG - chr8_3:14195500-14195519 Msa1278150:intron 40.0%
TACAAATGTCAATGTCGTGC+TGG - chr8_3:14195712-14195731 Msa1278150:intron 40.0%
!!! TTTTGAACGGCATTGACAAG+AGG - chr8_3:14195874-14195893 Msa1278150:intron 40.0%
!! TTTGAACGGCATTGACAAGA+GGG - chr8_3:14195875-14195894 Msa1278150:intron 40.0%
TGTGAGAGCAAACCAAATTC+TGG - chr8_3:14195984-14196003 Msa1278150:intron 40.0%
AAATCCTAGAGCTAATGCTG+TGG - chr8_3:14196034-14196053 Msa1278150:intron 40.0%
CAACAAACCAGTGCAAATAC+TGG + chr8_3:14196074-14196093 None:intergenic 40.0%
CACATGTCAGGCGTACATTT+GGG + chr8_3:14191841-14191860 None:intergenic 45.0%
ACACATGTCAGGCGTACATT+TGG + chr8_3:14191842-14191861 None:intergenic 45.0%
ATCAGCCATCAACACATGTC+AGG + chr8_3:14191853-14191872 None:intergenic 45.0%
TTATCTCATGGGAAACAGCG+AGG - chr8_3:14192129-14192148 Msa1278150:intron 45.0%
GATAGACGTGAACATTCGAC+GGG + chr8_3:14192303-14192322 None:intergenic 45.0%
GGATAGACGTGAACATTCGA+CGG + chr8_3:14192304-14192323 None:intergenic 45.0%
!! CAAAAGGTTGGTAACCTGCA+TGG + chr8_3:14192338-14192357 None:intergenic 45.0%
CGATGAAGACAACTCCACAT+TGG + chr8_3:14192791-14192810 None:intergenic 45.0%
CGGACTATGGTATCTATGAC+GGG - chr8_3:14192966-14192985 Msa1278150:intron 45.0%
! GCAGCTGAGTTGAAATATGG+TGG + chr8_3:14193111-14193130 None:intergenic 45.0%
! GCAGCAGCTGAGTTGAAATA+TGG + chr8_3:14193114-14193133 None:intergenic 45.0%
TTCGAGCAAGGATGTACACA+AGG + chr8_3:14193249-14193268 None:intergenic 45.0%
TTGTGTACATCCTTGCTCGA+AGG - chr8_3:14193248-14193267 Msa1278150:intron 45.0%
TGTGTACATCCTTGCTCGAA+GGG - chr8_3:14193249-14193268 Msa1278150:intron 45.0%
CAGCCTATGATGCATCCATA+TGG - chr8_3:14193302-14193321 Msa1278150:intron 45.0%
AAACTTACAATGGCAACGGC+AGG + chr8_3:14193377-14193396 None:intergenic 45.0%
GGGTCGAATTCAAATGGTCA+AGG - chr8_3:14193649-14193668 Msa1278150:intron 45.0%
AAACTTACAGCAGGCGAAGA+TGG + chr8_3:14193679-14193698 None:intergenic 45.0%
!! TATGATGGATTTGACCTGGG+GGG - chr8_3:14193759-14193778 Msa1278150:intron 45.0%
! GTTGGTGTCTCTATGCTTGT+AGG + chr8_3:14193804-14193823 None:intergenic 45.0%
GAGACACCAACCAAATCATC+TGG - chr8_3:14193813-14193832 Msa1278150:intron 45.0%
GAGCTGAAAACCAGCTATCA+CGG - chr8_3:14193928-14193947 Msa1278150:CDS 45.0%
! ATCACGGAGGTTTGTTCAGT+AGG - chr8_3:14193944-14193963 Msa1278150:CDS 45.0%
GACTACTAGTGTACGCAACT+GGG + chr8_3:14194157-14194176 None:intergenic 45.0%
AGACTACTAGTGTACGCAAC+TGG + chr8_3:14194158-14194177 None:intergenic 45.0%
! CATTGGTCTGTGCATAGCAT+TGG + chr8_3:14194226-14194245 None:intergenic 45.0%
CAATGCTATGCACAGACCAA+TGG - chr8_3:14194224-14194243 Msa1278150:intron 45.0%
ATGCACAGACCAATGGAACA+AGG - chr8_3:14194231-14194250 Msa1278150:intron 45.0%
TGGAACAAGGAAAAGAAGCC+GGG - chr8_3:14194244-14194263 Msa1278150:intron 45.0%
TTTGGAAGCAGCAGTCTCTT+TGG + chr8_3:14194633-14194652 None:intergenic 45.0%
! GACTGCTGCTTCCAAAAAGA+CGG - chr8_3:14194637-14194656 Msa1278150:intron 45.0%
GTTGGACCTGTACTTTCTTC+AGG - chr8_3:14194695-14194714 Msa1278150:intron 45.0%
TTCAGGTATGACCACATCAC+TGG - chr8_3:14194712-14194731 Msa1278150:intron 45.0%
TTCAGCTCACGCTCATTCTA+AGG + chr8_3:14194948-14194967 None:intergenic 45.0%
GTGAATCTGCAAGAAGATCC+AGG - chr8_3:14194994-14195013 Msa1278150:CDS 45.0%
GCTTATTCCATAAGCTCACC+AGG - chr8_3:14195206-14195225 Msa1278150:five_prime_UTR 45.0%
GGCTACATGTACATGCATCA+GGG + chr8_3:14195372-14195391 None:intergenic 45.0%
AGGCTACATGTACATGCATC+AGG + chr8_3:14195373-14195392 None:intergenic 45.0%
CGTTCTTATCTCCTCTGTAC+AGG - chr8_3:14195434-14195453 Msa1278150:intron 45.0%
TAGGCTACAAAGCATGGACA+CGG - chr8_3:14195621-14195640 Msa1278150:intron 45.0%
CGACATTGACACATTGACAC+CGG - chr8_3:14195654-14195673 Msa1278150:intron 45.0%
GCAGCGATGCTTCATATTGA+AGG + chr8_3:14195759-14195778 None:intergenic 45.0%
TGCAGCTCTATCATCAGGAT+TGG + chr8_3:14195946-14195965 None:intergenic 45.0%
AGAGCTGCAGAGGAAGAAAA+TGG - chr8_3:14195957-14195976 Msa1278150:intron 45.0%
GTACGCCTGACATGTGTTGA+TGG - chr8_3:14191845-14191864 Msa1278150:intron 50.0%
!! ATTCGACGGGTTGGCTTGAT+TGG + chr8_3:14192290-14192309 None:intergenic 50.0%
!! AATCTGTGGGGAACGGACTA+TGG - chr8_3:14192953-14192972 Msa1278150:intron 50.0%
ATGCTCCTCACCCATACATG+TGG - chr8_3:14193142-14193161 Msa1278150:intron 50.0%
TGCTCCTCACCCATACATGT+GGG - chr8_3:14193143-14193162 Msa1278150:intron 50.0%
! ATCCTATGGAGCACTACCTG+TGG + chr8_3:14193174-14193193 None:intergenic 50.0%
GCAAGGATGTACACAAGGAC+AGG + chr8_3:14193244-14193263 None:intergenic 50.0%
GGCCCATATGGATGCATCAT+AGG + chr8_3:14193308-14193327 None:intergenic 50.0%
! GACGGGCTTGCAATGTCAAT+AGG - chr8_3:14193876-14193895 Msa1278150:intron 50.0%
!! AATGCTGAAAGTGCTGAGCG+TGG - chr8_3:14193906-14193925 Msa1278150:intron 50.0%
CTGAAAACCAGCTATCACGG+AGG - chr8_3:14193931-14193950 Msa1278150:CDS 50.0%
GAACAAACCTCCGTGATAGC+TGG + chr8_3:14193941-14193960 None:intergenic 50.0%
CTCGTACAGCAAGGAGACAT+AGG + chr8_3:14193995-14194014 None:intergenic 50.0%
GAAGCGATGGCAACACTACA+GGG - chr8_3:14194101-14194120 Msa1278150:intron 50.0%
AAGCGATGGCAACACTACAG+GGG - chr8_3:14194102-14194121 Msa1278150:intron 50.0%
ACAAGGAAAAGAAGCCGGGA+TGG - chr8_3:14194248-14194267 Msa1278150:intron 50.0%
CAAGGAAAAGAAGCCGGGAT+GGG - chr8_3:14194249-14194268 Msa1278150:intron 50.0%
AAATAGGCGAAGGGTTCCTC+AGG + chr8_3:14194739-14194758 None:intergenic 50.0%
CACTGGTGGAAATAGGCGAA+GGG + chr8_3:14194748-14194767 None:intergenic 50.0%
!! TGTGGAGCACTGGTGGAAAT+AGG + chr8_3:14194755-14194774 None:intergenic 50.0%
GGCAAAACTCCACAAGGTTG+TGG + chr8_3:14194773-14194792 None:intergenic 50.0%
TCAGGAGGCAAAACTCCACA+AGG + chr8_3:14194779-14194798 None:intergenic 50.0%
! GAGTTTTGCCTCCTGAAGCT+TGG - chr8_3:14194783-14194802 Msa1278150:intron 50.0%
AGTACCTGCATCCAAGCTTC+AGG + chr8_3:14194797-14194816 None:intergenic 50.0%
CTGCAAGAAGATCCAGGCTT+AGG - chr8_3:14195000-14195019 Msa1278150:CDS 50.0%
AAGATCCAGGCTTAGGAAGC+AGG - chr8_3:14195007-14195026 Msa1278150:CDS 50.0%
TCATACCTGCTTCCTAAGCC+TGG + chr8_3:14195015-14195034 None:intergenic 50.0%
CATGCATCAGGGACGTGTTT+GGG + chr8_3:14195361-14195380 None:intergenic 50.0%
ACATGCATCAGGGACGTGTT+TGG + chr8_3:14195362-14195381 None:intergenic 50.0%
TCGTGCCAATTCTTCAGCCT+CGG + chr8_3:14195460-14195479 None:intergenic 50.0%
! CTGGTGTCAGACACATGACA+TGG - chr8_3:14195731-14195750 Msa1278150:intron 50.0%
TCCTGATGATAGAGCTGCAG+AGG - chr8_3:14195947-14195966 Msa1278150:intron 50.0%
TCCTCTGCAGCTCTATCATC+AGG + chr8_3:14195951-14195970 None:intergenic 50.0%
CGCAGCTTTGCACCAGAATT+TGG + chr8_3:14195999-14196018 None:intergenic 50.0%
CTCATGGGAAACAGCGAGGA+TGG - chr8_3:14192133-14192152 Msa1278150:intron 55.0%
GACGTGAACATTCGACGGGT+TGG + chr8_3:14192299-14192318 None:intergenic 55.0%
TTCAACTCAGCTGCTGCTCC+TGG - chr8_3:14193117-14193136 Msa1278150:intron 55.0%
! TATGGGTGAGGAGCATGACC+AGG + chr8_3:14193138-14193157 None:intergenic 55.0%
GCTCCTCACCCATACATGTG+GGG - chr8_3:14193144-14193163 Msa1278150:intron 55.0%
GTGGTGGTCCCCACATGTAT+GGG + chr8_3:14193155-14193174 None:intergenic 55.0%
TGTGGTGGTCCCCACATGTA+TGG + chr8_3:14193156-14193175 None:intergenic 55.0%
ATACATGTGGGGACCACCAC+AGG - chr8_3:14193155-14193174 Msa1278150:intron 55.0%
! CTATGGAGCACTACCTGTGG+TGG + chr8_3:14193171-14193190 None:intergenic 55.0%
CACCACAGGTAGTGCTCCAT+AGG - chr8_3:14193169-14193188 Msa1278150:intron 55.0%
GATACTGAGGGTTCCAGCGA+TGG - chr8_3:14194079-14194098 Msa1278150:intron 55.0%
GGAAGCGATGGCAACACTAC+AGG - chr8_3:14194100-14194119 Msa1278150:intron 55.0%
! TGGTTGTTGGTGTCCCATCC+CGG + chr8_3:14194265-14194284 None:intergenic 55.0%
GATGGGACACCAACAACCAC+TGG - chr8_3:14194266-14194285 Msa1278150:intron 55.0%
! CTGAAACGAGGTGCCAGTCT+TGG + chr8_3:14194477-14194496 None:intergenic 55.0%
TGACCACATCACTGGACCTG+AGG - chr8_3:14194720-14194739 Msa1278150:intron 55.0%
GTTCCTCAGGTCCAGTGATG+TGG + chr8_3:14194726-14194745 None:intergenic 55.0%
! GCACTGGTGGAAATAGGCGA+AGG + chr8_3:14194749-14194768 None:intergenic 55.0%
!! ACAAGGTTGTGGAGCACTGG+TGG + chr8_3:14194762-14194781 None:intergenic 55.0%
ACCAGTGCTCCACAACCTTG+TGG - chr8_3:14194761-14194780 Msa1278150:intron 55.0%
TCCACAAGGTTGTGGAGCAC+TGG + chr8_3:14194765-14194784 None:intergenic 55.0%
ACCTGCATCCAAGCTTCAGG+AGG + chr8_3:14194794-14194813 None:intergenic 55.0%
AGCGTGAGCTGAAACGTGAG+AGG - chr8_3:14194955-14194974 Msa1278150:intron 55.0%
GTGAGCTGAAACGTGAGAGG+AGG - chr8_3:14194958-14194977 Msa1278150:intron 55.0%
TATCTCCTCTGTACAGGCCG+AGG - chr8_3:14195440-14195459 Msa1278150:intron 55.0%
ACAGGCCGAGGCTGAAGAAT+TGG - chr8_3:14195452-14195471 Msa1278150:intron 55.0%
CAAAGCATGGACACGGACAC+TGG - chr8_3:14195628-14195647 Msa1278150:intron 55.0%
! GCTGCCACAGCATTAGCTCT+AGG + chr8_3:14196041-14196060 None:intergenic 55.0%
TCCTGATTGGGCTGCCATGC+AGG - chr8_3:14192321-14192340 Msa1278150:CDS 60.0%
ACCTGCATGGCAGCCCAATC+AGG + chr8_3:14192325-14192344 None:intergenic 60.0%
GGTCCCCACATGTATGGGTG+AGG + chr8_3:14193150-14193169 None:intergenic 60.0%
GGTGCATATGGCGGCCCATA+TGG + chr8_3:14193320-14193339 None:intergenic 60.0%
TGACCTGGGGGGAACTATGC+AGG - chr8_3:14193770-14193789 Msa1278150:intron 60.0%
TGGGGGGAACTATGCAGGCT+GGG - chr8_3:14193775-14193794 Msa1278150:intron 60.0%
GGTTCCAGCGATGGAAGCGA+TGG - chr8_3:14194088-14194107 Msa1278150:intron 60.0%
GTTGCCATCGCTTCCATCGC+TGG + chr8_3:14194095-14194114 None:intergenic 60.0%
GCCTCCTGAAGCTTGGATGC+AGG - chr8_3:14194790-14194809 Msa1278150:intron 60.0%
TTCAGCCTCGGCCTGTACAG+AGG + chr8_3:14195448-14195467 None:intergenic 60.0%
CAGCCTGCATAGTTCCCCCC+AGG + chr8_3:14193776-14193795 None:intergenic 65.0%
CTGGGGGGAACTATGCAGGC+TGG - chr8_3:14193774-14193793 Msa1278150:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 14190871 14196443 14190871 ID=Msa1278150;Name=Msa1278150
chr8_3 mRNA 14190871 14196443 14190871 ID=Msa1278150-mRNA-1;Parent=Msa1278150;Name=Msa1278150-mRNA-1;_AED=0.16;_eAED=0.16;_QI=242|1|1|1|0.91|0.84|13|376|422
chr8_3 exon 14190871 14191483 14190871 ID=Msa1278150-mRNA-1:exon:5604;Parent=Msa1278150-mRNA-1
chr8_3 exon 14191733 14191858 14191733 ID=Msa1278150-mRNA-1:exon:5603;Parent=Msa1278150-mRNA-1
chr8_3 exon 14192286 14192363 14192286 ID=Msa1278150-mRNA-1:exon:5602;Parent=Msa1278150-mRNA-1
chr8_3 exon 14192503 14192723 14192503 ID=Msa1278150-mRNA-1:exon:5601;Parent=Msa1278150-mRNA-1
chr8_3 exon 14193027 14193075 14193027 ID=Msa1278150-mRNA-1:exon:5600;Parent=Msa1278150-mRNA-1
chr8_3 exon 14193191 14193239 14193191 ID=Msa1278150-mRNA-1:exon:5599;Parent=Msa1278150-mRNA-1
chr8_3 exon 14193362 14193522 14193362 ID=Msa1278150-mRNA-1:exon:5598;Parent=Msa1278150-mRNA-1
chr8_3 exon 14193624 14193665 14193624 ID=Msa1278150-mRNA-1:exon:5597;Parent=Msa1278150-mRNA-1
chr8_3 exon 14193926 14194009 14193926 ID=Msa1278150-mRNA-1:exon:5596;Parent=Msa1278150-mRNA-1
chr8_3 exon 14194138 14194233 14194138 ID=Msa1278150-mRNA-1:exon:5595;Parent=Msa1278150-mRNA-1
chr8_3 exon 14194972 14195034 14194972 ID=Msa1278150-mRNA-1:exon:5594;Parent=Msa1278150-mRNA-1
chr8_3 exon 14195116 14195231 14195116 ID=Msa1278150-mRNA-1:exon:5593;Parent=Msa1278150-mRNA-1
chr8_3 exon 14196255 14196443 14196255 ID=Msa1278150-mRNA-1:exon:5592;Parent=Msa1278150-mRNA-1
chr8_3 five_prime_UTR 14196255 14196443 14196255 ID=Msa1278150-mRNA-1:five_prime_utr;Parent=Msa1278150-mRNA-1
chr8_3 five_prime_UTR 14195179 14195231 14195179 ID=Msa1278150-mRNA-1:five_prime_utr;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14195116 14195178 14195116 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14194972 14195034 14194972 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14194138 14194233 14194138 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14193926 14194009 14193926 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14193624 14193665 14193624 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14193362 14193522 14193362 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14193191 14193239 14193191 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14193027 14193075 14193027 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14192503 14192723 14192503 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14192286 14192363 14192286 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14191733 14191858 14191733 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 CDS 14191247 14191483 14191247 ID=Msa1278150-mRNA-1:cds;Parent=Msa1278150-mRNA-1
chr8_3 three_prime_UTR 14190871 14191246 14190871 ID=Msa1278150-mRNA-1:three_prime_utr;Parent=Msa1278150-mRNA-1
Gene Sequence

>Msa1278150

ATGGGAAACAGCGAGGATGGAAAATCCGTTAAGATTGAAAGGCCTTCTTCACCTGTAACAACTGATCAGACCAATCAAGCCAACCCGTCGAATGTTCACGTCTATCCTGATTGGGCTGCCATGCAGGCATATTATGGGCAAAGAGTCAACATTCCACCATATTTCAACTCAGCTGCTGCTCCTGGTCATGCTCCTCACCCATACATGTGGGGACCACCACAGCCTATGATGCATCCATATGGGCCGCCATATGCACCACCATTTTATTCACATGGAGGGGTTTATACTCATCCTGCCGTTGCCATTGGGTCGAATTCAAATGGTCAAGGAATTCCATCTTCGCCTGCTGCTGGGACACCTACAAGCATAGAGACACCAACCAAATCATCTGGAAACACTGATCAGGGTTTAATGAAAAAATTGAAAGGATTTGACGGGCTTGCAATGTCAATAGGCAATGGCAATGCTGAAAGTGCTGAGCGTGGAGCTGAAAACCAGCTATCACGGAGTGTGGATACTGAGGGTTCCAGCGATGGAAGCGATGGCAACACTACAGGGACCAATGGAACAAGGAAAAGAAGCCGGGATGGGACACCAACAACCACTGATGGAGAAGGGAAAGCTGAGATGCAAGACAGTCAAGTTTCCAAAGAGACTGCTGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAAAATGGTTGGACCTGTACTTTCTTCAGGTATGACCACATCACTGGACCTGAGGAACCCTTCGCCTATTTCCACCAGTGCTCCACAACCTTGTGGAGTTTTGCCTCCTGAAGCTTGGATGCAGAATGAGCGTGAGCTGAAACGTGAGAGGAGGAAACAGTCAAATCGTGAATCTGCAAGAAGATCCAGGCTTAGGAAGCAGGCCGAGGCTGAAGAATTGGCACGAAGAGTCGATGCATTGACTGCTGAGAATTTGGCGCTGAAATCGGAAATGAATGAATTGGCTGAAAATTCGGCGAAGCTGAAGATTGAAAATGCTACATTAAAGGAAAAGCTGGAAAATACTCAACTGGGACAAACAGAAGAGATAATTTTGAACGGCATTGACAAGAGGGCTACACCTGTAAGTACAGAAAACTTACTGTCAAGAGTTGATAATTCCAATCCTGATGATAGAGCTGCAGAGGAAGAAAATGGTTTCTGTGAGAGCAAACCAAATTCTGGTGCAAAGCTGCGTCAACTACTTGACACAAATCCTAGAGCTAATGCTGTGGCAGCTAGTTGA

Protein sequence

>Msa1278150

MGNSEDGKSVKIERPSSPVTTDQTNQANPSNVHVYPDWAAMQAYYGQRVNIPPYFNSAAAPGHAPHPYMWGPPQPMMHPYGPPYAPPFYSHGGVYTHPAVAIGSNSNGQGIPSSPAAGTPTSIETPTKSSGNTDQGLMKKLKGFDGLAMSIGNGNAESAERGAENQLSRSVDTEGSSDGSDGNTTGTNGTRKRSRDGTPTTTDGEGKAEMQDSQVSKETAASKKTVSVIATSAAEKMVGPVLSSGMTTSLDLRNPSPISTSAPQPCGVLPPEAWMQNERELKRERRKQSNRESARRSRLRKQAEAEELARRVDALTAENLALKSEMNELAENSAKLKIENATLKEKLENTQLGQTEEIILNGIDKRATPVSTENLLSRVDNSNPDDRAAEEENGFCESKPNSGAKLRQLLDTNPRANAVAAS*