AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1237470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237470 MtrunA17_Chr8g0348461 94.318 528 24 1 1 528 1 522 0.0 1035
Msa1237470 MtrunA17_Chr8g0350811 69.002 471 107 6 86 528 448 907 0.0 648
Msa1237470 MtrunA17_Chr8g0350811 54.943 435 138 11 19 407 17 439 1.74e-134 412
Msa1237470 MtrunA17_Chr6g0474101 53.416 322 146 3 200 521 113 430 2.40e-127 379
Msa1237470 MtrunA17_Chr1g0154301 27.119 295 188 11 229 517 104 377 2.46e-18 87.8
Msa1237470 MtrunA17_Chr4g0034121 25.566 309 198 12 220 517 121 408 8.67e-15 77.0
Msa1237470 MtrunA17_Chr5g0440471 30.732 205 123 8 284 478 204 399 5.86e-14 74.7
Msa1237470 MtrunA17_Chr5g0403011 24.138 232 143 6 317 517 136 365 7.93e-14 73.6
Msa1237470 MtrunA17_Chr1g0185501 26.437 261 133 9 227 432 59 315 1.34e-12 68.9
Msa1237470 MtrunA17_Chr4g0067151 25.455 220 145 7 228 433 111 325 1.80e-12 68.6
Msa1237470 MtrunA17_Chr2g0295791 24.576 236 160 9 290 518 184 408 4.45e-12 68.2
Msa1237470 MtrunA17_Chr8g0381281 26.906 223 127 9 236 429 211 426 6.04e-12 67.8
Msa1237470 MtrunA17_Chr3g0140101 21.222 311 201 11 227 521 78 360 4.43e-11 65.1
Msa1237470 MtrunA17_Chr4g0059501 26.364 220 132 9 236 429 179 394 4.89e-11 64.7
Msa1237470 MtrunA17_Chr5g0414581 25.714 245 131 9 235 429 198 441 7.30e-11 64.3
Msa1237470 MtrunA17_Chr2g0322171 25.105 239 158 7 221 441 37 272 9.42e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237470 AT5G51980.1 47.989 373 175 5 156 521 71 431 2.01e-120 361
Msa1237470 AT5G51980.2 47.989 373 175 5 156 521 71 431 2.01e-120 361
Msa1237470 AT4G25440.2 51.829 328 154 3 200 527 107 430 4.26e-120 360
Msa1237470 AT4G25440.3 51.829 328 154 3 200 527 107 430 4.26e-120 360
Msa1237470 AT4G25440.1 51.829 328 154 3 200 527 107 430 4.26e-120 360
Msa1237470 AT5G49200.1 50.467 321 152 5 200 516 94 411 2.60e-106 324
Msa1237470 AT5G40880.2 48.182 330 167 3 196 524 117 443 3.61e-103 317
Msa1237470 AT5G40880.1 48.182 330 167 3 196 524 146 472 6.49e-103 317
Msa1237470 AT1G49450.1 25.862 290 171 11 265 517 121 403 1.07e-17 86.3
Msa1237470 AT3G50390.1 23.358 274 168 9 281 517 101 369 1.20e-17 86.3
Msa1237470 AT3G18950.1 23.958 288 179 9 265 517 125 407 1.92e-16 82.4
Msa1237470 AT1G47610.1 25.161 310 190 11 223 517 10 292 2.59e-15 77.8
Msa1237470 AT2G26490.1 29.954 217 124 9 236 429 205 416 2.95e-13 72.4
Msa1237470 AT2G26490.1 23.077 338 226 12 190 517 51 364 7.34e-13 71.2
Msa1237470 AT4G15900.1 26.271 236 156 8 290 518 190 414 4.71e-13 72.0
Msa1237470 AT3G49660.1 25.688 218 145 6 228 433 104 316 1.14e-12 69.3
Msa1237470 AT3G16650.1 26.383 235 156 9 290 518 184 407 2.65e-12 69.3
Msa1237470 AT4G02730.1 27.642 246 155 10 204 432 93 332 7.88e-12 67.0
Msa1237470 AT1G24130.1 25.571 219 137 7 236 429 191 408 1.59e-11 66.6
Msa1237470 AT2G22040.1 23.830 235 145 8 230 442 77 299 1.81e-11 65.9

Find 192 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCGTTACTTCAAATTT+AGG 0.088667 8_2:-16879388 Msa1237470:five_prime_UTR
AAAGAGCAGTTTATATTAAA+TGG 0.149034 8_2:-16876202 Msa1237470:three_prime_UTR
TTCATTGTAAACTTTATAAT+TGG 0.150779 8_2:-16879246 Msa1237470:five_prime_UTR
GAGGATACAGTGGCTGATTT+AGG 0.170115 8_2:-16879188 Msa1237470:five_prime_UTR
ACTTATTAGGGTGATGATTT+GGG 0.189118 8_2:-16879337 Msa1237470:five_prime_UTR
TGAATCATCCAATTCTGATA+TGG 0.210558 8_2:-16878964 Msa1237470:five_prime_UTR
ACCCTAAAATTGATCGAAAT+TGG 0.212704 8_2:+16879473 None:intergenic
AAACAATAGAAATACCTTAA+TGG 0.219415 8_2:+16877176 None:intergenic
TACTTATTAGGGTGATGATT+TGG 0.226749 8_2:-16879338 Msa1237470:five_prime_UTR
TGAATCGTCCAATTCTGATA+TGG 0.239835 8_2:-16879010 Msa1237470:five_prime_UTR
GAATAGGGCATTATAAAGTT+TGG 0.255409 8_2:-16878879 Msa1237470:five_prime_UTR
AGTGATGCAACCAGTTTAAA+AGG 0.256880 8_2:+16877276 None:intergenic
GTTTCGTTACTTCAAATTTA+GGG 0.278364 8_2:-16879387 Msa1237470:five_prime_UTR
GATACAGTGAATTGGGGTTT+TGG 0.280610 8_2:-16879056 Msa1237470:five_prime_UTR
CACCGAGTATCTGCAAATAC+TGG 0.296151 8_2:-16878127 Msa1237470:CDS
AGATAACGATGGTAAATTAT+TGG 0.301045 8_2:-16879306 Msa1237470:five_prime_UTR
GTTTACGATTCGCGACATTA+TGG 0.303616 8_2:-16879165 Msa1237470:five_prime_UTR
GACAGTCTTCGTATTATGTT+TGG 0.305087 8_2:+16878295 None:intergenic
GACTGTCTTCGCATTAGGTT+TGG 0.306267 8_2:+16878376 None:intergenic
ATTTAGAGATACAGTGAATT+GGG 0.309672 8_2:-16879063 Msa1237470:five_prime_UTR
CTGTTGTTTGCCTAGCTGTT+GGG 0.314055 8_2:-16877236 Msa1237470:CDS
AGGATACAGTGGCTGATTTA+GGG 0.314921 8_2:-16879187 Msa1237470:five_prime_UTR
TCGGGAAAACATGTGTTTAT+TGG 0.317668 8_2:-16878673 Msa1237470:CDS
CAGGGTGTTGTTACACTCTC+TGG 0.319990 8_2:-16876711 Msa1237470:CDS
CCGGCAGAGCAGAATATTAT+AGG 0.333462 8_2:+16876666 None:intergenic
TGGCTGATCTTGGATGTTAT+TGG 0.338473 8_2:-16878775 Msa1237470:five_prime_UTR
CTGCTGCAATTTGTGTTCCT+TGG 0.340425 8_2:-16879137 Msa1237470:five_prime_UTR
TTAGGTCCATCAAGAGTAAA+AGG 0.343847 8_2:+16877564 None:intergenic
GGATCAGACAAACTTTATTC+TGG 0.347221 8_2:-16877856 Msa1237470:CDS
TTCAAGACTGTCTTCGCATT+AGG 0.358547 8_2:+16878371 None:intergenic
GACCGGTTCAGTATTATGTT+TGG 0.360342 8_2:+16878214 None:intergenic
TCATTACAAACTTTAGAATA+GGG 0.362263 8_2:-16878894 Msa1237470:five_prime_UTR
GAATCATCCAATTCTGATAT+GGG 0.364051 8_2:-16878963 Msa1237470:five_prime_UTR
AACCAGTTTAAAAGGGGAAT+TGG 0.367309 8_2:+16877284 None:intergenic
TCTTCATGCAGAGCTGATAC+TGG 0.367762 8_2:-16878503 Msa1237470:CDS
TGAATAACCCATATCAGAAT+TGG 0.372057 8_2:+16879002 None:intergenic
AATTTAGAGATACAGTGAAT+TGG 0.372154 8_2:-16879064 Msa1237470:five_prime_UTR
TGAAGTAACGAAACAAATAA+AGG 0.373211 8_2:+16879396 None:intergenic
ATCCAGGGATCAAACCATTA+AGG 0.373611 8_2:-16877190 Msa1237470:intron
ACCGGTTCAGTATTATGTTT+GGG 0.381120 8_2:+16878215 None:intergenic
TTCATTACAAACTTTAGAAT+AGG 0.381364 8_2:-16878895 Msa1237470:five_prime_UTR
GGCTCCAAGATGTTGTATTC+AGG 0.381554 8_2:-16877213 Msa1237470:CDS
TCCCTCAAGCTTTGCTATTG+AGG 0.382939 8_2:+16878034 None:intergenic
CCTTCGTGTTATGTTTGGTA+AGG 0.395085 8_2:+16878429 None:intergenic
TGCAGCCTTCGTGTTATGTT+TGG 0.404114 8_2:+16878424 None:intergenic
GAATCGTCCAATTCTGATAT+GGG 0.410260 8_2:-16879009 Msa1237470:five_prime_UTR
TCATTGTAAACTTTATAATT+GGG 0.410791 8_2:-16879245 Msa1237470:five_prime_UTR
TACCTTAATGGTTTGATCCC+TGG 0.415666 8_2:+16877188 None:intergenic
CCGGTCTTGAATAGAAAGAT+TGG 0.418536 8_2:-16878197 Msa1237470:CDS
AACAACTCTCATCGTTCCTT+CGG 0.418701 8_2:-16879525 Msa1237470:five_prime_UTR
GTATTTCCTCCAATTCTGTA+TGG 0.418948 8_2:-16879284 Msa1237470:five_prime_UTR
ACAGTCTTGAATAGAAAGAT+TGG 0.421505 8_2:-16878359 Msa1237470:CDS
AAAACCACGAATGTAAATTC+TGG 0.421752 8_2:+16878072 None:intergenic
TTCTTCACTGGAGACAGAAC+TGG 0.422568 8_2:-16876440 Msa1237470:CDS
GCAGGAGAGCAAAATGCAAT+TGG 0.424348 8_2:+16876248 None:intergenic
TGGGACAAGTTCTTGTTATC+CGG 0.428190 8_2:-16876955 Msa1237470:CDS
GTTTGCTGACAGTCTGGAAA+TGG 0.431501 8_2:-16876418 Msa1237470:CDS
CTTCGTATTATGTTTGGAAA+AGG 0.435286 8_2:+16878301 None:intergenic
TTCTCATCTTTATCGCTCTC+AGG 0.436846 8_2:-16879501 Msa1237470:five_prime_UTR
GAACTGGTTTGCTGACAGTC+TGG 0.438059 8_2:-16876424 Msa1237470:CDS
ATGTGTTGATGTAACGAATC+TGG 0.438520 8_2:-16877788 Msa1237470:CDS
CTTTATTCTGGCAGCACGGA+TGG 0.439016 8_2:-16877844 Msa1237470:CDS
GATACTCATACACTCTTAGC+TGG 0.440260 8_2:-16877510 Msa1237470:CDS
GTGAATGACAGTTGTGTTCA+TGG 0.441949 8_2:-16878104 Msa1237470:CDS
ACTGTCTTCGCATTAGGTTT+GGG 0.444520 8_2:+16878377 None:intergenic
GGCTTAGTTGATATAGCTCC+AGG 0.445857 8_2:-16876470 Msa1237470:CDS
TTTAAAAGGGGAATTGGCTT+CGG 0.448072 8_2:+16877290 None:intergenic
AGTGCCAGAATTTACATTCG+TGG 0.450873 8_2:-16878076 Msa1237470:CDS
CTTCGTGTTATGTTTGGTAA+GGG 0.452866 8_2:+16878430 None:intergenic
TATCACTGGAATGACAATTC+CGG 0.457711 8_2:-16877881 Msa1237470:CDS
GCATTACAAGAAGCAGTTGC+CGG 0.459171 8_2:+16878599 None:intergenic
ACATGTGTTTATTGGCTCGC+TGG 0.462559 8_2:-16878665 Msa1237470:CDS
TCAAAACAAAGCAGGGACTT+TGG 0.463001 8_2:-16876902 Msa1237470:CDS
GTGATGCAACCAGTTTAAAA+GGG 0.463109 8_2:+16877277 None:intergenic
AATGCAACAGAAATCCTTGT+AGG 0.464299 8_2:-16878640 Msa1237470:CDS
TCTGTTGTTTGCCTAGCTGT+TGG 0.467062 8_2:-16877237 Msa1237470:CDS
CAGTCACCTCCCTTATCTGT+TGG 0.468487 8_2:-16876975 Msa1237470:CDS
GATGGTGCAGTCAGATGAAC+CGG 0.468498 8_2:+16876936 None:intergenic
TCGGCAACAATACGTGTTCC+CGG 0.468909 8_2:-16879423 Msa1237470:five_prime_UTR
TGTTGTTTGCCTAGCTGTTG+GGG 0.470098 8_2:-16877235 Msa1237470:CDS
GAAGGAACGATGAGAGTTGT+TGG 0.476070 8_2:+16879527 None:intergenic
ATAGCATGGACTTGTCCCTT+AGG 0.477981 8_2:+16877546 None:intergenic
TCCCAAACATAATACTGAAC+CGG 0.478214 8_2:-16878216 Msa1237470:CDS
GAACTTGTCCCAACAGATAA+GGG 0.478337 8_2:+16876966 None:intergenic
AGATGTTGTATTCAGGATCC+AGG 0.478981 8_2:-16877206 Msa1237470:CDS
TTCGCATTAGGTTTGGGAAG+GGG 0.484751 8_2:+16878383 None:intergenic
CTTTGATCAGTGAGGGCCCA+TGG 0.488204 8_2:-16877750 Msa1237470:CDS
ATCATAATGCTGCATGGAAG+CGG 0.488251 8_2:-16878562 Msa1237470:CDS
CCAATCTTTCTATTCAAGAC+CGG 0.489613 8_2:+16878197 None:intergenic
GGATCCTGAATACAACATCT+TGG 0.489979 8_2:+16877209 None:intergenic
AGAACTTGTCCCAACAGATA+AGG 0.491353 8_2:+16876965 None:intergenic
CCAGGCGGTCTCTTCTTCAC+TGG 0.491679 8_2:-16876452 Msa1237470:CDS
CATGTGTTTATTGGCTCGCT+GGG 0.491753 8_2:-16878664 Msa1237470:CDS
GTCTGGTTTCAAAACAAAGC+AGG 0.492572 8_2:-16876910 Msa1237470:CDS
TCTTGTAATGCTGCCAACGC+TGG 0.492864 8_2:-16878587 Msa1237470:CDS
TAGGATAAAGTGGCTGATCT+TGG 0.492939 8_2:-16878785 Msa1237470:five_prime_UTR
TAAGAGTGTATGAGTATCCT+TGG 0.493515 8_2:+16877515 None:intergenic
CTGACTGCACCATCAAGGTC+TGG 0.495156 8_2:-16876927 Msa1237470:CDS
TCCTCAATAGCAAAGCTTGA+GGG 0.497866 8_2:-16878035 Msa1237470:CDS
AGGGTGTTGTTACACTCTCT+GGG 0.499535 8_2:-16876710 Msa1237470:CDS
TCTTCGCATTAGGTTTGGGA+AGG 0.502143 8_2:+16878381 None:intergenic
ATTCCTGGTGGAAGCGAAAG+AGG 0.502808 8_2:+16876344 None:intergenic
ACTGTCTTGAATAGAAAGAC+TGG 0.503936 8_2:-16878278 Msa1237470:CDS
CCTATAATATTCTGCTCTGC+CGG 0.508251 8_2:-16876666 Msa1237470:CDS
ATCAATCATGGATGTGAAAG+TGG 0.508504 8_2:-16878723 Msa1237470:exon
CGGATGGGACACTTCGGACA+TGG 0.508983 8_2:-16877828 Msa1237470:CDS
TTGTTTGCAAAGCAAGAAGT+TGG 0.511045 8_2:-16876491 Msa1237470:CDS
CTTATTAGGGTGATGATTTG+GGG 0.516447 8_2:-16879336 Msa1237470:five_prime_UTR
CGAAACAAATAAAGGTTCGC+CGG 0.520147 8_2:+16879404 None:intergenic
GGTATTCGATTGTTGTTGGT+AGG 0.522153 8_2:-16878804 Msa1237470:five_prime_UTR
AGTCACCTCCCTTATCTGTT+GGG 0.522835 8_2:-16876974 Msa1237470:CDS
CCATGCTATGATTGTTGCCA+AGG 0.524769 8_2:-16877532 Msa1237470:CDS
TGCCGATGATCCATGGTAAG+AGG 0.525012 8_2:+16879440 None:intergenic
TAAAGTTTGTCTGATCCATC+CGG 0.525387 8_2:+16877862 None:intergenic
ATTCCTCTTTCGCTTCCACC+AGG 0.525997 8_2:-16876347 Msa1237470:three_prime_UTR
TACGATTCAACCTCTTACCA+TGG 0.526022 8_2:-16879450 Msa1237470:five_prime_UTR
AATGACATTGAATAAATAGC+AGG 0.528202 8_2:+16876230 None:intergenic
GTTCAGTATTATGTTTGGGA+AGG 0.528869 8_2:+16878219 None:intergenic
ACCCAGTATTTGCAGATACT+CGG 0.530599 8_2:+16878125 None:intergenic
AAGTATTGTTGAATGATCAA+TGG 0.531099 8_2:+16876308 None:intergenic
ATGCAATTTCACCGTGCGAT+GGG 0.532017 8_2:+16878534 None:intergenic
CTTCGCATTAGGTTTGGGAA+GGG 0.535549 8_2:+16878382 None:intergenic
GTAGAACTGAACAAGTCATC+GGG 0.535669 8_2:-16878691 Msa1237470:CDS
TTCATCTGACTGCACCATCA+AGG 0.538469 8_2:-16876932 Msa1237470:CDS
GTTTCTTCATAGTGCAGCGC+CGG 0.544515 8_2:-16878618 Msa1237470:CDS
TTCAGTATTATGTTTGGGAA+GGG 0.547534 8_2:+16878220 None:intergenic
TCTCATACACATACGATGAA+TGG 0.547953 8_2:+16878456 None:intergenic
CAAAGCAGGGACTTTGGAAG+TGG 0.549468 8_2:-16876896 Msa1237470:CDS
AAGATTGGAGATGACAGAGA+TGG 0.549609 8_2:-16878182 Msa1237470:CDS
TTTACTCTTGATGGACCTAA+GGG 0.550479 8_2:-16877561 Msa1237470:CDS
AAACTGGTTGCATCACTATG+TGG 0.551665 8_2:-16877270 Msa1237470:CDS
TTTAGAGATACAGTGAATTG+GGG 0.555605 8_2:-16879062 Msa1237470:five_prime_UTR
TTCGTGTTATGTTTGGTAAG+GGG 0.560021 8_2:+16878431 None:intergenic
CCAGTGAAGAAGAGACCGCC+TGG 0.560511 8_2:+16876452 None:intergenic
TCTATACAGATTTGCAGAGA+GGG 0.561604 8_2:-16876519 Msa1237470:intron
ACCGAGTATCTGCAAATACT+GGG 0.565524 8_2:-16878126 Msa1237470:CDS
TTCCTCAATAGCAAAGCTTG+AGG 0.567998 8_2:-16878036 Msa1237470:CDS
GTATTGTTGCCGATGATCCA+TGG 0.569294 8_2:+16879433 None:intergenic
GAAACAAATAAAGGTTCGCC+GGG 0.569432 8_2:+16879405 None:intergenic
AACCTCTTACCATGGATCAT+CGG 0.571690 8_2:-16879442 Msa1237470:five_prime_UTR
GAGGTGAACTGAATTGTCTC+CGG 0.576150 8_2:+16876647 None:intergenic
AGTAGAACTGAACAAGTCAT+CGG 0.577794 8_2:-16878692 Msa1237470:CDS
GCAGCACGGATGGGACACTT+CGG 0.578120 8_2:-16877834 Msa1237470:CDS
AGATTGGAGATGACAGAGAT+GGG 0.578565 8_2:-16878181 Msa1237470:CDS
TTTATTCTGGCAGCACGGAT+GGG 0.579379 8_2:-16877843 Msa1237470:CDS
TGTGTTGATGTAACGAATCT+GGG 0.579833 8_2:-16877787 Msa1237470:CDS
GGATGGGACACTTCGGACAT+GGG 0.580368 8_2:-16877827 Msa1237470:CDS
AAAGCTTGAGGGACACAAGA+AGG 0.580476 8_2:-16878024 Msa1237470:intron
ATTACCTCTTTGATCAGTGA+GGG 0.582135 8_2:-16877757 Msa1237470:CDS
GAAATGGTTGGAAGAATACA+AGG 0.586054 8_2:-16876402 Msa1237470:CDS
GTTGGAAGAATACAAGGTTG+TGG 0.589043 8_2:-16876396 Msa1237470:CDS
CCTCTTGAGTCATGACAAAG+TGG 0.592209 8_2:-16876370 Msa1237470:exon
GATGCAATTTCACCGTGCGA+TGG 0.594792 8_2:+16878533 None:intergenic
CTGGATATCATAATGCTGCA+TGG 0.597380 8_2:-16878568 Msa1237470:CDS
AGGCACAGCTCAAGTTGTTG+AGG 0.598388 8_2:-16878327 Msa1237470:CDS
TTGTTGTTGGTAGGATAAAG+TGG 0.600854 8_2:-16878795 Msa1237470:five_prime_UTR
CCACTTTGTCATGACTCAAG+AGG 0.605130 8_2:+16876370 None:intergenic
GTATCAGCTCTGCATGAAGA+CGG 0.605438 8_2:+16878506 None:intergenic
GTTGTTTGCCTAGCTGTTGG+GGG 0.610117 8_2:-16877234 Msa1237470:CDS
TCTGGTTTCAAAACAAAGCA+GGG 0.615231 8_2:-16876909 Msa1237470:CDS
CATCAACACATTGACCAGTA+CGG 0.615787 8_2:+16877800 None:intergenic
CTTACGATGGCAGTTCGTAG+AGG 0.616152 8_2:+16876628 None:intergenic
CAAACTTTATTCTGGCAGCA+CGG 0.616301 8_2:-16877848 Msa1237470:CDS
GCTGACAGTCTGGAAATGGT+TGG 0.617109 8_2:-16876414 Msa1237470:CDS
GATGTTGTATTCAGGATCCA+GGG 0.620953 8_2:-16877205 Msa1237470:CDS
TTATTAGGGTGATGATTTGG+GGG 0.623180 8_2:-16879335 Msa1237470:five_prime_UTR
CGATAAAGATGAGAATCCGA+AGG 0.623639 8_2:+16879509 None:intergenic
AGAAAGATTGGAGATAACAA+AGG 0.628689 8_2:-16878347 Msa1237470:CDS
AGCATTATGATATCCAGCGT+TGG 0.629499 8_2:+16878574 None:intergenic
TGATGCAACCAGTTTAAAAG+GGG 0.631191 8_2:+16877278 None:intergenic
CCTTGGCAACAATCATAGCA+TGG 0.631546 8_2:+16877532 None:intergenic
TACACTCTTAGCTGGAGCAG+AGG 0.636749 8_2:-16877502 Msa1237470:intron
TCATGGATGTGAAAGTGGCA+AGG 0.637601 8_2:-16878718 Msa1237470:CDS
TTGTACACTCAAATGTGTCA+AGG 0.637803 8_2:+16877022 None:intergenic
GCACTATGAAGAAACCTACA+AGG 0.638653 8_2:+16878626 None:intergenic
TGGTATGAAGGACACTGTCA+AGG 0.640615 8_2:-16877719 Msa1237470:intron
AGCAAGCACAGAAGTTGCTG+AGG 0.642199 8_2:-16878246 Msa1237470:CDS
ATCTATACAGATTTGCAGAG+AGG 0.644523 8_2:-16876520 Msa1237470:intron
ACTGGAATGACAATTCCGGA+TGG 0.647752 8_2:-16877877 Msa1237470:CDS
TATTTGCAGATACTCGGTGA+AGG 0.649197 8_2:+16878131 None:intergenic
GGCAAACAACAGATTTAGTG+TGG 0.650060 8_2:+16877247 None:intergenic
AATTACCTCTTTGATCAGTG+AGG 0.650534 8_2:-16877758 Msa1237470:CDS
AGGATGGTGTAATTTCTGCA+TGG 0.659390 8_2:-16877323 Msa1237470:CDS
AGTGGCATATTCACACAATG+TGG 0.660456 8_2:-16876878 Msa1237470:CDS
GGTGTAATTTCTGCATGGAG+AGG 0.661385 8_2:-16877318 Msa1237470:CDS
TGGGCCCTCACTGATCAAAG+AGG 0.666424 8_2:+16877753 None:intergenic
CTATACAGATTTGCAGAGAG+GGG 0.671266 8_2:-16876518 Msa1237470:intron
GAAACCCTAAAATTGAACCA+AGG 0.687005 8_2:+16879120 None:intergenic
TCCATCAAGAGTAAAAGGTG+CGG 0.691279 8_2:+16877569 None:intergenic
CTTGTCCCAACAGATAAGGG+AGG 0.723076 8_2:+16876969 None:intergenic
CCTTACCAAACATAACACGA+AGG 0.752214 8_2:-16878429 Msa1237470:CDS
TTAGTTGATATAGCTCCAGG+CGG 0.764531 8_2:-16876467 Msa1237470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTATTTTACTTATT+AGG - chr8_2:16876384-16876403 Msa1237470:exon 10.0%
!!! TTCTTTTATTTTACTTATTA+GGG - chr8_2:16876385-16876404 Msa1237470:CDS 10.0%
!!! TTTCATTTATTTTACTTATT+AGG - chr8_2:16876633-16876652 Msa1237470:CDS 10.0%
!!! TTCATTTATTTTACTTATTA+GGG - chr8_2:16876634-16876653 Msa1237470:CDS 10.0%
!! TTCATTGTAAACTTTATAAT+TGG - chr8_2:16876488-16876507 Msa1237470:CDS 15.0%
!! TCATTGTAAACTTTATAATT+GGG - chr8_2:16876489-16876508 Msa1237470:CDS 15.0%
!!! CAAATTTTTATTTAAATCAC+AGG - chr8_2:16878391-16878410 Msa1237470:CDS 15.0%
!!! TTTTTTATTCTGATTATTAC+AGG - chr8_2:16879004-16879023 Msa1237470:five_prime_UTR 15.0%
!!! TTTTTATTCTGATTATTACA+GGG - chr8_2:16879005-16879024 Msa1237470:five_prime_UTR 15.0%
!!! AAATTTAGGGTTTCAATTTT+AGG - chr8_2:16876360-16876379 Msa1237470:three_prime_UTR 20.0%
!!! AATTTAGGGTTTCAATTTTA+GGG - chr8_2:16876361-16876380 Msa1237470:three_prime_UTR 20.0%
!!! TTCATTACAAACTTTAGAAT+AGG - chr8_2:16876839-16876858 Msa1237470:intron 20.0%
!!! TCATTACAAACTTTAGAATA+GGG - chr8_2:16876840-16876859 Msa1237470:intron 20.0%
!!! TTTTAGAGTATAATCAATCA+TGG - chr8_2:16876999-16877018 Msa1237470:CDS 20.0%
!! AAACATTTCTCAAAAACATA+AGG + chr8_2:16877767-16877786 None:intergenic 20.0%
!! AAAATATACTATACAACTAG+TGG + chr8_2:16878322-16878341 None:intergenic 20.0%
!!! TTTTTATTTAAATCACAGGA+TGG - chr8_2:16878395-16878414 Msa1237470:CDS 20.0%
!! AAACAATAGAAATACCTTAA+TGG + chr8_2:16878561-16878580 None:intergenic 20.0%
!!! ATTAAGGTATTTCTATTGTT+TGG - chr8_2:16878560-16878579 Msa1237470:CDS 20.0%
!! ATTTCTATTGTTTGGAAATA+CGG - chr8_2:16878568-16878587 Msa1237470:CDS 20.0%
!!! TATCTTTTATTGTTTTATCC+AGG - chr8_2:16878682-16878701 Msa1237470:CDS 20.0%
!! ATATTATGTTGAACATCATT+TGG - chr8_2:16878936-16878955 Msa1237470:five_prime_UTR 20.0%
!! TTTGTTTGTAGTGATTAAAT+TGG - chr8_2:16878965-16878984 Msa1237470:five_prime_UTR 20.0%
!!! AATATTATAGGCTTATTTTC+TGG + chr8_2:16879059-16879078 None:intergenic 20.0%
!! AAAGAGCAGTTTATATTAAA+TGG - chr8_2:16879532-16879551 Msa1237470:five_prime_UTR 20.0%
!! TTCCAATTTCGATCAATTTT+AGG - chr8_2:16876259-16876278 Msa1237470:three_prime_UTR 25.0%
!! TCCAATTTCGATCAATTTTA+GGG - chr8_2:16876260-16876279 Msa1237470:three_prime_UTR 25.0%
! TGAAGTAACGAAACAAATAA+AGG + chr8_2:16876341-16876360 None:intergenic 25.0%
! TGTTTCGTTACTTCAAATTT+AGG - chr8_2:16876346-16876365 Msa1237470:three_prime_UTR 25.0%
! GTTTCGTTACTTCAAATTTA+GGG - chr8_2:16876347-16876366 Msa1237470:three_prime_UTR 25.0%
! AGATAACGATGGTAAATTAT+TGG - chr8_2:16876428-16876447 Msa1237470:CDS 25.0%
!! TTTTACTTATTAGGGTTTTC+AGG - chr8_2:16876642-16876661 Msa1237470:CDS 25.0%
! AATTTAGAGATACAGTGAAT+TGG - chr8_2:16876670-16876689 Msa1237470:CDS 25.0%
! ATTTAGAGATACAGTGAATT+GGG - chr8_2:16876671-16876690 Msa1237470:CDS 25.0%
!!! AATTTACATTCGTGGTTTTA+TGG - chr8_2:16877666-16877685 Msa1237470:intron 25.0%
!! TTTGAGAAATGTTTGAAACT+AGG - chr8_2:16877773-16877792 Msa1237470:CDS 25.0%
! CAAAATCAGCTTTCATATTA+TGG + chr8_2:16878106-16878125 None:intergenic 25.0%
! TCTAATCTATGAATCATCTT+TGG - chr8_2:16878593-16878612 Msa1237470:CDS 25.0%
!!! TTTATTGTTTTATCCAGGTT+TGG - chr8_2:16878687-16878706 Msa1237470:CDS 25.0%
!!! TTATTGTTTTATCCAGGTTT+GGG - chr8_2:16878688-16878707 Msa1237470:CDS 25.0%
! TATATATAGCATTTGTGCAT+AGG - chr8_2:16878901-16878920 Msa1237470:five_prime_UTR 25.0%
! TTTGTAGTGATTAAATTGGT+AGG - chr8_2:16878969-16878988 Msa1237470:five_prime_UTR 25.0%
!! AAAAATAAATTGATTCCTGG+TGG + chr8_2:16879405-16879424 None:intergenic 25.0%
!! GGAAAAAATAAATTGATTCC+TGG + chr8_2:16879408-16879427 None:intergenic 25.0%
!! AAGTATTGTTGAATGATCAA+TGG + chr8_2:16879429-16879448 None:intergenic 25.0%
! AATGACATTGAATAAATAGC+AGG + chr8_2:16879507-16879526 None:intergenic 25.0%
ACCCTAAAATTGATCGAAAT+TGG + chr8_2:16876264-16876283 None:intergenic 30.0%
TACTTATTAGGGTGATGATT+TGG - chr8_2:16876396-16876415 Msa1237470:CDS 30.0%
ACTTATTAGGGTGATGATTT+GGG - chr8_2:16876397-16876416 Msa1237470:CDS 30.0%
AACGAAAAACCATACAGAAT+TGG + chr8_2:16876462-16876481 None:intergenic 30.0%
! TATTCAACATCTTTTGCATG+AGG - chr8_2:16876527-16876546 Msa1237470:intron 30.0%
! TGTTCCTTGGTTCAATTTTA+GGG - chr8_2:16876610-16876629 Msa1237470:intron 30.0%
TTTAGAGATACAGTGAATTG+GGG - chr8_2:16876672-16876691 Msa1237470:CDS 30.0%
TGAATAACCCATATCAGAAT+TGG + chr8_2:16876735-16876754 None:intergenic 30.0%
TGAATCATCCAATTCTGATA+TGG - chr8_2:16876770-16876789 Msa1237470:intron 30.0%
GAATCATCCAATTCTGATAT+GGG - chr8_2:16876771-16876790 Msa1237470:intron 30.0%
! GAATAGGGCATTATAAAGTT+TGG - chr8_2:16876855-16876874 Msa1237470:intron 30.0%
! GTAATGAACAATTTTGCATG+AGG - chr8_2:16876877-16876896 Msa1237470:CDS 30.0%
AACAATCGAATACCAAAAAC+AGG + chr8_2:16876924-16876943 None:intergenic 30.0%
! TTTTGGTATTCGATTGTTGT+TGG - chr8_2:16876926-16876945 Msa1237470:CDS 30.0%
ACAGTCTTGAATAGAAAGAT+TGG - chr8_2:16877375-16877394 Msa1237470:intron 30.0%
AGAAAGATTGGAGATAACAA+AGG - chr8_2:16877387-16877406 Msa1237470:intron 30.0%
CTTCGTATTATGTTTGGAAA+AGG + chr8_2:16877436-16877455 None:intergenic 30.0%
TTCAGTATTATGTTTGGGAA+GGG + chr8_2:16877517-16877536 None:intergenic 30.0%
AAAACCACGAATGTAAATTC+TGG + chr8_2:16877665-16877684 None:intergenic 30.0%
CATTTCTCAAAAACATAAGG+TGG + chr8_2:16877764-16877783 None:intergenic 30.0%
! ATTTTTGAACAGCTTATCAC+TGG - chr8_2:16877839-16877858 Msa1237470:CDS 30.0%
TCATACCAACAAAAATCCAT+GGG + chr8_2:16878003-16878022 None:intergenic 30.0%
TTCATACCAACAAAAATCCA+TGG + chr8_2:16878004-16878023 None:intergenic 30.0%
! ATGGATTTTTGTTGGTATGA+AGG - chr8_2:16878003-16878022 Msa1237470:intron 30.0%
AATCTATGAATCATCTTTGG+TGG - chr8_2:16878596-16878615 Msa1237470:CDS 30.0%
AAGTTTACATAACAACCTGA+TGG + chr8_2:16879149-16879168 None:intergenic 30.0%
CTTGAAATGTAATCTTGAAC+TGG - chr8_2:16879166-16879185 Msa1237470:five_prime_UTR 30.0%
CTTATTAGGGTGATGATTTG+GGG - chr8_2:16876398-16876417 Msa1237470:CDS 35.0%
! TTATTAGGGTGATGATTTGG+GGG - chr8_2:16876399-16876418 Msa1237470:CDS 35.0%
GTATTTCCTCCAATTCTGTA+TGG - chr8_2:16876450-16876469 Msa1237470:CDS 35.0%
GAAAAACCATACAGAATTGG+AGG + chr8_2:16876459-16876478 None:intergenic 35.0%
! GTGTTCCTTGGTTCAATTTT+AGG - chr8_2:16876609-16876628 Msa1237470:intron 35.0%
GAAACCCTAAAATTGAACCA+AGG + chr8_2:16876617-16876636 None:intergenic 35.0%
! ATACAGTGAATTGGGGTTTT+GGG - chr8_2:16876679-16876698 Msa1237470:CDS 35.0%
TGAATCGTCCAATTCTGATA+TGG - chr8_2:16876724-16876743 Msa1237470:intron 35.0%
GAATCGTCCAATTCTGATAT+GGG - chr8_2:16876725-16876744 Msa1237470:intron 35.0%
GCAAAAACCCATATCAGAAT+TGG + chr8_2:16876781-16876800 None:intergenic 35.0%
! TCTGATATGGGTTTTTGCTA+TGG - chr8_2:16876783-16876802 Msa1237470:intron 35.0%
! TGTTCTACTCTTCCTGTTTT+TGG - chr8_2:16876909-16876928 Msa1237470:CDS 35.0%
! TTGTTGTTGGTAGGATAAAG+TGG - chr8_2:16876939-16876958 Msa1237470:CDS 35.0%
ATCAATCATGGATGTGAAAG+TGG - chr8_2:16877011-16877030 Msa1237470:CDS 35.0%
AGTAGAACTGAACAAGTCAT+CGG - chr8_2:16877042-16877061 Msa1237470:intron 35.0%
TCGGGAAAACATGTGTTTAT+TGG - chr8_2:16877061-16877080 Msa1237470:intron 35.0%
AATGCAACAGAAATCCTTGT+AGG - chr8_2:16877094-16877113 Msa1237470:intron 35.0%
TCTCATACACATACGATGAA+TGG + chr8_2:16877281-16877300 None:intergenic 35.0%
TTCGTGTTATGTTTGGTAAG+GGG + chr8_2:16877306-16877325 None:intergenic 35.0%
CTTCGTGTTATGTTTGGTAA+GGG + chr8_2:16877307-16877326 None:intergenic 35.0%
GACAGTCTTCGTATTATGTT+TGG + chr8_2:16877442-16877461 None:intergenic 35.0%
ACTGTCTTGAATAGAAAGAC+TGG - chr8_2:16877456-16877475 Msa1237470:intron 35.0%
GTTCAGTATTATGTTTGGGA+AGG + chr8_2:16877518-16877537 None:intergenic 35.0%
TCCCAAACATAATACTGAAC+CGG - chr8_2:16877518-16877537 Msa1237470:CDS 35.0%
! ACCGGTTCAGTATTATGTTT+GGG + chr8_2:16877522-16877541 None:intergenic 35.0%
CCAATCTTTCTATTCAAGAC+CGG + chr8_2:16877378-16877397 None:intergenic 35.0%
!!! ATTCGTGGTTTTATGGTGAT+GGG - chr8_2:16877673-16877692 Msa1237470:intron 35.0%
TATCACTGGAATGACAATTC+CGG - chr8_2:16877853-16877872 Msa1237470:CDS 35.0%
TAAAGTTTGTCTGATCCATC+CGG + chr8_2:16877875-16877894 None:intergenic 35.0%
GGATCAGACAAACTTTATTC+TGG - chr8_2:16877878-16877897 Msa1237470:CDS 35.0%
! ATGTGTTGATGTAACGAATC+TGG - chr8_2:16877946-16877965 Msa1237470:intron 35.0%
! TGTGTTGATGTAACGAATCT+GGG - chr8_2:16877947-16877966 Msa1237470:intron 35.0%
AATTACCTCTTTGATCAGTG+AGG - chr8_2:16877976-16877995 Msa1237470:intron 35.0%
ATTACCTCTTTGATCAGTGA+GGG - chr8_2:16877977-16877996 Msa1237470:intron 35.0%
!! GAAAGCTGATTTTGTCATTG+TGG - chr8_2:16878112-16878131 Msa1237470:CDS 35.0%
TGTCATTGTGGTATTTGTGA+AGG - chr8_2:16878124-16878143 Msa1237470:CDS 35.0%
TTAGGTCCATCAAGAGTAAA+AGG + chr8_2:16878173-16878192 None:intergenic 35.0%
!! TTTTACTCTTGATGGACCTA+AGG - chr8_2:16878172-16878191 Msa1237470:CDS 35.0%
! TTTACTCTTGATGGACCTAA+GGG - chr8_2:16878173-16878192 Msa1237470:CDS 35.0%
! TAAGAGTGTATGAGTATCCT+TGG + chr8_2:16878222-16878241 None:intergenic 35.0%
ACAACCATAAAGCAATGTGT+GGG + chr8_2:16878264-16878283 None:intergenic 35.0%
AACAACCATAAAGCAATGTG+TGG + chr8_2:16878265-16878284 None:intergenic 35.0%
! TTTAAAAGGGGAATTGGCTT+CGG + chr8_2:16878447-16878466 None:intergenic 35.0%
AACCAGTTTAAAAGGGGAAT+TGG + chr8_2:16878453-16878472 None:intergenic 35.0%
TGATGCAACCAGTTTAAAAG+GGG + chr8_2:16878459-16878478 None:intergenic 35.0%
GTGATGCAACCAGTTTAAAA+GGG + chr8_2:16878460-16878479 None:intergenic 35.0%
AGTGATGCAACCAGTTTAAA+AGG + chr8_2:16878461-16878480 None:intergenic 35.0%
TTGTACACTCAAATGTGTCA+AGG + chr8_2:16878715-16878734 None:intergenic 35.0%
! TCTGGTTTCAAAACAAAGCA+GGG - chr8_2:16878825-16878844 Msa1237470:five_prime_UTR 35.0%
GTAGTGATTAAATTGGTAGG+AGG - chr8_2:16878972-16878991 Msa1237470:five_prime_UTR 35.0%
GGTAGCAAATTTACTTACGA+TGG + chr8_2:16879122-16879141 None:intergenic 35.0%
ATCTATACAGATTTGCAGAG+AGG - chr8_2:16879214-16879233 Msa1237470:five_prime_UTR 35.0%
TCTATACAGATTTGCAGAGA+GGG - chr8_2:16879215-16879234 Msa1237470:five_prime_UTR 35.0%
TTGTTTGCAAAGCAAGAAGT+TGG - chr8_2:16879243-16879262 Msa1237470:five_prime_UTR 35.0%
GAAATGGTTGGAAGAATACA+AGG - chr8_2:16879332-16879351 Msa1237470:five_prime_UTR 35.0%
AACAACTCTCATCGTTCCTT+CGG - chr8_2:16876209-16876228 Msa1237470:three_prime_UTR 40.0%
CGATAAAGATGAGAATCCGA+AGG + chr8_2:16876228-16876247 None:intergenic 40.0%
TTCTCATCTTTATCGCTCTC+AGG - chr8_2:16876233-16876252 Msa1237470:three_prime_UTR 40.0%
TACGATTCAACCTCTTACCA+TGG - chr8_2:16876284-16876303 Msa1237470:three_prime_UTR 40.0%
AACCTCTTACCATGGATCAT+CGG - chr8_2:16876292-16876311 Msa1237470:three_prime_UTR 40.0%
GAAACAAATAAAGGTTCGCC+GGG + chr8_2:16876332-16876351 None:intergenic 40.0%
CGAAACAAATAAAGGTTCGC+CGG + chr8_2:16876333-16876352 None:intergenic 40.0%
! TCTTTTGCATGAGGATACAG+TGG - chr8_2:16876536-16876555 Msa1237470:intron 40.0%
! AGGATACAGTGGCTGATTTA+GGG - chr8_2:16876547-16876566 Msa1237470:intron 40.0%
GTTTACGATTCGCGACATTA+TGG - chr8_2:16876569-16876588 Msa1237470:intron 40.0%
! GATACAGTGAATTGGGGTTT+TGG - chr8_2:16876678-16876697 Msa1237470:CDS 40.0%
! GGTATTCGATTGTTGTTGGT+AGG - chr8_2:16876930-16876949 Msa1237470:CDS 40.0%
TAGGATAAAGTGGCTGATCT+TGG - chr8_2:16876949-16876968 Msa1237470:CDS 40.0%
TGGCTGATCTTGGATGTTAT+TGG - chr8_2:16876959-16876978 Msa1237470:CDS 40.0%
GTAGAACTGAACAAGTCATC+GGG - chr8_2:16877043-16877062 Msa1237470:intron 40.0%
GCACTATGAAGAAACCTACA+AGG + chr8_2:16877111-16877130 None:intergenic 40.0%
AGCATTATGATATCCAGCGT+TGG + chr8_2:16877163-16877182 None:intergenic 40.0%
CTGGATATCATAATGCTGCA+TGG - chr8_2:16877166-16877185 Msa1237470:intron 40.0%
ATCATAATGCTGCATGGAAG+CGG - chr8_2:16877172-16877191 Msa1237470:intron 40.0%
CCTTCGTGTTATGTTTGGTA+AGG + chr8_2:16877308-16877327 None:intergenic 40.0%
CCTTACCAAACATAACACGA+AGG - chr8_2:16877305-16877324 Msa1237470:CDS 40.0%
ACTGTCTTCGCATTAGGTTT+GGG + chr8_2:16877360-16877379 None:intergenic 40.0%
TTCAAGACTGTCTTCGCATT+AGG + chr8_2:16877366-16877385 None:intergenic 40.0%
! GACCGGTTCAGTATTATGTT+TGG + chr8_2:16877523-16877542 None:intergenic 40.0%
CCGGTCTTGAATAGAAAGAT+TGG - chr8_2:16877537-16877556 Msa1237470:CDS 40.0%
AAGATTGGAGATGACAGAGA+TGG - chr8_2:16877552-16877571 Msa1237470:CDS 40.0%
AGATTGGAGATGACAGAGAT+GGG - chr8_2:16877553-16877572 Msa1237470:CDS 40.0%
! TATTTGCAGATACTCGGTGA+AGG + chr8_2:16877606-16877625 None:intergenic 40.0%
ACCGAGTATCTGCAAATACT+GGG - chr8_2:16877608-16877627 Msa1237470:intron 40.0%
ACCCAGTATTTGCAGATACT+CGG + chr8_2:16877612-16877631 None:intergenic 40.0%
GTGAATGACAGTTGTGTTCA+TGG - chr8_2:16877630-16877649 Msa1237470:intron 40.0%
AGTGCCAGAATTTACATTCG+TGG - chr8_2:16877658-16877677 Msa1237470:intron 40.0%
!!! CATTCGTGGTTTTATGGTGA+TGG - chr8_2:16877672-16877691 Msa1237470:intron 40.0%
TTCCTCAATAGCAAAGCTTG+AGG - chr8_2:16877698-16877717 Msa1237470:intron 40.0%
TCCTCAATAGCAAAGCTTGA+GGG - chr8_2:16877699-16877718 Msa1237470:intron 40.0%
CAAACTTTATTCTGGCAGCA+CGG - chr8_2:16877886-16877905 Msa1237470:CDS 40.0%
CATCAACACATTGACCAGTA+CGG + chr8_2:16877937-16877956 None:intergenic 40.0%
TTGTGGTATTTGTGAAGGCA+TGG - chr8_2:16878129-16878148 Msa1237470:CDS 40.0%
TCCATCAAGAGTAAAAGGTG+CGG + chr8_2:16878168-16878187 None:intergenic 40.0%
GATACTCATACACTCTTAGC+TGG - chr8_2:16878224-16878243 Msa1237470:CDS 40.0%
AGGATGGTGTAATTTCTGCA+TGG - chr8_2:16878411-16878430 Msa1237470:CDS 40.0%
! AGCCAATTCCCCTTTTAAAC+TGG - chr8_2:16878448-16878467 Msa1237470:CDS 40.0%
AAACTGGTTGCATCACTATG+TGG - chr8_2:16878464-16878483 Msa1237470:CDS 40.0%
GGCAAACAACAGATTTAGTG+TGG + chr8_2:16878490-16878509 None:intergenic 40.0%
GGATCCTGAATACAACATCT+TGG + chr8_2:16878528-16878547 None:intergenic 40.0%
AGATGTTGTATTCAGGATCC+AGG - chr8_2:16878528-16878547 Msa1237470:CDS 40.0%
GATGTTGTATTCAGGATCCA+GGG - chr8_2:16878529-16878548 Msa1237470:CDS 40.0%
ATCCAGGGATCAAACCATTA+AGG - chr8_2:16878544-16878563 Msa1237470:CDS 40.0%
TACCTTAATGGTTTGATCCC+TGG + chr8_2:16878549-16878568 None:intergenic 40.0%
GAACTTGTCCCAACAGATAA+GGG + chr8_2:16878771-16878790 None:intergenic 40.0%
AGAACTTGTCCCAACAGATA+AGG + chr8_2:16878772-16878791 None:intergenic 40.0%
! TGGGACAAGTTCTTGTTATC+CGG - chr8_2:16878779-16878798 Msa1237470:five_prime_UTR 40.0%
!!! GTTTTGAAACCAGACCTTGA+TGG + chr8_2:16878819-16878838 None:intergenic 40.0%
! GTCTGGTTTCAAAACAAAGC+AGG - chr8_2:16878824-16878843 Msa1237470:five_prime_UTR 40.0%
TCAAAACAAAGCAGGGACTT+TGG - chr8_2:16878832-16878851 Msa1237470:five_prime_UTR 40.0%
AGTGGCATATTCACACAATG+TGG - chr8_2:16878856-16878875 Msa1237470:five_prime_UTR 40.0%
CCTATAATATTCTGCTCTGC+CGG - chr8_2:16879068-16879087 Msa1237470:five_prime_UTR 40.0%
!! AATTTGCTACCATCACCATC+AGG - chr8_2:16879131-16879150 Msa1237470:five_prime_UTR 40.0%
! ACATAACAACCTGATGGTGA+TGG + chr8_2:16879143-16879162 None:intergenic 40.0%
CTATACAGATTTGCAGAGAG+GGG - chr8_2:16879216-16879235 Msa1237470:five_prime_UTR 40.0%
! TTAGTTGATATAGCTCCAGG+CGG - chr8_2:16879267-16879286 Msa1237470:five_prime_UTR 40.0%
GTTGGAAGAATACAAGGTTG+TGG - chr8_2:16879338-16879357 Msa1237470:five_prime_UTR 40.0%
GAAGGAACGATGAGAGTTGT+TGG + chr8_2:16876210-16876229 None:intergenic 45.0%
GTATTGTTGCCGATGATCCA+TGG + chr8_2:16876304-16876323 None:intergenic 45.0%
! GAGGATACAGTGGCTGATTT+AGG - chr8_2:16876546-16876565 Msa1237470:intron 45.0%
CTGCTGCAATTTGTGTTCCT+TGG - chr8_2:16876597-16876616 Msa1237470:intron 45.0%
TCATGGATGTGAAAGTGGCA+AGG - chr8_2:16877016-16877035 Msa1237470:CDS 45.0%
!! ACATGTGTTTATTGGCTCGC+TGG - chr8_2:16877069-16877088 Msa1237470:intron 45.0%
!! CATGTGTTTATTGGCTCGCT+GGG - chr8_2:16877070-16877089 Msa1237470:intron 45.0%
GCATTACAAGAAGCAGTTGC+CGG + chr8_2:16877138-16877157 None:intergenic 45.0%
ATGCAATTTCACCGTGCGAT+GGG + chr8_2:16877203-16877222 None:intergenic 45.0%
GTATCAGCTCTGCATGAAGA+CGG + chr8_2:16877231-16877250 None:intergenic 45.0%
TCTTCATGCAGAGCTGATAC+TGG - chr8_2:16877231-16877250 Msa1237470:CDS 45.0%
TGCAGCCTTCGTGTTATGTT+TGG + chr8_2:16877313-16877332 None:intergenic 45.0%
TTCGCATTAGGTTTGGGAAG+GGG + chr8_2:16877354-16877373 None:intergenic 45.0%
CTTCGCATTAGGTTTGGGAA+GGG + chr8_2:16877355-16877374 None:intergenic 45.0%
TCTTCGCATTAGGTTTGGGA+AGG + chr8_2:16877356-16877375 None:intergenic 45.0%
GACTGTCTTCGCATTAGGTT+TGG + chr8_2:16877361-16877380 None:intergenic 45.0%
CACCGAGTATCTGCAAATAC+TGG - chr8_2:16877607-16877626 Msa1237470:intron 45.0%
!! TCCCTCAAGCTTTGCTATTG+AGG + chr8_2:16877703-16877722 None:intergenic 45.0%
AAAGCTTGAGGGACACAAGA+AGG - chr8_2:16877710-16877729 Msa1237470:intron 45.0%
ACTGGAATGACAATTCCGGA+TGG - chr8_2:16877857-16877876 Msa1237470:CDS 45.0%
TTTATTCTGGCAGCACGGAT+GGG - chr8_2:16877891-16877910 Msa1237470:intron 45.0%
TGGTATGAAGGACACTGTCA+AGG - chr8_2:16878015-16878034 Msa1237470:intron 45.0%
ATGAAGGACACTGTCAAGGT+AGG - chr8_2:16878019-16878038 Msa1237470:intron 45.0%
ATAGCATGGACTTGTCCCTT+AGG + chr8_2:16878191-16878210 None:intergenic 45.0%
CCTTGGCAACAATCATAGCA+TGG + chr8_2:16878205-16878224 None:intergenic 45.0%
CCATGCTATGATTGTTGCCA+AGG - chr8_2:16878202-16878221 Msa1237470:CDS 45.0%
GCTACCCACACATTGCTTTA+TGG - chr8_2:16878257-16878276 Msa1237470:CDS 45.0%
GGTGTAATTTCTGCATGGAG+AGG - chr8_2:16878416-16878435 Msa1237470:CDS 45.0%
! TCTGTTGTTTGCCTAGCTGT+TGG - chr8_2:16878497-16878516 Msa1237470:CDS 45.0%
! CTGTTGTTTGCCTAGCTGTT+GGG - chr8_2:16878498-16878517 Msa1237470:CDS 45.0%
! TGTTGTTTGCCTAGCTGTTG+GGG - chr8_2:16878499-16878518 Msa1237470:CDS 45.0%
GGCTCCAAGATGTTGTATTC+AGG - chr8_2:16878521-16878540 Msa1237470:CDS 45.0%
AGTCACCTCCCTTATCTGTT+GGG - chr8_2:16878760-16878779 Msa1237470:five_prime_UTR 45.0%
TTCATCTGACTGCACCATCA+AGG - chr8_2:16878802-16878821 Msa1237470:five_prime_UTR 45.0%
!! AGGGTGTTGTTACACTCTCT+GGG - chr8_2:16879024-16879043 Msa1237470:five_prime_UTR 45.0%
CCGGCAGAGCAGAATATTAT+AGG + chr8_2:16879071-16879090 None:intergenic 45.0%
GAGGTGAACTGAATTGTCTC+CGG + chr8_2:16879090-16879109 None:intergenic 45.0%
! GGCTTAGTTGATATAGCTCC+AGG - chr8_2:16879264-16879283 Msa1237470:five_prime_UTR 45.0%
TTCTTCACTGGAGACAGAAC+TGG - chr8_2:16879294-16879313 Msa1237470:five_prime_UTR 45.0%
! GTTTGCTGACAGTCTGGAAA+TGG - chr8_2:16879316-16879335 Msa1237470:five_prime_UTR 45.0%
CCACTTTGTCATGACTCAAG+AGG + chr8_2:16879367-16879386 None:intergenic 45.0%
CCTCTTGAGTCATGACAAAG+TGG - chr8_2:16879364-16879383 Msa1237470:five_prime_UTR 45.0%
GCAGGAGAGCAAAATGCAAT+TGG + chr8_2:16879489-16879508 None:intergenic 45.0%
TGCCGATGATCCATGGTAAG+AGG + chr8_2:16876297-16876316 None:intergenic 50.0%
TCGGCAACAATACGTGTTCC+CGG - chr8_2:16876311-16876330 Msa1237470:three_prime_UTR 50.0%
GGGGGTAATCGAGATAACGA+TGG - chr8_2:16876417-16876436 Msa1237470:CDS 50.0%
GTTTCTTCATAGTGCAGCGC+CGG - chr8_2:16877116-16877135 Msa1237470:intron 50.0%
TCTTGTAATGCTGCCAACGC+TGG - chr8_2:16877147-16877166 Msa1237470:intron 50.0%
GATGCAATTTCACCGTGCGA+TGG + chr8_2:16877204-16877223 None:intergenic 50.0%
! AGGCACAGCTCAAGTTGTTG+AGG - chr8_2:16877407-16877426 Msa1237470:intron 50.0%
AGCAAGCACAGAAGTTGCTG+AGG - chr8_2:16877488-16877507 Msa1237470:intron 50.0%
CTTTATTCTGGCAGCACGGA+TGG - chr8_2:16877890-16877909 Msa1237470:intron 50.0%
! GAGGGCCCATGGATTTTTGT+TGG - chr8_2:16877995-16878014 Msa1237470:intron 50.0%
! GCCGCACCTTTTACTCTTGA+TGG - chr8_2:16878164-16878183 Msa1237470:CDS 50.0%
TACACTCTTAGCTGGAGCAG+AGG - chr8_2:16878232-16878251 Msa1237470:CDS 50.0%
GTTGTTTGCCTAGCTGTTGG+GGG - chr8_2:16878500-16878519 Msa1237470:CDS 50.0%
ATGTGTCAAGGTCCCAAACC+TGG + chr8_2:16878703-16878722 None:intergenic 50.0%
CAGTCACCTCCCTTATCTGT+TGG - chr8_2:16878759-16878778 Msa1237470:five_prime_UTR 50.0%
CTTGTCCCAACAGATAAGGG+AGG + chr8_2:16878768-16878787 None:intergenic 50.0%
GATGGTGCAGTCAGATGAAC+CGG + chr8_2:16878801-16878820 None:intergenic 50.0%
! CAAAGCAGGGACTTTGGAAG+TGG - chr8_2:16878838-16878857 Msa1237470:five_prime_UTR 50.0%
!! CAGGGTGTTGTTACACTCTC+TGG - chr8_2:16879023-16879042 Msa1237470:five_prime_UTR 50.0%
CTTACGATGGCAGTTCGTAG+AGG + chr8_2:16879109-16879128 None:intergenic 50.0%
!! GAACTGGTTTGCTGACAGTC+TGG - chr8_2:16879310-16879329 Msa1237470:five_prime_UTR 50.0%
GCTGACAGTCTGGAAATGGT+TGG - chr8_2:16879320-16879339 Msa1237470:five_prime_UTR 50.0%
ATTCCTCTTTCGCTTCCACC+AGG - chr8_2:16879387-16879406 Msa1237470:five_prime_UTR 50.0%
ATTCCTGGTGGAAGCGAAAG+AGG + chr8_2:16879393-16879412 None:intergenic 50.0%
AAGCGGCATTACCCATCGCA+CGG - chr8_2:16877189-16877208 Msa1237470:intron 55.0%
GGATGGGACACTTCGGACAT+GGG - chr8_2:16877907-16877926 Msa1237470:intron 55.0%
TGGGCCCTCACTGATCAAAG+AGG + chr8_2:16877984-16878003 None:intergenic 55.0%
CTTTGATCAGTGAGGGCCCA+TGG - chr8_2:16877984-16878003 Msa1237470:intron 55.0%
CTGACTGCACCATCAAGGTC+TGG - chr8_2:16878807-16878826 Msa1237470:five_prime_UTR 55.0%
GCAGCACGGATGGGACACTT+CGG - chr8_2:16877900-16877919 Msa1237470:intron 60.0%
CGGATGGGACACTTCGGACA+TGG - chr8_2:16877906-16877925 Msa1237470:intron 60.0%
TCTTGGAGCCCCCAACAGCT+AGG + chr8_2:16878511-16878530 None:intergenic 60.0%
CCAGTGAAGAAGAGACCGCC+TGG + chr8_2:16879285-16879304 None:intergenic 60.0%
CCAGGCGGTCTCTTCTTCAC+TGG - chr8_2:16879282-16879301 Msa1237470:five_prime_UTR 60.0%
CGGACATGGGACTGCCGTAC+TGG - chr8_2:16877920-16877939 Msa1237470:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 16876182 16879574 16876182 ID=Msa1237470;Name=Msa1237470
chr8_2 mRNA 16876182 16879574 16876182 ID=Msa1237470-mRNA-1;Parent=Msa1237470;Name=Msa1237470-mRNA-1;_AED=0.08;_eAED=0.08;_QI=836|1|1|1|1|1|7|203|528
chr8_2 exon 16876182 16876532 16876182 ID=Msa1237470-mRNA-1:exon:6318;Parent=Msa1237470-mRNA-1
chr8_2 exon 16876633 16876730 16876633 ID=Msa1237470-mRNA-1:exon:6317;Parent=Msa1237470-mRNA-1
chr8_2 exon 16876873 16877052 16876873 ID=Msa1237470-mRNA-1:exon:6316;Parent=Msa1237470-mRNA-1
chr8_2 exon 16877191 16877343 16877191 ID=Msa1237470-mRNA-1:exon:6315;Parent=Msa1237470-mRNA-1
chr8_2 exon 16877503 16877610 16877503 ID=Msa1237470-mRNA-1:exon:6314;Parent=Msa1237470-mRNA-1
chr8_2 exon 16877720 16877905 16877720 ID=Msa1237470-mRNA-1:exon:6313;Parent=Msa1237470-mRNA-1
chr8_2 exon 16878025 16879574 16878025 ID=Msa1237470-mRNA-1:exon:6312;Parent=Msa1237470-mRNA-1
chr8_2 five_prime_UTR 16878739 16879574 16878739 ID=Msa1237470-mRNA-1:five_prime_utr;Parent=Msa1237470-mRNA-1
chr8_2 CDS 16878025 16878738 16878025 ID=Msa1237470-mRNA-1:cds;Parent=Msa1237470-mRNA-1
chr8_2 CDS 16877720 16877905 16877720 ID=Msa1237470-mRNA-1:cds;Parent=Msa1237470-mRNA-1
chr8_2 CDS 16877503 16877610 16877503 ID=Msa1237470-mRNA-1:cds;Parent=Msa1237470-mRNA-1
chr8_2 CDS 16877191 16877343 16877191 ID=Msa1237470-mRNA-1:cds;Parent=Msa1237470-mRNA-1
chr8_2 CDS 16876873 16877052 16876873 ID=Msa1237470-mRNA-1:cds;Parent=Msa1237470-mRNA-1
chr8_2 CDS 16876633 16876730 16876633 ID=Msa1237470-mRNA-1:cds;Parent=Msa1237470-mRNA-1
chr8_2 CDS 16876385 16876532 16876385 ID=Msa1237470-mRNA-1:cds;Parent=Msa1237470-mRNA-1
chr8_2 three_prime_UTR 16876182 16876384 16876182 ID=Msa1237470-mRNA-1:three_prime_utr;Parent=Msa1237470-mRNA-1
Gene Sequence

>Msa1237470

ATGGATGTGAAAGTGGCAAGGAGTAGTAGAACTGAACAAGTCATCGGGAAAACATGTGTTTATTGGCTCGCTGGGAAATGCAACAGAAATCCTTGTAGGTTTCTTCATAGTGCAGCGCCGGCAACTGCTTCTTGTAATGCTGCCAACGCTGGATATCATAATGCTGCATGGAAGCGGCATTACCCATCGCACGGTGAAATTGCATCTTATCCGTCTTCATGCAGAGCTGATACTGGATATTATAATGCTGCAAAGAAGCACCATTCATCGTATGTGTATGAGAAGCCCCTTACCAAACATAACACGAAGGCTGCATCGTATGTGTATGAGAAGCCCCTTCCCAAACCTAATGCGAAGACAGTCTTGAATAGAAAGATTGGAGATAACAAAGGCACAGCTCAAGTTGTTGAGGCTTCCTTTTCCAAACATAATACGAAGACTGTCTTGAATAGAAAGACTGGAGATAACAAAGCAAGCACAGAAGTTGCTGAGGCTTCCCTTCCCAAACATAATACTGAACCGGTCTTGAATAGAAAGATTGGAGATGACAGAGATGGGACAGAAGTAGATGAAGTTTCTCAGAAGCCTTCACCGAGTATCTGCAAATACTGGGTGAATGACAGTTGTGTTCATGGTGATCAGTGCCAGAATTTACATTCGTGGTTTTATGGTGATGGGTTTTCCTCAATAGCAAAGCTTGAGGGACACAAGAAGCTTATCACTGGAATGACAATTCCGGATGGATCAGACAAACTTTATTCTGGCAGCACGGATGGGACACTTCGGACATGGGACTGCCGTACTGGTCAATGTGTTGATGTAACGAATCTGGGCGCTGAAATTACCTCTTTGATCAGTGAGGGCCCATGGATTTTTGTTGGTATGAAGGACACTGTCAAGGCATGGCATATTTCAACTGCCGCACCTTTTACTCTTGATGGACCTAAGGGACAAGTCCATGCTATGATTGTTGCCAAGGATACTCATACACTCTTAGCTGGAGCAGAGGATGGTGTAATTTCTGCATGGAGAGGCAGCTCCGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTATGTGGCCACACTAAATCTGTTGTTTGCCTAGCTGTTGGGGGCTCCAAGATGTTGTATTCAGGATCCAGGGATCAAACCATTAAGGTTTGGGACCTTGACACATTTGAGTGTACAATGACACTCAATGCACATACAGATGCAGTCACCTCCCTTATCTGTTGGGACAAGTTCTTGTTATCCGGTTCATCTGACTGCACCATCAAGGTCTGGTTTCAAAACAAAGCAGGGACTTTGGAAGTGGCATATTCACACAATGTGGAAAATGGTGTTGTTACACTCTCTGGGATGACTGATCCAGAAAATAAGCCTATAATATTCTGCTCTGCCGGAGACAATTCAGTTCACCTCTACGAACTGCCATCATTTGCAGAGAGGGGTAGATTGTTTGCAAAGCAAGAAGTTGGCTTAGTTGATATAGCTCCAGGCGGTCTCTTCTTCACTGGAGACAGAACTGGTTTGCTGACAGTCTGGAAATGGTTGGAAGAATACAAGGTTGTGGCATCCTCTTGA
Protein sequence

>Msa1237470

MDVKVARSSRTEQVIGKTCVYWLAGKCNRNPCRFLHSAAPATASCNAANAGYHNAAWKRHYPSHGEIASYPSSCRADTGYYNAAKKHHSSYVYEKPLTKHNTKAASYVYEKPLPKPNAKTVLNRKIGDNKGTAQVVEASFSKHNTKTVLNRKTGDNKASTEVAEASLPKHNTEPVLNRKIGDDRDGTEVDEVSQKPSPSICKYWVNDSCVHGDQCQNLHSWFYGDGFSSIAKLEGHKKLITGMTIPDGSDKLYSGSTDGTLRTWDCRTGQCVDVTNLGAEITSLISEGPWIFVGMKDTVKAWHISTAAPFTLDGPKGQVHAMIVAKDTHTLLAGAEDGVISAWRGSSEANSPFKLVASLCGHTKSVVCLAVGGSKMLYSGSRDQTIKVWDLDTFECTMTLNAHTDAVTSLICWDKFLLSGSSDCTIKVWFQNKAGTLEVAYSHNVENGVVTLSGMTDPENKPIIFCSAGDNSVHLYELPSFAERGRLFAKQEVGLVDIAPGGLFFTGDRTGLLTVWKWLEEYKVVASS*