AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1317890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317890 MtrunA17_Chr8g0348461 94.318 528 24 1 1 528 1 522 0.0 1035
Msa1317890 MtrunA17_Chr8g0350811 69.002 471 107 6 86 528 448 907 0.0 648
Msa1317890 MtrunA17_Chr8g0350811 54.943 435 138 11 19 407 17 439 1.74e-134 412
Msa1317890 MtrunA17_Chr6g0474101 53.416 322 146 3 200 521 113 430 2.40e-127 379
Msa1317890 MtrunA17_Chr1g0154301 27.119 295 188 11 229 517 104 377 2.46e-18 87.8
Msa1317890 MtrunA17_Chr4g0034121 25.566 309 198 12 220 517 121 408 8.67e-15 77.0
Msa1317890 MtrunA17_Chr5g0440471 30.732 205 123 8 284 478 204 399 5.86e-14 74.7
Msa1317890 MtrunA17_Chr5g0403011 24.138 232 143 6 317 517 136 365 7.93e-14 73.6
Msa1317890 MtrunA17_Chr1g0185501 26.437 261 133 9 227 432 59 315 1.34e-12 68.9
Msa1317890 MtrunA17_Chr4g0067151 25.455 220 145 7 228 433 111 325 1.80e-12 68.6
Msa1317890 MtrunA17_Chr2g0295791 24.576 236 160 9 290 518 184 408 4.45e-12 68.2
Msa1317890 MtrunA17_Chr8g0381281 26.906 223 127 9 236 429 211 426 6.04e-12 67.8
Msa1317890 MtrunA17_Chr3g0140101 21.222 311 201 11 227 521 78 360 4.43e-11 65.1
Msa1317890 MtrunA17_Chr4g0059501 26.364 220 132 9 236 429 179 394 4.89e-11 64.7
Msa1317890 MtrunA17_Chr5g0414581 25.714 245 131 9 235 429 198 441 7.30e-11 64.3
Msa1317890 MtrunA17_Chr2g0322171 25.105 239 158 7 221 441 37 272 9.42e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317890 AT5G51980.1 47.989 373 175 5 156 521 71 431 2.01e-120 361
Msa1317890 AT5G51980.2 47.989 373 175 5 156 521 71 431 2.01e-120 361
Msa1317890 AT4G25440.2 51.829 328 154 3 200 527 107 430 4.26e-120 360
Msa1317890 AT4G25440.3 51.829 328 154 3 200 527 107 430 4.26e-120 360
Msa1317890 AT4G25440.1 51.829 328 154 3 200 527 107 430 4.26e-120 360
Msa1317890 AT5G49200.1 50.467 321 152 5 200 516 94 411 2.60e-106 324
Msa1317890 AT5G40880.2 48.182 330 167 3 196 524 117 443 3.61e-103 317
Msa1317890 AT5G40880.1 48.182 330 167 3 196 524 146 472 6.49e-103 317
Msa1317890 AT1G49450.1 25.862 290 171 11 265 517 121 403 1.07e-17 86.3
Msa1317890 AT3G50390.1 23.358 274 168 9 281 517 101 369 1.20e-17 86.3
Msa1317890 AT3G18950.1 23.958 288 179 9 265 517 125 407 1.92e-16 82.4
Msa1317890 AT1G47610.1 25.161 310 190 11 223 517 10 292 2.59e-15 77.8
Msa1317890 AT2G26490.1 29.954 217 124 9 236 429 205 416 2.95e-13 72.4
Msa1317890 AT2G26490.1 23.077 338 226 12 190 517 51 364 7.34e-13 71.2
Msa1317890 AT4G15900.1 26.271 236 156 8 290 518 190 414 4.71e-13 72.0
Msa1317890 AT3G49660.1 25.688 218 145 6 228 433 104 316 1.14e-12 69.3
Msa1317890 AT3G16650.1 26.383 235 156 9 290 518 184 407 2.65e-12 69.3
Msa1317890 AT4G02730.1 27.642 246 155 10 204 432 93 332 7.88e-12 67.0
Msa1317890 AT1G24130.1 25.571 219 137 7 236 429 191 408 1.59e-11 66.6
Msa1317890 AT2G22040.1 23.830 235 145 8 230 442 77 299 1.81e-11 65.9

Find 190 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCGTTACTTCAAATTT+AGG 0.088667 8_4:-19473101 Msa1317890:five_prime_UTR
AAAGAGCAGTTTATATTAAA+TGG 0.149034 8_4:-19469918 Msa1317890:three_prime_UTR
TTCATTGTAAACTTTATAAT+TGG 0.150779 8_4:-19472959 Msa1317890:five_prime_UTR
GAGGATACAGTGGCTGATTT+AGG 0.170115 8_4:-19472901 Msa1317890:five_prime_UTR
ACTTATTAGGGTGATGATTT+GGG 0.189118 8_4:-19473050 Msa1317890:five_prime_UTR
TGAATCATCCAATTCTGATA+TGG 0.210558 8_4:-19472677 Msa1317890:five_prime_UTR
ACCCTAAAATTGATCGAAAT+TGG 0.212704 8_4:+19473186 None:intergenic
AAACAATAGAAATACCTTAA+TGG 0.219415 8_4:+19470892 None:intergenic
TACTTATTAGGGTGATGATT+TGG 0.226749 8_4:-19473051 Msa1317890:five_prime_UTR
TGAATCGTCCAATTCTGATA+TGG 0.239835 8_4:-19472723 Msa1317890:five_prime_UTR
GAATAGGGCATTATAAAGTT+TGG 0.255409 8_4:-19472592 Msa1317890:five_prime_UTR
AGTGATGCAACCAGTTTAAA+AGG 0.256880 8_4:+19470992 None:intergenic
GTTTCGTTACTTCAAATTTA+GGG 0.278364 8_4:-19473100 Msa1317890:five_prime_UTR
GATACAGTGAATTGGGGTTT+TGG 0.280610 8_4:-19472769 Msa1317890:five_prime_UTR
CACCGAGTATCTGCAAATAC+TGG 0.296151 8_4:-19471840 Msa1317890:CDS
AGATAACGATGGTAAATTAT+TGG 0.301045 8_4:-19473019 Msa1317890:five_prime_UTR
GTTTACGATTCGCGACATTA+TGG 0.303616 8_4:-19472878 Msa1317890:five_prime_UTR
GACAGTCTTCGTATTATGTT+TGG 0.305087 8_4:+19472008 None:intergenic
GACTGTCTTCGCATTAGGTT+TGG 0.306267 8_4:+19472089 None:intergenic
ATTTAGAGATACAGTGAATT+GGG 0.309672 8_4:-19472776 Msa1317890:five_prime_UTR
CTGTTGTTTGCCTAGCTGTT+GGG 0.314055 8_4:-19470952 Msa1317890:CDS
AGGATACAGTGGCTGATTTA+GGG 0.314921 8_4:-19472900 Msa1317890:five_prime_UTR
TCGGGAAAACATGTGTTTAT+TGG 0.317668 8_4:-19472386 Msa1317890:CDS
TAGGGTGTTGTTACACTCTC+TGG 0.319301 8_4:-19470427 Msa1317890:CDS
CCGGCAGAGCAGAATATTAT+AGG 0.333462 8_4:+19470382 None:intergenic
TGGCTGATCTTGGATGTTAT+TGG 0.338473 8_4:-19472488 Msa1317890:five_prime_UTR
CTGCTGCAATTTGTGTTCCT+TGG 0.340425 8_4:-19472850 Msa1317890:five_prime_UTR
TTAGGTCCATCAAGAGTAAA+AGG 0.343847 8_4:+19471280 None:intergenic
GGATCAGACAAACTTTATTC+TGG 0.347221 8_4:-19471572 Msa1317890:CDS
TTCAAGACTGTCTTCGCATT+AGG 0.358547 8_4:+19472084 None:intergenic
GACCGGTTCAGTATTATGTT+TGG 0.360342 8_4:+19471927 None:intergenic
TCATTACAAACTTTAGAATA+GGG 0.362263 8_4:-19472607 Msa1317890:five_prime_UTR
GAATCATCCAATTCTGATAT+GGG 0.364051 8_4:-19472676 Msa1317890:five_prime_UTR
AACCAGTTTAAAAGGGGAAT+TGG 0.367309 8_4:+19471000 None:intergenic
TCTTCATGCAGAGCTGATAC+TGG 0.367762 8_4:-19472216 Msa1317890:CDS
TGAATAACCCATATCAGAAT+TGG 0.372057 8_4:+19472715 None:intergenic
AATTTAGAGATACAGTGAAT+TGG 0.372154 8_4:-19472777 Msa1317890:five_prime_UTR
TGAAGTAACGAAACAAATAA+AGG 0.373211 8_4:+19473109 None:intergenic
ATCCAGGGATCAAACCATTA+AGG 0.373611 8_4:-19470906 Msa1317890:intron
ACCGGTTCAGTATTATGTTT+GGG 0.381120 8_4:+19471928 None:intergenic
TTCATTACAAACTTTAGAAT+AGG 0.381364 8_4:-19472608 Msa1317890:five_prime_UTR
GGCTCCAAGATGTTGTATTC+AGG 0.381554 8_4:-19470929 Msa1317890:CDS
TCCCTCAAGCTTTGCTATTG+AGG 0.382939 8_4:+19471747 None:intergenic
CCTTCGTGTTATGTTTGGTA+AGG 0.395085 8_4:+19472142 None:intergenic
TGCAGCCTTCGTGTTATGTT+TGG 0.404114 8_4:+19472137 None:intergenic
GAATCGTCCAATTCTGATAT+GGG 0.410260 8_4:-19472722 Msa1317890:five_prime_UTR
TCATTGTAAACTTTATAATT+GGG 0.410791 8_4:-19472958 Msa1317890:five_prime_UTR
TACCTTAATGGTTTGATCCC+TGG 0.415666 8_4:+19470904 None:intergenic
CCGGTCTTGAATAGAAAGAT+TGG 0.418536 8_4:-19471910 Msa1317890:CDS
AACAACTCTCATCGTTCCTT+CGG 0.418701 8_4:-19473238 Msa1317890:five_prime_UTR
ACAGTCTTGAATAGAAAGAT+TGG 0.421505 8_4:-19472072 Msa1317890:CDS
AAAACCACGAATGTAAATTC+TGG 0.421752 8_4:+19471785 None:intergenic
TTCTTCACTGGAGACAGAAC+TGG 0.422568 8_4:-19470156 Msa1317890:CDS
GCAGGAGAGCAAAATGCAAT+TGG 0.424348 8_4:+19469964 None:intergenic
TGGGACAAGTTCTTGTTATC+CGG 0.428190 8_4:-19470671 Msa1317890:CDS
GTTTGCTGACAGTCTGGAAA+TGG 0.431501 8_4:-19470134 Msa1317890:CDS
CTTCGTATTATGTTTGGAAA+AGG 0.435286 8_4:+19472014 None:intergenic
TTCTCATCTTTATCGCTCTC+AGG 0.436846 8_4:-19473214 Msa1317890:five_prime_UTR
GAACTGGTTTGCTGACAGTC+TGG 0.438059 8_4:-19470140 Msa1317890:CDS
ATGTGTTGATGTAACGAATC+TGG 0.438520 8_4:-19471504 Msa1317890:CDS
CTTTATTCTGGCAGCACGGA+TGG 0.439016 8_4:-19471560 Msa1317890:CDS
GATACTCATACACTCTTAGC+TGG 0.440260 8_4:-19471226 Msa1317890:CDS
GTGAATGACAGTTGTGTTCA+TGG 0.441949 8_4:-19471817 Msa1317890:CDS
ACTGTCTTCGCATTAGGTTT+GGG 0.444520 8_4:+19472090 None:intergenic
GGCTTAGTTGATATAGCTCC+AGG 0.445857 8_4:-19470186 Msa1317890:CDS
TTTAAAAGGGGAATTGGCTT+CGG 0.448072 8_4:+19471006 None:intergenic
AGTGCCAGAATTTACATTCG+TGG 0.450873 8_4:-19471789 Msa1317890:CDS
CTTCGTGTTATGTTTGGTAA+GGG 0.452866 8_4:+19472143 None:intergenic
TATCACTGGAATGACAATTC+CGG 0.457711 8_4:-19471597 Msa1317890:CDS
GCATTACAAGAAGCAGTTGC+CGG 0.459171 8_4:+19472312 None:intergenic
ACATGTGTTTATTGGCTCGC+TGG 0.462559 8_4:-19472378 Msa1317890:CDS
TCAAAACAAAGCAGGGACTT+TGG 0.463001 8_4:-19470618 Msa1317890:CDS
GTGATGCAACCAGTTTAAAA+GGG 0.463109 8_4:+19470993 None:intergenic
AATGCAACAGAAATCCTTGT+AGG 0.464299 8_4:-19472353 Msa1317890:CDS
TCTGTTGTTTGCCTAGCTGT+TGG 0.467062 8_4:-19470953 Msa1317890:CDS
CAGTCACCTCCCTTATCTGT+TGG 0.468487 8_4:-19470691 Msa1317890:CDS
GATGGTGCAGTCAGATGAAC+CGG 0.468498 8_4:+19470652 None:intergenic
TCGGCAACAATACGTGTTCC+CGG 0.468909 8_4:-19473136 Msa1317890:five_prime_UTR
TGTTGTTTGCCTAGCTGTTG+GGG 0.470098 8_4:-19470951 Msa1317890:CDS
GAAGGAACGATGAGAGTTGT+TGG 0.476070 8_4:+19473240 None:intergenic
ATAGCATGGACTTGTCCCTT+AGG 0.477981 8_4:+19471262 None:intergenic
TCCCAAACATAATACTGAAC+CGG 0.478214 8_4:-19471929 Msa1317890:CDS
GAACTTGTCCCAACAGATAA+GGG 0.478337 8_4:+19470682 None:intergenic
AGATGTTGTATTCAGGATCC+AGG 0.478981 8_4:-19470922 Msa1317890:CDS
TTCGCATTAGGTTTGGGAAG+GGG 0.484751 8_4:+19472096 None:intergenic
AGGGTGTTGTTACACTCTCT+GGG 0.487705 8_4:-19470426 Msa1317890:CDS
CTTTGATCAGTGAGGGCCCA+TGG 0.488204 8_4:-19471466 Msa1317890:CDS
ATCATAATGCTGCATGGAAG+CGG 0.488251 8_4:-19472275 Msa1317890:CDS
CCAATCTTTCTATTCAAGAC+CGG 0.489613 8_4:+19471910 None:intergenic
GGATCCTGAATACAACATCT+TGG 0.489979 8_4:+19470925 None:intergenic
AGAACTTGTCCCAACAGATA+AGG 0.491353 8_4:+19470681 None:intergenic
CCAGGCGGTCTCTTCTTCAC+TGG 0.491679 8_4:-19470168 Msa1317890:CDS
CATGTGTTTATTGGCTCGCT+GGG 0.491753 8_4:-19472377 Msa1317890:CDS
GTCTGGTTTCAAAACAAAGC+AGG 0.492572 8_4:-19470626 Msa1317890:CDS
TCTTGTAATGCTGCCAACGC+TGG 0.492864 8_4:-19472300 Msa1317890:CDS
TAGGATAAAGTGGCTGATCT+TGG 0.492939 8_4:-19472498 Msa1317890:five_prime_UTR
TAAGAGTGTATGAGTATCCT+TGG 0.493515 8_4:+19471231 None:intergenic
CTGACTGCACCATCAAGGTC+TGG 0.495156 8_4:-19470643 Msa1317890:CDS
TCCTCAATAGCAAAGCTTGA+GGG 0.497866 8_4:-19471748 Msa1317890:CDS
TCTTCGCATTAGGTTTGGGA+AGG 0.502143 8_4:+19472094 None:intergenic
ACTGTCTTGAATAGAAAGAC+TGG 0.503936 8_4:-19471991 Msa1317890:CDS
CCTATAATATTCTGCTCTGC+CGG 0.508251 8_4:-19470382 Msa1317890:CDS
ATCAATCATGGATGTGAAAG+TGG 0.508504 8_4:-19472436 Msa1317890:exon
CGGATGGGACACTTCGGACA+TGG 0.508983 8_4:-19471544 Msa1317890:CDS
TTGTTTGCAAAGCAAGAAGT+TGG 0.511045 8_4:-19470207 Msa1317890:CDS
CTTATTAGGGTGATGATTTG+GGG 0.516447 8_4:-19473049 Msa1317890:five_prime_UTR
CGAAACAAATAAAGGTTCGC+CGG 0.520147 8_4:+19473117 None:intergenic
GGTATTCGATTGTTGTTGGT+AGG 0.522153 8_4:-19472517 Msa1317890:five_prime_UTR
AGTCACCTCCCTTATCTGTT+GGG 0.522835 8_4:-19470690 Msa1317890:CDS
CCATGCTATGATTGTTGCCA+AGG 0.524769 8_4:-19471248 Msa1317890:CDS
TGCCGATGATCCATGGTAAG+AGG 0.525012 8_4:+19473153 None:intergenic
TAAAGTTTGTCTGATCCATC+CGG 0.525387 8_4:+19471578 None:intergenic
ATTTCTCTTTCGCTTCCACC+AGG 0.525997 8_4:-19470063 Msa1317890:three_prime_UTR
TACGATTCAACCTCTTACCA+TGG 0.526022 8_4:-19473163 Msa1317890:five_prime_UTR
AATGACATTGAATAAATAGC+AGG 0.528202 8_4:+19469946 None:intergenic
GTTCAGTATTATGTTTGGGA+AGG 0.528869 8_4:+19471932 None:intergenic
ACCCAGTATTTGCAGATACT+CGG 0.530599 8_4:+19471838 None:intergenic
AAGTATTGTTGAATGATCAA+TGG 0.531099 8_4:+19470024 None:intergenic
ATGCAATTTCACCGTGCGAT+GGG 0.532017 8_4:+19472247 None:intergenic
CTTCGCATTAGGTTTGGGAA+GGG 0.535549 8_4:+19472095 None:intergenic
GTAGAACTGAACAAGTCATC+GGG 0.535669 8_4:-19472404 Msa1317890:CDS
TTCATCTGACTGCACCATCA+AGG 0.538469 8_4:-19470648 Msa1317890:CDS
GTTTCTTCATAGTGCAGCGC+CGG 0.544515 8_4:-19472331 Msa1317890:CDS
TTCAGTATTATGTTTGGGAA+GGG 0.547534 8_4:+19471933 None:intergenic
TCTCATACACATACGATGAA+TGG 0.547953 8_4:+19472169 None:intergenic
CAAAGCAGGGACTTTGGAAG+TGG 0.549468 8_4:-19470612 Msa1317890:CDS
AAGATTGGAGATGACAGAGA+TGG 0.549609 8_4:-19471895 Msa1317890:CDS
TTTACTCTTGATGGACCTAA+GGG 0.550479 8_4:-19471277 Msa1317890:CDS
AAACTGGTTGCATCACTATG+TGG 0.551665 8_4:-19470986 Msa1317890:CDS
TTTAGAGATACAGTGAATTG+GGG 0.555605 8_4:-19472775 Msa1317890:five_prime_UTR
TTCGTGTTATGTTTGGTAAG+GGG 0.560021 8_4:+19472144 None:intergenic
CCAGTGAAGAAGAGACCGCC+TGG 0.560511 8_4:+19470168 None:intergenic
TCTATACAGATTTGCAGAGA+GGG 0.561604 8_4:-19470235 Msa1317890:intron
ACCGAGTATCTGCAAATACT+GGG 0.565524 8_4:-19471839 Msa1317890:CDS
TTCCTCAATAGCAAAGCTTG+AGG 0.567998 8_4:-19471749 Msa1317890:CDS
GTATTGTTGCCGATGATCCA+TGG 0.569294 8_4:+19473146 None:intergenic
GAAACAAATAAAGGTTCGCC+GGG 0.569432 8_4:+19473118 None:intergenic
AACCTCTTACCATGGATCAT+CGG 0.571690 8_4:-19473155 Msa1317890:five_prime_UTR
GAGGTGAACTGAATTGTCTC+CGG 0.576150 8_4:+19470363 None:intergenic
AGTAGAACTGAACAAGTCAT+CGG 0.577794 8_4:-19472405 Msa1317890:CDS
GCAGCACGGATGGGACACTT+CGG 0.578120 8_4:-19471550 Msa1317890:CDS
AGATTGGAGATGACAGAGAT+GGG 0.578565 8_4:-19471894 Msa1317890:CDS
TTTATTCTGGCAGCACGGAT+GGG 0.579379 8_4:-19471559 Msa1317890:CDS
TGTGTTGATGTAACGAATCT+GGG 0.579833 8_4:-19471503 Msa1317890:CDS
GGATGGGACACTTCGGACAT+GGG 0.580368 8_4:-19471543 Msa1317890:CDS
AAAGCTTGAGGGACACAAGA+AGG 0.580476 8_4:-19471737 Msa1317890:intron
ATTACCTCTTTGATCAGTGA+GGG 0.582135 8_4:-19471473 Msa1317890:CDS
GAAATGGTTGGAAGAATACA+AGG 0.586054 8_4:-19470118 Msa1317890:CDS
GTTGGAAGAATACAAGGTTG+TGG 0.589043 8_4:-19470112 Msa1317890:CDS
CCTCTTGAGTCATGACAAAG+TGG 0.592209 8_4:-19470086 Msa1317890:exon
GATGCAATTTCACCGTGCGA+TGG 0.594792 8_4:+19472246 None:intergenic
CTGGATATCATAATGCTGCA+TGG 0.597380 8_4:-19472281 Msa1317890:CDS
AGGCACAGCTCAAGTTGTTG+AGG 0.598388 8_4:-19472040 Msa1317890:CDS
TTGTTGTTGGTAGGATAAAG+TGG 0.600854 8_4:-19472508 Msa1317890:five_prime_UTR
CCACTTTGTCATGACTCAAG+AGG 0.605130 8_4:+19470086 None:intergenic
GTATCAGCTCTGCATGAAGA+CGG 0.605438 8_4:+19472219 None:intergenic
GTTGTTTGCCTAGCTGTTGG+GGG 0.610117 8_4:-19470950 Msa1317890:CDS
TCTGGTTTCAAAACAAAGCA+GGG 0.615231 8_4:-19470625 Msa1317890:CDS
CATCAACACATTGACCAGTA+CGG 0.615787 8_4:+19471516 None:intergenic
CTTACGATGGCAGTTCGTAG+AGG 0.616152 8_4:+19470344 None:intergenic
CAAACTTTATTCTGGCAGCA+CGG 0.616301 8_4:-19471564 Msa1317890:CDS
GCTGACAGTCTGGAAATGGT+TGG 0.617109 8_4:-19470130 Msa1317890:CDS
GATGTTGTATTCAGGATCCA+GGG 0.620953 8_4:-19470921 Msa1317890:CDS
TTATTAGGGTGATGATTTGG+GGG 0.623180 8_4:-19473048 Msa1317890:five_prime_UTR
CGATAAAGATGAGAATCCGA+AGG 0.623639 8_4:+19473222 None:intergenic
AGAAAGATTGGAGATAACAA+AGG 0.628689 8_4:-19472060 Msa1317890:CDS
AGCATTATGATATCCAGCGT+TGG 0.629499 8_4:+19472287 None:intergenic
TGATGCAACCAGTTTAAAAG+GGG 0.631191 8_4:+19470994 None:intergenic
CCTTGGCAACAATCATAGCA+TGG 0.631546 8_4:+19471248 None:intergenic
TACACTCTTAGCTGGAGCAG+AGG 0.636749 8_4:-19471218 Msa1317890:intron
TCATGGATGTGAAAGTGGCA+AGG 0.637601 8_4:-19472431 Msa1317890:CDS
TTGTACACTCAAATGTGTCA+AGG 0.637803 8_4:+19470738 None:intergenic
GCACTATGAAGAAACCTACA+AGG 0.638653 8_4:+19472339 None:intergenic
TGGTATGAAGGACACTGTCA+AGG 0.640615 8_4:-19471435 Msa1317890:intron
AGCAAGCACAGAAGTTGCTG+AGG 0.642199 8_4:-19471959 Msa1317890:CDS
ATCTATACAGATTTGCAGAG+AGG 0.644523 8_4:-19470236 Msa1317890:intron
ACTGGAATGACAATTCCGGA+TGG 0.647752 8_4:-19471593 Msa1317890:CDS
TATTTGCAGATACTCGGTGA+AGG 0.649197 8_4:+19471844 None:intergenic
GGCAAACAACAGATTTAGTG+TGG 0.650060 8_4:+19470963 None:intergenic
AATTACCTCTTTGATCAGTG+AGG 0.650534 8_4:-19471474 Msa1317890:CDS
AGGATGGTGTAATTTCTGCA+TGG 0.659390 8_4:-19471039 Msa1317890:CDS
AGTGGCATATTCACACAATG+TGG 0.660456 8_4:-19470594 Msa1317890:CDS
GGTGTAATTTCTGCATGGAG+AGG 0.661385 8_4:-19471034 Msa1317890:CDS
TGGGCCCTCACTGATCAAAG+AGG 0.666424 8_4:+19471469 None:intergenic
CTATACAGATTTGCAGAGAG+GGG 0.671266 8_4:-19470234 Msa1317890:intron
GAAACCCTAAAATTGAACCA+AGG 0.687005 8_4:+19472833 None:intergenic
TCCATCAAGAGTAAAAGGTG+CGG 0.691279 8_4:+19471285 None:intergenic
CTTGTCCCAACAGATAAGGG+AGG 0.723076 8_4:+19470685 None:intergenic
CCTTACCAAACATAACACGA+AGG 0.752214 8_4:-19472142 Msa1317890:CDS
TTAGTTGATATAGCTCCAGG+CGG 0.764531 8_4:-19470183 Msa1317890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTATTTTACTTATT+AGG - chr8_4:19470100-19470119 Msa1317890:exon 10.0%
!!! TTCTTTTATTTTACTTATTA+GGG - chr8_4:19470101-19470120 Msa1317890:CDS 10.0%
!!! TTTCATTTATTTTACTTATT+AGG - chr8_4:19470349-19470368 Msa1317890:CDS 10.0%
!!! TTCATTTATTTTACTTATTA+GGG - chr8_4:19470350-19470369 Msa1317890:CDS 10.0%
!!! TTTTTTATTCTGATTATTAT+AGG - chr8_4:19472717-19472736 Msa1317890:five_prime_UTR 10.0%
!!! TTTTTATTCTGATTATTATA+GGG - chr8_4:19472718-19472737 Msa1317890:five_prime_UTR 10.0%
!! TTCATTGTAAACTTTATAAT+TGG - chr8_4:19470204-19470223 Msa1317890:CDS 15.0%
!! TCATTGTAAACTTTATAATT+GGG - chr8_4:19470205-19470224 Msa1317890:CDS 15.0%
!!! CAAATTTTTATTTAAATCAC+AGG - chr8_4:19472104-19472123 Msa1317890:CDS 15.0%
!!! AAATTTAGGGTTTCAATTTT+AGG - chr8_4:19470076-19470095 Msa1317890:three_prime_UTR 20.0%
!!! AATTTAGGGTTTCAATTTTA+GGG - chr8_4:19470077-19470096 Msa1317890:three_prime_UTR 20.0%
!!! TTCATTACAAACTTTAGAAT+AGG - chr8_4:19470555-19470574 Msa1317890:intron 20.0%
!!! TCATTACAAACTTTAGAATA+GGG - chr8_4:19470556-19470575 Msa1317890:intron 20.0%
!!! TTTTAGAGTATAATCAATCA+TGG - chr8_4:19470715-19470734 Msa1317890:CDS 20.0%
!! AAAATATACTATACAACTAG+TGG + chr8_4:19472035-19472054 None:intergenic 20.0%
!!! TTTTTATTTAAATCACAGGA+TGG - chr8_4:19472108-19472127 Msa1317890:CDS 20.0%
!! AAACAATAGAAATACCTTAA+TGG + chr8_4:19472274-19472293 None:intergenic 20.0%
!!! ATTAAGGTATTTCTATTGTT+TGG - chr8_4:19472273-19472292 Msa1317890:CDS 20.0%
!! ATTTCTATTGTTTGGAAATA+CGG - chr8_4:19472281-19472300 Msa1317890:CDS 20.0%
!!! TATCTTTTATTGTTTTATCC+AGG - chr8_4:19472395-19472414 Msa1317890:CDS 20.0%
!! ATATTATGTTGAACATCATT+TGG - chr8_4:19472649-19472668 Msa1317890:five_prime_UTR 20.0%
!! TTTGTTTGTAGTGATTAAAT+TGG - chr8_4:19472678-19472697 Msa1317890:five_prime_UTR 20.0%
!!! AATATTATAGGCTTATTTTC+TGG + chr8_4:19472772-19472791 None:intergenic 20.0%
!! AAAGAGCAGTTTATATTAAA+TGG - chr8_4:19473245-19473264 Msa1317890:five_prime_UTR 20.0%
!! TTCCAATTTCGATCAATTTT+AGG - chr8_4:19469975-19469994 Msa1317890:three_prime_UTR 25.0%
!! TCCAATTTCGATCAATTTTA+GGG - chr8_4:19469976-19469995 Msa1317890:three_prime_UTR 25.0%
! TGAAGTAACGAAACAAATAA+AGG + chr8_4:19470057-19470076 None:intergenic 25.0%
! TGTTTCGTTACTTCAAATTT+AGG - chr8_4:19470062-19470081 Msa1317890:three_prime_UTR 25.0%
! GTTTCGTTACTTCAAATTTA+GGG - chr8_4:19470063-19470082 Msa1317890:three_prime_UTR 25.0%
! AGATAACGATGGTAAATTAT+TGG - chr8_4:19470144-19470163 Msa1317890:CDS 25.0%
! AACGAAAAACATTACAGAAT+TGG + chr8_4:19470178-19470197 None:intergenic 25.0%
!! TTTTACTTATTAGGGTTTTC+AGG - chr8_4:19470358-19470377 Msa1317890:CDS 25.0%
! AATTTAGAGATACAGTGAAT+TGG - chr8_4:19470386-19470405 Msa1317890:CDS 25.0%
! ATTTAGAGATACAGTGAATT+GGG - chr8_4:19470387-19470406 Msa1317890:CDS 25.0%
!!! AATTTACATTCGTGGTTTTA+TGG - chr8_4:19471382-19471401 Msa1317890:intron 25.0%
! AAACATTTCTCAAAAACATG+TGG + chr8_4:19471480-19471499 None:intergenic 25.0%
!! TTTGAGAAATGTTTGAAACT+AGG - chr8_4:19471486-19471505 Msa1317890:CDS 25.0%
! CAAAATCAGCTTTCATATTA+TGG + chr8_4:19471819-19471838 None:intergenic 25.0%
! TCTAATCTATGAATCATCTT+TGG - chr8_4:19472306-19472325 Msa1317890:CDS 25.0%
!!! TTTATTGTTTTATCCAGGTT+TGG - chr8_4:19472400-19472419 Msa1317890:CDS 25.0%
!!! TTATTGTTTTATCCAGGTTT+GGG - chr8_4:19472401-19472420 Msa1317890:CDS 25.0%
! TTTGTAGTGATTAAATTGGT+AGG - chr8_4:19472682-19472701 Msa1317890:five_prime_UTR 25.0%
!! AAAAATAAATTGATTCCTGG+TGG + chr8_4:19473118-19473137 None:intergenic 25.0%
!! GGAAAAAATAAATTGATTCC+TGG + chr8_4:19473121-19473140 None:intergenic 25.0%
!! AAGTATTGTTGAATGATCAA+TGG + chr8_4:19473142-19473161 None:intergenic 25.0%
! AATGACATTGAATAAATAGC+AGG + chr8_4:19473220-19473239 None:intergenic 25.0%
ACCCTAAAATTGATCGAAAT+TGG + chr8_4:19469980-19469999 None:intergenic 30.0%
TACTTATTAGGGTGATGATT+TGG - chr8_4:19470112-19470131 Msa1317890:CDS 30.0%
ACTTATTAGGGTGATGATTT+GGG - chr8_4:19470113-19470132 Msa1317890:CDS 30.0%
GAAAAACATTACAGAATTGG+AGG + chr8_4:19470175-19470194 None:intergenic 30.0%
! TATTCAACATCTTTTGCATG+AGG - chr8_4:19470243-19470262 Msa1317890:intron 30.0%
! TGTTCCTTGGTTCAATTTTA+GGG - chr8_4:19470326-19470345 Msa1317890:intron 30.0%
TTTAGAGATACAGTGAATTG+GGG - chr8_4:19470388-19470407 Msa1317890:CDS 30.0%
TGAATAACCCATATCAGAAT+TGG + chr8_4:19470451-19470470 None:intergenic 30.0%
TGAATCATCCAATTCTGATA+TGG - chr8_4:19470486-19470505 Msa1317890:intron 30.0%
GAATCATCCAATTCTGATAT+GGG - chr8_4:19470487-19470506 Msa1317890:intron 30.0%
! GAATAGGGCATTATAAAGTT+TGG - chr8_4:19470571-19470590 Msa1317890:intron 30.0%
! GTAATGAACAATTTTGCATG+AGG - chr8_4:19470593-19470612 Msa1317890:CDS 30.0%
AACAATCGAATACCAAAAAC+AGG + chr8_4:19470640-19470659 None:intergenic 30.0%
! TTTTGGTATTCGATTGTTGT+TGG - chr8_4:19470642-19470661 Msa1317890:CDS 30.0%
ACAGTCTTGAATAGAAAGAT+TGG - chr8_4:19471091-19471110 Msa1317890:intron 30.0%
AGAAAGATTGGAGATAACAA+AGG - chr8_4:19471103-19471122 Msa1317890:intron 30.0%
CTTCGTATTATGTTTGGAAA+AGG + chr8_4:19471152-19471171 None:intergenic 30.0%
TTCAGTATTATGTTTGGGAA+GGG + chr8_4:19471233-19471252 None:intergenic 30.0%
AAAACCACGAATGTAAATTC+TGG + chr8_4:19471381-19471400 None:intergenic 30.0%
! ATTTTTGAACAGCTTATCAC+TGG - chr8_4:19471552-19471571 Msa1317890:CDS 30.0%
TCATACCAACAAAAATCCAT+GGG + chr8_4:19471716-19471735 None:intergenic 30.0%
TTCATACCAACAAAAATCCA+TGG + chr8_4:19471717-19471736 None:intergenic 30.0%
! ATGGATTTTTGTTGGTATGA+AGG - chr8_4:19471716-19471735 Msa1317890:intron 30.0%
AATCTATGAATCATCTTTGG+TGG - chr8_4:19472309-19472328 Msa1317890:CDS 30.0%
AAGTTTACATAACAACCTGA+TGG + chr8_4:19472862-19472881 None:intergenic 30.0%
CTTGAAATGTAATCTTGAAC+TGG - chr8_4:19472879-19472898 Msa1317890:five_prime_UTR 30.0%
CTTATTAGGGTGATGATTTG+GGG - chr8_4:19470114-19470133 Msa1317890:CDS 35.0%
! TTATTAGGGTGATGATTTGG+GGG - chr8_4:19470115-19470134 Msa1317890:CDS 35.0%
! GTGTTCCTTGGTTCAATTTT+AGG - chr8_4:19470325-19470344 Msa1317890:intron 35.0%
GAAACCCTAAAATTGAACCA+AGG + chr8_4:19470333-19470352 None:intergenic 35.0%
! ATACAGTGAATTGGGGTTTT+GGG - chr8_4:19470395-19470414 Msa1317890:CDS 35.0%
TGAATCGTCCAATTCTGATA+TGG - chr8_4:19470440-19470459 Msa1317890:intron 35.0%
GAATCGTCCAATTCTGATAT+GGG - chr8_4:19470441-19470460 Msa1317890:intron 35.0%
GCAAAAACCCATATCAGAAT+TGG + chr8_4:19470497-19470516 None:intergenic 35.0%
! TCTGATATGGGTTTTTGCTA+TGG - chr8_4:19470499-19470518 Msa1317890:intron 35.0%
! TGTTCTACTCTTCCTGTTTT+TGG - chr8_4:19470625-19470644 Msa1317890:CDS 35.0%
! TTGTTGTTGGTAGGATAAAG+TGG - chr8_4:19470655-19470674 Msa1317890:CDS 35.0%
ATCAATCATGGATGTGAAAG+TGG - chr8_4:19470727-19470746 Msa1317890:CDS 35.0%
AGTAGAACTGAACAAGTCAT+CGG - chr8_4:19470758-19470777 Msa1317890:intron 35.0%
TCGGGAAAACATGTGTTTAT+TGG - chr8_4:19470777-19470796 Msa1317890:intron 35.0%
AATGCAACAGAAATCCTTGT+AGG - chr8_4:19470810-19470829 Msa1317890:intron 35.0%
TCTCATACACATACGATGAA+TGG + chr8_4:19470997-19471016 None:intergenic 35.0%
TTCGTGTTATGTTTGGTAAG+GGG + chr8_4:19471022-19471041 None:intergenic 35.0%
CTTCGTGTTATGTTTGGTAA+GGG + chr8_4:19471023-19471042 None:intergenic 35.0%
GACAGTCTTCGTATTATGTT+TGG + chr8_4:19471158-19471177 None:intergenic 35.0%
ACTGTCTTGAATAGAAAGAC+TGG - chr8_4:19471172-19471191 Msa1317890:intron 35.0%
GTTCAGTATTATGTTTGGGA+AGG + chr8_4:19471234-19471253 None:intergenic 35.0%
TCCCAAACATAATACTGAAC+CGG - chr8_4:19471234-19471253 Msa1317890:CDS 35.0%
! ACCGGTTCAGTATTATGTTT+GGG + chr8_4:19471238-19471257 None:intergenic 35.0%
CCAATCTTTCTATTCAAGAC+CGG + chr8_4:19471094-19471113 None:intergenic 35.0%
!!! ATTCGTGGTTTTATGGTGAT+GGG - chr8_4:19471389-19471408 Msa1317890:intron 35.0%
TATCACTGGAATGACAATTC+CGG - chr8_4:19471566-19471585 Msa1317890:CDS 35.0%
TAAAGTTTGTCTGATCCATC+CGG + chr8_4:19471588-19471607 None:intergenic 35.0%
GGATCAGACAAACTTTATTC+TGG - chr8_4:19471591-19471610 Msa1317890:CDS 35.0%
! ATGTGTTGATGTAACGAATC+TGG - chr8_4:19471659-19471678 Msa1317890:intron 35.0%
! TGTGTTGATGTAACGAATCT+GGG - chr8_4:19471660-19471679 Msa1317890:intron 35.0%
AATTACCTCTTTGATCAGTG+AGG - chr8_4:19471689-19471708 Msa1317890:intron 35.0%
ATTACCTCTTTGATCAGTGA+GGG - chr8_4:19471690-19471709 Msa1317890:intron 35.0%
!! GAAAGCTGATTTTGTCATTG+TGG - chr8_4:19471825-19471844 Msa1317890:CDS 35.0%
TGTCATTGTGGTATTTGTGA+AGG - chr8_4:19471837-19471856 Msa1317890:CDS 35.0%
TTAGGTCCATCAAGAGTAAA+AGG + chr8_4:19471886-19471905 None:intergenic 35.0%
!! TTTTACTCTTGATGGACCTA+AGG - chr8_4:19471885-19471904 Msa1317890:CDS 35.0%
! TTTACTCTTGATGGACCTAA+GGG - chr8_4:19471886-19471905 Msa1317890:CDS 35.0%
! TAAGAGTGTATGAGTATCCT+TGG + chr8_4:19471935-19471954 None:intergenic 35.0%
ACAACCATAAAGCAATGTGT+GGG + chr8_4:19471977-19471996 None:intergenic 35.0%
AACAACCATAAAGCAATGTG+TGG + chr8_4:19471978-19471997 None:intergenic 35.0%
! TTTAAAAGGGGAATTGGCTT+CGG + chr8_4:19472160-19472179 None:intergenic 35.0%
AACCAGTTTAAAAGGGGAAT+TGG + chr8_4:19472166-19472185 None:intergenic 35.0%
TGATGCAACCAGTTTAAAAG+GGG + chr8_4:19472172-19472191 None:intergenic 35.0%
GTGATGCAACCAGTTTAAAA+GGG + chr8_4:19472173-19472192 None:intergenic 35.0%
AGTGATGCAACCAGTTTAAA+AGG + chr8_4:19472174-19472193 None:intergenic 35.0%
TTGTACACTCAAATGTGTCA+AGG + chr8_4:19472428-19472447 None:intergenic 35.0%
! TCTGGTTTCAAAACAAAGCA+GGG - chr8_4:19472538-19472557 Msa1317890:five_prime_UTR 35.0%
GTAGTGATTAAATTGGTAGG+AGG - chr8_4:19472685-19472704 Msa1317890:five_prime_UTR 35.0%
GGTAGCAAATTTACTTACGA+TGG + chr8_4:19472835-19472854 None:intergenic 35.0%
ATCTATACAGATTTGCAGAG+AGG - chr8_4:19472927-19472946 Msa1317890:five_prime_UTR 35.0%
TCTATACAGATTTGCAGAGA+GGG - chr8_4:19472928-19472947 Msa1317890:five_prime_UTR 35.0%
TTGTTTGCAAAGCAAGAAGT+TGG - chr8_4:19472956-19472975 Msa1317890:five_prime_UTR 35.0%
GAAATGGTTGGAAGAATACA+AGG - chr8_4:19473045-19473064 Msa1317890:five_prime_UTR 35.0%
AACAACTCTCATCGTTCCTT+CGG - chr8_4:19469925-19469944 Msa1317890:three_prime_UTR 40.0%
CGATAAAGATGAGAATCCGA+AGG + chr8_4:19469944-19469963 None:intergenic 40.0%
TTCTCATCTTTATCGCTCTC+AGG - chr8_4:19469949-19469968 Msa1317890:three_prime_UTR 40.0%
TACGATTCAACCTCTTACCA+TGG - chr8_4:19470000-19470019 Msa1317890:three_prime_UTR 40.0%
AACCTCTTACCATGGATCAT+CGG - chr8_4:19470008-19470027 Msa1317890:three_prime_UTR 40.0%
GAAACAAATAAAGGTTCGCC+GGG + chr8_4:19470048-19470067 None:intergenic 40.0%
CGAAACAAATAAAGGTTCGC+CGG + chr8_4:19470049-19470068 None:intergenic 40.0%
! TCTTTTGCATGAGGATACAG+TGG - chr8_4:19470252-19470271 Msa1317890:intron 40.0%
! AGGATACAGTGGCTGATTTA+GGG - chr8_4:19470263-19470282 Msa1317890:intron 40.0%
GTTTACGATTCGCGACATTA+TGG - chr8_4:19470285-19470304 Msa1317890:intron 40.0%
! GATACAGTGAATTGGGGTTT+TGG - chr8_4:19470394-19470413 Msa1317890:CDS 40.0%
! GGTATTCGATTGTTGTTGGT+AGG - chr8_4:19470646-19470665 Msa1317890:CDS 40.0%
TAGGATAAAGTGGCTGATCT+TGG - chr8_4:19470665-19470684 Msa1317890:CDS 40.0%
TGGCTGATCTTGGATGTTAT+TGG - chr8_4:19470675-19470694 Msa1317890:CDS 40.0%
GTAGAACTGAACAAGTCATC+GGG - chr8_4:19470759-19470778 Msa1317890:intron 40.0%
GCACTATGAAGAAACCTACA+AGG + chr8_4:19470827-19470846 None:intergenic 40.0%
AGCATTATGATATCCAGCGT+TGG + chr8_4:19470879-19470898 None:intergenic 40.0%
CTGGATATCATAATGCTGCA+TGG - chr8_4:19470882-19470901 Msa1317890:intron 40.0%
ATCATAATGCTGCATGGAAG+CGG - chr8_4:19470888-19470907 Msa1317890:intron 40.0%
CCTTCGTGTTATGTTTGGTA+AGG + chr8_4:19471024-19471043 None:intergenic 40.0%
CCTTACCAAACATAACACGA+AGG - chr8_4:19471021-19471040 Msa1317890:CDS 40.0%
ACTGTCTTCGCATTAGGTTT+GGG + chr8_4:19471076-19471095 None:intergenic 40.0%
TTCAAGACTGTCTTCGCATT+AGG + chr8_4:19471082-19471101 None:intergenic 40.0%
! GACCGGTTCAGTATTATGTT+TGG + chr8_4:19471239-19471258 None:intergenic 40.0%
CCGGTCTTGAATAGAAAGAT+TGG - chr8_4:19471253-19471272 Msa1317890:CDS 40.0%
AAGATTGGAGATGACAGAGA+TGG - chr8_4:19471268-19471287 Msa1317890:CDS 40.0%
AGATTGGAGATGACAGAGAT+GGG - chr8_4:19471269-19471288 Msa1317890:CDS 40.0%
! TATTTGCAGATACTCGGTGA+AGG + chr8_4:19471322-19471341 None:intergenic 40.0%
ACCGAGTATCTGCAAATACT+GGG - chr8_4:19471324-19471343 Msa1317890:intron 40.0%
ACCCAGTATTTGCAGATACT+CGG + chr8_4:19471328-19471347 None:intergenic 40.0%
GTGAATGACAGTTGTGTTCA+TGG - chr8_4:19471346-19471365 Msa1317890:intron 40.0%
AGTGCCAGAATTTACATTCG+TGG - chr8_4:19471374-19471393 Msa1317890:intron 40.0%
!!! CATTCGTGGTTTTATGGTGA+TGG - chr8_4:19471388-19471407 Msa1317890:intron 40.0%
TTCCTCAATAGCAAAGCTTG+AGG - chr8_4:19471414-19471433 Msa1317890:intron 40.0%
TCCTCAATAGCAAAGCTTGA+GGG - chr8_4:19471415-19471434 Msa1317890:intron 40.0%
CAAACTTTATTCTGGCAGCA+CGG - chr8_4:19471599-19471618 Msa1317890:CDS 40.0%
CATCAACACATTGACCAGTA+CGG + chr8_4:19471650-19471669 None:intergenic 40.0%
TTGTGGTATTTGTGAAGGCA+TGG - chr8_4:19471842-19471861 Msa1317890:CDS 40.0%
TCCATCAAGAGTAAAAGGTG+CGG + chr8_4:19471881-19471900 None:intergenic 40.0%
GATACTCATACACTCTTAGC+TGG - chr8_4:19471937-19471956 Msa1317890:CDS 40.0%
AGGATGGTGTAATTTCTGCA+TGG - chr8_4:19472124-19472143 Msa1317890:CDS 40.0%
! AGCCAATTCCCCTTTTAAAC+TGG - chr8_4:19472161-19472180 Msa1317890:CDS 40.0%
AAACTGGTTGCATCACTATG+TGG - chr8_4:19472177-19472196 Msa1317890:CDS 40.0%
GGCAAACAACAGATTTAGTG+TGG + chr8_4:19472203-19472222 None:intergenic 40.0%
GGATCCTGAATACAACATCT+TGG + chr8_4:19472241-19472260 None:intergenic 40.0%
AGATGTTGTATTCAGGATCC+AGG - chr8_4:19472241-19472260 Msa1317890:CDS 40.0%
GATGTTGTATTCAGGATCCA+GGG - chr8_4:19472242-19472261 Msa1317890:CDS 40.0%
ATCCAGGGATCAAACCATTA+AGG - chr8_4:19472257-19472276 Msa1317890:CDS 40.0%
TACCTTAATGGTTTGATCCC+TGG + chr8_4:19472262-19472281 None:intergenic 40.0%
GAACTTGTCCCAACAGATAA+GGG + chr8_4:19472484-19472503 None:intergenic 40.0%
AGAACTTGTCCCAACAGATA+AGG + chr8_4:19472485-19472504 None:intergenic 40.0%
! TGGGACAAGTTCTTGTTATC+CGG - chr8_4:19472492-19472511 Msa1317890:five_prime_UTR 40.0%
!!! GTTTTGAAACCAGACCTTGA+TGG + chr8_4:19472532-19472551 None:intergenic 40.0%
! GTCTGGTTTCAAAACAAAGC+AGG - chr8_4:19472537-19472556 Msa1317890:five_prime_UTR 40.0%
TCAAAACAAAGCAGGGACTT+TGG - chr8_4:19472545-19472564 Msa1317890:five_prime_UTR 40.0%
AGTGGCATATTCACACAATG+TGG - chr8_4:19472569-19472588 Msa1317890:five_prime_UTR 40.0%
CCTATAATATTCTGCTCTGC+CGG - chr8_4:19472781-19472800 Msa1317890:five_prime_UTR 40.0%
!! AATTTGCTACCATCACCATC+AGG - chr8_4:19472844-19472863 Msa1317890:five_prime_UTR 40.0%
! ACATAACAACCTGATGGTGA+TGG + chr8_4:19472856-19472875 None:intergenic 40.0%
CTATACAGATTTGCAGAGAG+GGG - chr8_4:19472929-19472948 Msa1317890:five_prime_UTR 40.0%
! TTAGTTGATATAGCTCCAGG+CGG - chr8_4:19472980-19472999 Msa1317890:five_prime_UTR 40.0%
GTTGGAAGAATACAAGGTTG+TGG - chr8_4:19473051-19473070 Msa1317890:five_prime_UTR 40.0%
GAAGGAACGATGAGAGTTGT+TGG + chr8_4:19469926-19469945 None:intergenic 45.0%
GTATTGTTGCCGATGATCCA+TGG + chr8_4:19470020-19470039 None:intergenic 45.0%
! GAGGATACAGTGGCTGATTT+AGG - chr8_4:19470262-19470281 Msa1317890:intron 45.0%
CTGCTGCAATTTGTGTTCCT+TGG - chr8_4:19470313-19470332 Msa1317890:intron 45.0%
TCATGGATGTGAAAGTGGCA+AGG - chr8_4:19470732-19470751 Msa1317890:CDS 45.0%
!! ACATGTGTTTATTGGCTCGC+TGG - chr8_4:19470785-19470804 Msa1317890:intron 45.0%
!! CATGTGTTTATTGGCTCGCT+GGG - chr8_4:19470786-19470805 Msa1317890:intron 45.0%
GCATTACAAGAAGCAGTTGC+CGG + chr8_4:19470854-19470873 None:intergenic 45.0%
ATGCAATTTCACCGTGCGAT+GGG + chr8_4:19470919-19470938 None:intergenic 45.0%
GTATCAGCTCTGCATGAAGA+CGG + chr8_4:19470947-19470966 None:intergenic 45.0%
TCTTCATGCAGAGCTGATAC+TGG - chr8_4:19470947-19470966 Msa1317890:CDS 45.0%
TGCAGCCTTCGTGTTATGTT+TGG + chr8_4:19471029-19471048 None:intergenic 45.0%
TTCGCATTAGGTTTGGGAAG+GGG + chr8_4:19471070-19471089 None:intergenic 45.0%
CTTCGCATTAGGTTTGGGAA+GGG + chr8_4:19471071-19471090 None:intergenic 45.0%
TCTTCGCATTAGGTTTGGGA+AGG + chr8_4:19471072-19471091 None:intergenic 45.0%
GACTGTCTTCGCATTAGGTT+TGG + chr8_4:19471077-19471096 None:intergenic 45.0%
CACCGAGTATCTGCAAATAC+TGG - chr8_4:19471323-19471342 Msa1317890:intron 45.0%
!! TCCCTCAAGCTTTGCTATTG+AGG + chr8_4:19471419-19471438 None:intergenic 45.0%
AAAGCTTGAGGGACACAAGA+AGG - chr8_4:19471426-19471445 Msa1317890:intron 45.0%
ACTGGAATGACAATTCCGGA+TGG - chr8_4:19471570-19471589 Msa1317890:CDS 45.0%
TTTATTCTGGCAGCACGGAT+GGG - chr8_4:19471604-19471623 Msa1317890:intron 45.0%
TGGTATGAAGGACACTGTCA+AGG - chr8_4:19471728-19471747 Msa1317890:intron 45.0%
ATGAAGGACACTGTCAAGGT+AGG - chr8_4:19471732-19471751 Msa1317890:intron 45.0%
ATAGCATGGACTTGTCCCTT+AGG + chr8_4:19471904-19471923 None:intergenic 45.0%
CCTTGGCAACAATCATAGCA+TGG + chr8_4:19471918-19471937 None:intergenic 45.0%
CCATGCTATGATTGTTGCCA+AGG - chr8_4:19471915-19471934 Msa1317890:CDS 45.0%
GCTACCCACACATTGCTTTA+TGG - chr8_4:19471970-19471989 Msa1317890:CDS 45.0%
GGTGTAATTTCTGCATGGAG+AGG - chr8_4:19472129-19472148 Msa1317890:CDS 45.0%
! TCTGTTGTTTGCCTAGCTGT+TGG - chr8_4:19472210-19472229 Msa1317890:CDS 45.0%
! CTGTTGTTTGCCTAGCTGTT+GGG - chr8_4:19472211-19472230 Msa1317890:CDS 45.0%
! TGTTGTTTGCCTAGCTGTTG+GGG - chr8_4:19472212-19472231 Msa1317890:CDS 45.0%
GGCTCCAAGATGTTGTATTC+AGG - chr8_4:19472234-19472253 Msa1317890:CDS 45.0%
AGTCACCTCCCTTATCTGTT+GGG - chr8_4:19472473-19472492 Msa1317890:five_prime_UTR 45.0%
TTCATCTGACTGCACCATCA+AGG - chr8_4:19472515-19472534 Msa1317890:five_prime_UTR 45.0%
!! TAGGGTGTTGTTACACTCTC+TGG - chr8_4:19472736-19472755 Msa1317890:five_prime_UTR 45.0%
!! AGGGTGTTGTTACACTCTCT+GGG - chr8_4:19472737-19472756 Msa1317890:five_prime_UTR 45.0%
CCGGCAGAGCAGAATATTAT+AGG + chr8_4:19472784-19472803 None:intergenic 45.0%
GAGGTGAACTGAATTGTCTC+CGG + chr8_4:19472803-19472822 None:intergenic 45.0%
! GGCTTAGTTGATATAGCTCC+AGG - chr8_4:19472977-19472996 Msa1317890:five_prime_UTR 45.0%
TTCTTCACTGGAGACAGAAC+TGG - chr8_4:19473007-19473026 Msa1317890:five_prime_UTR 45.0%
! GTTTGCTGACAGTCTGGAAA+TGG - chr8_4:19473029-19473048 Msa1317890:five_prime_UTR 45.0%
CCACTTTGTCATGACTCAAG+AGG + chr8_4:19473080-19473099 None:intergenic 45.0%
CCTCTTGAGTCATGACAAAG+TGG - chr8_4:19473077-19473096 Msa1317890:five_prime_UTR 45.0%
ATTTCTCTTTCGCTTCCACC+AGG - chr8_4:19473100-19473119 Msa1317890:five_prime_UTR 45.0%
GCAGGAGAGCAAAATGCAAT+TGG + chr8_4:19473202-19473221 None:intergenic 45.0%
TGCCGATGATCCATGGTAAG+AGG + chr8_4:19470013-19470032 None:intergenic 50.0%
TCGGCAACAATACGTGTTCC+CGG - chr8_4:19470027-19470046 Msa1317890:three_prime_UTR 50.0%
GGGGGTAATCGAGATAACGA+TGG - chr8_4:19470133-19470152 Msa1317890:CDS 50.0%
GTTTCTTCATAGTGCAGCGC+CGG - chr8_4:19470832-19470851 Msa1317890:intron 50.0%
TCTTGTAATGCTGCCAACGC+TGG - chr8_4:19470863-19470882 Msa1317890:intron 50.0%
GATGCAATTTCACCGTGCGA+TGG + chr8_4:19470920-19470939 None:intergenic 50.0%
! AGGCACAGCTCAAGTTGTTG+AGG - chr8_4:19471123-19471142 Msa1317890:intron 50.0%
AGCAAGCACAGAAGTTGCTG+AGG - chr8_4:19471204-19471223 Msa1317890:intron 50.0%
CTTTATTCTGGCAGCACGGA+TGG - chr8_4:19471603-19471622 Msa1317890:intron 50.0%
! GAGGGCCCATGGATTTTTGT+TGG - chr8_4:19471708-19471727 Msa1317890:intron 50.0%
! GCCGCACCTTTTACTCTTGA+TGG - chr8_4:19471877-19471896 Msa1317890:CDS 50.0%
TACACTCTTAGCTGGAGCAG+AGG - chr8_4:19471945-19471964 Msa1317890:CDS 50.0%
GTTGTTTGCCTAGCTGTTGG+GGG - chr8_4:19472213-19472232 Msa1317890:CDS 50.0%
ATGTGTCAAGGTCCCAAACC+TGG + chr8_4:19472416-19472435 None:intergenic 50.0%
CAGTCACCTCCCTTATCTGT+TGG - chr8_4:19472472-19472491 Msa1317890:five_prime_UTR 50.0%
CTTGTCCCAACAGATAAGGG+AGG + chr8_4:19472481-19472500 None:intergenic 50.0%
GATGGTGCAGTCAGATGAAC+CGG + chr8_4:19472514-19472533 None:intergenic 50.0%
! CAAAGCAGGGACTTTGGAAG+TGG - chr8_4:19472551-19472570 Msa1317890:five_prime_UTR 50.0%
CTTACGATGGCAGTTCGTAG+AGG + chr8_4:19472822-19472841 None:intergenic 50.0%
!! GAACTGGTTTGCTGACAGTC+TGG - chr8_4:19473023-19473042 Msa1317890:five_prime_UTR 50.0%
GCTGACAGTCTGGAAATGGT+TGG - chr8_4:19473033-19473052 Msa1317890:five_prime_UTR 50.0%
AAGCGGCATTACCCATCGCA+CGG - chr8_4:19470905-19470924 Msa1317890:intron 55.0%
GGATGGGACACTTCGGACAT+GGG - chr8_4:19471620-19471639 Msa1317890:intron 55.0%
TGGGCCCTCACTGATCAAAG+AGG + chr8_4:19471697-19471716 None:intergenic 55.0%
CTTTGATCAGTGAGGGCCCA+TGG - chr8_4:19471697-19471716 Msa1317890:intron 55.0%
CTGACTGCACCATCAAGGTC+TGG - chr8_4:19472520-19472539 Msa1317890:five_prime_UTR 55.0%
GCAGCACGGATGGGACACTT+CGG - chr8_4:19471613-19471632 Msa1317890:intron 60.0%
CGGATGGGACACTTCGGACA+TGG - chr8_4:19471619-19471638 Msa1317890:intron 60.0%
TCTTGGAGCCCCCAACAGCT+AGG + chr8_4:19472224-19472243 None:intergenic 60.0%
CCAGTGAAGAAGAGACCGCC+TGG + chr8_4:19472998-19473017 None:intergenic 60.0%
CCAGGCGGTCTCTTCTTCAC+TGG - chr8_4:19472995-19473014 Msa1317890:five_prime_UTR 60.0%
CGGACATGGGACTGCCGTAC+TGG - chr8_4:19471633-19471652 Msa1317890:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 19469898 19473287 19469898 ID=Msa1317890;Name=Msa1317890
chr8_4 mRNA 19469898 19473287 19469898 ID=Msa1317890-mRNA-1;Parent=Msa1317890;Name=Msa1317890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=836|1|1|1|1|1|7|203|528
chr8_4 exon 19469898 19470248 19469898 ID=Msa1317890-mRNA-1:exon:7182;Parent=Msa1317890-mRNA-1
chr8_4 exon 19470349 19470446 19470349 ID=Msa1317890-mRNA-1:exon:7181;Parent=Msa1317890-mRNA-1
chr8_4 exon 19470589 19470768 19470589 ID=Msa1317890-mRNA-1:exon:7180;Parent=Msa1317890-mRNA-1
chr8_4 exon 19470907 19471059 19470907 ID=Msa1317890-mRNA-1:exon:7179;Parent=Msa1317890-mRNA-1
chr8_4 exon 19471219 19471326 19471219 ID=Msa1317890-mRNA-1:exon:7178;Parent=Msa1317890-mRNA-1
chr8_4 exon 19471436 19471621 19471436 ID=Msa1317890-mRNA-1:exon:7177;Parent=Msa1317890-mRNA-1
chr8_4 exon 19471738 19473287 19471738 ID=Msa1317890-mRNA-1:exon:7176;Parent=Msa1317890-mRNA-1
chr8_4 five_prime_UTR 19472452 19473287 19472452 ID=Msa1317890-mRNA-1:five_prime_utr;Parent=Msa1317890-mRNA-1
chr8_4 CDS 19471738 19472451 19471738 ID=Msa1317890-mRNA-1:cds;Parent=Msa1317890-mRNA-1
chr8_4 CDS 19471436 19471621 19471436 ID=Msa1317890-mRNA-1:cds;Parent=Msa1317890-mRNA-1
chr8_4 CDS 19471219 19471326 19471219 ID=Msa1317890-mRNA-1:cds;Parent=Msa1317890-mRNA-1
chr8_4 CDS 19470907 19471059 19470907 ID=Msa1317890-mRNA-1:cds;Parent=Msa1317890-mRNA-1
chr8_4 CDS 19470589 19470768 19470589 ID=Msa1317890-mRNA-1:cds;Parent=Msa1317890-mRNA-1
chr8_4 CDS 19470349 19470446 19470349 ID=Msa1317890-mRNA-1:cds;Parent=Msa1317890-mRNA-1
chr8_4 CDS 19470101 19470248 19470101 ID=Msa1317890-mRNA-1:cds;Parent=Msa1317890-mRNA-1
chr8_4 three_prime_UTR 19469898 19470100 19469898 ID=Msa1317890-mRNA-1:three_prime_utr;Parent=Msa1317890-mRNA-1
Gene Sequence

>Msa1317890

ATGGATGTGAAAGTGGCAAGGAGTAGTAGAACTGAACAAGTCATCGGGAAAACATGTGTTTATTGGCTCGCTGGGAAATGCAACAGAAATCCTTGTAGGTTTCTTCATAGTGCAGCGCCGGCAACTGCTTCTTGTAATGCTGCCAACGCTGGATATCATAATGCTGCATGGAAGCGGCATTACCCATCGCACGGTGAAATTGCATCTTATCCGTCTTCATGCAGAGCTGATACTGGATATTATAATGCTGCAAAGAAGCACCATTCATCGTATGTGTATGAGAAGCCCCTTACCAAACATAACACGAAGGCTGCATCGTATGTGTATGAGAAGCCCCTTCCCAAACCTAATGCGAAGACAGTCTTGAATAGAAAGATTGGAGATAACAAAGGCACAGCTCAAGTTGTTGAGGCTTCCTTTTCCAAACATAATACGAAGACTGTCTTGAATAGAAAGACTGGAGATAACAAAGCAAGCACAGAAGTTGCTGAGGCTTCCCTTCCCAAACATAATACTGAACCGGTCTTGAATAGAAAGATTGGAGATGACAGAGATGGGACAGAAGTAGATGAAGTTTCTCAGAAGCCTTCACCGAGTATCTGCAAATACTGGGTGAATGACAGTTGTGTTCATGGTGATCAGTGCCAGAATTTACATTCGTGGTTTTATGGTGATGGGTTTTCCTCAATAGCAAAGCTTGAGGGACACAAGAAGCTTATCACTGGAATGACAATTCCGGATGGATCAGACAAACTTTATTCTGGCAGCACGGATGGGACACTTCGGACATGGGACTGCCGTACTGGTCAATGTGTTGATGTAACGAATCTGGGCGCTGAAATTACCTCTTTGATCAGTGAGGGCCCATGGATTTTTGTTGGTATGAAGGACACTGTCAAGGCATGGCATATTTCAACTGCCGCACCTTTTACTCTTGATGGACCTAAGGGACAAGTCCATGCTATGATTGTTGCCAAGGATACTCATACACTCTTAGCTGGAGCAGAGGATGGTGTAATTTCTGCATGGAGAGGCAGCTCCGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTATGTGGCCACACTAAATCTGTTGTTTGCCTAGCTGTTGGGGGCTCCAAGATGTTGTATTCAGGATCCAGGGATCAAACCATTAAGGTTTGGGACCTTGACACATTTGAGTGTACAATGACACTCAATGCACATACAGATGCAGTCACCTCCCTTATCTGTTGGGACAAGTTCTTGTTATCCGGTTCATCTGACTGCACCATCAAGGTCTGGTTTCAAAACAAAGCAGGGACTTTGGAAGTGGCATATTCACACAATGTGGAAAATGGTGTTGTTACACTCTCTGGGATGACTGATCCAGAAAATAAGCCTATAATATTCTGCTCTGCCGGAGACAATTCAGTTCACCTCTACGAACTGCCATCATTTGCAGAGAGGGGTAGATTGTTTGCAAAGCAAGAAGTTGGCTTAGTTGATATAGCTCCAGGCGGTCTCTTCTTCACTGGAGACAGAACTGGTTTGCTGACAGTCTGGAAATGGTTGGAAGAATACAAGGTTGTGGCATCCTCTTGA
Protein sequence

>Msa1317890

MDVKVARSSRTEQVIGKTCVYWLAGKCNRNPCRFLHSAAPATASCNAANAGYHNAAWKRHYPSHGEIASYPSSCRADTGYYNAAKKHHSSYVYEKPLTKHNTKAASYVYEKPLPKPNAKTVLNRKIGDNKGTAQVVEASFSKHNTKTVLNRKTGDNKASTEVAEASLPKHNTEPVLNRKIGDDRDGTEVDEVSQKPSPSICKYWVNDSCVHGDQCQNLHSWFYGDGFSSIAKLEGHKKLITGMTIPDGSDKLYSGSTDGTLRTWDCRTGQCVDVTNLGAEITSLISEGPWIFVGMKDTVKAWHISTAAPFTLDGPKGQVHAMIVAKDTHTLLAGAEDGVISAWRGSSEANSPFKLVASLCGHTKSVVCLAVGGSKMLYSGSRDQTIKVWDLDTFECTMTLNAHTDAVTSLICWDKFLLSGSSDCTIKVWFQNKAGTLEVAYSHNVENGVVTLSGMTDPENKPIIFCSAGDNSVHLYELPSFAERGRLFAKQEVGLVDIAPGGLFFTGDRTGLLTVWKWLEEYKVVASS*