Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239580 | XP_003627663.2 | 80.089 | 447 | 22 | 4 | 1 | 380 | 7 | 453 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239580 | sp|Q50EK3|C04C1_PINTA | 42.257 | 452 | 170 | 8 | 11 | 380 | 13 | 455 | 2.55e-120 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239580 | G7LCS2 | 80.089 | 447 | 22 | 4 | 1 | 380 | 7 | 453 | 0.0 | 653 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0545050 | Msa1239580 | 0.812365 | 4.397670e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239580 | MtrunA17_Chr8g0351311 | 80.089 | 447 | 22 | 4 | 1 | 380 | 7 | 453 | 0.0 | 653 |
| Msa1239580 | MtrunA17_Chr8g0351391 | 77.852 | 447 | 31 | 5 | 1 | 380 | 7 | 452 | 0.0 | 625 |
| Msa1239580 | MtrunA17_Chr1g0204271 | 51.951 | 410 | 131 | 2 | 37 | 380 | 38 | 447 | 1.55e-153 | 442 |
| Msa1239580 | MtrunA17_Chr8g0351421 | 41.372 | 452 | 192 | 6 | 1 | 380 | 1 | 451 | 4.89e-119 | 355 |
| Msa1239580 | MtrunA17_Chr8g0351461 | 44.068 | 413 | 159 | 4 | 39 | 380 | 39 | 450 | 1.62e-118 | 353 |
| Msa1239580 | MtrunA17_Chr8g0351401 | 45.278 | 413 | 154 | 6 | 39 | 380 | 40 | 451 | 1.04e-116 | 349 |
| Msa1239580 | MtrunA17_Chr8g0351441 | 40.576 | 451 | 196 | 4 | 1 | 380 | 1 | 450 | 2.37e-115 | 345 |
| Msa1239580 | MtrunA17_Chr1g0204241 | 48.750 | 240 | 86 | 4 | 178 | 381 | 1 | 239 | 1.19e-75 | 236 |
| Msa1239580 | MtrunA17_Chr8g0357111 | 54.268 | 164 | 75 | 0 | 39 | 202 | 39 | 202 | 7.89e-60 | 192 |
| Msa1239580 | MtrunA17_Chr5g0403441 | 39.442 | 251 | 151 | 1 | 17 | 267 | 22 | 271 | 8.15e-60 | 196 |
| Msa1239580 | MtrunA17_Chr4g0067191 | 39.442 | 251 | 151 | 1 | 17 | 267 | 7 | 256 | 1.15e-58 | 198 |
| Msa1239580 | MtrunA17_Chr4g0067191 | 44.762 | 105 | 40 | 2 | 293 | 380 | 354 | 457 | 1.75e-23 | 102 |
| Msa1239580 | MtrunA17_Chr7g0260831 | 30.529 | 416 | 226 | 10 | 27 | 380 | 28 | 442 | 4.33e-57 | 194 |
| Msa1239580 | MtrunA17_Chr7g0255131 | 30.201 | 447 | 237 | 15 | 9 | 380 | 3 | 449 | 7.21e-56 | 191 |
| Msa1239580 | MtrunA17_Chr4g0038271 | 32.090 | 402 | 192 | 11 | 57 | 379 | 102 | 501 | 9.74e-56 | 192 |
| Msa1239580 | MtrunA17_Chr1g0184421 | 33.092 | 414 | 207 | 13 | 33 | 380 | 35 | 444 | 2.40e-55 | 189 |
| Msa1239580 | MtrunA17_Chr4g0026941 | 33.007 | 409 | 177 | 12 | 54 | 380 | 87 | 480 | 1.55e-53 | 185 |
| Msa1239580 | MtrunA17_Chr3g0119681 | 30.549 | 419 | 210 | 11 | 41 | 380 | 43 | 459 | 1.32e-52 | 182 |
| Msa1239580 | MtrunA17_Chr7g0260821 | 28.904 | 429 | 217 | 11 | 27 | 380 | 28 | 443 | 1.56e-51 | 179 |
| Msa1239580 | MtrunA17_Chr8g0348751 | 28.873 | 426 | 213 | 10 | 39 | 379 | 31 | 451 | 5.98e-51 | 178 |
| Msa1239580 | MtrunA17_Chr1g0164321 | 30.324 | 432 | 209 | 12 | 38 | 379 | 59 | 488 | 7.15e-51 | 179 |
| Msa1239580 | MtrunA17_Chr1g0184461 | 31.106 | 434 | 226 | 14 | 18 | 380 | 13 | 444 | 3.22e-50 | 176 |
| Msa1239580 | MtrunA17_Chr8g0387001 | 28.846 | 416 | 215 | 12 | 42 | 379 | 34 | 446 | 2.84e-49 | 174 |
| Msa1239580 | MtrunA17_Chr3g0104351 | 29.216 | 421 | 217 | 11 | 39 | 379 | 38 | 457 | 6.56e-48 | 170 |
| Msa1239580 | MtrunA17_Chr2g0321171 | 31.202 | 391 | 203 | 9 | 49 | 380 | 56 | 439 | 9.31e-47 | 166 |
| Msa1239580 | MtrunA17_Chr1g0178971 | 31.620 | 389 | 202 | 12 | 53 | 380 | 65 | 450 | 9.95e-46 | 164 |
| Msa1239580 | MtrunA17_Chr5g0429651 | 28.979 | 421 | 216 | 11 | 39 | 379 | 32 | 449 | 2.06e-45 | 163 |
| Msa1239580 | MtrunA17_Chr7g0225531 | 28.049 | 410 | 223 | 11 | 41 | 380 | 46 | 453 | 1.87e-40 | 149 |
| Msa1239580 | MtrunA17_Chr1g0163491 | 25.991 | 454 | 244 | 15 | 9 | 379 | 18 | 462 | 5.75e-39 | 145 |
| Msa1239580 | MtrunA17_Chr1g0171041 | 26.126 | 444 | 247 | 12 | 16 | 379 | 6 | 448 | 8.42e-39 | 145 |
| Msa1239580 | MtrunA17_Chr8g0380501 | 26.147 | 436 | 236 | 14 | 18 | 379 | 9 | 432 | 4.25e-37 | 140 |
| Msa1239580 | MtrunA17_Chr4g0004481 | 26.622 | 447 | 236 | 15 | 9 | 379 | 3 | 433 | 6.57e-37 | 139 |
| Msa1239580 | MtrunA17_Chr7g0214931 | 29.189 | 370 | 179 | 11 | 57 | 348 | 75 | 439 | 1.83e-36 | 137 |
| Msa1239580 | MtrunA17_Chr1g0163281 | 25.359 | 418 | 223 | 13 | 42 | 379 | 52 | 460 | 1.47e-35 | 136 |
| Msa1239580 | MtrunA17_Chr1g0163431 | 26.882 | 372 | 193 | 11 | 81 | 379 | 40 | 405 | 2.12e-35 | 134 |
| Msa1239580 | MtrunA17_Chr1g0184471 | 28.283 | 396 | 204 | 12 | 21 | 356 | 16 | 391 | 5.39e-35 | 132 |
| Msa1239580 | MtrunA17_Chr7g0227291 | 24.598 | 435 | 246 | 12 | 19 | 379 | 9 | 435 | 6.60e-35 | 134 |
| Msa1239580 | MtrunA17_Chr1g0163391 | 25.301 | 415 | 228 | 13 | 42 | 379 | 34 | 443 | 7.92e-35 | 134 |
| Msa1239580 | MtrunA17_Chr1g0163501 | 26.506 | 415 | 222 | 13 | 42 | 379 | 32 | 440 | 2.79e-34 | 132 |
| Msa1239580 | MtrunA17_Chr6g0449361 | 23.150 | 419 | 232 | 12 | 41 | 379 | 36 | 444 | 4.15e-33 | 129 |
| Msa1239580 | MtrunA17_Chr7g0227281 | 24.256 | 437 | 242 | 15 | 18 | 379 | 13 | 435 | 6.97e-33 | 128 |
| Msa1239580 | MtrunA17_Chr1g0163461 | 25.000 | 420 | 227 | 14 | 42 | 379 | 47 | 460 | 8.95e-33 | 128 |
| Msa1239580 | MtrunA17_Chr1g0164351 | 27.647 | 340 | 181 | 10 | 57 | 332 | 84 | 422 | 1.67e-32 | 126 |
| Msa1239580 | MtrunA17_Chr1g0163511 | 25.175 | 429 | 221 | 16 | 42 | 379 | 41 | 460 | 1.13e-31 | 125 |
| Msa1239580 | MtrunA17_Chr6g0449381 | 21.446 | 415 | 237 | 12 | 45 | 379 | 41 | 446 | 2.42e-31 | 124 |
| Msa1239580 | MtrunA17_Chr1g0163451 | 23.736 | 455 | 254 | 16 | 9 | 379 | 20 | 465 | 4.89e-31 | 124 |
| Msa1239580 | MtrunA17_Chr6g0449341 | 23.769 | 467 | 257 | 16 | 1 | 379 | 49 | 504 | 2.18e-30 | 122 |
| Msa1239580 | MtrunA17_Chr1g0163421 | 23.297 | 455 | 256 | 16 | 9 | 379 | 36 | 481 | 1.72e-29 | 119 |
| Msa1239580 | MtrunA17_Chr6g0449351 | 22.113 | 407 | 227 | 13 | 53 | 379 | 8 | 404 | 1.39e-28 | 116 |
| Msa1239580 | MtrunA17_Chr1g0163211 | 24.057 | 424 | 217 | 14 | 42 | 379 | 38 | 442 | 1.43e-28 | 116 |
| Msa1239580 | MtrunA17_Chr1g0163401 | 25.495 | 455 | 251 | 16 | 8 | 379 | 4 | 453 | 7.81e-28 | 114 |
| Msa1239580 | MtrunA17_Chr1g0163351 | 23.077 | 455 | 257 | 14 | 8 | 379 | 2 | 446 | 8.63e-28 | 114 |
| Msa1239580 | MtrunA17_Chr1g0183611 | 24.390 | 369 | 198 | 11 | 88 | 379 | 2 | 366 | 1.49e-26 | 109 |
| Msa1239580 | MtrunA17_Chr5g0403451 | 44.762 | 105 | 40 | 2 | 293 | 380 | 118 | 221 | 1.34e-24 | 102 |
| Msa1239580 | MtrunA17_Chr1g0204371 | 46.602 | 103 | 54 | 1 | 1 | 102 | 1 | 103 | 5.84e-23 | 92.4 |
| Msa1239580 | MtrunA17_Chr1g0163361 | 25.214 | 234 | 165 | 6 | 42 | 266 | 51 | 283 | 1.04e-18 | 85.5 |
| Msa1239580 | MtrunA17_Chr8g0357121 | 68.627 | 51 | 15 | 1 | 330 | 380 | 43 | 92 | 1.63e-17 | 78.6 |
| Msa1239580 | MtrunA17_Chr6g0449331 | 23.396 | 265 | 188 | 9 | 13 | 266 | 8 | 268 | 3.74e-17 | 83.2 |
| Msa1239580 | MtrunA17_Chr6g0449331 | 29.134 | 127 | 67 | 2 | 270 | 379 | 336 | 456 | 3.60e-12 | 67.8 |
| Msa1239580 | MtrunA17_Chr2g0308941 | 29.947 | 187 | 113 | 5 | 77 | 247 | 11 | 195 | 5.87e-17 | 79.0 |
| Msa1239580 | MtrunA17_Chr1g0163371 | 36.220 | 127 | 59 | 4 | 270 | 379 | 42 | 163 | 1.37e-16 | 78.2 |
| Msa1239580 | MtrunA17_Chr8g0351411 | 75.000 | 40 | 9 | 1 | 342 | 381 | 1 | 39 | 1.47e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239580 | AT2G45510.1 | 42.117 | 444 | 180 | 9 | 12 | 380 | 8 | 449 | 1.27e-112 | 338 |
| Msa1239580 | AT2G44890.1 | 40.498 | 442 | 186 | 7 | 9 | 380 | 15 | 449 | 4.86e-107 | 324 |
| Msa1239580 | AT2G44890.2 | 40.566 | 424 | 180 | 6 | 9 | 366 | 15 | 432 | 6.56e-103 | 313 |
| Msa1239580 | AT3G56630.1 | 33.976 | 415 | 194 | 12 | 39 | 380 | 32 | 439 | 2.34e-62 | 208 |
| Msa1239580 | AT1G34540.1 | 32.524 | 412 | 204 | 10 | 39 | 380 | 32 | 439 | 5.55e-60 | 202 |
| Msa1239580 | AT1G69500.1 | 38.672 | 256 | 156 | 1 | 12 | 267 | 2 | 256 | 2.19e-59 | 201 |
| Msa1239580 | AT1G69500.1 | 36.424 | 151 | 73 | 3 | 247 | 380 | 321 | 465 | 1.12e-24 | 105 |
| Msa1239580 | AT3G48520.1 | 31.050 | 438 | 227 | 12 | 17 | 380 | 5 | 441 | 5.23e-53 | 184 |
| Msa1239580 | AT1G63710.1 | 29.204 | 452 | 231 | 11 | 11 | 379 | 3 | 448 | 8.14e-53 | 184 |
| Msa1239580 | AT5G23190.1 | 30.067 | 449 | 222 | 13 | 17 | 379 | 39 | 481 | 9.13e-53 | 184 |
| Msa1239580 | AT2G27690.1 | 32.316 | 393 | 194 | 7 | 53 | 380 | 48 | 433 | 2.91e-52 | 181 |
| Msa1239580 | AT5G58860.1 | 30.290 | 449 | 224 | 14 | 10 | 379 | 11 | 449 | 1.11e-49 | 175 |
| Msa1239580 | AT3G01900.1 | 30.900 | 411 | 220 | 12 | 31 | 380 | 25 | 432 | 3.93e-49 | 173 |
| Msa1239580 | AT2G45970.1 | 27.655 | 452 | 236 | 12 | 14 | 379 | 5 | 451 | 4.80e-49 | 174 |
| Msa1239580 | AT1G01600.1 | 28.774 | 424 | 213 | 11 | 42 | 379 | 34 | 454 | 8.27e-48 | 171 |
| Msa1239580 | AT4G00360.1 | 28.302 | 424 | 213 | 11 | 42 | 379 | 34 | 452 | 4.19e-47 | 169 |
| Msa1239580 | AT5G63450.1 | 28.704 | 432 | 233 | 12 | 19 | 380 | 18 | 444 | 8.36e-44 | 159 |
| Msa1239580 | AT1G24540.1 | 28.764 | 445 | 231 | 12 | 15 | 379 | 23 | 461 | 1.65e-43 | 158 |
| Msa1239580 | AT5G63450.2 | 28.704 | 432 | 233 | 12 | 19 | 380 | 76 | 502 | 2.72e-43 | 159 |
| Msa1239580 | AT1G13140.1 | 28.074 | 431 | 218 | 14 | 36 | 379 | 40 | 465 | 1.20e-41 | 154 |
| Msa1239580 | AT3G26125.1 | 28.385 | 384 | 183 | 9 | 83 | 379 | 95 | 473 | 5.57e-41 | 152 |
| Msa1239580 | AT1G13140.2 | 28.889 | 405 | 222 | 13 | 36 | 379 | 40 | 439 | 1.04e-40 | 150 |
| Msa1239580 | AT5G52320.2 | 25.980 | 408 | 230 | 11 | 42 | 379 | 38 | 443 | 3.36e-39 | 146 |
| Msa1239580 | AT1G13150.1 | 27.791 | 421 | 216 | 12 | 42 | 379 | 43 | 458 | 4.15e-39 | 146 |
| Msa1239580 | AT5G52320.1 | 25.980 | 408 | 230 | 11 | 42 | 379 | 38 | 443 | 4.28e-39 | 146 |
| Msa1239580 | AT1G65340.1 | 26.764 | 411 | 224 | 15 | 42 | 379 | 38 | 444 | 6.43e-39 | 145 |
| Msa1239580 | AT1G57750.1 | 27.222 | 360 | 199 | 10 | 81 | 379 | 80 | 437 | 2.21e-35 | 135 |
| Msa1239580 | AT2G21910.1 | 25.517 | 435 | 230 | 15 | 29 | 379 | 23 | 447 | 2.51e-34 | 133 |
| Msa1239580 | AT2G23180.1 | 26.144 | 459 | 235 | 17 | 13 | 379 | 7 | 453 | 4.90e-34 | 132 |
| Msa1239580 | AT4G39500.2 | 23.864 | 440 | 256 | 13 | 15 | 379 | 22 | 457 | 1.98e-33 | 130 |
| Msa1239580 | AT4G32170.1 | 25.721 | 451 | 231 | 15 | 15 | 379 | 12 | 444 | 8.85e-33 | 129 |
| Msa1239580 | AT1G57750.2 | 26.513 | 347 | 192 | 10 | 81 | 366 | 80 | 424 | 8.83e-32 | 125 |
| Msa1239580 | AT1G47620.1 | 25.118 | 422 | 222 | 13 | 42 | 379 | 45 | 456 | 3.11e-30 | 122 |
| Msa1239580 | AT4G39510.1 | 22.398 | 442 | 266 | 11 | 13 | 379 | 7 | 446 | 3.78e-30 | 121 |
| Msa1239580 | AT4G39500.1 | 24.595 | 370 | 206 | 10 | 81 | 379 | 40 | 407 | 3.97e-30 | 120 |
| Msa1239580 | AT5G08250.2 | 29.615 | 260 | 162 | 8 | 17 | 263 | 40 | 291 | 1.65e-28 | 117 |
| Msa1239580 | AT5G08250.2 | 47.826 | 92 | 30 | 2 | 305 | 379 | 389 | 479 | 6.01e-18 | 85.9 |
| Msa1239580 | AT5G08250.1 | 31.925 | 213 | 135 | 5 | 57 | 263 | 21 | 229 | 1.98e-28 | 116 |
| Msa1239580 | AT5G08250.1 | 47.826 | 92 | 30 | 2 | 305 | 379 | 327 | 417 | 8.73e-18 | 85.1 |
| Msa1239580 | AT5G02900.1 | 23.318 | 446 | 233 | 18 | 15 | 379 | 2 | 419 | 1.38e-22 | 99.4 |
| Msa1239580 | AT4G39490.1 | 26.087 | 253 | 174 | 8 | 24 | 266 | 17 | 266 | 5.13e-22 | 98.2 |
| Msa1239580 | AT4G39490.1 | 35.106 | 94 | 44 | 2 | 303 | 379 | 364 | 457 | 1.28e-12 | 69.7 |
| Msa1239580 | AT4G39480.1 | 26.786 | 224 | 153 | 7 | 56 | 271 | 51 | 271 | 1.47e-20 | 93.6 |
| Msa1239580 | AT4G39480.1 | 34.783 | 92 | 43 | 1 | 305 | 379 | 363 | 454 | 4.37e-13 | 70.9 |
Find 57 sgRNAs with CRISPR-Local
Find 460 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGCCCTTTCAAGTTTA+TGG | 0.099264 | 8_2:+21452447 | Msa1239580:CDS |
| CTTTCCATAGTTCTCAAAAT+TGG | 0.206087 | 8_2:-21445799 | None:intergenic |
| CTAGTAAATCCTTCAAATTT+TGG | 0.227984 | 8_2:-21450982 | None:intergenic |
| AGGTGATGACTTGCGGGTTT+AGG | 0.243103 | 8_2:-21445470 | None:intergenic |
| GGTGATGACTTGCGGGTTTA+GGG | 0.293498 | 8_2:-21445469 | None:intergenic |
| ATAAACTTGAAAGGGCTTTC+TGG | 0.293598 | 8_2:-21452445 | None:intergenic |
| ATCGTTATGTTGATGTCTTT+TGG | 0.298512 | 8_2:+21451520 | Msa1239580:CDS |
| CAAAATTTGAAGGATTTACT+AGG | 0.351832 | 8_2:+21450983 | Msa1239580:CDS |
| GAAAGATGGCTTGATGAAAA+TGG | 0.366675 | 8_2:+21452412 | Msa1239580:CDS |
| AAATCCATGATGGACGGAAA+TGG | 0.383850 | 8_2:-21445501 | None:intergenic |
| TGGTGAAGGTGATGACTTGC+GGG | 0.397819 | 8_2:-21445476 | None:intergenic |
| AGTTCTCCACCAAGATGTTA+AGG | 0.407074 | 8_2:+21451068 | Msa1239580:CDS |
| AGTATATACTCAACATTACT+TGG | 0.417213 | 8_2:-21445771 | None:intergenic |
| TTCATCCTCCCCATTGCATA+AGG | 0.419437 | 8_2:-21452352 | None:intergenic |
| AAGAAGTATCATCCTGTTGC+TGG | 0.428638 | 8_2:+21445627 | Msa1239580:CDS |
| TCATATCAACCTTATGCAAT+GGG | 0.435413 | 8_2:+21452343 | Msa1239580:CDS |
| TCACTGTTGATGGCGAGAAA+TGG | 0.443626 | 8_2:+21451017 | Msa1239580:CDS |
| AATCCATGATGGACGGAAAT+GGG | 0.445119 | 8_2:-21445500 | None:intergenic |
| TTGAATACTGTGCCAGCAAC+AGG | 0.447778 | 8_2:-21445639 | None:intergenic |
| TTGAAGGATTTACTAGGAGA+TGG | 0.454902 | 8_2:+21450989 | Msa1239580:CDS |
| CATCCCATTTCCGTCCATCA+TGG | 0.466730 | 8_2:+21445497 | Msa1239580:exon |
| ATCTGTGGAACAAGTGAAGA+AGG | 0.471256 | 8_2:+21451450 | Msa1239580:CDS |
| ACTAAAGTCCCTTAACATCT+TGG | 0.471904 | 8_2:-21451077 | None:intergenic |
| TGGGGAGGATGAAATTCATA+TGG | 0.472302 | 8_2:+21452362 | Msa1239580:CDS |
| ATAAAGAAGTTTCTCAACAT+TGG | 0.474546 | 8_2:+21451546 | Msa1239580:CDS |
| GTACAACTACCAAAATTTGA+AGG | 0.481829 | 8_2:+21450973 | Msa1239580:CDS |
| TATAAACTTCACTTCTGAAA+GGG | 0.487061 | 8_2:-21445740 | None:intergenic |
| AGCCTTCCCACAGGAAGTGC+AGG | 0.503760 | 8_2:-21452157 | None:intergenic |
| GTTCTCCACCAAGATGTTAA+GGG | 0.505537 | 8_2:+21451069 | Msa1239580:CDS |
| GAAAAGCCATAAACTTGAAA+GGG | 0.506145 | 8_2:-21452453 | None:intergenic |
| CAACAAATGAAGAAATCAAA+GGG | 0.513882 | 8_2:+21451642 | Msa1239580:CDS |
| GTCATATCAACCTTATGCAA+TGG | 0.514035 | 8_2:+21452342 | Msa1239580:CDS |
| TGAAAAGCCATAAACTTGAA+AGG | 0.516827 | 8_2:-21452454 | None:intergenic |
| CAAGGAAGTACAAAACATAC+AGG | 0.527756 | 8_2:+21445709 | Msa1239580:CDS |
| GTATAAACTTCACTTCTGAA+AGG | 0.533183 | 8_2:-21445741 | None:intergenic |
| TCAACAAATGAAGAAATCAA+AGG | 0.541134 | 8_2:+21451641 | Msa1239580:CDS |
| AAAGTCCCTTAACATCTTGG+TGG | 0.546192 | 8_2:-21451074 | None:intergenic |
| GCGAGAAATGGCGCGAGCAA+AGG | 0.568220 | 8_2:+21451029 | Msa1239580:CDS |
| ACTGAACTTGACAGCATCTG+TGG | 0.571790 | 8_2:+21451435 | Msa1239580:CDS |
| GGGGAGGATGAAATTCATAT+GGG | 0.574688 | 8_2:+21452363 | Msa1239580:CDS |
| AGGAATTCAGACCTGAAAGA+TGG | 0.575283 | 8_2:+21452398 | Msa1239580:CDS |
| GTTTCTCAACATTGGATCAG+AGG | 0.576083 | 8_2:+21451554 | Msa1239580:CDS |
| ACTTGCAGTATCAAAAGCAT+TGG | 0.582895 | 8_2:-21451484 | None:intergenic |
| ATTATATGACTGATCTTGCA+AGG | 0.584790 | 8_2:+21445691 | Msa1239580:CDS |
| GCAGGTCCTCAGATATGCCT+AGG | 0.585696 | 8_2:+21452944 | Msa1239580:intron |
| ATGGTGAAGGTGATGACTTG+CGG | 0.601649 | 8_2:-21445477 | None:intergenic |
| GGACGGAAATGGGATGGTGA+AGG | 0.604990 | 8_2:-21445490 | None:intergenic |
| GATAGAAAATCCATGATGGA+CGG | 0.605938 | 8_2:-21445507 | None:intergenic |
| ATTTGATAGAAAATCCATGA+TGG | 0.606150 | 8_2:-21445511 | None:intergenic |
| ATCAACCTTATGCAATGGGG+AGG | 0.625147 | 8_2:+21452347 | Msa1239580:CDS |
| GAGTTTCAGTGAGAACTGCA+TGG | 0.628203 | 8_2:-21452123 | None:intergenic |
| TCCTTTCCTAGGCATATCTG+AGG | 0.633793 | 8_2:-21452950 | None:intergenic |
| CATATGGGGTGATGATGCAG+AGG | 0.636597 | 8_2:+21452378 | Msa1239580:CDS |
| TCTGTGGAACAAGTGAAGAA+GGG | 0.644904 | 8_2:+21451451 | Msa1239580:CDS |
| CATGATGGACGGAAATGGGA+TGG | 0.671953 | 8_2:-21445496 | None:intergenic |
| CATATCAACCTTATGCAATG+GGG | 0.714073 | 8_2:+21452344 | Msa1239580:CDS |
| GGGAGGATGAAATTCATATG+GGG | 0.726219 | 8_2:+21452364 | Msa1239580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATACTCTTTATTAAA+TGG | + | chr8_2:21445825-21445844 | Msa1239580:intron | 10.0% |
| !!! | TTTTCTATCTATAATTTATA+TGG | - | chr8_2:21446024-21446043 | None:intergenic | 10.0% |
| !! | TAGAAAATTTCTAAATTTAA+TGG | + | chr8_2:21446037-21446056 | Msa1239580:intron | 10.0% |
| !! | ATATAATAATTTCCTTTAAT+GGG | - | chr8_2:21446856-21446875 | None:intergenic | 10.0% |
| !! | TATATAATAATTTCCTTTAA+TGG | - | chr8_2:21446857-21446876 | None:intergenic | 10.0% |
| !! | ATTGTATTATTATAATACAA+TGG | + | chr8_2:21448029-21448048 | Msa1239580:intron | 10.0% |
| !!! | AATGTCAAATTTAAAATTAT+AGG | + | chr8_2:21448124-21448143 | Msa1239580:intron | 10.0% |
| !! | ATATAATAATTTCCTTTAAT+GGG | - | chr8_2:21446856-21446875 | None:intergenic | 10.0% |
| !! | TATATAATAATTTCCTTTAA+TGG | - | chr8_2:21446857-21446876 | None:intergenic | 10.0% |
| !!! | GATATATTTTAATTTGAACT+AGG | + | chr8_2:21446285-21446304 | Msa1239580:intron | 15.0% |
| !! | TATAATAATTTCCTTTAATG+GGG | - | chr8_2:21446855-21446874 | None:intergenic | 15.0% |
| !!! | TAATGAAATTGTTTTTAAGA+TGG | + | chr8_2:21446890-21446909 | Msa1239580:intron | 15.0% |
| !!! | AATTCATATTTTACACTTAA+TGG | + | chr8_2:21446972-21446991 | Msa1239580:intron | 15.0% |
| !! | CATGATACTTATTAAAATTA+AGG | - | chr8_2:21447010-21447029 | None:intergenic | 15.0% |
| !!! | AATTTTAATAAGTATCATGT+AGG | + | chr8_2:21447011-21447030 | Msa1239580:intron | 15.0% |
| !!! | TTAAAACTTTTGAAATATGT+GGG | - | chr8_2:21447221-21447240 | None:intergenic | 15.0% |
| !!! | TTTAAAACTTTTGAAATATG+TGG | - | chr8_2:21447222-21447241 | None:intergenic | 15.0% |
| !! | TAATTAAATTTAAATTCGAG+GGG | - | chr8_2:21447618-21447637 | None:intergenic | 15.0% |
| !! | CTAATTAAATTTAAATTCGA+GGG | - | chr8_2:21447619-21447638 | None:intergenic | 15.0% |
| !!! | TATTTTATTGATGAATATGA+TGG | - | chr8_2:21447971-21447990 | None:intergenic | 15.0% |
| !! | ATAATACAATGATGATAATT+GGG | - | chr8_2:21448019-21448038 | None:intergenic | 15.0% |
| !! | AATAATACAATGATGATAAT+TGG | - | chr8_2:21448020-21448039 | None:intergenic | 15.0% |
| !! | ACAAATTATATATACACATT+TGG | - | chr8_2:21448337-21448356 | None:intergenic | 15.0% |
| !! | GACAAGATATATAAAAATAT+AGG | + | chr8_2:21448570-21448589 | Msa1239580:intron | 15.0% |
| !! | TATAATAATTTCCTTTAATG+GGG | - | chr8_2:21446855-21446874 | None:intergenic | 15.0% |
| !!! | TAATGAAATTGTTTTTAAGA+TGG | + | chr8_2:21446890-21446909 | Msa1239580:intron | 15.0% |
| !!! | AATTCATATTTTACACTTAA+TGG | + | chr8_2:21446972-21446991 | Msa1239580:intron | 15.0% |
| !! | CATGATACTTATTAAAATTA+AGG | - | chr8_2:21447010-21447029 | None:intergenic | 15.0% |
| !!! | AATTTTAATAAGTATCATGT+AGG | + | chr8_2:21447011-21447030 | Msa1239580:intron | 15.0% |
| !! | TAATTCTCTACAATATATTT+AGG | + | chr8_2:21452516-21452535 | Msa1239580:intron | 15.0% |
| !! | TTTAACATATTTGAATAACA+TGG | - | chr8_2:21452846-21452865 | None:intergenic | 15.0% |
| !!! | TTCATTGATTTTTACTTTTG+TGG | + | chr8_2:21445858-21445877 | Msa1239580:intron | 20.0% |
| !!! | TGTGATAAGTTTAAAGTAAA+AGG | + | chr8_2:21446194-21446213 | Msa1239580:intron | 20.0% |
| !! | TAAAATATATCAATCACTCT+TGG | - | chr8_2:21446276-21446295 | None:intergenic | 20.0% |
| !!! | TTTGATTTTCCAAATATACT+AGG | - | chr8_2:21446727-21446746 | None:intergenic | 20.0% |
| !! | ATAATAATTTCCTTTAATGG+GGG | - | chr8_2:21446854-21446873 | None:intergenic | 20.0% |
| !!! | ATATGAATTTGACTTGATAT+TGG | - | chr8_2:21446961-21446980 | None:intergenic | 20.0% |
| !!! | TAAAACTTTTGAAATATGTG+GGG | - | chr8_2:21447220-21447239 | None:intergenic | 20.0% |
| !! | GCTAATTAAATTTAAATTCG+AGG | - | chr8_2:21447620-21447639 | None:intergenic | 20.0% |
| !! | TTTCTATAGTGTTATGATAA+TGG | - | chr8_2:21447654-21447673 | None:intergenic | 20.0% |
| !! | TTATCATAACACTATAGAAA+AGG | + | chr8_2:21447654-21447673 | Msa1239580:intron | 20.0% |
| !! | TATCATAACACTATAGAAAA+GGG | + | chr8_2:21447655-21447674 | Msa1239580:intron | 20.0% |
| !! | TCAAGTCTATAAAATAAACT+TGG | + | chr8_2:21447902-21447921 | Msa1239580:intron | 20.0% |
| !!! | TTTGTTAATTTCTTTTACGT+GGG | - | chr8_2:21448168-21448187 | None:intergenic | 20.0% |
| !!! | TTTTGTTAATTTCTTTTACG+TGG | - | chr8_2:21448169-21448188 | None:intergenic | 20.0% |
| !!! | TGACTAGTTTTATATTTCAT+CGG | - | chr8_2:21448691-21448710 | None:intergenic | 20.0% |
| !!! | ATTCCATTTTTCAATTTGTT+TGG | + | chr8_2:21449778-21449797 | Msa1239580:intron | 20.0% |
| !!! | TTTGATTTTCCAAATATACT+AGG | - | chr8_2:21446727-21446746 | None:intergenic | 20.0% |
| !! | ATAATAATTTCCTTTAATGG+GGG | - | chr8_2:21446854-21446873 | None:intergenic | 20.0% |
| !!! | ATATGAATTTGACTTGATAT+TGG | - | chr8_2:21446961-21446980 | None:intergenic | 20.0% |
| !! | AATATTGTGATTAAATGAAG+AGG | + | chr8_2:21451235-21451254 | Msa1239580:intron | 20.0% |
| !!! | TTTTTAAACTTTGTTATTGC+TGG | + | chr8_2:21451923-21451942 | Msa1239580:intron | 20.0% |
| !!! | TTTTAAACTTTGTTATTGCT+GGG | + | chr8_2:21451924-21451943 | Msa1239580:intron | 20.0% |
| !!! | GTTAGTAGAATTTTTCTATA+CGG | + | chr8_2:21452478-21452497 | Msa1239580:intron | 20.0% |
| !! | TCAACAAAAACAAAAGAAAA+CGG | + | chr8_2:21452659-21452678 | Msa1239580:intron | 20.0% |
| !! | ATATTTGAATAACATGGTAA+TGG | - | chr8_2:21452840-21452859 | None:intergenic | 20.0% |
| ! | ATTTGATAGAAAATCCATGA+TGG | - | chr8_2:21445514-21445533 | None:intergenic | 25.0% |
| !! | TATAAACTTCACTTCTGAAA+GGG | - | chr8_2:21445743-21445762 | None:intergenic | 25.0% |
| ! | AGTATATACTCAACATTACT+TGG | - | chr8_2:21445774-21445793 | None:intergenic | 25.0% |
| !!! | AAAACCAATTTTGAGAACTA+TGG | + | chr8_2:21445795-21445814 | Msa1239580:CDS | 25.0% |
| ! | AATAGTATAGCTGTATAGAT+CGG | + | chr8_2:21445891-21445910 | Msa1239580:intron | 25.0% |
| !!! | TTGCTTATTTTTTTACTGCA+GGG | + | chr8_2:21446241-21446260 | Msa1239580:intron | 25.0% |
| ! | ATGCAGAGAATACTAAAAAA+TGG | + | chr8_2:21446461-21446480 | Msa1239580:intron | 25.0% |
| !! | TTTGCAGGTTAATTATTTTC+CGG | - | chr8_2:21446541-21446560 | None:intergenic | 25.0% |
| ! | TTTGGAAAATCAAAGAAAGA+AGG | + | chr8_2:21446733-21446752 | Msa1239580:intron | 25.0% |
| ! | TTGGAAAATCAAAGAAAGAA+GGG | + | chr8_2:21446734-21446753 | Msa1239580:intron | 25.0% |
| !! | GAAATATTTTCTGTGTGTAT+CGG | + | chr8_2:21446763-21446782 | Msa1239580:intron | 25.0% |
| !!! | AAAACTTTTGAAATATGTGG+GGG | - | chr8_2:21447219-21447238 | None:intergenic | 25.0% |
| !! | TTGTTAATTTCTTTTACGTG+GGG | - | chr8_2:21448167-21448186 | None:intergenic | 25.0% |
| !!! | CTTACAGAAACTATTTTTCA+AGG | + | chr8_2:21448305-21448324 | Msa1239580:intron | 25.0% |
| ! | CAAAGAATAATGTGTTTGTT+GGG | - | chr8_2:21448755-21448774 | Msa1239590:CDS | 25.0% |
| ! | ACAAAGAATAATGTGTTTGT+TGG | - | chr8_2:21448756-21448775 | Msa1239590:CDS | 25.0% |
| ! | ATCATTTGAATCTGATAAGA+TGG | - | chr8_2:21448784-21448803 | Msa1239590:CDS | 25.0% |
| ! | TGTTAGTGATGTGAAAAAAT+GGG | - | chr8_2:21449057-21449076 | Msa1239590:CDS | 25.0% |
| ! | TTGTTAGTGATGTGAAAAAA+TGG | - | chr8_2:21449058-21449077 | Msa1239590:CDS | 25.0% |
| !!! | ATTTATTTTCATACCTCTGT+CGG | + | chr8_2:21449288-21449307 | Msa1239580:intron | 25.0% |
| ! | ATAATGTGGAAAGAATTGTA+TGG | + | chr8_2:21449735-21449754 | Msa1239580:intron | 25.0% |
| ! | AAAATGGAATAATGCTAACA+AGG | - | chr8_2:21449768-21449787 | Msa1239590:CDS | 25.0% |
| ! | ATGCCAAACAAATTGAAAAA+TGG | - | chr8_2:21449784-21449803 | Msa1239590:CDS | 25.0% |
| !!! | TTTTTGATGGACAGAATTTT+CGG | - | chr8_2:21449895-21449914 | Msa1239590:CDS | 25.0% |
| ! | AACAACAATCTAAGGAATTA+TGG | - | chr8_2:21450044-21450063 | None:intergenic | 25.0% |
| !! | TTTGCAGGTTAATTATTTTC+CGG | - | chr8_2:21446541-21446560 | None:intergenic | 25.0% |
| ! | TTTGGAAAATCAAAGAAAGA+AGG | + | chr8_2:21446733-21446752 | Msa1239580:intron | 25.0% |
| ! | TTGGAAAATCAAAGAAAGAA+GGG | + | chr8_2:21446734-21446753 | Msa1239580:intron | 25.0% |
| !! | GAAATATTTTCTGTGTGTAT+CGG | + | chr8_2:21446763-21446782 | Msa1239580:intron | 25.0% |
| !! | CTAGTAAATCCTTCAAATTT+TGG | - | chr8_2:21450985-21451004 | None:intergenic | 25.0% |
| ! | CAAAATTTGAAGGATTTACT+AGG | + | chr8_2:21450983-21451002 | Msa1239580:CDS | 25.0% |
| !! | AATTATTGCCTTCTTTTATG+TGG | + | chr8_2:21451324-21451343 | Msa1239580:intron | 25.0% |
| ! | ACTTGATCGAATAATTTAGT+AGG | + | chr8_2:21451362-21451381 | Msa1239580:intron | 25.0% |
| !! | TCTTTTCATGAAATCAACAT+TGG | + | chr8_2:21451386-21451405 | Msa1239580:CDS | 25.0% |
| !! | TCAATTTTCAAAGTTGCATT+TGG | + | chr8_2:21451411-21451430 | Msa1239580:CDS | 25.0% |
| ! | ATAAAGAAGTTTCTCAACAT+TGG | + | chr8_2:21451546-21451565 | Msa1239580:CDS | 25.0% |
| ! | TCAACAAATGAAGAAATCAA+AGG | + | chr8_2:21451641-21451660 | Msa1239580:CDS | 25.0% |
| ! | CAACAAATGAAGAAATCAAA+GGG | + | chr8_2:21451642-21451661 | Msa1239580:CDS | 25.0% |
| ! | TGGATAATAGTTTGAGAAAA+AGG | - | chr8_2:21451753-21451772 | None:intergenic | 25.0% |
| !!! | TTTTTTACACTATATCCATC+TGG | - | chr8_2:21452311-21452330 | None:intergenic | 25.0% |
| ! | AGATGGATATAGTGTAAAAA+AGG | + | chr8_2:21452310-21452329 | Msa1239580:intron | 25.0% |
| ! | TTTAGGTAAATGATCGTTAT+AGG | + | chr8_2:21452533-21452552 | Msa1239580:intron | 25.0% |
| ! | TTAGGTAAATGATCGTTATA+GGG | + | chr8_2:21452534-21452553 | Msa1239580:intron | 25.0% |
| ATTATATGACTGATCTTGCA+AGG | + | chr8_2:21445691-21445710 | Msa1239580:CDS | 30.0% | |
| GTATAAACTTCACTTCTGAA+AGG | - | chr8_2:21445744-21445763 | None:intergenic | 30.0% | |
| CTTTCCATAGTTCTCAAAAT+TGG | - | chr8_2:21445802-21445821 | None:intergenic | 30.0% | |
| !! | CAATTTTGAGAACTATGGAA+AGG | + | chr8_2:21445800-21445819 | Msa1239580:CDS | 30.0% |
| GGTAAAGTGGTAAAACTATA+AGG | - | chr8_2:21446064-21446083 | None:intergenic | 30.0% | |
| AATTTGATCATCTATAGCAG+CGG | - | chr8_2:21446085-21446104 | None:intergenic | 30.0% | |
| CAATACCAATTTCTTGATGT+CGG | - | chr8_2:21446126-21446145 | None:intergenic | 30.0% | |
| CATCAAGAAATTGGTATTGT+TGG | + | chr8_2:21446127-21446146 | Msa1239580:intron | 30.0% | |
| !!! | CTTGCTTATTTTTTTACTGC+AGG | + | chr8_2:21446240-21446259 | Msa1239580:intron | 30.0% |
| ATATTCACCAGCATAACAAT+AGG | - | chr8_2:21446331-21446350 | None:intergenic | 30.0% | |
| TATTGTTATGCTGGTGAATA+TGG | + | chr8_2:21446330-21446349 | Msa1239580:intron | 30.0% | |
| TAATCTGTTCTACCTTCAAA+TGG | - | chr8_2:21446390-21446409 | None:intergenic | 30.0% | |
| ! | TAACCTAATAAGTGTTGTTG+CGG | + | chr8_2:21446511-21446530 | Msa1239580:intron | 30.0% |
| !!! | TCACAGTTTGTTATTTTTGC+AGG | - | chr8_2:21446556-21446575 | None:intergenic | 30.0% |
| !!! | TTTTTAAGATGGAGCAGATT+CGG | + | chr8_2:21446901-21446920 | Msa1239580:intron | 30.0% |
| ! | CTGGTATTTTACATGATTTG+TGG | - | chr8_2:21447059-21447078 | None:intergenic | 30.0% |
| ! | TGTTAATTTCTTTTACGTGG+GGG | - | chr8_2:21448166-21448185 | None:intergenic | 30.0% |
| AATTTCATACAAGTTGTAGC+AGG | + | chr8_2:21448188-21448207 | Msa1239580:intron | 30.0% | |
| TTAAGTCTTCCTTCATGTTA+TGG | - | chr8_2:21448461-21448480 | None:intergenic | 30.0% | |
| ! | ATAATGTGTTTGTTGGGAAA+GGG | - | chr8_2:21448749-21448768 | Msa1239590:CDS | 30.0% |
| ! | AATAATGTGTTTGTTGGGAA+AGG | - | chr8_2:21448750-21448769 | Msa1239590:CDS | 30.0% |
| TAGCACTGTTAAACAAAGTA+GGG | - | chr8_2:21448815-21448834 | Msa1239590:CDS | 30.0% | |
| !! | ATTAAGTTGGTCCTAATAGT+AGG | + | chr8_2:21448840-21448859 | Msa1239580:intron | 30.0% |
| ! | AATTTTAAACCAAACCTAGG+AGG | - | chr8_2:21449239-21449258 | Msa1239590:CDS | 30.0% |
| ! | TCCTAGGTTTGGTTTAAAAT+TGG | + | chr8_2:21449238-21449257 | Msa1239580:intron | 30.0% |
| ! | CCTAGGTTTGGTTTAAAATT+GGG | + | chr8_2:21449239-21449258 | Msa1239580:intron | 30.0% |
| !! | AATTGGGATTAGTTACTTTG+AGG | + | chr8_2:21449255-21449274 | Msa1239580:intron | 30.0% |
| !! | ATTGGGATTAGTTACTTTGA+GGG | + | chr8_2:21449256-21449275 | Msa1239580:intron | 30.0% |
| TTGAAAAATTGCCAAACTCA+TGG | - | chr8_2:21449472-21449491 | Msa1239590:CDS | 30.0% | |
| ! | TTGTTGTTGGAAACTATCTA+CGG | - | chr8_2:21449613-21449632 | Msa1239590:CDS | 30.0% |
| ! | GAAAAGTACATCAGATAATG+TGG | + | chr8_2:21449721-21449740 | Msa1239580:intron | 30.0% |
| ! | AATTTGTTTGGCATCTGATT+TGG | + | chr8_2:21449790-21449809 | Msa1239580:intron | 30.0% |
| TCCATCAAAAACTTCAATTC+TGG | + | chr8_2:21449904-21449923 | Msa1239580:intron | 30.0% | |
| ! | TCCAGAATTGAAGTTTTTGA+TGG | - | chr8_2:21449908-21449927 | Msa1239590:CDS | 30.0% |
| ! | AATTCCTTAGATTGTTGTTG+CGG | + | chr8_2:21450045-21450064 | Msa1239580:intron | 30.0% |
| !!! | TCACAGTTTGTTATTTTTGC+AGG | - | chr8_2:21446556-21446575 | None:intergenic | 30.0% |
| ! | CTGGTATTTTACATGATTTG+TGG | - | chr8_2:21447059-21447078 | None:intergenic | 30.0% |
| TGCATATTTGCATTGCTAAA+AGG | + | chr8_2:21450815-21450834 | Msa1239580:intron | 30.0% | |
| GATACAATACGTATCTGATA+CGG | - | chr8_2:21450849-21450868 | None:intergenic | 30.0% | |
| GTATTGTATCTGTGCATTAT+AGG | + | chr8_2:21450859-21450878 | Msa1239580:intron | 30.0% | |
| TATCTGTGCATTATAGGTTA+GGG | + | chr8_2:21450865-21450884 | Msa1239580:intron | 30.0% | |
| GCATTTGTTTGATTCTTAGA+AGG | + | chr8_2:21450907-21450926 | Msa1239580:intron | 30.0% | |
| ATTCTTAGAAGGATTAAGTG+TGG | + | chr8_2:21450918-21450937 | Msa1239580:intron | 30.0% | |
| TGGCTTAAACATTTCTATGT+AGG | + | chr8_2:21450946-21450965 | Msa1239580:intron | 30.0% | |
| GGCTTAAACATTTCTATGTA+GGG | + | chr8_2:21450947-21450966 | Msa1239580:intron | 30.0% | |
| GCTTAAACATTTCTATGTAG+GGG | + | chr8_2:21450948-21450967 | Msa1239580:intron | 30.0% | |
| GTACAACTACCAAAATTTGA+AGG | + | chr8_2:21450973-21450992 | Msa1239580:CDS | 30.0% | |
| ! | ATCGTTATGTTGATGTCTTT+TGG | + | chr8_2:21451520-21451539 | Msa1239580:CDS | 30.0% |
| TGTACTATGTAGAGAAAAAG+TGG | + | chr8_2:21451838-21451857 | Msa1239580:intron | 30.0% | |
| ! | CATCAAGATTCTTTTTATGC+AGG | + | chr8_2:21452253-21452272 | Msa1239580:intron | 30.0% |
| ATAGTGTAAAAAAGGAGACA+TGG | + | chr8_2:21452318-21452337 | Msa1239580:intron | 30.0% | |
| TCATATCAACCTTATGCAAT+GGG | + | chr8_2:21452343-21452362 | Msa1239580:CDS | 30.0% | |
| GAAAAGCCATAAACTTGAAA+GGG | - | chr8_2:21452456-21452475 | None:intergenic | 30.0% | |
| TGAAAAGCCATAAACTTGAA+AGG | - | chr8_2:21452457-21452476 | None:intergenic | 30.0% | |
| !!! | TTTCAAGTTTATGGCTTTTC+AGG | + | chr8_2:21452456-21452475 | Msa1239580:CDS | 30.0% |
| TAGGTAAATGATCGTTATAG+GGG | + | chr8_2:21452535-21452554 | Msa1239580:intron | 30.0% | |
| TTTGTGACATGTATCATTGT+TGG | - | chr8_2:21452577-21452596 | None:intergenic | 30.0% | |
| AAATCACTATCCTCATCTTA+CGG | - | chr8_2:21452764-21452783 | None:intergenic | 30.0% | |
| TCACCTTTGACTATATATCA+AGG | + | chr8_2:21452796-21452815 | Msa1239580:intron | 30.0% | |
| !! | TTTGAATAACATGGTAATGG+AGG | - | chr8_2:21452837-21452856 | None:intergenic | 30.0% |
| ATACATTGCATACAAAGTCT+TGG | - | chr8_2:21452873-21452892 | None:intergenic | 30.0% | |
| ATTTAAGCACACTCTTACAA+AGG | - | chr8_2:21452903-21452922 | None:intergenic | 30.0% | |
| ! | GATAGAAAATCCATGATGGA+CGG | - | chr8_2:21445510-21445529 | None:intergenic | 35.0% |
| GACAAAGCTGCAAAAACAAA+AGG | - | chr8_2:21445537-21445556 | None:intergenic | 35.0% | |
| ! | CAAGGAAGTACAAAACATAC+AGG | + | chr8_2:21445709-21445728 | Msa1239580:CDS | 35.0% |
| CATTACCGACATCAAGAAAT+TGG | + | chr8_2:21446118-21446137 | Msa1239580:intron | 35.0% | |
| AAGATCCGACAATACATGTT+CGG | + | chr8_2:21446156-21446175 | Msa1239580:intron | 35.0% | |
| AAACTCCGAACATGTATTGT+CGG | - | chr8_2:21446164-21446183 | None:intergenic | 35.0% | |
| !!! | TTTTTTACTGCAGGGAATTC+AGG | + | chr8_2:21446249-21446268 | Msa1239580:intron | 35.0% |
| TGTTAGACCTATTGTTATGC+TGG | + | chr8_2:21446321-21446340 | Msa1239580:intron | 35.0% | |
| GTTCTACCTTCAAATGGAAA+GGG | - | chr8_2:21446384-21446403 | None:intergenic | 35.0% | |
| TGTTCTACCTTCAAATGGAA+AGG | - | chr8_2:21446385-21446404 | None:intergenic | 35.0% | |
| !! | AACAGATTATTTCTGAGCTG+AGG | + | chr8_2:21446401-21446420 | Msa1239580:intron | 35.0% |
| CAAACTGTGAAATAAACCTG+AGG | + | chr8_2:21446566-21446585 | Msa1239580:intron | 35.0% | |
| ACTCAGACACCTAGTATATT+TGG | + | chr8_2:21446715-21446734 | Msa1239580:intron | 35.0% | |
| !! | CAGATTCGGTTACTCTTTTA+AGG | + | chr8_2:21446915-21446934 | Msa1239580:intron | 35.0% |
| TAAGTGTATCATTCTAGCAC+TGG | - | chr8_2:21447313-21447332 | None:intergenic | 35.0% | |
| CACTTAACACACAGTGAATT+CGG | + | chr8_2:21447327-21447346 | Msa1239580:intron | 35.0% | |
| CTATATGAACCAAAGACACT+TGG | + | chr8_2:21447359-21447378 | Msa1239580:intron | 35.0% | |
| TAACATACACCAAGTGTCTT+TGG | - | chr8_2:21447371-21447390 | None:intergenic | 35.0% | |
| TGATTACCATAAGCCCTTAT+GGG | - | chr8_2:21447575-21447594 | None:intergenic | 35.0% | |
| ATGATTACCATAAGCCCTTA+TGG | - | chr8_2:21447576-21447595 | None:intergenic | 35.0% | |
| !! | TCCCATATGAACCTTTTTCA+TGG | + | chr8_2:21447723-21447742 | Msa1239580:intron | 35.0% |
| CCCATGAAAAAGGTTCATAT+GGG | - | chr8_2:21447727-21447746 | None:intergenic | 35.0% | |
| !! | CCCATATGAACCTTTTTCAT+GGG | + | chr8_2:21447724-21447743 | Msa1239580:intron | 35.0% |
| TCCCATGAAAAAGGTTCATA+TGG | - | chr8_2:21447728-21447747 | None:intergenic | 35.0% | |
| GATCTCCAATCATAAAGGTT+GGG | + | chr8_2:21447746-21447765 | Msa1239580:intron | 35.0% | |
| ACTAGAAAACGACAAGTGAT+GGG | - | chr8_2:21447774-21447793 | None:intergenic | 35.0% | |
| ! | CGTTTCTCATTCATCTGTTT+TGG | - | chr8_2:21448600-21448619 | None:intergenic | 35.0% |
| AGCACTGTTAAACAAAGTAG+GGG | - | chr8_2:21448814-21448833 | Msa1239590:CDS | 35.0% | |
| GTAGCACTGTTAAACAAAGT+AGG | - | chr8_2:21448816-21448835 | Msa1239590:CDS | 35.0% | |
| CAGTGCTACAGAAATTAAGT+TGG | + | chr8_2:21448827-21448846 | Msa1239580:intron | 35.0% | |
| GATGAAGATCAAGTCTATCT+TGG | - | chr8_2:21448960-21448979 | Msa1239590:CDS | 35.0% | |
| AAAAAATGGGTGATAGACTC+GGG | - | chr8_2:21449044-21449063 | Msa1239590:CDS | 35.0% | |
| GAAAAAATGGGTGATAGACT+CGG | - | chr8_2:21449045-21449064 | Msa1239590:CDS | 35.0% | |
| AAGATGCACTTCAGATATGA+CGG | + | chr8_2:21449076-21449095 | Msa1239580:intron | 35.0% | |
| CCAAAAGCAAATTTGACTCA+GGG | - | chr8_2:21449140-21449159 | Msa1239590:CDS | 35.0% | |
| !!! | GTCAAATTTGCTTTTGGCTT+AGG | + | chr8_2:21449143-21449162 | Msa1239580:intron | 35.0% |
| !!! | AAATTTGCTTTTGGCTTAGG+AGG | + | chr8_2:21449146-21449165 | Msa1239580:intron | 35.0% |
| AAGCATATCACTGCAGATAT+CGG | - | chr8_2:21449187-21449206 | Msa1239590:CDS | 35.0% | |
| ! | CCCAATTTTAAACCAAACCT+AGG | - | chr8_2:21449242-21449261 | Msa1239590:CDS | 35.0% |
| TTGTAATCAGTCCATGAGTT+TGG | + | chr8_2:21449458-21449477 | Msa1239580:intron | 35.0% | |
| TCCAACAACAAACTTCTGTT+TGG | + | chr8_2:21449622-21449641 | Msa1239580:intron | 35.0% | |
| !! | ACCAAACAGAAGTTTGTTGT+TGG | - | chr8_2:21449626-21449645 | Msa1239590:CDS | 35.0% |
| CATGTTGTCCCAAATTTCTT+TGG | + | chr8_2:21449673-21449692 | Msa1239580:intron | 35.0% | |
| CAAGGTTGCCAAAGAAATTT+GGG | - | chr8_2:21449684-21449703 | Msa1239590:CDS | 35.0% | |
| ACAAGGTTGCCAAAGAAATT+TGG | - | chr8_2:21449685-21449704 | Msa1239590:CDS | 35.0% | |
| AATTTCTTTGGCAACCTTGT+AGG | + | chr8_2:21449685-21449704 | Msa1239580:intron | 35.0% | |
| TTCACTTTGTTAGATGTCCA+CGG | - | chr8_2:21449854-21449873 | Msa1239590:CDS | 35.0% | |
| GGAGATGATTCTAACAATGA+CGG | - | chr8_2:21450019-21450038 | Msa1239590:CDS | 35.0% | |
| ACAATCTAAGGAATTATGGC+TGG | - | chr8_2:21450040-21450059 | None:intergenic | 35.0% | |
| CAAACTGTGAAATAAACCTG+AGG | + | chr8_2:21446566-21446585 | Msa1239580:intron | 35.0% | |
| ACTCAGACACCTAGTATATT+TGG | + | chr8_2:21446715-21446734 | Msa1239580:intron | 35.0% | |
| ATAAGTAATGCACAACATGC+TGG | + | chr8_2:21450748-21450767 | Msa1239580:intron | 35.0% | |
| GTATCTGTGCATTATAGGTT+AGG | + | chr8_2:21450864-21450883 | Msa1239580:intron | 35.0% | |
| ATCTGTGCATTATAGGTTAG+GGG | + | chr8_2:21450866-21450885 | Msa1239580:intron | 35.0% | |
| AAGGATTAAGTGTGGCTTAA+TGG | + | chr8_2:21450926-21450945 | Msa1239580:intron | 35.0% | |
| TTGAAGGATTTACTAGGAGA+TGG | + | chr8_2:21450989-21451008 | Msa1239580:CDS | 35.0% | |
| ! | GATGGAATTTTCACTGTTGA+TGG | + | chr8_2:21451007-21451026 | Msa1239580:CDS | 35.0% |
| ACTAAAGTCCCTTAACATCT+TGG | - | chr8_2:21451080-21451099 | None:intergenic | 35.0% | |
| CTGACATACCACATAAAAGA+AGG | - | chr8_2:21451335-21451354 | None:intergenic | 35.0% | |
| ! | ACTTGCAGTATCAAAAGCAT+TGG | - | chr8_2:21451487-21451506 | None:intergenic | 35.0% |
| GTTGCATAGTTGAATACAGT+AGG | - | chr8_2:21451683-21451702 | None:intergenic | 35.0% | |
| AAAGTGGAGATATTCTCTCA+AGG | + | chr8_2:21451854-21451873 | Msa1239580:intron | 35.0% | |
| GTCATATCAACCTTATGCAA+TGG | + | chr8_2:21452342-21452361 | Msa1239580:CDS | 35.0% | |
| CATATCAACCTTATGCAATG+GGG | + | chr8_2:21452344-21452363 | Msa1239580:CDS | 35.0% | |
| ! | TTTTCATCAAGCCATCTTTC+AGG | - | chr8_2:21452412-21452431 | None:intergenic | 35.0% |
| GAAAGATGGCTTGATGAAAA+TGG | + | chr8_2:21452412-21452431 | Msa1239580:CDS | 35.0% | |
| ATAAACTTGAAAGGGCTTTC+TGG | - | chr8_2:21452448-21452467 | None:intergenic | 35.0% | |
| !! | AGAAAGCCCTTTCAAGTTTA+TGG | + | chr8_2:21452447-21452466 | Msa1239580:CDS | 35.0% |
| AGGTAAATGATCGTTATAGG+GGG | + | chr8_2:21452536-21452555 | Msa1239580:intron | 35.0% | |
| ATTTCATCCCTAAGGACATA+CGG | - | chr8_2:21452618-21452637 | None:intergenic | 35.0% | |
| AAGTCAACATTTCATCCCTA+AGG | - | chr8_2:21452626-21452645 | None:intergenic | 35.0% | |
| !! | GGATGAAATGTTGACTTCAT+TGG | + | chr8_2:21452629-21452648 | Msa1239580:intron | 35.0% |
| CCACCTTGATATATAGTCAA+AGG | - | chr8_2:21452802-21452821 | None:intergenic | 35.0% | |
| CCTTTGACTATATATCAAGG+TGG | + | chr8_2:21452799-21452818 | Msa1239580:intron | 35.0% | |
| AGTTTGATTGAAATGCATGC+AGG | + | chr8_2:21452926-21452945 | Msa1239580:intron | 35.0% | |
| !! | AATCCATGATGGACGGAAAT+GGG | - | chr8_2:21445503-21445522 | None:intergenic | 40.0% |
| !! | AAATCCATGATGGACGGAAA+TGG | - | chr8_2:21445504-21445523 | None:intergenic | 40.0% |
| !! | AAGAAGTATCATCCTGTTGC+TGG | + | chr8_2:21445627-21445646 | Msa1239580:CDS | 40.0% |
| TACTGTCCAAAAATCAGACC+TGG | + | chr8_2:21445959-21445978 | Msa1239580:intron | 40.0% | |
| ACTGTCCAAAAATCAGACCT+GGG | + | chr8_2:21445960-21445979 | Msa1239580:intron | 40.0% | |
| ! | TATGACCCAGGTCTGATTTT+TGG | - | chr8_2:21445968-21445987 | None:intergenic | 40.0% |
| ! | GGTGAATATGGTTTTCCTGA+TGG | + | chr8_2:21446342-21446361 | Msa1239580:intron | 40.0% |
| TCAAATGGAAAGGGAAACCA+AGG | - | chr8_2:21446375-21446394 | None:intergenic | 40.0% | |
| TGGTTTCCCTTTCCATTTGA+AGG | + | chr8_2:21446375-21446394 | Msa1239580:intron | 40.0% | |
| CATCCGCAACAACACTTATT+AGG | - | chr8_2:21446517-21446536 | None:intergenic | 40.0% | |
| AGAGGAACCTGTTGTATTCT+GGG | - | chr8_2:21446642-21446661 | None:intergenic | 40.0% | |
| AGAATACAACAGGTTCCTCT+CGG | + | chr8_2:21446642-21446661 | Msa1239580:intron | 40.0% | |
| TTCCTTTAATGGGGGAGAAA+CGG | - | chr8_2:21446846-21446865 | None:intergenic | 40.0% | |
| ATTGACAGTATATGTCACGC+TGG | - | chr8_2:21447078-21447097 | None:intergenic | 40.0% | |
| GTTTGATGCATCACACTCAA+AGG | - | chr8_2:21447269-21447288 | None:intergenic | 40.0% | |
| TTGAGTGTGATGCATCAAAC+TGG | + | chr8_2:21447269-21447288 | Msa1239580:intron | 40.0% | |
| !! | AGACACTTGGTGTATGTTAG+AGG | + | chr8_2:21447372-21447391 | Msa1239580:intron | 40.0% |
| AGCGATAACACGAGAATTGT+GGG | - | chr8_2:21447418-21447437 | None:intergenic | 40.0% | |
| ACCTATATGAGTGTCAAGTG+GGG | - | chr8_2:21447518-21447537 | None:intergenic | 40.0% | |
| CACCTATATGAGTGTCAAGT+GGG | - | chr8_2:21447519-21447538 | None:intergenic | 40.0% | |
| TCACCTATATGAGTGTCAAG+TGG | - | chr8_2:21447520-21447539 | None:intergenic | 40.0% | |
| TGGTTGTAGCATACACTAGA+TGG | - | chr8_2:21447545-21447564 | None:intergenic | 40.0% | |
| GATTGGAGATCCCATGAAAA+AGG | - | chr8_2:21447737-21447756 | None:intergenic | 40.0% | |
| CATGGGATCTCCAATCATAA+AGG | + | chr8_2:21447741-21447760 | Msa1239580:intron | 40.0% | |
| GGATCTCCAATCATAAAGGT+TGG | + | chr8_2:21447745-21447764 | Msa1239580:intron | 40.0% | |
| CACTAGAAAACGACAAGTGA+TGG | - | chr8_2:21447775-21447794 | None:intergenic | 40.0% | |
| !!! | CATCACTTGTCGTTTTCTAG+TGG | + | chr8_2:21447773-21447792 | Msa1239580:intron | 40.0% |
| GGGAGGAAATTGAAGGAAAT+GGG | - | chr8_2:21447805-21447824 | None:intergenic | 40.0% | |
| CATTTCCTTCAATTTCCTCC+CGG | + | chr8_2:21447804-21447823 | Msa1239580:intron | 40.0% | |
| ATTTCCTTCAATTTCCTCCC+GGG | + | chr8_2:21447805-21447824 | Msa1239580:intron | 40.0% | |
| AATTCGTAGACAAAAACCCC+GGG | - | chr8_2:21447825-21447844 | None:intergenic | 40.0% | |
| GAATTCGTAGACAAAAACCC+CGG | - | chr8_2:21447826-21447845 | None:intergenic | 40.0% | |
| GCTGTTCAACCATAACATGA+AGG | + | chr8_2:21448449-21448468 | Msa1239580:intron | 40.0% | |
| TGCTACATGTGCCTACTATT+AGG | - | chr8_2:21448854-21448873 | Msa1239590:CDS | 40.0% | |
| !! | GTACTTCTGAAGCTTACTTC+CGG | - | chr8_2:21448900-21448919 | Msa1239590:CDS | 40.0% |
| TTTACCTCCTACACTTCTGT+GGG | - | chr8_2:21448987-21449006 | Msa1239590:CDS | 40.0% | |
| AAAAATGGGTGATAGACTCG+GGG | - | chr8_2:21449043-21449062 | Msa1239590:CDS | 40.0% | |
| !! | CCCTGAGTCAAATTTGCTTT+TGG | + | chr8_2:21449137-21449156 | Msa1239580:intron | 40.0% |
| GCCAAAAGCAAATTTGACTC+AGG | - | chr8_2:21449141-21449160 | Msa1239590:CDS | 40.0% | |
| TGCAGATATCGGAAAGTGAA+TGG | - | chr8_2:21449176-21449195 | Msa1239590:CDS | 40.0% | |
| ! | AGTTACTTTGAGGGCATGAT+CGG | + | chr8_2:21449265-21449284 | Msa1239580:intron | 40.0% |
| TTGCAACTTCGCATTCCTTT+CGG | + | chr8_2:21449360-21449379 | Msa1239580:intron | 40.0% | |
| ACTCCTTGAAGAATTGAAGG+CGG | - | chr8_2:21449537-21449556 | Msa1239590:CDS | 40.0% | |
| CCAACTCCTTGAAGAATTGA+AGG | - | chr8_2:21449540-21449559 | Msa1239590:CDS | 40.0% | |
| CCTTCAATTCTTCAAGGAGT+TGG | + | chr8_2:21449537-21449556 | Msa1239580:intron | 40.0% | |
| TTGTTGGAAACTATCTACGG+TGG | - | chr8_2:21449610-21449629 | Msa1239590:CDS | 40.0% | |
| !! | GCATCTGATTTGGTTTCATC+TGG | + | chr8_2:21449800-21449819 | Msa1239580:intron | 40.0% |
| ! | ACTTCAATTCTGGAAACGTC+TGG | + | chr8_2:21449914-21449933 | Msa1239580:intron | 40.0% |
| ! | CTTCAATTCTGGAAACGTCT+GGG | + | chr8_2:21449915-21449934 | Msa1239580:intron | 40.0% |
| !! | GTCTGGGAATTGTTTTGCAT+AGG | + | chr8_2:21449931-21449950 | Msa1239580:intron | 40.0% |
| TCATCCGCAACAACAATCTA+AGG | - | chr8_2:21450052-21450071 | None:intergenic | 40.0% | |
| AGAGGAACCTGTTGTATTCT+GGG | - | chr8_2:21446642-21446661 | None:intergenic | 40.0% | |
| AGAATACAACAGGTTCCTCT+CGG | + | chr8_2:21446642-21446661 | Msa1239580:intron | 40.0% | |
| TTCCTTTAATGGGGGAGAAA+CGG | - | chr8_2:21446846-21446865 | None:intergenic | 40.0% | |
| ATTGACAGTATATGTCACGC+TGG | - | chr8_2:21447078-21447097 | None:intergenic | 40.0% | |
| AGTTCTCCACCAAGATGTTA+AGG | + | chr8_2:21451068-21451087 | Msa1239580:CDS | 40.0% | |
| GTTCTCCACCAAGATGTTAA+GGG | + | chr8_2:21451069-21451088 | Msa1239580:CDS | 40.0% | |
| AAAGTCCCTTAACATCTTGG+TGG | - | chr8_2:21451077-21451096 | None:intergenic | 40.0% | |
| ATCTGTGGAACAAGTGAAGA+AGG | + | chr8_2:21451450-21451469 | Msa1239580:CDS | 40.0% | |
| TCTGTGGAACAAGTGAAGAA+GGG | + | chr8_2:21451451-21451470 | Msa1239580:CDS | 40.0% | |
| GTTTCTCAACATTGGATCAG+AGG | + | chr8_2:21451554-21451573 | Msa1239580:CDS | 40.0% | |
| CTCAAGGTTTCTGCAAGTAA+AGG | + | chr8_2:21451870-21451889 | Msa1239580:intron | 40.0% | |
| !! | CAGCTTTTTCTTGTACTGCA+GGG | - | chr8_2:21452003-21452022 | None:intergenic | 40.0% |
| !! | ATCAAAATTAGCCTTCCCAC+AGG | - | chr8_2:21452169-21452188 | None:intergenic | 40.0% |
| CACCATCGTGCTTGTATTAA+TGG | + | chr8_2:21452197-21452216 | Msa1239580:intron | 40.0% | |
| GACCATTAATACAAGCACGA+TGG | - | chr8_2:21452202-21452221 | None:intergenic | 40.0% | |
| TGGGGAGGATGAAATTCATA+TGG | + | chr8_2:21452362-21452381 | Msa1239580:CDS | 40.0% | |
| GGGGAGGATGAAATTCATAT+GGG | + | chr8_2:21452363-21452382 | Msa1239580:CDS | 40.0% | |
| GGGAGGATGAAATTCATATG+GGG | + | chr8_2:21452364-21452383 | Msa1239580:CDS | 40.0% | |
| AGGAATTCAGACCTGAAAGA+TGG | + | chr8_2:21452398-21452417 | Msa1239580:CDS | 40.0% | |
| GGTAAATGATCGTTATAGGG+GGG | + | chr8_2:21452537-21452556 | Msa1239580:intron | 40.0% | |
| TTTCATCCCTAAGGACATAC+GGG | - | chr8_2:21452617-21452636 | None:intergenic | 40.0% | |
| !! | ACATGGTAATGGAGGTTCTA+GGG | - | chr8_2:21452829-21452848 | None:intergenic | 40.0% |
| !! | AACATGGTAATGGAGGTTCT+AGG | - | chr8_2:21452830-21452849 | None:intergenic | 40.0% |
| ATGGTGAAGGTGATGACTTG+CGG | - | chr8_2:21445480-21445499 | None:intergenic | 45.0% | |
| TTGAATACTGTGCCAGCAAC+AGG | - | chr8_2:21445642-21445661 | None:intergenic | 45.0% | |
| GGTCATATACAGCTGCAGTA+AGG | + | chr8_2:21445981-21446000 | Msa1239580:intron | 45.0% | |
| !! | CAGTAAGGTGTTGTAGCTGT+AGG | + | chr8_2:21445996-21446015 | Msa1239580:intron | 45.0% |
| CATCTATAGCAGCGGTAAAG+TGG | - | chr8_2:21446077-21446096 | None:intergenic | 45.0% | |
| TTCCTGATGGCATTGTACCT+TGG | + | chr8_2:21446355-21446374 | Msa1239580:intron | 45.0% | |
| AACCAAGGTACAATGCCATC+AGG | - | chr8_2:21446360-21446379 | None:intergenic | 45.0% | |
| ! | TAAGTGTTGTTGCGGATGAC+CGG | + | chr8_2:21446519-21446538 | Msa1239580:intron | 45.0% |
| AGGAACCTGTTGTATTCTGG+GGG | - | chr8_2:21446640-21446659 | None:intergenic | 45.0% | |
| GAGGAACCTGTTGTATTCTG+GGG | - | chr8_2:21446641-21446660 | None:intergenic | 45.0% | |
| GAGAGGAACCTGTTGTATTC+TGG | - | chr8_2:21446643-21446662 | None:intergenic | 45.0% | |
| ! | TTCTCGTGTCTTGATAGCCT+CGG | - | chr8_2:21446679-21446698 | None:intergenic | 45.0% |
| GGGAGAAACGGTTATTCAAC+GGG | - | chr8_2:21446834-21446853 | None:intergenic | 45.0% | |
| GGGGAGAAACGGTTATTCAA+CGG | - | chr8_2:21446835-21446854 | None:intergenic | 45.0% | |
| AACCGTTTCTCCCCCATTAA+AGG | + | chr8_2:21446841-21446860 | Msa1239580:intron | 45.0% | |
| CGATAACACGAGAATTGTGG+GGG | - | chr8_2:21447416-21447435 | None:intergenic | 45.0% | |
| GCGATAACACGAGAATTGTG+GGG | - | chr8_2:21447417-21447436 | None:intergenic | 45.0% | |
| CAGCGATAACACGAGAATTG+TGG | - | chr8_2:21447419-21447438 | None:intergenic | 45.0% | |
| TATCGCTGTGTTGCGCATTT+AGG | + | chr8_2:21447431-21447450 | Msa1239580:intron | 45.0% | |
| ACAACCATACACCACCCATA+AGG | + | chr8_2:21447558-21447577 | Msa1239580:intron | 45.0% | |
| CAACCATACACCACCCATAA+GGG | + | chr8_2:21447559-21447578 | Msa1239580:intron | 45.0% | |
| TTACCATAAGCCCTTATGGG+TGG | - | chr8_2:21447572-21447591 | None:intergenic | 45.0% | |
| GGGAACCCAACCTTTATGAT+TGG | - | chr8_2:21447754-21447773 | None:intergenic | 45.0% | |
| CGGGAGGAAATTGAAGGAAA+TGG | - | chr8_2:21447806-21447825 | None:intergenic | 45.0% | |
| TTTCCTTCAATTTCCTCCCG+GGG | + | chr8_2:21447806-21447825 | Msa1239580:intron | 45.0% | |
| TTACCTCCTACACTTCTGTG+GGG | - | chr8_2:21448986-21449005 | Msa1239590:CDS | 45.0% | |
| CTTTACCTCCTACACTTCTG+TGG | - | chr8_2:21448988-21449007 | Msa1239590:CDS | 45.0% | |
| ! | CACAGAAGTGTAGGAGGTAA+AGG | + | chr8_2:21448986-21449005 | Msa1239580:intron | 45.0% |
| TCTCTTTGCACAGATGTGTC+TGG | + | chr8_2:21449013-21449032 | Msa1239580:intron | 45.0% | |
| AAAATGGGTGATAGACTCGG+GGG | - | chr8_2:21449042-21449061 | Msa1239590:CDS | 45.0% | |
| TGCTATGTGTGTGGAAAGGT+AGG | - | chr8_2:21449215-21449234 | Msa1239590:CDS | 45.0% | |
| AGGTTGCTATGTGTGTGGAA+AGG | - | chr8_2:21449219-21449238 | Msa1239590:CDS | 45.0% | |
| ACATAGCAACCTCCTAGGTT+TGG | + | chr8_2:21449227-21449246 | Msa1239580:intron | 45.0% | |
| AGTTGCAAGAGGCAAAGCTT+TGG | - | chr8_2:21449348-21449367 | Msa1239590:CDS | 45.0% | |
| AAGGAATGCGAAGTTGCAAG+AGG | - | chr8_2:21449359-21449378 | Msa1239590:CDS | 45.0% | |
| TCTCCGCCTTCAATTCTTCA+AGG | + | chr8_2:21449531-21449550 | Msa1239580:intron | 45.0% | |
| GTGGCAAATGAAAGAGGACA+AGG | - | chr8_2:21449591-21449610 | Msa1239590:CDS | 45.0% | |
| TCTACGGTGGCAAATGAAAG+AGG | - | chr8_2:21449597-21449616 | Msa1239590:CDS | 45.0% | |
| GAATGTCAAGTACACTGCTG+AGG | - | chr8_2:21449654-21449673 | Msa1239590:CDS | 45.0% | |
| CGATGTCTACTGTTCCTACA+AGG | - | chr8_2:21449702-21449721 | Msa1239590:CDS | 45.0% | |
| ! | ATGGACAGAATTTTCGGCGT+TGG | - | chr8_2:21449889-21449908 | Msa1239590:CDS | 45.0% |
| TTTGCATAGGTGACTACTGC+CGG | + | chr8_2:21449944-21449963 | Msa1239580:intron | 45.0% | |
| ! | AGATTGTTGTTGCGGATGAC+CGG | + | chr8_2:21450053-21450072 | Msa1239580:intron | 45.0% |
| AGGAACCTGTTGTATTCTGG+GGG | - | chr8_2:21446640-21446659 | None:intergenic | 45.0% | |
| GAGGAACCTGTTGTATTCTG+GGG | - | chr8_2:21446641-21446660 | None:intergenic | 45.0% | |
| GAGAGGAACCTGTTGTATTC+TGG | - | chr8_2:21446643-21446662 | None:intergenic | 45.0% | |
| ! | TTCTCGTGTCTTGATAGCCT+CGG | - | chr8_2:21446679-21446698 | None:intergenic | 45.0% |
| GGGAGAAACGGTTATTCAAC+GGG | - | chr8_2:21446834-21446853 | None:intergenic | 45.0% | |
| GGGGAGAAACGGTTATTCAA+CGG | - | chr8_2:21446835-21446854 | None:intergenic | 45.0% | |
| AACCGTTTCTCCCCCATTAA+AGG | + | chr8_2:21446841-21446860 | Msa1239580:intron | 45.0% | |
| TGCATTATAGGTTAGGGGCA+GGG | + | chr8_2:21450871-21450890 | Msa1239580:intron | 45.0% | |
| !! | TCACTGTTGATGGCGAGAAA+TGG | + | chr8_2:21451017-21451036 | Msa1239580:CDS | 45.0% |
| ACTGAACTTGACAGCATCTG+TGG | + | chr8_2:21451435-21451454 | Msa1239580:CDS | 45.0% | |
| AAGACAGACAGGTCAACACA+TGG | - | chr8_2:21451773-21451792 | None:intergenic | 45.0% | |
| TGTTGACCTGTCTGTCTTAG+CGG | + | chr8_2:21451775-21451794 | Msa1239580:intron | 45.0% | |
| TATGAACCGCTAAGACAGAC+AGG | - | chr8_2:21451784-21451803 | None:intergenic | 45.0% | |
| !! | GCAGCTTTTTCTTGTACTGC+AGG | - | chr8_2:21452004-21452023 | None:intergenic | 45.0% |
| GAGTTTCAGTGAGAACTGCA+TGG | - | chr8_2:21452126-21452145 | None:intergenic | 45.0% | |
| GCTGATGACACATTACCAGA+TGG | + | chr8_2:21452293-21452312 | Msa1239580:intron | 45.0% | |
| ATCAACCTTATGCAATGGGG+AGG | + | chr8_2:21452347-21452366 | Msa1239580:CDS | 45.0% | |
| TTCATCCTCCCCATTGCATA+AGG | - | chr8_2:21452355-21452374 | None:intergenic | 45.0% | |
| TTCATCCCTAAGGACATACG+GGG | - | chr8_2:21452616-21452635 | None:intergenic | 45.0% | |
| !!! | AATAAATCTATTTATTTTAT+TGG | + | chr8_2:21447987-21448006 | Msa1239580:intron | 5.0% |
| ! | GGTGATGACTTGCGGGTTTA+GGG | - | chr8_2:21445472-21445491 | None:intergenic | 50.0% |
| ! | AGGTGATGACTTGCGGGTTT+AGG | - | chr8_2:21445473-21445492 | None:intergenic | 50.0% |
| ! | TGGTGAAGGTGATGACTTGC+GGG | - | chr8_2:21445479-21445498 | None:intergenic | 50.0% |
| !! | CATGATGGACGGAAATGGGA+TGG | - | chr8_2:21445499-21445518 | None:intergenic | 50.0% |
| CATCCCATTTCCGTCCATCA+TGG | + | chr8_2:21445497-21445516 | Msa1239580:exon | 50.0% | |
| ACTGCAGCTGTATATGACCC+AGG | - | chr8_2:21445980-21445999 | None:intergenic | 50.0% | |
| GTGACTACGTCACTGGACTA+AGG | + | chr8_2:21446590-21446609 | Msa1239580:intron | 50.0% | |
| CAACTCCCCCAGAATACAAC+AGG | + | chr8_2:21446632-21446651 | Msa1239580:intron | 50.0% | |
| ATACAACAGGTTCCTCTCGG+TGG | + | chr8_2:21446645-21446664 | Msa1239580:intron | 50.0% | |
| ATGAAAACCAGACACGCGCA+CGG | - | chr8_2:21447457-21447476 | None:intergenic | 50.0% | |
| GCCCCACTTGACACTCATAT+AGG | + | chr8_2:21447514-21447533 | Msa1239580:intron | 50.0% | |
| AAGCCCTTATGGGTGGTGTA+TGG | - | chr8_2:21447565-21447584 | None:intergenic | 50.0% | |
| ACACCACCCATAAGGGCTTA+TGG | + | chr8_2:21447566-21447585 | Msa1239580:intron | 50.0% | |
| AAACCCCGGGAGGAAATTGA+AGG | - | chr8_2:21447812-21447831 | None:intergenic | 50.0% | |
| !! | GGAAAGGGTACTGTGATCAG+GGG | - | chr8_2:21448734-21448753 | Msa1239590:CDS | 50.0% |
| !! | GGGAAAGGGTACTGTGATCA+GGG | - | chr8_2:21448735-21448754 | Msa1239590:CDS | 50.0% |
| !! | TGGGAAAGGGTACTGTGATC+AGG | - | chr8_2:21448736-21448755 | Msa1239590:CDS | 50.0% |
| GCTCAAAGCCAAAGTCTTGC+CGG | + | chr8_2:21448878-21448897 | Msa1239580:intron | 50.0% | |
| GCTTACTTCCGGCAAGACTT+TGG | - | chr8_2:21448889-21448908 | Msa1239590:CDS | 50.0% | |
| ACTGCTGCAGTGAATGGCAA+AGG | - | chr8_2:21448927-21448946 | Msa1239590:CDS | 50.0% | |
| TCACGAACTGCTGCAGTGAA+TGG | - | chr8_2:21448933-21448952 | Msa1239590:CDS | 50.0% | |
| ! | ATCATCCCCCACAGAAGTGT+AGG | + | chr8_2:21448977-21448996 | Msa1239580:intron | 50.0% |
| TACCTCCTACACTTCTGTGG+GGG | - | chr8_2:21448985-21449004 | Msa1239590:CDS | 50.0% | |
| CTAGGAGGTTGCTATGTGTG+TGG | - | chr8_2:21449224-21449243 | Msa1239590:CDS | 50.0% | |
| CACACACATAGCAACCTCCT+AGG | + | chr8_2:21449222-21449241 | Msa1239580:intron | 50.0% | |
| CATTGAAGACGTCAGCCGAA+AGG | - | chr8_2:21449378-21449397 | Msa1239590:CDS | 50.0% | |
| CACCAGCAACAAACGCATCT+GGG | + | chr8_2:21449498-21449517 | Msa1239580:intron | 50.0% | |
| CAACAAACGCATCTGGGAGT+TGG | + | chr8_2:21449504-21449523 | Msa1239580:intron | 50.0% | |
| ! | TGTTGCTTCTGCTCTTACGG+AGG | - | chr8_2:21449831-21449850 | Msa1239590:CDS | 50.0% |
| !! | CGGTGTTGCTTCTGCTCTTA+CGG | - | chr8_2:21449834-21449853 | Msa1239590:CDS | 50.0% |
| TAAGAGCAGAAGCAACACCG+TGG | + | chr8_2:21449834-21449853 | Msa1239580:intron | 50.0% | |
| TGTTGCTACTGTTCCTCCTC+CGG | - | chr8_2:21449966-21449985 | Msa1239590:CDS | 50.0% | |
| AGGAACAGTAGCAACAGCCA+GGG | + | chr8_2:21449970-21449989 | Msa1239580:intron | 50.0% | |
| GAATGTCACAGACTCTACCC+TGG | - | chr8_2:21449990-21450009 | Msa1239590:CDS | 50.0% | |
| GTGACTACGTCACTGGACTA+AGG | + | chr8_2:21446590-21446609 | Msa1239580:intron | 50.0% | |
| CAACTCCCCCAGAATACAAC+AGG | + | chr8_2:21446632-21446651 | Msa1239580:intron | 50.0% | |
| ATACAACAGGTTCCTCTCGG+TGG | + | chr8_2:21446645-21446664 | Msa1239580:intron | 50.0% | |
| AATGCACAACATGCTGGCAG+AGG | + | chr8_2:21450754-21450773 | Msa1239580:intron | 50.0% | |
| ATGCACAACATGCTGGCAGA+GGG | + | chr8_2:21450755-21450774 | Msa1239580:intron | 50.0% | |
| GGCAGAGGGACAAAATGTCT+AGG | + | chr8_2:21450769-21450788 | Msa1239580:intron | 50.0% | |
| GTGCATTATAGGTTAGGGGC+AGG | + | chr8_2:21450870-21450889 | Msa1239580:intron | 50.0% | |
| GCATTATAGGTTAGGGGCAG+GGG | + | chr8_2:21450872-21450891 | Msa1239580:intron | 50.0% | |
| ATTGCTGGGAAAGACACGAC+AGG | + | chr8_2:21451938-21451957 | Msa1239580:intron | 50.0% | |
| ACTCTATCCTGCACTTCCTG+TGG | + | chr8_2:21452150-21452169 | Msa1239580:intron | 50.0% | |
| CTCTATCCTGCACTTCCTGT+GGG | + | chr8_2:21452151-21452170 | Msa1239580:intron | 50.0% | |
| ! | CATATGGGGTGATGATGCAG+AGG | + | chr8_2:21452378-21452397 | Msa1239580:CDS | 50.0% |
| TCATCCCTAAGGACATACGG+GGG | - | chr8_2:21452615-21452634 | None:intergenic | 50.0% | |
| AGCTGGTGATCTATCAGCGT+TGG | - | chr8_2:21452738-21452757 | None:intergenic | 50.0% | |
| ACCAGCTCATCCGTAAGATG+AGG | + | chr8_2:21452751-21452770 | Msa1239580:intron | 50.0% | |
| TCCTCATCTTACGGATGAGC+TGG | - | chr8_2:21452755-21452774 | None:intergenic | 50.0% | |
| !! | TGGTAATGGAGGTTCTAGGG+TGG | - | chr8_2:21452826-21452845 | None:intergenic | 50.0% |
| GGACGGAAATGGGATGGTGA+AGG | - | chr8_2:21445493-21445512 | None:intergenic | 55.0% | |
| TCGGTACGATTACCACCGAG+AGG | - | chr8_2:21446660-21446679 | None:intergenic | 55.0% | |
| TCTCGGTGGTAATCGTACCG+AGG | + | chr8_2:21446659-21446678 | Msa1239580:intron | 55.0% | |
| TCGTAGACAAAAACCCCGGG+AGG | - | chr8_2:21447822-21447841 | None:intergenic | 55.0% | |
| ! | ATCCCCCACAGAAGTGTAGG+AGG | + | chr8_2:21448980-21448999 | Msa1239580:intron | 55.0% |
| ! | AAAACAATGCGCGCCGACAG+AGG | - | chr8_2:21449304-21449323 | Msa1239590:CDS | 55.0% |
| ! | TCTGTCGGCGCGCATTGTTT+TGG | + | chr8_2:21449303-21449322 | Msa1239580:intron | 55.0% |
| GCACCAGCAACAAACGCATC+TGG | + | chr8_2:21449497-21449516 | Msa1239580:intron | 55.0% | |
| ! | CTCCCAGATGCGTTTGTTGC+TGG | - | chr8_2:21449503-21449522 | Msa1239590:CDS | 55.0% |
| GAGGAACAGTAGCAACAGCC+AGG | + | chr8_2:21449969-21449988 | Msa1239580:intron | 55.0% | |
| TCGGTACGATTACCACCGAG+AGG | - | chr8_2:21446660-21446679 | None:intergenic | 55.0% | |
| TCTCGGTGGTAATCGTACCG+AGG | + | chr8_2:21446659-21446678 | Msa1239580:intron | 55.0% | |
| TTATAGGTTAGGGGCAGGGG+CGG | + | chr8_2:21450875-21450894 | Msa1239580:intron | 55.0% | |
| ATCCTGCACTTCCTGTGGGA+AGG | + | chr8_2:21452155-21452174 | Msa1239580:intron | 55.0% | |
| CATCCCTAAGGACATACGGG+GGG | - | chr8_2:21452614-21452633 | None:intergenic | 55.0% | |
| CAGTGACGTAGTCACGCCTC+AGG | - | chr8_2:21446585-21446604 | None:intergenic | 60.0% | |
| CTGAGGCGTGACTACGTCAC+TGG | + | chr8_2:21446583-21446602 | Msa1239580:intron | 60.0% | |
| GGGGGAGTTGCGCAATTCTG+CGG | - | chr8_2:21446622-21446641 | None:intergenic | 60.0% | |
| ! | TTGTGGGGGTGTGATGCGAG+TGG | - | chr8_2:21447402-21447421 | None:intergenic | 60.0% |
| ATTTAGGCCGTGCGCGTGTC+TGG | + | chr8_2:21447447-21447466 | Msa1239580:intron | 60.0% | |
| CGCTTGCATGAGACTGTGGC+GGG | - | chr8_2:21447494-21447513 | None:intergenic | 60.0% | |
| CCGCTTGCATGAGACTGTGG+CGG | - | chr8_2:21447495-21447514 | None:intergenic | 60.0% | |
| CCGCCACAGTCTCATGCAAG+CGG | + | chr8_2:21447492-21447511 | Msa1239580:intron | 60.0% | |
| ! | TGCGTTTGTTGCTGGTGCGC+TGG | - | chr8_2:21449495-21449514 | Msa1239590:CDS | 60.0% |
| GCATAGGTGACTACTGCCGG+AGG | + | chr8_2:21449947-21449966 | Msa1239580:intron | 60.0% | |
| TAGGTGACTACTGCCGGAGG+AGG | + | chr8_2:21449950-21449969 | Msa1239580:intron | 60.0% | |
| CAGTGACGTAGTCACGCCTC+AGG | - | chr8_2:21446585-21446604 | None:intergenic | 60.0% | |
| CTGAGGCGTGACTACGTCAC+TGG | + | chr8_2:21446583-21446602 | Msa1239580:intron | 60.0% | |
| GGGGGAGTTGCGCAATTCTG+CGG | - | chr8_2:21446622-21446641 | None:intergenic | 60.0% | |
| GCGAGAAATGGCGCGAGCAA+AGG | + | chr8_2:21451029-21451048 | Msa1239580:CDS | 60.0% | |
| CGACAGGCGCTACGCTTTCT+TGG | + | chr8_2:21451954-21451973 | Msa1239580:intron | 60.0% | |
| ! | AGCCTTCCCACAGGAAGTGC+AGG | - | chr8_2:21452160-21452179 | None:intergenic | 60.0% |
| ACGACCCCCCGTATGTCCTT+AGG | + | chr8_2:21452607-21452626 | Msa1239580:intron | 60.0% | |
| CGACCCCCCGTATGTCCTTA+GGG | + | chr8_2:21452608-21452627 | Msa1239580:intron | 60.0% | |
| GGGCCGCTTGCATGAGACTG+TGG | - | chr8_2:21447498-21447517 | None:intergenic | 65.0% | |
| GGGGCAGGGGCGGTTCACAT+AGG | + | chr8_2:21450885-21450904 | Msa1239580:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 21445455 | 21452965 | 21445455 | ID=Msa1239580;Name=Msa1239580 |
| chr8_2 | mRNA | 21445455 | 21452965 | 21445455 | ID=Msa1239580-mRNA-1;Parent=Msa1239580;Name=Msa1239580-mRNA-1;_AED=0.15;_eAED=0.16;_QI=61|0.4|0.5|1|0.8|1|6|0|385 |
| chr8_2 | exon | 21445455 | 21445821 | 21445455 | ID=Msa1239580-mRNA-1:exon:7675;Parent=Msa1239580-mRNA-1 |
| chr8_2 | exon | 21450968 | 21451183 | 21450968 | ID=Msa1239580-mRNA-1:exon:7676;Parent=Msa1239580-mRNA-1 |
| chr8_2 | exon | 21451384 | 21451674 | 21451384 | ID=Msa1239580-mRNA-1:exon:7677;Parent=Msa1239580-mRNA-1 |
| chr8_2 | exon | 21451998 | 21452168 | 21451998 | ID=Msa1239580-mRNA-1:exon:7678;Parent=Msa1239580-mRNA-1 |
| chr8_2 | exon | 21452322 | 21452477 | 21452322 | ID=Msa1239580-mRNA-1:exon:7679;Parent=Msa1239580-mRNA-1 |
| chr8_2 | exon | 21452948 | 21452965 | 21452948 | ID=Msa1239580-mRNA-1:exon:7680;Parent=Msa1239580-mRNA-1 |
| chr8_2 | five_prime_UTR | 21445455 | 21445515 | 21445455 | ID=Msa1239580-mRNA-1:five_prime_utr;Parent=Msa1239580-mRNA-1 |
| chr8_2 | CDS | 21445516 | 21445821 | 21445516 | ID=Msa1239580-mRNA-1:cds;Parent=Msa1239580-mRNA-1 |
| chr8_2 | CDS | 21450968 | 21451183 | 21450968 | ID=Msa1239580-mRNA-1:cds;Parent=Msa1239580-mRNA-1 |
| chr8_2 | CDS | 21451384 | 21451674 | 21451384 | ID=Msa1239580-mRNA-1:cds;Parent=Msa1239580-mRNA-1 |
| chr8_2 | CDS | 21451998 | 21452168 | 21451998 | ID=Msa1239580-mRNA-1:cds;Parent=Msa1239580-mRNA-1 |
| chr8_2 | CDS | 21452322 | 21452477 | 21452322 | ID=Msa1239580-mRNA-1:cds;Parent=Msa1239580-mRNA-1 |
| chr8_2 | CDS | 21452948 | 21452965 | 21452948 | ID=Msa1239580-mRNA-1:cds;Parent=Msa1239580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
