AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0545050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545050 MtrunA17_Chr4g0025621 98.056 360 7 0 1 360 1 360 0.0 718
Msa0545050 MtrunA17_Chr4g0025661 67.697 356 113 2 3 357 6 360 0.0 506
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545050 AT5G22140.1 64.972 354 123 1 4 357 12 364 2.70e-170 479
Msa0545050 AT3G44190.1 62.994 354 130 1 4 357 12 364 7.81e-169 475
Msa0545050 AT3G44190.2 63.344 311 113 1 47 357 1 310 1.91e-146 416
Msa0545050 AT5G22140.2 64.309 311 110 1 47 357 1 310 3.29e-146 416

Find 72 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAATAGTTTCAGATTCT+TGG 0.196415 4_1:+34488103 None:intergenic
AAGTCTTTCGGTCCTTGTTT+TGG 0.248727 4_1:+34489572 None:intergenic
AATGTCTTTCTTGAAGCTTT+TGG 0.265463 4_1:+34488790 None:intergenic
AAATACTACTACAGGTATAT+TGG 0.304020 4_1:+34487770 None:intergenic
ACTCCTTCACAAATGAAAAT+AGG 0.306830 4_1:-34488711 Msa0545050:CDS
CTTCAAGAAAGACATTAAAA+TGG 0.321115 4_1:-34488783 Msa0545050:CDS
ACAATTGTTGGAAGGCTTCC+TGG 0.324524 4_1:-34487975 Msa0545050:CDS
TTCAGATTCAGTTATGTTGA+TGG 0.355713 4_1:+34489668 None:intergenic
GGAGCGAAAGAACGTAAATT+AGG 0.359944 4_1:-34488074 Msa0545050:CDS
TCAAGATTGCTAGAATATAT+TGG 0.361205 4_1:-34488814 Msa0545050:CDS
CCAAGTGAAACAATAGATAT+TGG 0.377879 4_1:+34488032 None:intergenic
TTTCCTTTCATGACAATTGT+TGG 0.378561 4_1:-34487987 Msa0545050:CDS
GAAAAGAAAGTTGTGATTAT+AGG 0.392457 4_1:-34490679 Msa0545050:CDS
ATTGCTTACCTCCTTTGTAT+TGG 0.393585 4_1:+34489547 None:intergenic
GATTATCTTGTTATCGCAAC+TGG 0.394119 4_1:-34489612 Msa0545050:CDS
ATTATAGGAGGTGGTGTTGC+TGG 0.401428 4_1:-34490664 Msa0545050:CDS
TTTGTATTGGTCAAGTCTTT+CGG 0.415825 4_1:+34489560 None:intergenic
CTTCCTGGTATGATCAAGTC+TGG 0.422078 4_1:-34487960 Msa0545050:CDS
AAGTCTGGAGATTTGTTTGT+TGG 0.437062 4_1:-34487945 Msa0545050:CDS
GGGAAAACAAGAAAGGGATT+AGG 0.446814 4_1:-34487924 Msa0545050:CDS
AGTCTGGAGATTTGTTTGTT+GGG 0.447804 4_1:-34487944 Msa0545050:CDS
GATGAGTACTTGAGAGTGAA+GGG 0.449684 4_1:-34488553 Msa0545050:CDS
AGATTCCATGGGCAAGTTTG+AGG 0.451458 4_1:-34489776 Msa0545050:CDS
GTTTGTTGGGAAAACAAGAA+AGG 0.452444 4_1:-34487931 Msa0545050:CDS
AATCTGAAACTATTGATAGA+AGG 0.453316 4_1:-34488098 Msa0545050:CDS
TGCGATAACAAGATAATCAT+AGG 0.455029 4_1:+34489617 None:intergenic
GATTCCATGGGCAAGTTTGA+GGG 0.459319 4_1:-34489775 Msa0545050:CDS
TTTGTTGGGAAAACAAGAAA+GGG 0.460435 4_1:-34487930 Msa0545050:CDS
CCAATATCTATTGTTTCACT+TGG 0.467044 4_1:-34488032 Msa0545050:CDS
CATAGAGAATATTTCACAAA+AGG 0.477184 4_1:-34489711 Msa0545050:CDS
CATTAAAATGGCTTCAATCA+AGG 0.485208 4_1:-34488771 Msa0545050:CDS
AAAGTGACTATAGTGCATAA+AGG 0.487929 4_1:-34488838 Msa0545050:CDS
CTCTCAAGTACTCATCAACT+TGG 0.488733 4_1:+34488560 None:intergenic
CTTTCATGACAATTGTTGGA+AGG 0.497870 4_1:-34487983 Msa0545050:CDS
ACAGGTATATTGGAATTCAA+TGG 0.500340 4_1:+34487780 None:intergenic
ATTGTCGGTGGAGGTCCAAC+TGG 0.506007 4_1:-34488904 Msa0545050:CDS
TGATAAACAAATACTACTAC+AGG 0.510236 4_1:+34487762 None:intergenic
GATTACTGTCCTTTCTGCAA+AGG 0.514545 4_1:+34489737 None:intergenic
TGTTATCGCAACTGGTCATA+CGG 0.523541 4_1:-34489604 Msa0545050:CDS
TGATGAGTACTTGAGAGTGA+AGG 0.525012 4_1:-34488554 Msa0545050:CDS
AGGACATATCAAACTTCAGT+TGG 0.525563 4_1:-34488691 Msa0545050:CDS
GATAATCATAGGCAATTTCA+CGG 0.532473 4_1:+34489628 None:intergenic
CCAAGCCATGCTGTAGCAAG+TGG 0.538403 4_1:+34488625 None:intergenic
TCTGAAGTCTTCACTGCTGA+TGG 0.538947 4_1:-34489651 Msa0545050:CDS
CCACTTGCTACAGCATGGCT+TGG 0.540166 4_1:-34488625 Msa0545050:CDS
ATGGGCAAGTTTGAGGGCAA+TGG 0.542856 4_1:-34489769 Msa0545050:CDS
GTTTCACTTGGAAGAAAACA+TGG 0.548086 4_1:-34488020 Msa0545050:CDS
CTTCCAACAATTGTCATGAA+AGG 0.551683 4_1:+34487984 None:intergenic
GGCAAGTTTGAGGGCAATGG+TGG 0.556542 4_1:-34489766 Msa0545050:CDS
TGGAGCCATCCTTTGCAGAA+AGG 0.564597 4_1:-34489746 Msa0545050:CDS
ACTGTCCTTTCTGCAAAGGA+TGG 0.565164 4_1:+34489741 None:intergenic
AAAGTTGTGATTATAGGAGG+TGG 0.565821 4_1:-34490673 Msa0545050:CDS
AAAGATGATTTGGATGGTCA+TGG 0.566723 4_1:-34488589 Msa0545050:CDS
AGTGAAACAATAGATATTGG+TGG 0.570389 4_1:+34488035 None:intergenic
AGTACTTGAGAGTGAAGGGA+AGG 0.576975 4_1:-34488549 Msa0545050:CDS
AAGAAAGTTGTGATTATAGG+AGG 0.578925 4_1:-34490676 Msa0545050:CDS
TCTCCAGACTTGATCATACC+AGG 0.579617 4_1:+34487957 None:intergenic
GCTGCTAGCTCGACACCAGT+TGG 0.587572 4_1:+34488889 None:intergenic
TTTCTGAAAGATGATTTGGA+TGG 0.601708 4_1:-34488595 Msa0545050:CDS
CTGAAACTATTGATAGAAGG+AGG 0.602874 4_1:-34488095 Msa0545050:CDS
CGGAATCTATCCCCAAAACA+AGG 0.611323 4_1:-34489584 Msa0545050:CDS
AACATACACAAATAATAACT+AGG 0.612632 4_1:+34487835 None:intergenic
ATTGCCCTCAAACTTGCCCA+TGG 0.614496 4_1:+34489771 None:intergenic
ATGATTTGGATGGTCATGGA+AGG 0.615413 4_1:-34488585 Msa0545050:CDS
ACGTAAATTAGGTACTTACA+AGG 0.616980 4_1:-34488063 Msa0545050:CDS
CGAGCTAGCAGCAGAGATTG+CGG 0.623893 4_1:-34488878 Msa0545050:CDS
GGAAACCACTTGCTACAGCA+TGG 0.653025 4_1:-34488630 Msa0545050:CDS
GAAAGACTTGACCAATACAA+AGG 0.653500 4_1:-34489558 Msa0545050:CDS
TGATGGCACTTGATATAACA+AGG 0.655923 4_1:+34489685 None:intergenic
AAACAAGGAGTGTATGCACA+AGG 0.668753 4_1:-34488143 Msa0545050:CDS
AGACTTGACCAATACAAAGG+AGG 0.681103 4_1:-34489555 Msa0545050:intron
ATGTTACAGGAAATAAAACA+AGG 0.698106 4_1:-34488158 Msa0545050:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAAAGATAAAATAAAAA+TGG - chr4_1:34487775-34487794 Msa0545050:three_prime_UTR 10.0%
!!! CATTTATTTAAAACATTATA+TGG - chr4_1:34488611-34488630 Msa0545050:CDS 10.0%
!!! AATTAAGATTTTTTAACATT+AGG + chr4_1:34490588-34490607 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAGAGCA+TGG + chr4_1:34487933-34487952 None:intergenic 15.0%
!!! TGTGTTAAATTTAATTTGAA+AGG - chr4_1:34487995-34488014 Msa0545050:CDS 15.0%
!!! TAAACTAAAATTCAACTTTT+TGG + chr4_1:34488149-34488168 None:intergenic 15.0%
!!! TTTAGTTTAGAATTTTGATA+TGG - chr4_1:34488160-34488179 Msa0545050:intron 15.0%
!! AAAAAATCTGTATTGAAATA+TGG + chr4_1:34489313-34489332 None:intergenic 15.0%
!!! GAATTTCATATATCTTTTAT+TGG + chr4_1:34490006-34490025 None:intergenic 15.0%
!!! ATCAAAATTTTGTATTAACT+AGG + chr4_1:34490285-34490304 None:intergenic 15.0%
!! AAAATTGAATTATATGTTAC+AGG - chr4_1:34490308-34490327 Msa0545050:intron 15.0%
!! CAAAGATAAAATAAAAATGG+TGG - chr4_1:34487778-34487797 Msa0545050:three_prime_UTR 20.0%
!! GTAACTAAAATAATATCGAT+TGG - chr4_1:34488017-34488036 Msa0545050:CDS 20.0%
!! TATATTCTTTCTCTATGAAT+TGG - chr4_1:34488113-34488132 Msa0545050:CDS 20.0%
!! AATTCTAGCAATTAATAGTA+TGG + chr4_1:34489221-34489240 None:intergenic 20.0%
!! TACTATTAATTGCTAGAATT+TGG - chr4_1:34489221-34489240 Msa0545050:intron 20.0%
!!! ATACACATTTTCTATGTATA+GGG - chr4_1:34489828-34489847 Msa0545050:intron 20.0%
!! AACATACACAAATAATAACT+AGG + chr4_1:34490647-34490666 None:intergenic 20.0%
! GAAAAGAAAGTTGTGATTAT+AGG - chr4_1:34487800-34487819 Msa0545050:three_prime_UTR 25.0%
!! AGATAAGTAAAGACTAGTTA+AGG + chr4_1:34488072-34488091 None:intergenic 25.0%
!!! TTAGAATTTTGATATGGTAC+TGG - chr4_1:34488166-34488185 Msa0545050:intron 25.0%
! TCATGCAGTGATTATTTATT+TGG - chr4_1:34488242-34488261 Msa0545050:intron 25.0%
! TAGTAAAATGTTGACAAATG+TGG - chr4_1:34488475-34488494 Msa0545050:intron 25.0%
!! ACCACAATTTAAAACTGTAT+CGG - chr4_1:34488551-34488570 Msa0545050:CDS 25.0%
!! CTTTTGTGAAATATTCTCTA+TGG + chr4_1:34488770-34488789 None:intergenic 25.0%
! CATAGAGAATATTTCACAAA+AGG - chr4_1:34488768-34488787 Msa0545050:CDS 25.0%
! AACTGATCAAATATCAATCA+GGG - chr4_1:34488999-34489018 Msa0545050:intron 25.0%
!! TTTTCTGTCATTGAAACAAA+AGG + chr4_1:34489524-34489543 None:intergenic 25.0%
! TCAAGATTGCTAGAATATAT+TGG - chr4_1:34489665-34489684 Msa0545050:CDS 25.0%
! CTTCAAGAAAGACATTAAAA+TGG - chr4_1:34489696-34489715 Msa0545050:CDS 25.0%
!! GATACACATTTTCTATGTAT+AGG - chr4_1:34489827-34489846 Msa0545050:intron 25.0%
!!! AACTTTTCTGAAAGATGATT+TGG - chr4_1:34489880-34489899 Msa0545050:intron 25.0%
! GTATTAAAACCTTTCACTTT+CGG - chr4_1:34490245-34490264 Msa0545050:intron 25.0%
! ATGTTACAGGAAATAAAACA+AGG - chr4_1:34490321-34490340 Msa0545050:intron 25.0%
! TATCAATAGTTTCAGATTCT+TGG + chr4_1:34490379-34490398 None:intergenic 25.0%
!! AATCTGAAACTATTGATAGA+AGG - chr4_1:34490381-34490400 Msa0545050:intron 25.0%
!! GTTCATTTTGTGTTTTCTTT+CGG - chr4_1:34490670-34490689 Msa0545050:CDS 25.0%
! AAATACTACTACAGGTATAT+TGG + chr4_1:34490712-34490731 None:intergenic 25.0%
! TGATAAACAAATACTACTAC+AGG + chr4_1:34490720-34490739 None:intergenic 25.0%
!!! ACTTTTGTAAGTTTTGTGAA+TGG - chr4_1:34490745-34490764 Msa0545050:five_prime_UTR 25.0%
AAGAAAGTTGTGATTATAGG+AGG - chr4_1:34487803-34487822 Msa0545050:three_prime_UTR 30.0%
!!! GATGTTGAATAGTTTTAGCA+AGG + chr4_1:34487847-34487866 None:intergenic 30.0%
!! AAGACTAGTTAAGGATGTTT+TGG + chr4_1:34488063-34488082 None:intergenic 30.0%
GAATATAGTAATCCAGAGTT+CGG + chr4_1:34488100-34488119 None:intergenic 30.0%
ATTCTTTCTCTATGAATTGG+AGG - chr4_1:34488116-34488135 Msa0545050:CDS 30.0%
TTCTTTCTCTATGAATTGGA+GGG - chr4_1:34488117-34488136 Msa0545050:CDS 30.0%
!! ATGCTGATGGTTCTAAATTT+AGG - chr4_1:34488414-34488433 Msa0545050:intron 30.0%
!! CCACAATATAAAGGTTTTAG+AGG + chr4_1:34488525-34488544 None:intergenic 30.0%
!! CCTCTAAAACCTTTATATTG+TGG - chr4_1:34488522-34488541 Msa0545050:CDS 30.0%
AAACCTTTATATTGTGGTTG+TGG - chr4_1:34488528-34488547 Msa0545050:CDS 30.0%
!!! TCCGATACAGTTTTAAATTG+TGG + chr4_1:34488555-34488574 None:intergenic 30.0%
!! TATGGAACTTGTTGTGTAAA+TGG - chr4_1:34488629-34488648 Msa0545050:CDS 30.0%
!! TAATAAGAGTTGATGAACAC+AGG - chr4_1:34488667-34488686 Msa0545050:CDS 30.0%
TTCAGATTCAGTTATGTTGA+TGG + chr4_1:34488814-34488833 None:intergenic 30.0%
GATAATCATAGGCAATTTCA+CGG + chr4_1:34488854-34488873 None:intergenic 30.0%
TGCGATAACAAGATAATCAT+AGG + chr4_1:34488865-34488884 None:intergenic 30.0%
! TTTGTATTGGTCAAGTCTTT+CGG + chr4_1:34488922-34488941 None:intergenic 30.0%
CAACTGATCAAATATCAATC+AGG - chr4_1:34488998-34489017 Msa0545050:intron 30.0%
TGTGATTTCTGACAATATCA+AGG + chr4_1:34489050-34489069 None:intergenic 30.0%
AAACCAAAAAACAACTGCAA+TGG + chr4_1:34489096-34489115 None:intergenic 30.0%
TATAGAGAGTCTTGAAACAA+AGG + chr4_1:34489167-34489186 None:intergenic 30.0%
TCTAGCAATTAATAGTATGG+TGG + chr4_1:34489218-34489237 None:intergenic 30.0%
TGATTGTGTGAGATTATTGA+TGG + chr4_1:34489255-34489274 None:intergenic 30.0%
ATAAAACCGAACTTGAAATC+CGG - chr4_1:34489347-34489366 Msa0545050:intron 30.0%
ACAATTGCATTTGAGTAATG+AGG - chr4_1:34489495-34489514 Msa0545050:intron 30.0%
!!! ACTATAGTCACTTTTTTGTC+AGG + chr4_1:34489635-34489654 None:intergenic 30.0%
AAAGTGACTATAGTGCATAA+AGG - chr4_1:34489641-34489660 Msa0545050:CDS 30.0%
! AATGTCTTTCTTGAAGCTTT+TGG + chr4_1:34489692-34489711 None:intergenic 30.0%
CATTAAAATGGCTTCAATCA+AGG - chr4_1:34489708-34489727 Msa0545050:CDS 30.0%
ACTCCTTCACAAATGAAAAT+AGG - chr4_1:34489768-34489787 Msa0545050:CDS 30.0%
! TGTCCTATTTTCATTTGTGA+AGG + chr4_1:34489774-34489793 None:intergenic 30.0%
! TTTCTGAAAGATGATTTGGA+TGG - chr4_1:34489884-34489903 Msa0545050:intron 30.0%
ACGTAAATTAGGTACTTACA+AGG - chr4_1:34490416-34490435 Msa0545050:intron 30.0%
AGTGAAACAATAGATATTGG+TGG + chr4_1:34490447-34490466 None:intergenic 30.0%
CCAAGTGAAACAATAGATAT+TGG + chr4_1:34490450-34490469 None:intergenic 30.0%
CCAATATCTATTGTTTCACT+TGG - chr4_1:34490447-34490466 Msa0545050:intron 30.0%
TTTCCTTTCATGACAATTGT+TGG - chr4_1:34490492-34490511 Msa0545050:intron 30.0%
TTTGTTGGGAAAACAAGAAA+GGG - chr4_1:34490549-34490568 Msa0545050:intron 30.0%
ACAGGTATATTGGAATTCAA+TGG + chr4_1:34490702-34490721 None:intergenic 30.0%
AAAGTTGTGATTATAGGAGG+TGG - chr4_1:34487806-34487825 Msa0545050:three_prime_UTR 35.0%
!!! AGTTAAGGATGTTTTGGTCA+GGG + chr4_1:34488057-34488076 None:intergenic 35.0%
!!! TAGTTAAGGATGTTTTGGTC+AGG + chr4_1:34488058-34488077 None:intergenic 35.0%
CCTGATGTCTATATATACAG+TGG + chr4_1:34488303-34488322 None:intergenic 35.0%
CCACTGTATATATAGACATC+AGG - chr4_1:34488300-34488319 Msa0545050:intron 35.0%
TTTAGAGGTCTTTGCAATTG+CGG + chr4_1:34488510-34488529 None:intergenic 35.0%
TAAAACTGTATCGGAGACAT+TGG - chr4_1:34488560-34488579 Msa0545050:CDS 35.0%
!!! AGGAGTATTTTGAGATTCCA+TGG - chr4_1:34488691-34488710 Msa0545050:CDS 35.0%
!!! GGAGTATTTTGAGATTCCAT+GGG - chr4_1:34488692-34488711 Msa0545050:CDS 35.0%
TGATGGCACTTGATATAACA+AGG + chr4_1:34488797-34488816 None:intergenic 35.0%
! GATTATCTTGTTATCGCAAC+TGG - chr4_1:34488867-34488886 Msa0545050:CDS 35.0%
GAAAGACTTGACCAATACAA+AGG - chr4_1:34488921-34488940 Msa0545050:CDS 35.0%
ATTGCTTACCTCCTTTGTAT+TGG + chr4_1:34488935-34488954 None:intergenic 35.0%
AGGTAAGCAATGATACTTAG+TGG - chr4_1:34488944-34488963 Msa0545050:intron 35.0%
ATACTTAGTGGTAACTCTCT+AGG - chr4_1:34488956-34488975 Msa0545050:intron 35.0%
! TGTGTGAGATTATTGATGGT+AGG + chr4_1:34489251-34489270 None:intergenic 35.0%
ATTGTTGGATTGAGATTGGA+CGG + chr4_1:34489374-34489393 None:intergenic 35.0%
AGTGATTGTTGGATTGAGAT+TGG + chr4_1:34489378-34489397 None:intergenic 35.0%
TTAAGCACATCAGTGATTGT+TGG + chr4_1:34489389-34489408 None:intergenic 35.0%
AGGACATATCAAACTTCAGT+TGG - chr4_1:34489788-34489807 Msa0545050:CDS 35.0%
! AAAGATGATTTGGATGGTCA+TGG - chr4_1:34489890-34489909 Msa0545050:intron 35.0%
GCGTTATAGCATTGTATCAT+AGG - chr4_1:34490142-34490161 Msa0545050:intron 35.0%
! AACTGATATTTTCCGCTATC+TGG - chr4_1:34490176-34490195 Msa0545050:intron 35.0%
! ACTGATATTTTCCGCTATCT+GGG - chr4_1:34490177-34490196 Msa0545050:intron 35.0%
!!! ACTGTTATTTTCCGCTATCT+GGG + chr4_1:34490227-34490246 None:intergenic 35.0%
!!! TACTGTTATTTTCCGCTATC+TGG + chr4_1:34490228-34490247 None:intergenic 35.0%
GTGAAAATACCGAAAGTGAA+AGG + chr4_1:34490257-34490276 None:intergenic 35.0%
CTGAAACTATTGATAGAAGG+AGG - chr4_1:34490384-34490403 Msa0545050:intron 35.0%
GTTTCACTTGGAAGAAAACA+TGG - chr4_1:34490459-34490478 Msa0545050:intron 35.0%
CTTCCAACAATTGTCATGAA+AGG + chr4_1:34490498-34490517 None:intergenic 35.0%
CTTTCATGACAATTGTTGGA+AGG - chr4_1:34490496-34490515 Msa0545050:intron 35.0%
! AAGTCTGGAGATTTGTTTGT+TGG - chr4_1:34490534-34490553 Msa0545050:intron 35.0%
! AGTCTGGAGATTTGTTTGTT+GGG - chr4_1:34490535-34490554 Msa0545050:intron 35.0%
! GTTTGTTGGGAAAACAAGAA+AGG - chr4_1:34490548-34490567 Msa0545050:intron 35.0%
AGAAAGAAAGAGAGAGCTCA+CGG + chr4_1:34487893-34487912 None:intergenic 40.0%
!!! GTTAAGGATGTTTTGGTCAG+GGG + chr4_1:34488056-34488075 None:intergenic 40.0%
TAGAATCGTGATGTGTGACT+AGG + chr4_1:34488342-34488361 None:intergenic 40.0%
GAAGACTGTATTCGACAACA+CGG + chr4_1:34488379-34488398 None:intergenic 40.0%
CAGTTTCATTACGATGCTGA+TGG - chr4_1:34488401-34488420 Msa0545050:intron 40.0%
GGTCCACAACCACAATATAA+AGG + chr4_1:34488534-34488553 None:intergenic 40.0%
TTGATGTCTGATCATAGTCG+TGG - chr4_1:34488587-34488606 Msa0545050:CDS 40.0%
!! AAGAGTTGATGAACACAGGA+AGG - chr4_1:34488671-34488690 Msa0545050:CDS 40.0%
GATTACTGTCCTTTCTGCAA+AGG + chr4_1:34488745-34488764 None:intergenic 40.0%
TGTTATCGCAACTGGTCATA+CGG - chr4_1:34488875-34488894 Msa0545050:CDS 40.0%
!!! AGTCTTTCGGTCCTTGTTTT+GGG + chr4_1:34488909-34488928 None:intergenic 40.0%
!! AAGTCTTTCGGTCCTTGTTT+TGG + chr4_1:34488910-34488929 None:intergenic 40.0%
AGACTTGACCAATACAAAGG+AGG - chr4_1:34488924-34488943 Msa0545050:CDS 40.0%
CCAAAAAACAACTGCAATGG+AGG + chr4_1:34489093-34489112 None:intergenic 40.0%
!!! CCTCCATTGCAGTTGTTTTT+TGG - chr4_1:34489090-34489109 Msa0545050:intron 40.0%
ATCTCACACAATCAGCACAA+TGG - chr4_1:34489261-34489280 Msa0545050:intron 40.0%
ACAGTTCAATCTCGAGCAAA+CGG + chr4_1:34489290-34489309 None:intergenic 40.0%
!!! GCACGTTCAGTTTTGATTGT+CGG - chr4_1:34489560-34489579 Msa0545050:CDS 40.0%
! ATGATTTGGATGGTCATGGA+AGG - chr4_1:34489894-34489913 Msa0545050:intron 40.0%
CTCTCAAGTACTCATCAACT+TGG + chr4_1:34489922-34489941 None:intergenic 40.0%
TGATGAGTACTTGAGAGTGA+AGG - chr4_1:34489925-34489944 Msa0545050:intron 40.0%
GATGAGTACTTGAGAGTGAA+GGG - chr4_1:34489926-34489945 Msa0545050:intron 40.0%
! AGGAACAACGTTTTCGCTAT+AGG - chr4_1:34489950-34489969 Msa0545050:intron 40.0%
CACTAACTGACAACAATGCA+TGG + chr4_1:34490037-34490056 None:intergenic 40.0%
CATGCATTGTTGTCAGTTAG+TGG - chr4_1:34490035-34490054 Msa0545050:intron 40.0%
TCAGTTAGTGGCTATAGTAG+CGG - chr4_1:34490047-34490066 Msa0545050:intron 40.0%
GATACGCTATTTAGCACAGA+TGG - chr4_1:34490097-34490116 Msa0545050:intron 40.0%
CTATTGTCAATCCCAGATAG+CGG - chr4_1:34490213-34490232 Msa0545050:intron 40.0%
! AAACAAGGAGTGTATGCACA+AGG - chr4_1:34490336-34490355 Msa0545050:intron 40.0%
GGAGCGAAAGAACGTAAATT+AGG - chr4_1:34490405-34490424 Msa0545050:intron 40.0%
GGGAAAACAAGAAAGGGATT+AGG - chr4_1:34490555-34490574 Msa0545050:intron 40.0%
!! ATTATAGGAGGTGGTGTTGC+TGG - chr4_1:34487815-34487834 Msa0545050:three_prime_UTR 45.0%
!!! ATGTTTTGGTCAGGGGAACT+CGG + chr4_1:34488049-34488068 None:intergenic 45.0%
TAGTAATCCAGAGTTCGGTC+AGG + chr4_1:34488095-34488114 None:intergenic 45.0%
AGATTCCATGGGCAAGTTTG+AGG - chr4_1:34488703-34488722 Msa0545050:CDS 45.0%
GATTCCATGGGCAAGTTTGA+GGG - chr4_1:34488704-34488723 Msa0545050:CDS 45.0%
ACTGTCCTTTCTGCAAAGGA+TGG + chr4_1:34488741-34488760 None:intergenic 45.0%
! TCTGAAGTCTTCACTGCTGA+TGG - chr4_1:34488828-34488847 Msa0545050:CDS 45.0%
CGGAATCTATCCCCAAAACA+AGG - chr4_1:34488895-34488914 Msa0545050:CDS 45.0%
!!! GTCTTTCGGTCCTTGTTTTG+GGG + chr4_1:34488908-34488927 None:intergenic 45.0%
CGATCTTGATTGCAGCATCA+AGG + chr4_1:34489134-34489153 None:intergenic 45.0%
TCACACAATCAGCACAATGG+TGG - chr4_1:34489264-34489283 Msa0545050:intron 45.0%
!!! CGTTCAGTTTTGATTGTCGG+TGG - chr4_1:34489563-34489582 Msa0545050:CDS 45.0%
!!! TCAGTTTTGATTGTCGGTGG+AGG - chr4_1:34489566-34489585 Msa0545050:CDS 45.0%
AGTACTTGAGAGTGAAGGGA+AGG - chr4_1:34489930-34489949 Msa0545050:intron 45.0%
CTGTGCTAAATAGCGTATCG+CGG + chr4_1:34490096-34490115 None:intergenic 45.0%
CACAGATGGTTTCCAGATAG+TGG - chr4_1:34490111-34490130 Msa0545050:intron 45.0%
TGGGATTGACAATAGCTGAC+AGG + chr4_1:34490208-34490227 None:intergenic 45.0%
ACAATTGTTGGAAGGCTTCC+TGG - chr4_1:34490504-34490523 Msa0545050:intron 45.0%
CTTCCTGGTATGATCAAGTC+TGG - chr4_1:34490519-34490538 Msa0545050:intron 45.0%
TCTCCAGACTTGATCATACC+AGG + chr4_1:34490525-34490544 None:intergenic 45.0%
CTTATCTCCTGACCGAACTC+TGG - chr4_1:34488085-34488104 Msa0545050:CDS 50.0%
ATTGCCCTCAAACTTGCCCA+TGG + chr4_1:34488711-34488730 None:intergenic 50.0%
ATGGGCAAGTTTGAGGGCAA+TGG - chr4_1:34488710-34488729 Msa0545050:CDS 50.0%
TGGAGCCATCCTTTGCAGAA+AGG - chr4_1:34488733-34488752 Msa0545050:CDS 50.0%
TCAATCAGGGTTTCAAGCCG+TGG - chr4_1:34489012-34489031 Msa0545050:intron 50.0%
!! GACGGTCCGGATTTCAAGTT+CGG + chr4_1:34489356-34489375 None:intergenic 50.0%
TGGATTGAGATTGGACGGTC+CGG + chr4_1:34489369-34489388 None:intergenic 50.0%
! GGAAACCACTTGCTACAGCA+TGG - chr4_1:34489849-34489868 Msa0545050:intron 50.0%
ACGCTGCTTAAGCCACTATC+TGG + chr4_1:34490126-34490145 None:intergenic 50.0%
GACAGGTCAATCCCAGATAG+CGG + chr4_1:34490191-34490210 None:intergenic 50.0%
GGCAAGTTTGAGGGCAATGG+TGG - chr4_1:34488713-34488732 Msa0545050:CDS 55.0%
CAAGGATCGCTACACGACCA+CGG + chr4_1:34489032-34489051 None:intergenic 55.0%
ATTGTCGGTGGAGGTCCAAC+TGG - chr4_1:34489575-34489594 Msa0545050:CDS 55.0%
CGAGCTAGCAGCAGAGATTG+CGG - chr4_1:34489601-34489620 Msa0545050:CDS 55.0%
CCAAGCCATGCTGTAGCAAG+TGG + chr4_1:34489857-34489876 None:intergenic 55.0%
! CCACTTGCTACAGCATGGCT+TGG - chr4_1:34489854-34489873 Msa0545050:intron 55.0%
GCTGCTAGCTCGACACCAGT+TGG + chr4_1:34489593-34489612 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 34487732 34490769 34487732 ID=Msa0545050;Name=Msa0545050
chr4_1 mRNA 34487732 34490769 34487732 ID=Msa0545050-mRNA-1;Parent=Msa0545050;Name=Msa0545050-mRNA-1;_AED=0.23;_eAED=0.23;_QI=62|1|1|1|1|1|4|164|360
chr4_1 exon 34487732 34488171 34487732 ID=Msa0545050-mRNA-1:exon:8785;Parent=Msa0545050-mRNA-1
chr4_1 exon 34488510 34488961 34488510 ID=Msa0545050-mRNA-1:exon:8784;Parent=Msa0545050-mRNA-1
chr4_1 exon 34489556 34489812 34489556 ID=Msa0545050-mRNA-1:exon:8783;Parent=Msa0545050-mRNA-1
chr4_1 exon 34490610 34490769 34490610 ID=Msa0545050-mRNA-1:exon:8782;Parent=Msa0545050-mRNA-1
chr4_1 five_prime_UTR 34490708 34490769 34490708 ID=Msa0545050-mRNA-1:five_prime_utr;Parent=Msa0545050-mRNA-1
chr4_1 CDS 34490610 34490707 34490610 ID=Msa0545050-mRNA-1:cds;Parent=Msa0545050-mRNA-1
chr4_1 CDS 34489556 34489812 34489556 ID=Msa0545050-mRNA-1:cds;Parent=Msa0545050-mRNA-1
chr4_1 CDS 34488510 34488961 34488510 ID=Msa0545050-mRNA-1:cds;Parent=Msa0545050-mRNA-1
chr4_1 CDS 34487896 34488171 34487896 ID=Msa0545050-mRNA-1:cds;Parent=Msa0545050-mRNA-1
chr4_1 three_prime_UTR 34487732 34487895 34487732 ID=Msa0545050-mRNA-1:three_prime_utr;Parent=Msa0545050-mRNA-1
Gene Sequence

>Msa0545050

ATGGTGGAAAAGAAAGTTGTGATTATAGGAGGTGGTGTTGCTGGTGCTGTCCTTGCTAAAACTATTCAACATCATGCTAATGTCACTCTTATTGATCCGAAGGAGTATTTTGAGATTCCATGGGCAAGTTTGAGGGCAATGGTGGAGCCATCCTTTGCAGAAAGGACAGTAATCAACCATAGAGAATATTTCACAAAAGGTGACCTTGTTATATCAAGTGCCATCAACATAACTGAATCTGAAGTCTTCACTGCTGATGGCCGTGAAATTGCCTATGATTATCTTGTTATCGCAACTGGTCATACGGAATCTATCCCCAAAACAAGGACCGAAAGACTTGACCAATACAAAGGAGAAAATACAAAGATAAAATCAGCACGTTCAGTTTTGATTGTCGGTGGAGGTCCAACTGGTGTCGAGCTAGCAGCAGAGATTGCGGTTGATTTTCCTGACAAAAAAGTGACTATAGTGCATAAAGGATCAAGATTGCTAGAATATATTGGACCAAAAGCTTCAAGAAAGACATTAAAATGGCTTCAATCAAGGAAAGTTGATGTGAAATTTGAGCAATCAGTTGACTTAGACTCCTTCACAAATGAAAATAGGACATATCAAACTTCAGTTGGAGAGAGTATAGAAGCAGATACACATTTTCTATGTATAGGGAAACCACTTGCTACAGCATGGCTTGGTGAAACTTTTCTGAAAGATGATTTGGATGGTCATGGAAGGATCCAAGTTGATGAGTACTTGAGAGTGAAGGGAAGGAACAACGTTTTCGCTATAGGAGACATTACAGATATTCAAGAAATAAAACAAGGAGTGTATGCACAAGGTCATGCTCAATTAGTTGCCAAGAATCTGAAACTATTGATAGAAGGAGGAGCGAAAGAACGTAAATTAGGTACTTACAAGGCACAACCACCAATATCTATTGTTTCACTTGGAAGAAAACATGGTGTTGCACAATTTCCTTTCATGACAATTGTTGGAAGGCTTCCTGGTATGATCAAGTCTGGAGATTTGTTTGTTGGGAAAACAAGAAAGGGATTAGGACTTGAACCTAATGTTAAAAAATCTTAA

Protein sequence

>Msa0545050

MVEKKVVIIGGGVAGAVLAKTIQHHANVTLIDPKEYFEIPWASLRAMVEPSFAERTVINHREYFTKGDLVISSAINITESEVFTADGREIAYDYLVIATGHTESIPKTRTERLDQYKGENTKIKSARSVLIVGGGPTGVELAAEIAVDFPDKKVTIVHKGSRLLEYIGPKASRKTLKWLQSRKVDVKFEQSVDLDSFTNENRTYQTSVGESIEADTHFLCIGKPLATAWLGETFLKDDLDGHGRIQVDEYLRVKGRNNVFAIGDITDIQEIKQGVYAQGHAQLVAKNLKLLIEGGAKERKLGTYKAQPPISIVSLGRKHGVAQFPFMTIVGRLPGMIKSGDLFVGKTRKGLGLEPNVKKS*