Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241440 | XP_003628014.1 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241440 | sp|Q2YDP3|NC2A_BOVIN | 45.185 | 135 | 71 | 1 | 2 | 136 | 5 | 136 | 1.77e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241440 | G7LID3 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1241440 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1241440 | Msa1241450 | 0.932368 | 9.452818e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241440 | MtrunA17_Chr8g0354151 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| Msa1241440 | MtrunA17_Chr3g0081161 | 69.831 | 295 | 73 | 6 | 1 | 294 | 1 | 280 | 6.38e-128 | 366 |
| Msa1241440 | MtrunA17_Chr5g0441241 | 43.750 | 288 | 135 | 9 | 18 | 293 | 1 | 273 | 5.71e-51 | 169 |
| Msa1241440 | MtrunA17_Chr2g0288481 | 38.202 | 89 | 52 | 1 | 1 | 86 | 75 | 163 | 6.78e-12 | 64.3 |
| Msa1241440 | MtrunA17_Chr3g0132191 | 37.975 | 79 | 49 | 0 | 8 | 86 | 55 | 133 | 1.06e-11 | 63.5 |
| Msa1241440 | MtrunA17_Chr1g0191681 | 37.179 | 78 | 49 | 0 | 9 | 86 | 102 | 179 | 1.38e-11 | 63.5 |
| Msa1241440 | MtrunA17_Chr7g0272991 | 37.179 | 78 | 49 | 0 | 9 | 86 | 102 | 179 | 1.68e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241440 | AT3G12480.1 | 47.588 | 311 | 117 | 9 | 1 | 294 | 1 | 282 | 2.10e-69 | 218 |
| Msa1241440 | AT5G19490.1 | 62.857 | 140 | 39 | 4 | 1 | 137 | 1 | 130 | 9.12e-51 | 169 |
| Msa1241440 | AT1G54830.2 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 6.11e-12 | 64.3 |
| Msa1241440 | AT1G54830.3 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 6.11e-12 | 64.3 |
| Msa1241440 | AT1G54830.1 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 6.11e-12 | 64.3 |
| Msa1241440 | AT5G63470.2 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.35e-11 | 63.9 |
| Msa1241440 | AT5G63470.1 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.35e-11 | 63.9 |
| Msa1241440 | AT1G08970.3 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.46e-11 | 63.5 |
| Msa1241440 | AT1G08970.4 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.46e-11 | 63.5 |
| Msa1241440 | AT1G08970.2 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.46e-11 | 63.5 |
| Msa1241440 | AT1G08970.1 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.46e-11 | 63.5 |
| Msa1241440 | AT3G48590.1 | 37.975 | 79 | 49 | 0 | 8 | 86 | 65 | 143 | 1.52e-11 | 63.5 |
| Msa1241440 | AT1G56170.1 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.61e-11 | 61.2 |
| Msa1241440 | AT1G56170.2 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.61e-11 | 61.2 |
Find 111 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTATCTGTAGTATTT+TGG | 0.175216 | 8_2:+25008503 | None:intergenic |
| TGAACTTCCATCTTTGAAAA+AGG | 0.232386 | 8_2:+25007781 | None:intergenic |
| TGGCATTCAGATCAATATTA+AGG | 0.272737 | 8_2:+25008398 | None:intergenic |
| GGCTTCAGGATTAGCGGCTT+TGG | 0.273888 | 8_2:+25008315 | None:intergenic |
| AATGTCCCATTTGTTTAATC+TGG | 0.276795 | 8_2:-25007983 | Msa1241440:three_prime_UTR |
| AGAACAGCAACATTATTCTT+TGG | 0.296672 | 8_2:+25008445 | None:intergenic |
| CAGTCATCATGAAGAAATTC+CGG | 0.308338 | 8_2:-25008254 | Msa1241440:CDS |
| TCACAAATGCAATGAATTCA+TGG | 0.326874 | 8_2:+25010136 | None:intergenic |
| GAACGAAAATGATGACAAAA+AGG | 0.328849 | 8_2:-25008371 | Msa1241440:CDS |
| AAAATAAAATTTACTACATA+TGG | 0.332756 | 8_2:+25007879 | None:intergenic |
| GCTTCAGGATTAGCGGCTTT+GGG | 0.341876 | 8_2:+25008316 | None:intergenic |
| GGTATCGAGCTTCTTCTTCA+TGG | 0.346522 | 8_2:+25011326 | None:intergenic |
| CACGAACCAGATTAAACAAA+TGG | 0.367554 | 8_2:+25007977 | None:intergenic |
| CCTTCTATTCCAGCTTGAGT+TGG | 0.372989 | 8_2:-25008665 | Msa1241440:intron |
| ATTCATTACAGCTAAAGCTT+TGG | 0.394482 | 8_2:-25010222 | Msa1241440:intron |
| GATCTCATCGCGTTGACCTT+AGG | 0.399268 | 8_2:-25011435 | Msa1241440:five_prime_UTR |
| AAGGGTAAATTGTAGTCTTC+GGG | 0.401128 | 8_2:-25008132 | Msa1241440:exon |
| CTTCTATTCCAGCTTGAGTT+GGG | 0.411737 | 8_2:-25008664 | Msa1241440:intron |
| AGGGGAAGAGGCCGAGGTAG+AGG | 0.414973 | 8_2:-25008622 | Msa1241440:CDS |
| AATACTCACGGCAGGGAAAC+GGG | 0.419613 | 8_2:+25011305 | None:intergenic |
| AGCAACTCACAAACTAAAAC+AGG | 0.424990 | 8_2:+25010313 | None:intergenic |
| AAATACTCACGGCAGGGAAA+CGG | 0.438741 | 8_2:+25011304 | None:intergenic |
| GAAGGGTAAATTGTAGTCTT+CGG | 0.439457 | 8_2:-25008133 | Msa1241440:exon |
| TCATGATGACTGCTGTCTGT+TGG | 0.443464 | 8_2:+25008265 | None:intergenic |
| CAGCACCACCAGCATCAGTA+TGG | 0.445315 | 8_2:+25009306 | None:intergenic |
| AGAGGCCGAGGTAGAGGAAG+AGG | 0.445372 | 8_2:-25008616 | Msa1241440:CDS |
| TCAAAGAGAGGGACATCATC+AGG | 0.446129 | 8_2:-25008566 | Msa1241440:CDS |
| GTTGGAGGAGGTTCAGAGAC+AGG | 0.449170 | 8_2:+25008283 | None:intergenic |
| CATCCATTCGCGTACCAAGC+TGG | 0.451375 | 8_2:+25008179 | None:intergenic |
| TGAGAGTAACACGTTGGTTA+CGG | 0.453701 | 8_2:+25011545 | None:intergenic |
| AGTCATCATGAAGAAATTCC+GGG | 0.458892 | 8_2:-25008253 | Msa1241440:CDS |
| AGTGAGTCAGAGTTATCAAC+AGG | 0.460372 | 8_2:+25008421 | None:intergenic |
| CGAGGTAGAGGAAGAGGAAG+AGG | 0.463525 | 8_2:-25008610 | Msa1241440:CDS |
| ACAAATGTGGCTATACTTGA+TGG | 0.465433 | 8_2:-25008487 | Msa1241440:CDS |
| CCATGACCATGGCTGTAGTC+AGG | 0.470467 | 8_2:+25009329 | None:intergenic |
| ATCCATTCGCGTACCAAGCT+GGG | 0.471142 | 8_2:+25008180 | None:intergenic |
| CGGCCTCTTCCCCTACCAGT+AGG | 0.471290 | 8_2:+25008631 | None:intergenic |
| AGAGGAAGAGGACGAGGTCG+AGG | 0.473350 | 8_2:-25008598 | Msa1241440:CDS |
| TAAATTGTAGTCTTCGGGAG+GGG | 0.475260 | 8_2:-25008127 | Msa1241440:three_prime_UTR |
| ATAACATGTCTTATGTTGAC+TGG | 0.479084 | 8_2:-25008022 | Msa1241440:three_prime_UTR |
| TGATGACTGCTGTCTGTTGG+AGG | 0.488755 | 8_2:+25008268 | None:intergenic |
| ATGAAATAACTCTTCAAAGA+GGG | 0.491656 | 8_2:-25010166 | Msa1241440:CDS |
| GGCAAGCTGCATCGAATCAA+TGG | 0.495075 | 8_2:+25008201 | None:intergenic |
| GAAGAGTTATTTCATAAGTA+CGG | 0.508808 | 8_2:+25010174 | None:intergenic |
| AGATCAGAAGAAGTAGAAGA+AGG | 0.512565 | 8_2:+25011368 | None:intergenic |
| TTGGGCCACACTAGCCCTAC+TGG | 0.513050 | 8_2:-25008646 | Msa1241440:CDS |
| CCTTTCTGAGGTGGACAAGA+TGG | 0.513246 | 8_2:-25008224 | Msa1241440:CDS |
| AGCCCTACTGGTAGGGGAAG+AGG | 0.516467 | 8_2:-25008634 | Msa1241440:CDS |
| CCACACTAGCCCTACTGGTA+GGG | 0.519565 | 8_2:-25008641 | Msa1241440:CDS |
| TCCGGGCTGGTCCCTTTCTG+AGG | 0.520532 | 8_2:-25008236 | Msa1241440:CDS |
| AAATTGTAGTCTTCGGGAGG+GGG | 0.520601 | 8_2:-25008126 | Msa1241440:three_prime_UTR |
| GATGAAGATTATGACGAGGA+AGG | 0.523023 | 8_2:-25008151 | Msa1241440:CDS |
| TAATGTATTTGACTTTCTGA+AGG | 0.523769 | 8_2:-25009369 | Msa1241440:CDS |
| GGGCTGGTCCCTTTCTGAGG+TGG | 0.523889 | 8_2:-25008233 | Msa1241440:CDS |
| TGGCTAACTTGCTGAACAGA+AGG | 0.535919 | 8_2:+25008523 | None:intergenic |
| CCCTACCAGTAGGGCTAGTG+TGG | 0.536396 | 8_2:+25008641 | None:intergenic |
| CCATCTTGTCCACCTCAGAA+AGG | 0.536812 | 8_2:+25008224 | None:intergenic |
| ACGAACCAGATTAAACAAAT+GGG | 0.537114 | 8_2:+25007978 | None:intergenic |
| GTTAAGACTTGCAGTTCCAA+TGG | 0.542652 | 8_2:+25007845 | None:intergenic |
| ACTGGTAGGGGAAGAGGCCG+AGG | 0.543075 | 8_2:-25008628 | Msa1241440:CDS |
| ATGCAAGCTGATGAAGATGT+TGG | 0.543982 | 8_2:-25010355 | Msa1241440:CDS |
| CATCTTGTCCACCTCAGAAA+GGG | 0.544706 | 8_2:+25008225 | None:intergenic |
| CAGTGATGAAGAAGCTAAGA+GGG | 0.545305 | 8_2:-25009145 | Msa1241440:CDS |
| TTGGAGGAGGTTCAGAGACA+GGG | 0.547073 | 8_2:+25008284 | None:intergenic |
| TGCCCAGCTTGGTACGCGAA+TGG | 0.547995 | 8_2:-25008182 | Msa1241440:CDS |
| TGACTGCTGTCTGTTGGAGG+AGG | 0.548420 | 8_2:+25008271 | None:intergenic |
| GTAGAAGAAGGAGAGTAAGA+AGG | 0.549279 | 8_2:+25011380 | None:intergenic |
| GAAGAGAAGAATTCCTCCTA+AGG | 0.549688 | 8_2:+25011419 | None:intergenic |
| GGTCATGGCCATACTGATGC+TGG | 0.551049 | 8_2:-25009314 | Msa1241440:CDS |
| CTCTTCCTCTTCCTCTACCT+CGG | 0.552926 | 8_2:+25008611 | None:intergenic |
| ATTAGCGGCTTCAGGATTAG+CGG | 0.555789 | 8_2:+25008309 | None:intergenic |
| CATGTTTGCAGGAAAGCTGC+AGG | 0.556670 | 8_2:-25009183 | Msa1241440:intron |
| CTCATCGCGTTGACCTTAGG+AGG | 0.557690 | 8_2:-25011432 | Msa1241440:five_prime_UTR |
| ACAGTGATGAAGAAGCTAAG+AGG | 0.558884 | 8_2:-25009146 | Msa1241440:CDS |
| AGGAAAGCTGCAGGTGATGA+TGG | 0.561033 | 8_2:-25009174 | Msa1241440:CDS |
| CCACAATGCTCTAAAACCAT+TGG | 0.566892 | 8_2:-25011583 | Msa1241440:five_prime_UTR |
| ATGAAGATTATGACGAGGAA+GGG | 0.569841 | 8_2:-25008150 | Msa1241440:CDS |
| TGAAATGAAGATATATAGAG+AGG | 0.575964 | 8_2:+25011626 | None:intergenic |
| CCTGACTACAGCCATGGTCA+TGG | 0.579794 | 8_2:-25009329 | Msa1241440:CDS |
| TGTGGAATGGATCGAAGTTG+TGG | 0.584673 | 8_2:+25011601 | None:intergenic |
| GGCCTCTTCCCCTACCAGTA+GGG | 0.586705 | 8_2:+25008632 | None:intergenic |
| TAACATGTCTTATGTTGACT+GGG | 0.587051 | 8_2:-25008021 | Msa1241440:three_prime_UTR |
| AGAGGAAGAGGAAGAGGACG+AGG | 0.587613 | 8_2:-25008604 | Msa1241440:CDS |
| CACACTAGCCCTACTGGTAG+GGG | 0.591865 | 8_2:-25008640 | Msa1241440:CDS |
| ATCATGAAGAAATTCCGGGC+TGG | 0.593923 | 8_2:-25008249 | Msa1241440:CDS |
| ACCTCAGAAAGGGACCAGCC+CGG | 0.596293 | 8_2:+25008235 | None:intergenic |
| TATGAAATAACTCTTCAAAG+AGG | 0.600363 | 8_2:-25010167 | Msa1241440:CDS |
| GGTCAACGCGATGAGATCAA+AGG | 0.600584 | 8_2:+25011440 | None:intergenic |
| AGAAGCTAAGAGGGGCAAGA+TGG | 0.603158 | 8_2:-25009136 | Msa1241440:intron |
| TGAAATAACTCTTCAAAGAG+GGG | 0.609065 | 8_2:-25010165 | Msa1241440:CDS |
| GGACGAGCTATTCAAAGAGA+GGG | 0.624122 | 8_2:-25008577 | Msa1241440:CDS |
| AGAAGGACAAGGCTCAGACT+CGG | 0.625318 | 8_2:+25008540 | None:intergenic |
| AGGACGAGCTATTCAAAGAG+AGG | 0.625357 | 8_2:-25008578 | Msa1241440:CDS |
| TCTGAAGGATGTAGTCAGCA+AGG | 0.625572 | 8_2:-25009354 | Msa1241440:CDS |
| AAGGTTCCTGACTACAGCCA+TGG | 0.627628 | 8_2:-25009335 | Msa1241440:CDS |
| CAACATAAGACATGTTATGA+CGG | 0.629815 | 8_2:+25008027 | None:intergenic |
| GGTAAATTGTAGTCTTCGGG+AGG | 0.631997 | 8_2:-25008129 | Msa1241440:exon |
| GTAAATTGTAGTCTTCGGGA+GGG | 0.637584 | 8_2:-25008128 | Msa1241440:exon |
| TTTCATAAGTACGGTCACAA+AGG | 0.638025 | 8_2:+25010183 | None:intergenic |
| CATCAGTATGGCCATGACCA+TGG | 0.639178 | 8_2:+25009318 | None:intergenic |
| AACATTGATATACAATACAC+AGG | 0.639293 | 8_2:+25007902 | None:intergenic |
| TGTTTCTGAGAGTAACACGT+TGG | 0.653603 | 8_2:+25011539 | None:intergenic |
| GCCACACTAGCCCTACTGGT+AGG | 0.654203 | 8_2:-25008642 | Msa1241440:CDS |
| CATGGCCATACTGATGCTGG+TGG | 0.661901 | 8_2:-25009311 | Msa1241440:CDS |
| TGGAGGAGGTTCAGAGACAG+GGG | 0.663154 | 8_2:+25008285 | None:intergenic |
| AGATGTTGGAAAGATAGCAT+TGG | 0.667342 | 8_2:-25010341 | Msa1241440:CDS |
| AAATACTACAGATACAAATG+TGG | 0.667589 | 8_2:-25008500 | Msa1241440:CDS |
| AGATGATGAAGATTATGACG+AGG | 0.685761 | 8_2:-25008155 | Msa1241440:CDS |
| ACTTGCTGAACAGAAGGACA+AGG | 0.703007 | 8_2:+25008529 | None:intergenic |
| GGAGGAGGTTCAGAGACAGG+GGG | 0.712756 | 8_2:+25008286 | None:intergenic |
| AGTGATGAAGAAGCTAAGAG+GGG | 0.724764 | 8_2:-25009144 | Msa1241440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAAGATAACATTTTT+TGG | - | chr8_2:25008256-25008275 | Msa1241440:CDS | 10.0% |
| !!! | TTTAATTTTAACCTAATTTT+TGG | - | chr8_2:25008288-25008307 | Msa1241440:CDS | 10.0% |
| !!! | TTAATTTTAACCTAATTTTT+GGG | - | chr8_2:25008289-25008308 | Msa1241440:CDS | 10.0% |
| !!! | TTTAATTTTAACCTAATTTT+TGG | - | chr8_2:25008288-25008307 | Msa1241440:CDS | 10.0% |
| !! | AAAATAAAATTTACTACATA+TGG | + | chr8_2:25011528-25011547 | None:intergenic | 10.0% |
| !!! | TTTGTTATTTTATACTGTTT+TGG | - | chr8_2:25008154-25008173 | Msa1241440:CDS | 15.0% |
| !!! | TTGAGTATATTTTTATTATG+TGG | - | chr8_2:25008184-25008203 | Msa1241440:CDS | 15.0% |
| !!! | TGAGTATATTTTTATTATGT+GGG | - | chr8_2:25008185-25008204 | Msa1241440:CDS | 15.0% |
| !!! | TACTTTTACTTCATTTTATT+TGG | - | chr8_2:25008423-25008442 | Msa1241440:CDS | 15.0% |
| !! | TCAAATCAAATTATCTAAAA+AGG | + | chr8_2:25009617-25009636 | None:intergenic | 15.0% |
| !! | AAAAAAAATAATAGACTACT+TGG | + | chr8_2:25009914-25009933 | None:intergenic | 15.0% |
| !! | TAAAAAACAGAAAATACTCA+CGG | + | chr8_2:25008114-25008133 | None:intergenic | 20.0% |
| !! | AACAAAAAAGATCAAAACTT+TGG | + | chr8_2:25008140-25008159 | None:intergenic | 20.0% |
| !! | TTTATGTGCTTAATTGTATT+TGG | - | chr8_2:25008224-25008243 | Msa1241440:CDS | 20.0% |
| !!! | TCATTTTATTTGGTAGTTTT+TGG | - | chr8_2:25008433-25008452 | Msa1241440:CDS | 20.0% |
| !! | AAGTACAATATCCAAAAATT+AGG | + | chr8_2:25008479-25008498 | None:intergenic | 20.0% |
| !! | TGAACCTAAAAATTTCATAT+TGG | - | chr8_2:25008739-25008758 | Msa1241440:intron | 20.0% |
| !!! | AACTCCAATATGAAATTTTT+AGG | + | chr8_2:25008746-25008765 | None:intergenic | 20.0% |
| !!! | TTACCTTTTTTTTAGTTGTT+TGG | - | chr8_2:25008774-25008793 | Msa1241440:intron | 20.0% |
| !! | AAATCCAAAATTGGTATTAA+CGG | + | chr8_2:25008951-25008970 | None:intergenic | 20.0% |
| !! | AATTCAAAGAAATCCAAAAT+TGG | + | chr8_2:25008960-25008979 | None:intergenic | 20.0% |
| !!! | TTTTATTGAACATGTGAAAA+TGG | - | chr8_2:25009641-25009660 | Msa1241440:intron | 20.0% |
| !! | TCAAAAAATTCATAAGCATT+TGG | + | chr8_2:25009745-25009764 | None:intergenic | 20.0% |
| !! | TAGTTAAAATTAATCAGTTC+AGG | + | chr8_2:25009876-25009895 | None:intergenic | 20.0% |
| !! | TGTTTAAGAAATTAAAACAC+GGG | + | chr8_2:25010327-25010346 | None:intergenic | 20.0% |
| !! | GTGTTTAAGAAATTAAAACA+CGG | + | chr8_2:25010328-25010347 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATGGAGAAAAA+AGG | + | chr8_2:25010406-25010425 | None:intergenic | 20.0% |
| !!! | TTTTTTCTCCATAAAAAACA+AGG | - | chr8_2:25010405-25010424 | Msa1241440:intron | 20.0% |
| !!! | ATATACAACCTTGTTTTTTA+TGG | + | chr8_2:25010416-25010435 | None:intergenic | 20.0% |
| !!! | TGAAAGTATTGTTGTAATTT+GGG | + | chr8_2:25010457-25010476 | None:intergenic | 20.0% |
| !!! | ATTTTTCGAAATTTCATGTT+TGG | - | chr8_2:25010495-25010514 | Msa1241440:intron | 20.0% |
| ! | CATCATAAAACCCAAAAATT+AGG | + | chr8_2:25008302-25008321 | None:intergenic | 25.0% |
| !!! | ATGCTTGATTATTGATTTGA+TGG | - | chr8_2:25008526-25008545 | Msa1241440:CDS | 25.0% |
| !!! | TGATGTTATCATTTTTTAGC+TGG | - | chr8_2:25008557-25008576 | Msa1241440:CDS | 25.0% |
| ! | AAGCCAAACAACTAAAAAAA+AGG | + | chr8_2:25008780-25008799 | None:intergenic | 25.0% |
| !! | TTAGTTGTTTGGCTTAATTT+AGG | - | chr8_2:25008785-25008804 | Msa1241440:intron | 25.0% |
| !! | GAAGAGTTATTTCATAAGTA+CGG | + | chr8_2:25009233-25009252 | None:intergenic | 25.0% |
| ! | TATGAAATAACTCTTCAAAG+AGG | - | chr8_2:25009237-25009256 | Msa1241440:intron | 25.0% |
| ! | ATGAAATAACTCTTCAAAGA+GGG | - | chr8_2:25009238-25009257 | Msa1241440:intron | 25.0% |
| ! | AAGATTATCATCTACAACAA+TGG | - | chr8_2:25009552-25009571 | Msa1241440:intron | 25.0% |
| ! | TAAAAAGGAAAACATCTAGA+AGG | + | chr8_2:25009602-25009621 | None:intergenic | 25.0% |
| ! | AAAATTCATAAGCATTTGGT+TGG | + | chr8_2:25009741-25009760 | None:intergenic | 25.0% |
| ! | TTCTAATATCTGTTCTTGTA+TGG | - | chr8_2:25009779-25009798 | Msa1241440:intron | 25.0% |
| ! | TGTTGAAGATAAAATGAGTT+TGG | + | chr8_2:25009951-25009970 | None:intergenic | 25.0% |
| !! | TAATGTATTTGACTTTCTGA+AGG | - | chr8_2:25010035-25010054 | Msa1241440:intron | 25.0% |
| ! | TAACTACATGTATATCAGAA+AGG | + | chr8_2:25010186-25010205 | None:intergenic | 25.0% |
| ! | GTTTAAGAAATTAAAACACG+GGG | + | chr8_2:25010326-25010345 | None:intergenic | 25.0% |
| !!! | GTGAAAGTATTGTTGTAATT+TGG | + | chr8_2:25010458-25010477 | None:intergenic | 25.0% |
| ! | ACATGAAATTTCGAAAAATG+AGG | + | chr8_2:25010494-25010513 | None:intergenic | 25.0% |
| !! | AATTTCATGTTTGGAATACT+TGG | - | chr8_2:25010504-25010523 | Msa1241440:intron | 25.0% |
| !!! | AATTGCTTTTTCCTAGAATA+AGG | + | chr8_2:25010688-25010707 | None:intergenic | 25.0% |
| !! | CATTTGTATCTGTAGTATTT+TGG | + | chr8_2:25010904-25010923 | None:intergenic | 25.0% |
| ! | AAATACTACAGATACAAATG+TGG | - | chr8_2:25010904-25010923 | Msa1241440:intron | 25.0% |
| ! | AACATTGATATACAATACAC+AGG | + | chr8_2:25011505-25011524 | None:intergenic | 25.0% |
| !! | ATTTTATGCATTCAAACCAT+TGG | - | chr8_2:25011543-25011562 | Msa1241440:five_prime_UTR | 25.0% |
| !!! | AGTTAAACCTTTTTCAAAGA+TGG | - | chr8_2:25011616-25011635 | Msa1241440:five_prime_UTR | 25.0% |
| TACCTTTGGATCTGAAAAAT+GGG | - | chr8_2:25007939-25007958 | Msa1241440:three_prime_UTR | 30.0% | |
| AGCTTGATTAATGAAGTTGA+TGG | - | chr8_2:25008326-25008345 | Msa1241440:CDS | 30.0% | |
| ! | GCTTGATTAATGAAGTTGAT+GGG | - | chr8_2:25008327-25008346 | Msa1241440:CDS | 30.0% |
| !! | TTTTGAGTGATGTGGTATTA+TGG | - | chr8_2:25008350-25008369 | Msa1241440:CDS | 30.0% |
| TTAGCTGCTTAGCTTAATTA+TGG | - | chr8_2:25008394-25008413 | Msa1241440:CDS | 30.0% | |
| AGAAACACTATTTGATGTGT+TGG | - | chr8_2:25008992-25009011 | Msa1241440:intron | 30.0% | |
| TGTTGGAAACATAAATTTGC+AGG | - | chr8_2:25009009-25009028 | Msa1241440:intron | 30.0% | |
| ATTCATTACAGCTAAAGCTT+TGG | - | chr8_2:25009182-25009201 | Msa1241440:intron | 30.0% | |
| TGAAATAACTCTTCAAAGAG+GGG | - | chr8_2:25009239-25009258 | Msa1241440:intron | 30.0% | |
| TCACAAATGCAATGAATTCA+TGG | + | chr8_2:25009271-25009290 | None:intergenic | 30.0% | |
| ! | GTTAGTTTGACCACTAAAAT+GGG | + | chr8_2:25009328-25009347 | None:intergenic | 30.0% |
| ! | AGTTAGTTTGACCACTAAAA+TGG | + | chr8_2:25009329-25009348 | None:intergenic | 30.0% |
| ! | ATTATTTGATCAAGCATTGC+AGG | + | chr8_2:25009836-25009855 | None:intergenic | 30.0% |
| ATGCTTGATCAAATAATGCA+CGG | - | chr8_2:25009839-25009858 | Msa1241440:intron | 30.0% | |
| AAATAATAGACTACTTGGAC+AGG | + | chr8_2:25009909-25009928 | None:intergenic | 30.0% | |
| ATAAAATGAGTTTGGAAGGA+AGG | + | chr8_2:25009943-25009962 | None:intergenic | 30.0% | |
| GAAGATAAAATGAGTTTGGA+AGG | + | chr8_2:25009947-25009966 | None:intergenic | 30.0% | |
| !! | TTCAAACCTTCTTTTTGGAA+TGG | + | chr8_2:25010133-25010152 | None:intergenic | 30.0% |
| ! | AAGACTTCAAACCTTCTTTT+TGG | + | chr8_2:25010138-25010157 | None:intergenic | 30.0% |
| ATTCATTCCTACAAGATTTC+AGG | + | chr8_2:25010625-25010644 | None:intergenic | 30.0% | |
| ! | CTTTTTCCTAGAATAAGGAA+TGG | + | chr8_2:25010683-25010702 | None:intergenic | 30.0% |
| AGAACAGCAACATTATTCTT+TGG | + | chr8_2:25010962-25010981 | None:intergenic | 30.0% | |
| TGGCATTCAGATCAATATTA+AGG | + | chr8_2:25011009-25011028 | None:intergenic | 30.0% | |
| ! | GTCATCATTTTCGTTCATAT+TGG | + | chr8_2:25011029-25011048 | None:intergenic | 30.0% |
| GAACGAAAATGATGACAAAA+AGG | - | chr8_2:25011033-25011052 | Msa1241440:intron | 30.0% | |
| CAACATAAGACATGTTATGA+CGG | + | chr8_2:25011380-25011399 | None:intergenic | 30.0% | |
| ATAACATGTCTTATGTTGAC+TGG | - | chr8_2:25011382-25011401 | Msa1241440:five_prime_UTR | 30.0% | |
| ! | TAACATGTCTTATGTTGACT+GGG | - | chr8_2:25011383-25011402 | Msa1241440:five_prime_UTR | 30.0% |
| ! | TTATGTTGACTGGGAAAAAA+AGG | - | chr8_2:25011392-25011411 | Msa1241440:five_prime_UTR | 30.0% |
| ! | TATGTTGACTGGGAAAAAAA+GGG | - | chr8_2:25011393-25011412 | Msa1241440:five_prime_UTR | 30.0% |
| AATGTCCCATTTGTTTAATC+TGG | - | chr8_2:25011421-25011440 | Msa1241440:five_prime_UTR | 30.0% | |
| ACGAACCAGATTAAACAAAT+GGG | + | chr8_2:25011429-25011448 | None:intergenic | 30.0% | |
| !!! | TGTTAGCTTGTTGTACTTTT+AGG | - | chr8_2:25011479-25011498 | Msa1241440:five_prime_UTR | 30.0% |
| ! | TGAACTTCCATCTTTGAAAA+AGG | + | chr8_2:25011626-25011645 | None:intergenic | 30.0% |
| ! | TGAAGTGTGTTTTGTACCTT+TGG | - | chr8_2:25007925-25007944 | Msa1241440:three_prime_UTR | 35.0% |
| GTACCTTTGGATCTGAAAAA+TGG | - | chr8_2:25007938-25007957 | Msa1241440:three_prime_UTR | 35.0% | |
| !! | AACCCATTTTTCAGATCCAA+AGG | + | chr8_2:25007944-25007963 | None:intergenic | 35.0% |
| AGATCAGAAGAAGTAGAAGA+AGG | + | chr8_2:25008039-25008058 | None:intergenic | 35.0% | |
| !!! | CATTTTTTAGCTGGTTAGCT+TGG | - | chr8_2:25008566-25008585 | Msa1241440:CDS | 35.0% |
| ACATGTTGTTATGCTCAATG+TGG | + | chr8_2:25008643-25008662 | None:intergenic | 35.0% | |
| !!! | GTTATGTTGACTTTTGTGTC+CGG | + | chr8_2:25008841-25008860 | None:intergenic | 35.0% |
| CCAAAATTGGTATTAACGGT+GGG | + | chr8_2:25008947-25008966 | None:intergenic | 35.0% | |
| TCCAAAATTGGTATTAACGG+TGG | + | chr8_2:25008948-25008967 | None:intergenic | 35.0% | |
| GAAACATAAATTTGCAGGCT+CGG | - | chr8_2:25009014-25009033 | Msa1241440:intron | 35.0% | |
| AGATGTTGGAAAGATAGCAT+TGG | - | chr8_2:25009063-25009082 | Msa1241440:intron | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | + | chr8_2:25009094-25009113 | None:intergenic | 35.0% | |
| TTTCATAAGTACGGTCACAA+AGG | + | chr8_2:25009224-25009243 | None:intergenic | 35.0% | |
| ! | TCTCTGATTTCCCATTTTAG+TGG | - | chr8_2:25009315-25009334 | Msa1241440:CDS | 35.0% |
| ACTAACTCAAGAAATCAGAG+CGG | - | chr8_2:25009342-25009361 | Msa1241440:CDS | 35.0% | |
| TGAACTCAATTTATCGTCAG+TGG | - | chr8_2:25009480-25009499 | Msa1241440:intron | 35.0% | |
| ATCTGTTCTTGTATGGCTTA+AGG | - | chr8_2:25009786-25009805 | Msa1241440:intron | 35.0% | |
| GTTTACATTTGACACTCGTT+AGG | + | chr8_2:25009989-25010008 | None:intergenic | 35.0% | |
| ATCAGACCATTCCAAAAAGA+AGG | - | chr8_2:25010124-25010143 | Msa1241440:intron | 35.0% | |
| TGTGATTGATACTGACGAAA+TGG | + | chr8_2:25010360-25010379 | None:intergenic | 35.0% | |
| ! | TTGTCTTTTGCTTGCACAAA+TGG | + | chr8_2:25010601-25010620 | None:intergenic | 35.0% |
| AGACAATCCTGAAATCTTGT+AGG | - | chr8_2:25010615-25010634 | Msa1241440:intron | 35.0% | |
| TTCTAGCCATTCCTTATTCT+AGG | - | chr8_2:25010674-25010693 | Msa1241440:intron | 35.0% | |
| ACAAATGTGGCTATACTTGA+TGG | - | chr8_2:25010917-25010936 | Msa1241440:intron | 35.0% | |
| CAGTCATCATGAAGAAATTC+CGG | - | chr8_2:25011150-25011169 | Msa1241440:intron | 35.0% | |
| AGTCATCATGAAGAAATTCC+GGG | - | chr8_2:25011151-25011170 | Msa1241440:intron | 35.0% | |
| AGATGATGAAGATTATGACG+AGG | - | chr8_2:25011249-25011268 | Msa1241440:intron | 35.0% | |
| ATGAAGATTATGACGAGGAA+GGG | - | chr8_2:25011254-25011273 | Msa1241440:intron | 35.0% | |
| GAAGGGTAAATTGTAGTCTT+CGG | - | chr8_2:25011271-25011290 | Msa1241440:intron | 35.0% | |
| AAGGGTAAATTGTAGTCTTC+GGG | - | chr8_2:25011272-25011291 | Msa1241440:intron | 35.0% | |
| CACGAACCAGATTAAACAAA+TGG | + | chr8_2:25011430-25011449 | None:intergenic | 35.0% | |
| !!! | GGTTTTAGAGCATTGTGGAA+TGG | + | chr8_2:25007819-25007838 | None:intergenic | 40.0% |
| !!! | CCAATGGTTTTAGAGCATTG+TGG | + | chr8_2:25007824-25007843 | None:intergenic | 40.0% |
| !! | CCACAATGCTCTAAAACCAT+TGG | - | chr8_2:25007821-25007840 | Msa1241440:three_prime_UTR | 40.0% |
| ! | TGGTTACGGAGTTTTTGTGA+CGG | + | chr8_2:25007848-25007867 | None:intergenic | 40.0% |
| ! | TGAGAGTAACACGTTGGTTA+CGG | + | chr8_2:25007862-25007881 | None:intergenic | 40.0% |
| ! | TGTTTCTGAGAGTAACACGT+TGG | + | chr8_2:25007868-25007887 | None:intergenic | 40.0% |
| GAAGAGAAGAATTCCTCCTA+AGG | + | chr8_2:25007988-25008007 | None:intergenic | 40.0% | |
| GTAGAAGAAGGAGAGTAAGA+AGG | + | chr8_2:25008027-25008046 | None:intergenic | 40.0% | |
| AACAGAAAATACTCACGGCA+GGG | + | chr8_2:25008109-25008128 | None:intergenic | 40.0% | |
| AAACAGAAAATACTCACGGC+AGG | + | chr8_2:25008110-25008129 | None:intergenic | 40.0% | |
| !!! | TTGATGGGTTTTGAGTGATG+TGG | - | chr8_2:25008342-25008361 | Msa1241440:CDS | 40.0% |
| !! | TTTAGCTGGTTAGCTTGGTT+TGG | - | chr8_2:25008571-25008590 | Msa1241440:CDS | 40.0% |
| !! | TTAGCTGGTTAGCTTGGTTT+GGG | - | chr8_2:25008572-25008591 | Msa1241440:CDS | 40.0% |
| TCATAGACTATGTAGCACTG+AGG | + | chr8_2:25008722-25008741 | None:intergenic | 40.0% | |
| AATCCAACATGTGTCAGTGT+TGG | + | chr8_2:25008899-25008918 | None:intergenic | 40.0% | |
| CTGACACATGTTGGATTCTT+TGG | - | chr8_2:25008902-25008921 | Msa1241440:intron | 40.0% | |
| ! | CCCACCGTTAATACCAATTT+TGG | - | chr8_2:25008944-25008963 | Msa1241440:intron | 40.0% |
| ATGCAAGCTGATGAAGATGT+TGG | - | chr8_2:25009049-25009068 | Msa1241440:intron | 40.0% | |
| ! | AACTTTAAGCTGCTGTTTGC+TGG | - | chr8_2:25009138-25009157 | Msa1241440:CDS | 40.0% |
| TTATCGTCAGTGGTCATTGT+TGG | - | chr8_2:25009490-25009509 | Msa1241440:intron | 40.0% | |
| TGATCAAATAATGCACGGCT+TGG | - | chr8_2:25009844-25009863 | Msa1241440:intron | 40.0% | |
| GATCAAATAATGCACGGCTT+GGG | - | chr8_2:25009845-25009864 | Msa1241440:intron | 40.0% | |
| CTTTCCTGCAAACATGGTTT+AGG | + | chr8_2:25010217-25010236 | None:intergenic | 40.0% | |
| ACAGTGATGAAGAAGCTAAG+AGG | - | chr8_2:25010258-25010277 | Msa1241440:intron | 40.0% | |
| CAGTGATGAAGAAGCTAAGA+GGG | - | chr8_2:25010259-25010278 | Msa1241440:intron | 40.0% | |
| AGTGATGAAGAAGCTAAGAG+GGG | - | chr8_2:25010260-25010279 | Msa1241440:intron | 40.0% | |
| GGGGCTTTCACACTAATATA+AGG | + | chr8_2:25010307-25010326 | None:intergenic | 40.0% | |
| CTTCTATTCCAGCTTGAGTT+GGG | - | chr8_2:25010740-25010759 | Msa1241440:intron | 40.0% | |
| AGTGAGTCAGAGTTATCAAC+AGG | + | chr8_2:25010986-25011005 | None:intergenic | 40.0% | |
| GATGAAGATTATGACGAGGA+AGG | - | chr8_2:25011253-25011272 | Msa1241440:intron | 40.0% | |
| GTAAATTGTAGTCTTCGGGA+GGG | - | chr8_2:25011276-25011295 | Msa1241440:intron | 40.0% | |
| TAAATTGTAGTCTTCGGGAG+GGG | - | chr8_2:25011277-25011296 | Msa1241440:intron | 40.0% | |
| GTTAAGACTTGCAGTTCCAA+TGG | + | chr8_2:25011562-25011581 | None:intergenic | 40.0% | |
| TGTGGAATGGATCGAAGTTG+TGG | + | chr8_2:25007806-25007825 | None:intergenic | 45.0% | |
| !!! | GAGTTTTTGTGACGGACCAA+TGG | + | chr8_2:25007840-25007859 | None:intergenic | 45.0% |
| ! | GGTATCGAGCTTCTTCTTCA+TGG | + | chr8_2:25008081-25008100 | None:intergenic | 45.0% |
| AAATACTCACGGCAGGGAAA+CGG | + | chr8_2:25008103-25008122 | None:intergenic | 45.0% | |
| TGTCCTACATCGACACATGT+TGG | - | chr8_2:25008693-25008712 | Msa1241440:intron | 45.0% | |
| ! | CATCCAACATGTGTCGATGT+AGG | + | chr8_2:25008699-25008718 | None:intergenic | 45.0% |
| GTGAAGCACACACACTATAC+CGG | - | chr8_2:25008819-25008838 | Msa1241440:intron | 45.0% | |
| GCATGTGTCAGTATCGTGTT+TGG | - | chr8_2:25008862-25008881 | Msa1241440:intron | 45.0% | |
| !! | CAGTATCGTGTTTGGTGTCT+AGG | - | chr8_2:25008870-25008889 | Msa1241440:intron | 45.0% |
| TGTCCAACACTGACACATGT+TGG | - | chr8_2:25008893-25008912 | Msa1241440:intron | 45.0% | |
| AGAGCGGTGTGTCTCTATAA+TGG | - | chr8_2:25009358-25009377 | Msa1241440:CDS | 45.0% | |
| CAATATCTGCAGCCAATGAG+CGG | - | chr8_2:25009672-25009691 | Msa1241440:intron | 45.0% | |
| TCTGAAGGATGTAGTCAGCA+AGG | - | chr8_2:25010050-25010069 | Msa1241440:intron | 45.0% | |
| TGCACCTAAACCATGTTTGC+AGG | - | chr8_2:25010210-25010229 | Msa1241440:CDS | 45.0% | |
| CCAACTCAAGCTGGAATAGA+AGG | + | chr8_2:25010742-25010761 | None:intergenic | 45.0% | |
| CCTTCTATTCCAGCTTGAGT+TGG | - | chr8_2:25010739-25010758 | Msa1241440:intron | 45.0% | |
| AGGACGAGCTATTCAAAGAG+AGG | - | chr8_2:25010826-25010845 | Msa1241440:intron | 45.0% | |
| GGACGAGCTATTCAAAGAGA+GGG | - | chr8_2:25010827-25010846 | Msa1241440:intron | 45.0% | |
| TCAAAGAGAGGGACATCATC+AGG | - | chr8_2:25010838-25010857 | Msa1241440:intron | 45.0% | |
| ! | ACTTGCTGAACAGAAGGACA+AGG | + | chr8_2:25010878-25010897 | None:intergenic | 45.0% |
| !! | TGGCTAACTTGCTGAACAGA+AGG | + | chr8_2:25010884-25010903 | None:intergenic | 45.0% |
| ATTAGCGGCTTCAGGATTAG+CGG | + | chr8_2:25011098-25011117 | None:intergenic | 45.0% | |
| TCATGATGACTGCTGTCTGT+TGG | + | chr8_2:25011142-25011161 | None:intergenic | 45.0% | |
| ATCATGAAGAAATTCCGGGC+TGG | - | chr8_2:25011155-25011174 | Msa1241440:intron | 45.0% | |
| CATCTTGTCCACCTCAGAAA+GGG | + | chr8_2:25011182-25011201 | None:intergenic | 45.0% | |
| GGTAAATTGTAGTCTTCGGG+AGG | - | chr8_2:25011275-25011294 | Msa1241440:intron | 45.0% | |
| AAATTGTAGTCTTCGGGAGG+GGG | - | chr8_2:25011278-25011297 | Msa1241440:intron | 45.0% | |
| GGTCAACGCGATGAGATCAA+AGG | + | chr8_2:25007967-25007986 | None:intergenic | 50.0% | |
| ! | GATCTCATCGCGTTGACCTT+AGG | - | chr8_2:25007969-25007988 | Msa1241440:three_prime_UTR | 50.0% |
| AATACTCACGGCAGGGAAAC+GGG | + | chr8_2:25008102-25008121 | None:intergenic | 50.0% | |
| TCGATGTAGGACACCTGACA+CGG | + | chr8_2:25008686-25008705 | None:intergenic | 50.0% | |
| TGTCACATGAGACCGCTCAT+TGG | + | chr8_2:25009687-25009706 | None:intergenic | 50.0% | |
| AAGGTTCCTGACTACAGCCA+TGG | - | chr8_2:25010069-25010088 | Msa1241440:intron | 50.0% | |
| CATCAGTATGGCCATGACCA+TGG | + | chr8_2:25010089-25010108 | None:intergenic | 50.0% | |
| CTGCAGCTTTCCTGCAAACA+TGG | + | chr8_2:25010223-25010242 | None:intergenic | 50.0% | |
| CATGTTTGCAGGAAAGCTGC+AGG | - | chr8_2:25010221-25010240 | Msa1241440:intron | 50.0% | |
| AGGAAAGCTGCAGGTGATGA+TGG | - | chr8_2:25010230-25010249 | Msa1241440:intron | 50.0% | |
| AGAAGCTAAGAGGGGCAAGA+TGG | - | chr8_2:25010268-25010287 | Msa1241440:intron | 50.0% | |
| CTCTTCCTCTTCCTCTACCT+CGG | + | chr8_2:25010796-25010815 | None:intergenic | 50.0% | |
| AGAAGGACAAGGCTCAGACT+CGG | + | chr8_2:25010867-25010886 | None:intergenic | 50.0% | |
| ! | GCTTCAGGATTAGCGGCTTT+GGG | + | chr8_2:25011091-25011110 | None:intergenic | 50.0% |
| TTCAGAGACAGGGGGATTAG+CGG | + | chr8_2:25011113-25011132 | None:intergenic | 50.0% | |
| TTGGAGGAGGTTCAGAGACA+GGG | + | chr8_2:25011123-25011142 | None:intergenic | 50.0% | |
| TGATGACTGCTGTCTGTTGG+AGG | + | chr8_2:25011139-25011158 | None:intergenic | 50.0% | |
| CCATCTTGTCCACCTCAGAA+AGG | + | chr8_2:25011183-25011202 | None:intergenic | 50.0% | |
| !! | CCTTTCTGAGGTGGACAAGA+TGG | - | chr8_2:25011180-25011199 | Msa1241440:intron | 50.0% |
| GGCAAGCTGCATCGAATCAA+TGG | + | chr8_2:25011206-25011225 | None:intergenic | 50.0% | |
| ATCCATTCGCGTACCAAGCT+GGG | + | chr8_2:25011227-25011246 | None:intergenic | 50.0% | |
| ! | CTCATCGCGTTGACCTTAGG+AGG | - | chr8_2:25007972-25007991 | Msa1241440:three_prime_UTR | 55.0% |
| TCGTGTCTAGTGTCCGTGTC+AGG | - | chr8_2:25008670-25008689 | Msa1241440:intron | 55.0% | |
| CCATGACCATGGCTGTAGTC+AGG | + | chr8_2:25010078-25010097 | None:intergenic | 55.0% | |
| CCTGACTACAGCCATGGTCA+TGG | - | chr8_2:25010075-25010094 | Msa1241440:intron | 55.0% | |
| GGTCATGGCCATACTGATGC+TGG | - | chr8_2:25010090-25010109 | Msa1241440:intron | 55.0% | |
| CATGGCCATACTGATGCTGG+TGG | - | chr8_2:25010093-25010112 | Msa1241440:intron | 55.0% | |
| CAGCACCACCAGCATCAGTA+TGG | + | chr8_2:25010101-25010120 | None:intergenic | 55.0% | |
| TAGTGTGGCCCAACTCAAGC+TGG | + | chr8_2:25010751-25010770 | None:intergenic | 55.0% | |
| CCACACTAGCCCTACTGGTA+GGG | - | chr8_2:25010763-25010782 | Msa1241440:intron | 55.0% | |
| CACACTAGCCCTACTGGTAG+GGG | - | chr8_2:25010764-25010783 | Msa1241440:intron | 55.0% | |
| CGAGGTAGAGGAAGAGGAAG+AGG | - | chr8_2:25010794-25010813 | Msa1241440:intron | 55.0% | |
| AGAGGAAGAGGAAGAGGACG+AGG | - | chr8_2:25010800-25010819 | Msa1241440:intron | 55.0% | |
| ! | GGCTTCAGGATTAGCGGCTT+TGG | + | chr8_2:25011092-25011111 | None:intergenic | 55.0% |
| TGGAGGAGGTTCAGAGACAG+GGG | + | chr8_2:25011122-25011141 | None:intergenic | 55.0% | |
| GTTGGAGGAGGTTCAGAGAC+AGG | + | chr8_2:25011124-25011143 | None:intergenic | 55.0% | |
| TGACTGCTGTCTGTTGGAGG+AGG | + | chr8_2:25011136-25011155 | None:intergenic | 55.0% | |
| CATCCATTCGCGTACCAAGC+TGG | + | chr8_2:25011228-25011247 | None:intergenic | 55.0% | |
| TTGGGCCACACTAGCCCTAC+TGG | - | chr8_2:25010758-25010777 | Msa1241440:intron | 60.0% | |
| GCCACACTAGCCCTACTGGT+AGG | - | chr8_2:25010762-25010781 | Msa1241440:intron | 60.0% | |
| ! | CCCTACCAGTAGGGCTAGTG+TGG | + | chr8_2:25010766-25010785 | None:intergenic | 60.0% |
| AGCCCTACTGGTAGGGGAAG+AGG | - | chr8_2:25010770-25010789 | Msa1241440:intron | 60.0% | |
| GGCCTCTTCCCCTACCAGTA+GGG | + | chr8_2:25010775-25010794 | None:intergenic | 60.0% | |
| AGAGGCCGAGGTAGAGGAAG+AGG | - | chr8_2:25010788-25010807 | Msa1241440:intron | 60.0% | |
| AGAGGAAGAGGACGAGGTCG+AGG | - | chr8_2:25010806-25010825 | Msa1241440:intron | 60.0% | |
| ! | ACAGGGGGATTAGCGGCTTC+AGG | + | chr8_2:25011106-25011125 | None:intergenic | 60.0% |
| GGAGGAGGTTCAGAGACAGG+GGG | + | chr8_2:25011121-25011140 | None:intergenic | 60.0% | |
| ACCTCAGAAAGGGACCAGCC+CGG | + | chr8_2:25011172-25011191 | None:intergenic | 60.0% | |
| TCGATGCAGCTTGCCCAGCT+TGG | - | chr8_2:25011211-25011230 | Msa1241440:intron | 60.0% | |
| TGCCCAGCTTGGTACGCGAA+TGG | - | chr8_2:25011222-25011241 | Msa1241440:intron | 60.0% | |
| CGGCCTCTTCCCCTACCAGT+AGG | + | chr8_2:25010776-25010795 | None:intergenic | 65.0% | |
| ACTGGTAGGGGAAGAGGCCG+AGG | - | chr8_2:25010776-25010795 | Msa1241440:intron | 65.0% | |
| AGGGGAAGAGGCCGAGGTAG+AGG | - | chr8_2:25010782-25010801 | Msa1241440:intron | 65.0% | |
| !! | TCCGGGCTGGTCCCTTTCTG+AGG | - | chr8_2:25011168-25011187 | Msa1241440:intron | 65.0% |
| !! | GGGCTGGTCCCTTTCTGAGG+TGG | - | chr8_2:25011171-25011190 | Msa1241440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 25007780 | 25011646 | 25007780 | ID=Msa1241440;Name=Msa1241440 |
| chr8_2 | mRNA | 25007780 | 25011646 | 25007780 | ID=Msa1241440-mRNA-1;Parent=Msa1241440;Name=Msa1241440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=300|1|1|1|1|1|6|367|305 |
| chr8_2 | exon | 25007780 | 25008674 | 25007780 | ID=Msa1241440-mRNA-1:exon:8865;Parent=Msa1241440-mRNA-1 |
| chr8_2 | exon | 25009137 | 25009194 | 25009137 | ID=Msa1241440-mRNA-1:exon:8864;Parent=Msa1241440-mRNA-1 |
| chr8_2 | exon | 25009281 | 25009412 | 25009281 | ID=Msa1241440-mRNA-1:exon:8863;Parent=Msa1241440-mRNA-1 |
| chr8_2 | exon | 25010140 | 25010233 | 25010140 | ID=Msa1241440-mRNA-1:exon:8862;Parent=Msa1241440-mRNA-1 |
| chr8_2 | exon | 25010323 | 25010395 | 25010323 | ID=Msa1241440-mRNA-1:exon:8861;Parent=Msa1241440-mRNA-1 |
| chr8_2 | exon | 25011314 | 25011646 | 25011314 | ID=Msa1241440-mRNA-1:exon:8860;Parent=Msa1241440-mRNA-1 |
| chr8_2 | five_prime_UTR | 25011347 | 25011646 | 25011347 | ID=Msa1241440-mRNA-1:five_prime_utr;Parent=Msa1241440-mRNA-1 |
| chr8_2 | CDS | 25011314 | 25011346 | 25011314 | ID=Msa1241440-mRNA-1:cds;Parent=Msa1241440-mRNA-1 |
| chr8_2 | CDS | 25010323 | 25010395 | 25010323 | ID=Msa1241440-mRNA-1:cds;Parent=Msa1241440-mRNA-1 |
| chr8_2 | CDS | 25010140 | 25010233 | 25010140 | ID=Msa1241440-mRNA-1:cds;Parent=Msa1241440-mRNA-1 |
| chr8_2 | CDS | 25009281 | 25009412 | 25009281 | ID=Msa1241440-mRNA-1:cds;Parent=Msa1241440-mRNA-1 |
| chr8_2 | CDS | 25009137 | 25009194 | 25009137 | ID=Msa1241440-mRNA-1:cds;Parent=Msa1241440-mRNA-1 |
| chr8_2 | CDS | 25008147 | 25008674 | 25008147 | ID=Msa1241440-mRNA-1:cds;Parent=Msa1241440-mRNA-1 |
| chr8_2 | three_prime_UTR | 25007780 | 25008146 | 25007780 | ID=Msa1241440-mRNA-1:three_prime_utr;Parent=Msa1241440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
